[1] "ofn"          "-oTGBMLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/GBMLGG-TP/22506567/GBMLGG-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBMLGG-TP/22534381/transformed.cor.cli.txt"

nPatients in clinical file=1110, in cluster file=1090, common to both=1085
[1]   75 1085
[1] "AMP PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           104                            981 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           104                            981 
[1] "AMP PEAK  2(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        144                         941 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        144                         941 
[1] "AMP PEAK  3(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          204                           881 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          204                           881 
[1] "AMP PEAK  4(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        129                         956 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        129                         956 
[1] "AMP PEAK  5(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           72                          1013 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           72                          1013 
[1] "AMP PEAK  6(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           130                            955 
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           130                            955 
[1] "AMP PEAK  7(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           69                          1016 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           69                          1016 
[1] "AMP PEAK  8(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                        138                         947 
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                        138                         947 
[1] "AMP PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                            76                           1009 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                            76                           1009 
[1] "AMP PEAK 10(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          630                           455 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          630                           455 
[1] "AMP PEAK 11(7Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                           577                            508 
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                           577                            508 
[1] "AMP PEAK 12(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          631                           454 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          631                           454 
[1] "AMP PEAK 13(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          641                           444 
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          641                           444 
[1] "AMP PEAK 14(7Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                          654                           431 
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                          654                           431 
[1] "AMP PEAK 15(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           169                            916 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           169                            916 
[1] "AMP PEAK 16(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                          141                           944 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                          141                           944 
[1] "AMP PEAK 17(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            88                            997 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            88                            997 
[1] "AMP PEAK 18(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          59                         1026 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          59                         1026 
[1] "AMP PEAK 19(11Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                           112                            973 
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                           112                            973 
[1] "AMP PEAK 20(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                            152                             933 
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                            152                             933 
[1] "AMP PEAK 21(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                           171                            914 
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                           171                            914 
[1] "AMP PEAK 22(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                         111                          974 
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                         111                          974 
[1] "AMP PEAK 23(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                          54                         1031 
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                          54                         1031 
[1] "AMP PEAK 24(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                             44                            1041 
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                             44                            1041 
[1] "AMP PEAK 25(17P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                            74                           1011 
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                            74                           1011 
[1] "AMP PEAK 26(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                           127                            958 
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                           127                            958 
[1] "AMP PEAK 27(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                           373                            712 
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                           373                            712 
[1] "AMP PEAK 28(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                         246                          839 
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                         246                          839 
[1] "AMP PEAK 29(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                           230                            855 
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                           230                            855 
[1] "AMP PEAK 30(XP11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                           104                            981 
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                           104                            981 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           315                            770 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           315                            770 
[1] "DEL PEAK  2(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           344                            741 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           344                            741 
[1] "DEL PEAK  3(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          257                           828 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          257                           828 
[1] "DEL PEAK  4(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          234                           851 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          234                           851 
[1] "DEL PEAK  5(1Q42.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            78                           1007 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            78                           1007 
[1] "DEL PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         69                        1016 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         69                        1016 
[1] "DEL PEAK  7(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           68                          1017 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           68                          1017 
[1] "DEL PEAK  8(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          121                           964 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          121                           964 
[1] "DEL PEAK  9(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           109                            976 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           109                            976 
[1] "DEL PEAK 10(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            95                            990 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            95                            990 
[1] "DEL PEAK 11(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                        107                         978 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                        107                         978 
[1] "DEL PEAK 12(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          230                           855 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          230                           855 
[1] "DEL PEAK 13(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           106                            979 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           106                            979 
[1] "DEL PEAK 14(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        132                         953 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        132                         953 
[1] "DEL PEAK 15(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          138                           947 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          138                           947 
[1] "DEL PEAK 16(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           239                            846 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           239                            846 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        260                         825 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        260                         825 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           88                           997 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           88                           997 
[1] "DEL PEAK 19(8Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           78                          1007 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           78                          1007 
[1] "DEL PEAK 20(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          592                           493 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          592                           493 
[1] "DEL PEAK 21(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           549                            536 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           549                            536 
[1] "DEL PEAK 22(10P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         549                          536 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         549                          536 
[1] "DEL PEAK 23(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                            624                             461 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                            624                             461 
[1] "DEL PEAK 24(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                           661                            424 
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                           661                            424 
[1] "DEL PEAK 25(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           234                            851 
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           234                            851 
[1] "DEL PEAK 26(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                           176                            909 
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                           176                            909 
[1] "DEL PEAK 27(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           159                            926 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           159                            926 
[1] "DEL PEAK 28(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                           110                            975 
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                           110                            975 
[1] "DEL PEAK 29(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                         147                          938 
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                         147                          938 
[1] "DEL PEAK 30(12Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                         142                          943 
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                         142                          943 
[1] "DEL PEAK 31(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           382                            703 
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           382                            703 
[1] "DEL PEAK 32(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                           365                            720 
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                           365                            720 
[1] "DEL PEAK 33(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           244                            841 
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           244                            841 
[1] "DEL PEAK 34(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           291                            794 
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           291                            794 
[1] "DEL PEAK 35(14Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           275                            810 
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           275                            810 
[1] "DEL PEAK 36(15Q14) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         215                          870 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         215                          870 
[1] "DEL PEAK 37(16P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                           114                            971 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                           114                            971 
[1] "DEL PEAK 38(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           128                            957 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           128                            957 
[1] "DEL PEAK 39(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                           116                            969 
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                           116                            969 
[1] "DEL PEAK 40(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            93                            992 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            93                            992 
[1] "DEL PEAK 41(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                         155                          930 
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                         155                          930 
[1] "DEL PEAK 42(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            364                             721 
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            364                             721 
[1] "DEL PEAK 43(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                            355                             730 
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                            355                             730 
[1] "DEL PEAK 44(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            289                             796 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            289                             796 
[1] "DEL PEAK 45(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                          183                           902 
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                          183                           902 
[1] "data2feature, selection=ALL"
 [1] "YEARS_TO_BIRTH"                      
 [2] "VITAL_STATUS"                        
 [3] "DAYS_TO_DEATH"                       
 [4] "DAYS_TO_LAST_FOLLOWUP"               
 [5] "TUMOR_TISSUE_SITE"                   
 [6] "GENDER"                              
 [7] "DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS"
 [8] "DAYS_TO_LAST_KNOWN_ALIVE"            
 [9] "RADIATION_THERAPY"                   
[10] "KARNOFSKY_PERFORMANCE_SCORE"         
[11] "HISTOLOGICAL_TYPE"                   
[12] "RACE"                                
[13] "ETHNICITY"                           

Input Data has 13 rows and 1085 columns.

[1] "Last Follow UP"
Variable 1:'YEARS_TO_BIRTH':	nDistinctValues=74,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITAL_STATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYS_TO_DEATH':	nDistinctValues=477,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 4:'DAYS_TO_LAST_FOLLOWUP':	nDistinctValues=408,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('FOLLOWUP', vnms) to deal with survival parameters seperately"
Variable 5:'TUMOR_TISSUE_SITE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 8:'DAYS_TO_LAST_KNOWN_ALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "DAYS_TO_LAST_KNOWN_ALIVE is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 9:'RADIATION_THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'KARNOFSKY_PERFORMANCE_SCORE':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL_TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RACE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 1085 columns, 1 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "* non-survival variables: "
[1] "YEARS_TO_BIRTH"              "TUMOR_TISSUE_SITE"          
[3] "GENDER"                      "RADIATION_THERAPY"          
[5] "KARNOFSKY_PERFORMANCE_SCORE" "HISTOLOGICAL_TYPE"          
[7] "RACE"                        "ETHNICITY"                  
YEARS_TO_BIRTH, nv=74, binary=FALSE, numeric=TRUE
TUMOR_TISSUE_SITE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
RADIATION_THERAPY, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY_PERFORMANCE_SCORE, nv=9, binary=FALSE, numeric=TRUE
HISTOLOGICAL_TYPE, nv=6, binary=FALSE, numeric=FALSE
RACE, nv=4, binary=FALSE, numeric=FALSE
ETHNICITY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.21) MUTATION ANALYSIS
D1V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  1(1P36.21) MUTATED    18  86
  AMP PEAK  1(1P36.21) WILD-TYPE 462 512
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           104                            974 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            86                            512 
$`AMP PEAK  1(1P36.21) MUTATED`
TCGA-CS-6665 TCGA-06-5856 TCGA-06-6698 TCGA-12-1598 TCGA-12-3646 TCGA-12-3653 
       51.55         3.75         4.77        15.65        44.02        14.53 
TCGA-12-5295 TCGA-14-0783 TCGA-14-1034 TCGA-14-1452 TCGA-14-1454 TCGA-14-1794 
       14.93         6.21        15.95         7.10        30.18         0.99 
TCGA-14-1823 TCGA-14-1827 TCGA-14-2554 TCGA-14-3477 TCGA-16-1056 TCGA-19-1390 
       17.85         5.88        17.49         3.78        14.01        25.38 
TCGA-19-1787 TCGA-19-1791 TCGA-19-4065 TCGA-26-1440 TCGA-26-5132 TCGA-26-5136 
       12.66         0.13         7.04         9.73         9.40        18.97 
TCGA-28-1752 TCGA-28-2509 TCGA-32-1970 TCGA-32-1987 TCGA-32-2638 TCGA-32-4210 
        8.48         4.77        15.39        14.86        25.18         3.72 
TCGA-32-5222 TCGA-41-2575 TCGA-41-6646 TCGA-74-6584 TCGA-76-4934 TCGA-CS-4941 
       19.23         9.53        12.46         7.50         2.53         7.69 
TCGA-DU-7010 TCGA-DU-8165 TCGA-DU-A5TT TCGA-E1-5304 TCGA-E1-A7YD TCGA-E1-A7YQ 
       14.99        19.13        24.43        41.13        14.30        51.88 
TCGA-HT-7686 TCGA-HT-A4DS TCGA-S9-A6WM TCGA-TM-A84I TCGA-06-0209 TCGA-02-0001 
       42.74         0.23        19.86        28.08         7.63        11.77 
TCGA-02-0025 TCGA-02-0052 TCGA-02-0055 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 
       42.74        12.59         2.50        11.67        92.65        17.72 
TCGA-02-0269 TCGA-02-0332 TCGA-02-0451 TCGA-02-0456 TCGA-06-0130 TCGA-06-0133 
       10.75        25.71        16.21         3.35        12.95        14.30 
TCGA-06-0152 TCGA-06-0173 TCGA-06-0177 TCGA-06-0182 TCGA-06-0187 TCGA-06-0188 
       12.33         4.47         4.18         3.65        27.22        44.58 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0213 TCGA-06-0216 TCGA-06-0237 
       38.96         7.40         7.66         0.53        24.16        13.64 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 TCGA-06-2557 
        4.70        35.11        12.62         5.75         2.10         1.08 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0386 TCGA-08-0520 TCGA-08-0531 TCGA-12-0619 
        9.80        29.23        18.02        10.75         7.56        34.92 
TCGA-12-0662 TCGA-12-0769 TCGA-12-0776 TCGA-12-0820 TCGA-12-0826 TCGA-12-1090 
       38.17        15.06         9.73        18.48        27.78         7.59 
TCGA-12-1098 TCGA-12-1099 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 
        3.98         4.14         1.35         5.39         2.04        28.93 
TCGA-15-1449 TCGA-19-1386 TCGA-19-1388 TCGA-28-5207 TCGA-28-5216 TCGA-28-6450 
       13.28         9.07        12.95        11.28        13.64         5.42 
TCGA-32-2616 TCGA-76-6283 
        7.36         5.42 

$`AMP PEAK  1(1P36.21) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         2.73         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
        8.32        12.85         1.55         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
        1.87         3.12         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 
       21.73        25.68        14.73         6.77        59.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 
       15.22        10.95        12.69        34.92         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
       15.12        11.97         0.95        23.05        13.78         3.25 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
        2.89        16.50        26.33         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78        23.11         1.15         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1829 
        6.67        12.43         1.97        17.79         7.63         7.17 
TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        7.96         3.42        17.59        29.03         4.57        10.29 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
        9.14        21.24        13.97         6.41         8.61        14.27 
TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 
        3.39         3.65         7.17         3.25         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
        1.78        22.49        14.07        16.80        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1443 TCGA-26-1799 TCGA-26-5135 
       28.54        10.03        13.87         7.13         9.37         8.88 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       16.77        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 
        0.20         2.53         9.21         8.35         7.63         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-32-1973 
        1.55         2.83         0.13         0.66         6.74        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        8.84        22.78        21.14        12.59        19.86        10.85 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        0.20        15.12         4.08         1.45        25.58         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         8.22         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.17        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
        2.70        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA 
       23.90        34.45        18.64        36.20         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
       20.55       117.50        43.89        36.36        60.10        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.26        21.01        53.62         6.38        17.69        26.76 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       37.38        46.95        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        19.96        63.88        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW 
       14.17        33.27        29.85        31.69        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
       51.52        37.38         7.50        44.42        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       50.14        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       95.57       130.78        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU 
       12.43        16.18        21.30        75.02        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 
        0.16        16.24         0.76        44.68         6.05         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
       15.72        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       31.63        12.76        28.87        20.71        19.00        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        9.44         5.88         7.96         7.59         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23        13.41 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50        16.70        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       32.65        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       40.93        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J 
       24.92        16.18        59.05        40.64        30.44        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
       37.71        20.81         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       20.12        53.10        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       14.73         3.22        15.09         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       27.02        65.00        17.65        23.18        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       48.95        16.54        16.93        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        15.91         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 
       14.50        10.55        47.11        11.34         9.27        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 
        5.85        19.66         3.29        13.12         3.22         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0189 
       91.00        88.14        20.25        69.90        73.84        15.42 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 
       10.42         4.67         5.56         0.39         8.42         7.40 
TCGA-06-0211 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
       11.84        15.02         0.72        19.82        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
       48.69        10.82         9.01         0.26        72.36         9.57 
TCGA-06-0413 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        3.16         5.75         9.80        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       23.93         6.84         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        33.90        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
       31.50         7.79         5.39       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       12.16        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       15.35        13.97         0.72        12.56         4.27        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 
       11.08        19.59        58.68        19.33         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
       15.98        18.41        14.73        12.99        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
       94.78         0.10        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       20.38        28.41        53.85        43.23         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       14.86        91.76        24.79        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 
        8.94        20.58       127.59         5.82        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-14-0787 TCGA-14-0789 
       12.23        15.85         9.11        14.53         2.24        11.24 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
       19.30         0.79        13.78        50.53        19.10        53.19 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
        3.91        26.07        16.37        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
       10.75         5.95         4.64        31.33        14.86         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        1.58         7.92         2.33         7.30         5.26        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-76-6280 TCGA-76-6660 TCGA-81-5910 
        5.16        22.68        12.76        11.38         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                          0.13                           0.03 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                         92.65                         211.17 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                        12.525                         16.620 
[1] "0.1 - 92.7 (12.5)"  "0.0 - 211.2 (16.6)"
[1] "hr=" "2.3"
D1V2, continuous
D1V3, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED    92  12
  AMP PEAK  1(1P36.21) WILD-TYPE 481 500
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED     92   12
  AMP PEAK  1(1P36.21) WILD-TYPE  481  500
                        clus
vv                       AMP PEAK  1(1P36.21) MUTATED
  BRAIN                                            92
  CENTRAL NERVOUS SYSTEM                           12
                        clus
vv                       AMP PEAK  1(1P36.21) WILD-TYPE
  BRAIN                                             481
  CENTRAL NERVOUS SYSTEM                            500
[1] 2 2
[1] FALSE
D1V4, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED    47  57
  AMP PEAK  1(1P36.21) WILD-TYPE 406 575
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED     47   57
  AMP PEAK  1(1P36.21) WILD-TYPE  406  575
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  FEMALE                           47                            406
  MALE                             57                            575
[1] 2 2
[1] FALSE
D1V5, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED    17  83
  AMP PEAK  1(1P36.21) WILD-TYPE 241 687
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED     17   83
  AMP PEAK  1(1P36.21) WILD-TYPE  241  687
     clus
vv    AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  NO                            17                            241
  YES                           83                            687
[1] 2 2
[1] FALSE
D1V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  1(1P36.21) MUTATED             9                             1
  AMP PEAK  1(1P36.21) WILD-TYPE         185                            29
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  1(1P36.21) MUTATED                  0                 3
  AMP PEAK  1(1P36.21) WILD-TYPE              129               186
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK  1(1P36.21) MUTATED                     1
  AMP PEAK  1(1P36.21) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  1(1P36.21) MUTATED                                90
  AMP PEAK  1(1P36.21) WILD-TYPE                             435
D1V7, multiclass
                                 clus
vv                                AMP PEAK  1(1P36.21) MUTATED
  ASTROCYTOMA                                                9
  GLIOBLASTOMA MULTIFORME (GBM)                              1
  OLIGOASTROCYTOMA                                           0
  OLIGODENDROGLIOMA                                          3
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           90
                                 clus
vv                                AMP PEAK  1(1P36.21) WILD-TYPE
  ASTROCYTOMA                                                185
  GLIOBLASTOMA MULTIFORME (GBM)                               29
  OLIGOASTROCYTOMA                                           129
  OLIGODENDROGLIOMA                                          186
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            435
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  1(1P36.21) MUTATED                                  0     0
  AMP PEAK  1(1P36.21) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  1(1P36.21) MUTATED                           5    94
  AMP PEAK  1(1P36.21) WILD-TYPE                        66   865
D1V8, multiclass
                                  clus
vv                                 AMP PEAK  1(1P36.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   5
  WHITE                                                      94
                                  clus
vv                                 AMP PEAK  1(1P36.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    66
  WHITE                                                       865
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V9, binary
                                cls
clus                               0   1
  AMP PEAK  1(1P36.21) MUTATED     3  82
  AMP PEAK  1(1P36.21) WILD-TYPE  41 839
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.21) MUTATED      3   82
  AMP PEAK  1(1P36.21) WILD-TYPE   41  839
                        clus
vv                       AMP PEAK  1(1P36.21) MUTATED
  HISPANIC OR LATINO                                3
  NOT HISPANIC OR LATINO                           82
                        clus
vv                       AMP PEAK  1(1P36.21) WILD-TYPE
  HISPANIC OR LATINO                                 41
  NOT HISPANIC OR LATINO                            839
[1] 2 2
[1] FALSE

Clustering(2) Variable = AMP PEAK  2(1Q22) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  2(1Q22) MUTATED    49  95
  AMP PEAK  2(1Q22) WILD-TYPE 431 503
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        144                         934 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         95                         503 
$`AMP PEAK  2(1Q22) MUTATED`
TCGA-CS-6665 TCGA-06-5856 TCGA-06-6698 TCGA-06-A5U0 TCGA-12-0615 TCGA-12-1598 
       51.55         3.75         4.77        26.79        15.35        15.65 
TCGA-12-3646 TCGA-12-3653 TCGA-14-0783 TCGA-14-1452 TCGA-14-1454 TCGA-14-1794 
       44.02        14.53         6.21         7.10        30.18         0.99 
TCGA-14-1823 TCGA-14-3477 TCGA-19-1786 TCGA-19-1791 TCGA-19-2619 TCGA-19-2625 
       17.85         3.78         7.17         0.13         9.67         4.08 
TCGA-19-4065 TCGA-26-1440 TCGA-26-5132 TCGA-28-1752 TCGA-28-2509 TCGA-32-1970 
        7.04         9.73         9.40         8.48         4.77        15.39 
TCGA-32-1987 TCGA-32-2632 TCGA-32-2634 TCGA-32-4210 TCGA-32-5222 TCGA-41-5651 
       14.86         8.84        22.78         3.72        19.23        15.12 
TCGA-74-6584 TCGA-76-4934 TCGA-CS-4941 TCGA-DB-A64L TCGA-DH-A669 TCGA-DU-6392 
        7.50         2.53         7.69        24.20        30.21       211.17 
TCGA-DU-6396 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-7010 TCGA-DU-7015 TCGA-DU-7290 
       75.16         1.22        11.64        14.99        90.77        10.36 
TCGA-DU-7304 TCGA-DU-8162 TCGA-DU-8165 TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A6S7 
       23.31        14.60        19.13        31.69        24.43        20.98 
TCGA-DU-A7TB TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YQ 
       51.52        50.14        41.13        95.57        14.30        51.88 
TCGA-FG-5962 TCGA-FG-8185 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7677 TCGA-HT-7688 
       47.77        14.24        17.42        24.26        16.24        31.69 
TCGA-HT-8108 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-HW-A5KM TCGA-QH-A6CV TCGA-S9-A6WM 
        2.50         0.23        20.22        20.71        14.53        19.86 
TCGA-S9-A7R1 TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J TCGA-VM-A8CA TCGA-VM-A8CF 
      169.84        24.92        28.08        24.16        13.51        20.02 
TCGA-WH-A86K TCGA-06-0209 TCGA-02-0001 TCGA-02-0010 TCGA-02-0014 TCGA-02-0024 
       13.32         7.63        11.77        35.41        82.59        53.10 
TCGA-02-0025 TCGA-02-0052 TCGA-02-0055 TCGA-02-0069 TCGA-02-0099 TCGA-02-0104 
       42.74        12.59         2.50        28.70         3.48        65.00 
TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 TCGA-02-0269 TCGA-02-0330 TCGA-02-0332 
       11.67        92.65        17.72        10.75        15.91        25.71 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2483 TCGA-06-0128 TCGA-06-0130 TCGA-06-0133 
       16.21         3.35        15.32        22.72        12.95        14.30 
TCGA-06-0152 TCGA-06-0166 TCGA-06-0168 TCGA-06-0177 TCGA-06-0182 TCGA-06-0188 
       12.33         5.85        19.66         4.18         3.65        44.58 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0216 TCGA-06-0237 TCGA-06-0409 
       38.96         7.40         7.66        24.16        13.64        72.36 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-1084 TCGA-06-1087 TCGA-06-2557 
        4.70        35.11         5.75        23.93         4.04         1.08 
TCGA-06-2569 TCGA-08-0349 TCGA-08-0350 TCGA-08-0386 TCGA-08-0524 TCGA-08-0531 
        0.43         9.80        29.23        18.02         7.27         7.56 
TCGA-12-0619 TCGA-12-0662 TCGA-12-0773 TCGA-12-0826 TCGA-12-0827 TCGA-12-1090 
       34.92        38.17        43.23        27.78        38.76         7.59 
TCGA-12-1098 TCGA-12-1099 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 
        3.98         4.14         1.35         5.39         2.04        28.93 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-19-0962 TCGA-19-1388 TCGA-26-5133 
       53.19        13.28        26.07         0.66        12.95        14.86 
TCGA-26-5139 TCGA-26-6173 TCGA-28-5207 TCGA-28-5216 TCGA-28-5218 TCGA-76-6283 
        1.58         7.92        11.28        13.64         5.16         5.42 

$`AMP PEAK  2(1Q22) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         2.73         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U1 
        8.32        12.85         1.55         4.77         4.96         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1092 TCGA-12-1599 
        3.12         2.56        14.60        17.72        21.73        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       14.73         6.77        59.77        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       12.69        34.92        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
       11.97         0.95        23.05        13.78         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78        23.11         1.15         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
        6.67        12.43         1.97        17.79         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 
        7.17        17.49         7.96         3.42        17.59        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 
        6.41         8.61        14.27         3.39        25.38         3.65 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
       12.66         3.25         4.87         1.08         7.53         0.16 
TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       24.23         7.00         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1443 
       14.96        17.79        28.54        10.03        13.87         7.13 
TCGA-26-1799 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        9.37         8.88        18.97        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        16.77        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        8.35         7.63         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        0.66         6.74        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       20.78        15.02        15.95        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       19.86        10.85         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9R 
        0.99         4.44        11.84         0.20        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        1.45        25.58         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        8.22         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 
       36.20         5.92         6.28        20.55       117.50        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       46.42        18.84        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 
       11.24        17.88        30.74        16.18        19.96        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       46.06        24.59        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 
       46.06        65.75        87.45         7.04       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       62.96       156.23       154.36       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
      117.40        30.67        26.30         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       44.02        25.91        60.30        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       23.74        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       33.27        29.85        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       21.57        95.11        22.29        11.41        26.76        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
       17.98       139.04        84.33        37.38         7.50        44.42 
TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       38.89         0.56        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       78.21       130.78        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU 
       12.43        16.18        21.30        75.02        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       32.35        39.48         0.23         0.20        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       13.68        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       48.69         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 
       40.11         0.13         0.03        16.54         3.75         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
        0.23        14.27         0.16         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       15.72        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 
        0.10        56.58        45.44        41.49        68.32        69.27 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       12.76        28.87        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.96         7.59         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50        16.70        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       28.37        27.16        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       34.78        65.39        16.18        59.05        40.64        30.44 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       43.20         0.10         7.89        39.16        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21         8.05        51.06        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0003 
       43.40        45.80        46.88        37.71        20.81         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 
       18.35        23.18        10.59        20.71        20.61        87.06 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       77.65        20.12        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       14.73         3.22        15.09         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0107 
       51.32         8.81        57.76        16.96        27.02        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 
        9.90         7.73        10.62         7.33         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        9.27        16.80        12.92        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
        6.15        20.38        47.61         6.94         3.98        33.67 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       88.14        20.25        69.90        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 
       10.42         4.67         5.56         0.39         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
       11.84         0.53        15.02         0.72        19.82        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 
       20.42        48.69        10.82         9.01         0.26         9.57 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
        3.16        12.62         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.78        26.76         6.84        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        33.90        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95        16.64         5.98         4.37        31.50 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
        7.79         5.39       120.56         7.36        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        4.18       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       37.58        22.29         3.39        12.23        14.93        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       13.97         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 
       19.59        58.68        19.33        10.75         4.80        15.98 
TCGA-08-0529 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       18.41        14.73        12.99        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        0.10        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        15.06        53.85         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 
        8.94        20.58       127.59         5.82        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-14-0787 TCGA-14-0789 
       12.23        15.85         9.11        14.53         2.24        11.24 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 
       19.30         0.79        13.78        50.53        19.10         3.91 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       16.37        11.77        21.90        10.75         9.07         5.95 
TCGA-19-1389 TCGA-26-1442 TCGA-26-5134 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 
        4.64        31.33         5.49         2.33         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       14.93        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
       11.01        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        3.75         1.61        17.72        26.30 

  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                       0.13                        0.03 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                     211.17                      182.33 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                      14.73                       16.29 
[1] "0.1 - 211.2 (14.7)" "0.0 - 182.3 (16.3)"
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED   102  42
  AMP PEAK  2(1Q22) WILD-TYPE 471 470
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED    102   42
  AMP PEAK  2(1Q22) WILD-TYPE  471  470
                        clus
vv                       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  BRAIN                                        102                         471
  CENTRAL NERVOUS SYSTEM                        42                         470
[1] 2 2
[1] FALSE
D2V4, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED    66  78
  AMP PEAK  2(1Q22) WILD-TYPE 387 554
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     66   78
  AMP PEAK  2(1Q22) WILD-TYPE  387  554
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  FEMALE                        66                         387
  MALE                          78                         554
[1] 2 2
[1] FALSE
D2V5, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED    28 111
  AMP PEAK  2(1Q22) WILD-TYPE 230 659
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     28  111
  AMP PEAK  2(1Q22) WILD-TYPE  230  659
     clus
vv    AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  NO                         28                         230
  YES                       111                         659
[1] 2 2
[1] FALSE
D2V6, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  2(1Q22) MUTATED            19                             2
  AMP PEAK  2(1Q22) WILD-TYPE         175                            28
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  2(1Q22) MUTATED                  6                17
  AMP PEAK  2(1Q22) WILD-TYPE              123               172
                             vv
clus                          TREATED PRIMARY GBM
  AMP PEAK  2(1Q22) MUTATED                     3
  AMP PEAK  2(1Q22) WILD-TYPE                  15
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  2(1Q22) MUTATED                                97
  AMP PEAK  2(1Q22) WILD-TYPE                             428
D2V7, multiclass
                                 clus
vv                                AMP PEAK  2(1Q22) MUTATED
  ASTROCYTOMA                                            19
  GLIOBLASTOMA MULTIFORME (GBM)                           2
  OLIGOASTROCYTOMA                                        6
  OLIGODENDROGLIOMA                                      17
  TREATED PRIMARY GBM                                     3
  UNTREATED PRIMARY (DE NOVO) GBM                        97
                                 clus
vv                                AMP PEAK  2(1Q22) WILD-TYPE
  ASTROCYTOMA                                             175
  GLIOBLASTOMA MULTIFORME (GBM)                            28
  OLIGOASTROCYTOMA                                        123
  OLIGODENDROGLIOMA                                       172
  TREATED PRIMARY GBM                                      15
  UNTREATED PRIMARY (DE NOVO) GBM                         428
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  2(1Q22) MUTATED                                  0     5
  AMP PEAK  2(1Q22) WILD-TYPE                                1    16
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  2(1Q22) MUTATED                          11   123
  AMP PEAK  2(1Q22) WILD-TYPE                        60   836
D2V8, multiclass
                                  clus
vv                                 AMP PEAK  2(1Q22) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    5
  BLACK OR AFRICAN AMERICAN                               11
  WHITE                                                  123
                                  clus
vv                                 AMP PEAK  2(1Q22) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     16
  BLACK OR AFRICAN AMERICAN                                 60
  WHITE                                                    836
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V9, binary
                             cls
clus                            0   1
  AMP PEAK  2(1Q22) MUTATED     2 122
  AMP PEAK  2(1Q22) WILD-TYPE  42 799
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED      2  122
  AMP PEAK  2(1Q22) WILD-TYPE   42  799
                        clus
vv                       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  HISPANIC OR LATINO                             2                          42
  NOT HISPANIC OR LATINO                       122                         799
[1] 2 2
[1] FALSE

Clustering(3) Variable = AMP PEAK  3(1Q32.1) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  3(1Q32.1) MUTATED    49 153
  AMP PEAK  3(1Q32.1) WILD-TYPE 431 445
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          202                           876 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          153                           445 
$`AMP PEAK  3(1Q32.1) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-E1-A7YN TCGA-06-1806 TCGA-06-5411 TCGA-06-5856 
        3.98        51.55        23.90        15.32         8.35         3.75 
TCGA-06-6698 TCGA-06-6699 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-12-0615 TCGA-12-1092 
        4.77         1.55        26.79         3.12        15.35        21.73 
TCGA-12-1598 TCGA-12-3649 TCGA-12-3653 TCGA-14-0783 TCGA-14-0865 TCGA-14-1401 
       15.65        15.22        14.53         6.21        16.50         3.75 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1459 TCGA-14-1794 TCGA-14-1823 TCGA-14-3477 
        7.10        30.18        12.43         0.99        17.85         3.78 
TCGA-16-0848 TCGA-19-0963 TCGA-19-1786 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 
       17.59        14.27         7.17         0.13         9.67         1.08 
TCGA-19-2625 TCGA-19-4065 TCGA-19-5952 TCGA-19-5954 TCGA-26-1440 TCGA-27-1834 
        4.08         7.04        18.90        12.10         9.73        40.54 
TCGA-27-2518 TCGA-27-2524 TCGA-27-2528 TCGA-28-1750 TCGA-28-1752 TCGA-28-2509 
       24.76         7.59        15.78         8.35         8.48         4.77 
TCGA-32-1970 TCGA-32-1979 TCGA-32-1987 TCGA-32-1991 TCGA-32-2632 TCGA-32-2634 
       15.39        19.50        14.86        16.93         8.84        22.78 
TCGA-32-4210 TCGA-32-4213 TCGA-32-5222 TCGA-41-2573 TCGA-41-3392 TCGA-41-5651 
        3.72        19.86        19.23         8.94         0.99        15.12 
TCGA-41-6646 TCGA-4W-AA9S TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4934 
       12.46         1.45         4.34        14.33         7.50         2.53 
TCGA-76-4935 TCGA-76-6662 TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-DB-5277 
       36.85        34.45         7.69        21.01         6.38        50.86 
TCGA-DB-A64L TCGA-DH-A669 TCGA-DU-6392 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-7010 
       24.20        30.21       211.17         1.22        11.64        14.99 
TCGA-DU-7015 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7304 TCGA-DU-8162 TCGA-DU-8165 
       90.77        10.36         7.96        23.31        14.60        19.13 
TCGA-DU-A5TT TCGA-DU-A7TB TCGA-DU-A7TD TCGA-E1-A7YD TCGA-E1-A7YQ TCGA-FG-5962 
       24.43        51.52         7.50        14.30        51.88        47.77 
TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-A4MW TCGA-HT-7475 TCGA-HT-7603 TCGA-HT-7688 
       18.77        18.44        18.38        17.42        23.18        31.69 
TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-QH-A6CV TCGA-QH-A6CX 
       16.24        12.23         0.23        20.22        14.53        12.23 
TCGA-S9-A6WM TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I 
       19.86       169.84        10.39        54.77        24.92        28.08 
TCGA-VM-A8CA TCGA-VM-A8CF TCGA-WH-A86K TCGA-06-0209 TCGA-02-0001 TCGA-02-0007 
       13.51        20.02        13.32         7.63        11.77        23.18 
TCGA-02-0014 TCGA-02-0024 TCGA-02-0028 TCGA-02-0052 TCGA-02-0055 TCGA-02-0071 
       82.59        53.10        90.58        12.59         2.50         5.49 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 TCGA-02-0269 TCGA-02-0330 
       65.00        11.67        92.65        17.72        10.75        15.91 
TCGA-02-0333 TCGA-02-0422 TCGA-02-0430 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
        4.37        14.50        10.55        16.21         3.35        12.92 
TCGA-02-2483 TCGA-06-0128 TCGA-06-0130 TCGA-06-0133 TCGA-06-0143 TCGA-06-0145 
       15.32        22.72        12.95        14.30        11.74         2.33 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 TCGA-06-0162 TCGA-06-0166 
        8.61        12.33        13.94         3.19         3.42         5.85 
TCGA-06-0168 TCGA-06-0177 TCGA-06-0182 TCGA-06-0185 TCGA-06-0188 TCGA-06-0192 
       19.66         4.18         3.65        73.84        44.58        38.96 
TCGA-06-0195 TCGA-06-0206 TCGA-06-0210 TCGA-06-0216 TCGA-06-0237 TCGA-06-0240 
        7.40         7.66         7.40        24.16        13.64        20.42 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 TCGA-06-0645 TCGA-06-0750 
       72.36         4.70         9.57        35.11         5.75         0.92 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1804 TCGA-06-2557 TCGA-06-2569 TCGA-08-0244 
       23.93         4.04        13.61         1.08         0.43        22.68 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0353 TCGA-08-0357 TCGA-08-0386 TCGA-08-0514 
        9.80        29.23         8.42        37.58        18.02        11.08 
TCGA-08-0524 TCGA-08-0531 TCGA-12-0619 TCGA-12-0670 TCGA-12-0692 TCGA-12-0769 
        7.27         7.56        34.92        25.97         3.65        15.06 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0829 
       43.23         7.63        10.62        27.78        38.76        20.58 
TCGA-12-1090 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0813 
        7.59         9.11         3.98         4.14         2.24         1.35 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-15-0742 TCGA-15-1446 
        5.39         2.04        28.93        19.30        13.78        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-19-0962 TCGA-19-1387 TCGA-26-6173 TCGA-28-5207 
       13.28         3.91         0.66         5.95         7.92        11.28 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5220 TCGA-76-6283 
       13.64         5.16        12.76         5.42 

$`AMP PEAK  3(1Q32.1) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 
       17.16        20.09        17.82        20.45        18.64        21.40 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 
       45.60        42.77        59.38        11.74         3.55         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6700 TCGA-06-6701 
        4.57         5.23         8.32        12.85         4.77         4.96 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1599 TCGA-12-1600 
        1.87         2.56        14.60        17.72        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3651 
        6.77        59.77        44.02        26.93        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.92        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 
        0.95        23.05        13.78         3.25         2.89        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       15.95         1.38         1.12        32.05        58.78        23.11 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 
        1.15         0.92        40.96         6.67         1.97        17.79 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 
       13.97         6.41         8.61         3.39        25.38         3.65 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 
       12.66         3.25         4.87         7.53         0.16        24.23 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 
        7.00         6.64        17.19         8.02         4.73         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 
       22.49        14.07        16.80        14.96        17.79        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       10.03        13.87         7.13         9.37         9.40         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
       18.97        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 
       21.30        30.05        14.04        11.51        18.08        16.77 
TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
       16.08         2.86        14.40         0.20         2.53         9.21 
TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        7.63         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2506 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 
        6.74        21.07         0.49         0.10        15.85         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        4.67        12.69        12.23        20.78        15.02        15.95 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 
       25.18        21.14        12.59        10.85         0.85        13.35 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-4W-AA9R TCGA-4W-AA9T 
        9.53         4.44        11.84         0.20         4.08        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
        3.45        20.91         8.22         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        3.65         9.17        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 
        8.35        20.98         4.83         5.03        23.90        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 
       36.20         5.92         6.28        20.55       117.50        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6186 
       36.36        60.10        40.18         0.26        53.62        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       26.76        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
      122.73        81.96        75.25        47.93        72.92        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O 
       39.78        37.45        33.57        72.95        31.63        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D 
       16.18        19.96        63.88        46.06        24.59        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7018 
      154.36       105.21         6.54         8.84       117.40        30.67 
TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
       26.30        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76         5.10        23.74        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
       20.98        22.29        11.41        26.76        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
      139.04        84.33        37.38        44.42        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       78.21        95.57       130.78        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS 
       19.46        12.43        16.18        21.30        75.02        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 
      145.05        32.35        39.48         0.23         0.20        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 
       52.21        36.82        14.93        42.54        41.33        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       10.72        18.71        23.70        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 
        0.13         0.03        16.54         3.75         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        4.01         5.03        29.85       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       31.43         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       28.87        20.71        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.96         7.59         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       13.61        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       27.16        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       20.48        48.33        49.32        34.78        65.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB 
       61.41        26.99        31.36        45.93        43.20         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        39.16        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        51.06        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 
       46.88        37.71        20.81         4.73        18.35        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       35.41        20.71        20.61        87.06        77.65        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        12.16         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       15.09         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        28.70        25.05        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.25        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 
       57.76        16.96         3.48        27.02        17.65        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0271 
       99.98        15.65        48.95        16.54        16.93        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 
        7.73        10.62         7.33        25.71        25.12        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-02-2485 
       12.39        47.11        11.34         9.27        16.80        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
        3.98        33.67        25.35        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        0.20        10.29         2.20        20.09        17.79        10.09 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0155 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       19.46        46.59        10.45        10.82         9.44        11.80 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       56.91        10.65         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0187 
        4.04        91.00        88.14        20.25        69.90        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 
       15.42        10.42         4.67         5.56         0.39         8.42 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
       11.84         0.53        15.02         0.72        19.82        13.32 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0413 TCGA-06-0644 
       48.69        10.82         9.01         0.26         3.16        12.62 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0875 TCGA-06-0876 
       46.88         7.86         2.70         2.70        43.46        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 
        7.17        40.41        16.57        20.78        26.76         6.84 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 
       26.79        11.84        15.32        33.90        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 
        4.37        31.50         7.79         5.39       120.56         7.36 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       12.16        65.33         1.28        17.95        24.56        31.10 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       22.29         3.39        12.23        14.93        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
        0.72        12.56         4.27        42.15        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-12-0616 
       19.33        10.75         4.80        15.98        18.41        14.73 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       12.99        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 TCGA-12-0772 TCGA-12-0776 
       26.66        12.13        20.38        28.41        53.85         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 
       14.93        14.86        91.76        24.79        18.48        23.51 
TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
        8.94       127.59         5.82        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-14-0789 TCGA-14-1043 TCGA-15-1444 TCGA-15-1447 
       15.85        14.53        11.24         0.79        50.53        53.19 
TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 TCGA-19-1386 
       26.07        16.37        11.77        21.90        10.75         9.07 
TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
       12.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        2.33         7.30         5.26        14.93        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5219 TCGA-28-6450 
       11.77        31.27        23.44        11.01        22.68         5.42 
TCGA-32-2616 TCGA-76-6280 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.36        11.38         3.75         1.61        17.72        26.30 

  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                         0.13                          0.03 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                       13.415                        16.880 
[1] "0.1 - 211.2 (13.4)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.9"
D3V2, continuous
D3V3, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED   159  45
  AMP PEAK  3(1Q32.1) WILD-TYPE 414 467
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED    159   45
  AMP PEAK  3(1Q32.1) WILD-TYPE  414  467
                        clus
vv                       AMP PEAK  3(1Q32.1) MUTATED
  BRAIN                                          159
  CENTRAL NERVOUS SYSTEM                          45
                        clus
vv                       AMP PEAK  3(1Q32.1) WILD-TYPE
  BRAIN                                            414
  CENTRAL NERVOUS SYSTEM                           467
[1] 2 2
[1] FALSE
D3V4, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED    83 121
  AMP PEAK  3(1Q32.1) WILD-TYPE 370 511
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED     83  121
  AMP PEAK  3(1Q32.1) WILD-TYPE  370  511
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  FEMALE                          83                           370
  MALE                           121                           511
[1] 2 2
[1] FALSE
D3V5, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED    36 159
  AMP PEAK  3(1Q32.1) WILD-TYPE 222 611
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED     36  159
  AMP PEAK  3(1Q32.1) WILD-TYPE  222  611
     clus
vv    AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  NO                           36                           222
  YES                         159                           611
[1] 2 2
[1] FALSE
D3V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  3(1Q32.1) MUTATED            23                             8
  AMP PEAK  3(1Q32.1) WILD-TYPE         171                            22
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  3(1Q32.1) MUTATED                  7                15
  AMP PEAK  3(1Q32.1) WILD-TYPE              122               174
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK  3(1Q32.1) MUTATED                     5
  AMP PEAK  3(1Q32.1) WILD-TYPE                  13
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  3(1Q32.1) MUTATED                               146
  AMP PEAK  3(1Q32.1) WILD-TYPE                             379
D3V7, multiclass
                                 clus
vv                                AMP PEAK  3(1Q32.1) MUTATED
  ASTROCYTOMA                                              23
  GLIOBLASTOMA MULTIFORME (GBM)                             8
  OLIGOASTROCYTOMA                                          7
  OLIGODENDROGLIOMA                                        15
  TREATED PRIMARY GBM                                       5
  UNTREATED PRIMARY (DE NOVO) GBM                         146
                                 clus
vv                                AMP PEAK  3(1Q32.1) WILD-TYPE
  ASTROCYTOMA                                               171
  GLIOBLASTOMA MULTIFORME (GBM)                              22
  OLIGOASTROCYTOMA                                          122
  OLIGODENDROGLIOMA                                         174
  TREATED PRIMARY GBM                                        13
  UNTREATED PRIMARY (DE NOVO) GBM                           379
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  3(1Q32.1) MUTATED                                  0     5
  AMP PEAK  3(1Q32.1) WILD-TYPE                                1    16
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  3(1Q32.1) MUTATED                          18   174
  AMP PEAK  3(1Q32.1) WILD-TYPE                        53   785
D3V8, multiclass
                                  clus
vv                                 AMP PEAK  3(1Q32.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      5
  BLACK OR AFRICAN AMERICAN                                 18
  WHITE                                                    174
                                  clus
vv                                 AMP PEAK  3(1Q32.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   53
  WHITE                                                      785
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V9, binary
                               cls
clus                              0   1
  AMP PEAK  3(1Q32.1) MUTATED     2 173
  AMP PEAK  3(1Q32.1) WILD-TYPE  42 748
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q32.1) MUTATED      2  173
  AMP PEAK  3(1Q32.1) WILD-TYPE   42  748
                        clus
vv                       AMP PEAK  3(1Q32.1) MUTATED
  HISPANIC OR LATINO                               2
  NOT HISPANIC OR LATINO                         173
                        clus
vv                       AMP PEAK  3(1Q32.1) WILD-TYPE
  HISPANIC OR LATINO                                42
  NOT HISPANIC OR LATINO                           748
[1] 2 2
[1] FALSE

Clustering(4) Variable = AMP PEAK  4(1Q44) MUTATION ANALYSIS
D4V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  4(1Q44) MUTATED    36  93
  AMP PEAK  4(1Q44) WILD-TYPE 444 505
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        129                         949 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                         93                         505 
$`AMP PEAK  4(1Q44) MUTATED`
TCGA-CS-6665 TCGA-06-5856 TCGA-06-6698 TCGA-06-A5U0 TCGA-12-1598 TCGA-12-3653 
       51.55         3.75         4.77        26.79        15.65        14.53 
TCGA-14-0783 TCGA-14-0865 TCGA-14-1452 TCGA-14-1454 TCGA-14-1794 TCGA-14-1823 
        6.21        16.50         7.10        30.18         0.99        17.85 
TCGA-14-3477 TCGA-19-1786 TCGA-19-1791 TCGA-19-2625 TCGA-19-4065 TCGA-26-1440 
        3.78         7.17         0.13         4.08         7.04         9.73 
TCGA-27-2524 TCGA-28-2509 TCGA-32-1970 TCGA-32-1987 TCGA-32-2632 TCGA-32-2634 
        7.59         4.77        15.39        14.86         8.84        22.78 
TCGA-32-4210 TCGA-32-4719 TCGA-32-5222 TCGA-41-5651 TCGA-74-6578 TCGA-74-6584 
        3.72        10.85        19.23        15.12        14.33         7.50 
TCGA-76-4934 TCGA-CS-4941 TCGA-DB-5277 TCGA-DB-A64L TCGA-DH-A669 TCGA-DU-6392 
        2.53         7.69        50.86        24.20        30.21       211.17 
TCGA-DU-6400 TCGA-DU-7010 TCGA-DU-7290 TCGA-DU-7304 TCGA-DU-8162 TCGA-DU-8165 
        1.22        14.99        10.36        23.31        14.60        19.13 
TCGA-DU-A5TT TCGA-DU-A7TB TCGA-E1-5304 TCGA-E1-A7YD TCGA-E1-A7YQ TCGA-FG-5962 
       24.43        51.52        41.13        14.30        51.88        47.77 
TCGA-HT-7475 TCGA-HT-7688 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-KT-A7W1 TCGA-QH-A6CV 
       17.42        31.69         0.23        20.22        14.40        14.53 
TCGA-S9-A6WM TCGA-S9-A89Z TCGA-TQ-A7RM TCGA-VM-A8CA TCGA-VM-A8CF TCGA-WH-A86K 
       19.86        20.48        36.69        13.51        20.02        13.32 
TCGA-06-0209 TCGA-02-0001 TCGA-02-0024 TCGA-02-0028 TCGA-02-0052 TCGA-02-0055 
        7.63        11.77        53.10        90.58        12.59         2.50 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 TCGA-02-0269 TCGA-02-0290 
       65.00        11.67        92.65        17.72        10.75        15.95 
TCGA-02-0330 TCGA-02-0451 TCGA-02-0456 TCGA-02-2483 TCGA-02-2485 TCGA-06-0133 
       15.91        16.21         3.35        15.32        15.45        14.30 
TCGA-06-0152 TCGA-06-0162 TCGA-06-0166 TCGA-06-0168 TCGA-06-0173 TCGA-06-0177 
       12.33         3.42         5.85        19.66         4.47         4.18 
TCGA-06-0182 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0216 
        3.65        44.58        38.96         7.40         7.66        24.16 
TCGA-06-0237 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-1084 
       13.64        72.36         4.70        35.11         5.75        23.93 
TCGA-06-1087 TCGA-06-1801 TCGA-06-2557 TCGA-06-2561 TCGA-06-2569 TCGA-08-0349 
        4.04        11.84         1.08        17.65         0.43         9.80 
TCGA-08-0350 TCGA-08-0354 TCGA-08-0380 TCGA-08-0386 TCGA-08-0524 TCGA-08-0529 
       29.23        17.95        14.93        18.02         7.27        18.41 
TCGA-08-0531 TCGA-12-0619 TCGA-12-0657 TCGA-12-0773 TCGA-12-0826 TCGA-12-0827 
        7.56        34.92         0.10        43.23        27.78        38.76 
TCGA-12-1090 TCGA-12-1098 TCGA-12-1099 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        7.59         3.98         4.14         1.35         5.39         2.04 
TCGA-14-0871 TCGA-15-0742 TCGA-15-1449 TCGA-19-0962 TCGA-26-6173 TCGA-28-5214 
       28.93        13.78        13.28         0.66         7.92        23.44 
TCGA-28-5216 TCGA-28-5218 TCGA-76-6283 
       13.64         5.16         5.42 

$`AMP PEAK  4(1Q44) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         2.73         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U1 
        8.32        12.85         1.55         4.77         4.96         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 
        3.12         2.56        14.60        17.72        15.35        21.73 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 
        2.04        15.12        11.97         0.95        23.05        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 
        3.25         2.89        26.33        15.95         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 
        3.75        32.05        58.78        23.11         1.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
       40.96         6.67        12.43         1.97        17.79         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 
        5.88         7.17        17.49         7.96         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 
       13.97         6.41         8.61        14.27         3.39        25.38 
TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        3.65        12.66         3.25         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        7.53         0.16        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       13.87         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.77        16.08         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-32-1973 
        1.55         2.83         0.13         0.66         6.74        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-41-2571 TCGA-41-2572 
       25.18        21.14        12.59        19.86         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       12.46         4.08         1.45        25.58         3.45        20.91 
TCGA-74-6577 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        4.34         8.22         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        9.17        36.85        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       18.64        36.20         5.92         6.28        20.55       117.50 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        36.36        60.10        40.18         0.26        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       53.62         6.38        17.69        26.76        37.38        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        72.92        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       46.42        18.84        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 
       11.24        17.88        30.74        16.18        19.96        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       46.06        24.59        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       75.16        46.06        65.75        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 
        2.40        11.47        62.96       156.23       154.36       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76         5.10        23.74        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
       20.98        22.29        11.41        26.76        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
      139.04        84.33        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
        0.56        50.14        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       78.21        95.57       130.78        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS 
       19.46        12.43        16.18        21.30        75.02        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 
      145.05        32.35        39.48         0.23         0.20        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW 
       28.87        20.71        19.00        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         9.44         5.88         7.96 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.59         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        18.71        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
        2.04        40.41        44.09        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       45.93        43.20         0.10         7.89        39.16        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 
       37.05        16.01        23.21         8.05        51.06        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       24.59        12.16         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        6.54        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       26.43        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.25        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 
       57.76        16.96         3.48        27.02        17.65        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0271 
       99.98        15.65        48.95        16.54        16.93        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
        3.98        13.87        14.20        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
       10.62         7.33        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       16.80        12.92        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0169 
       10.82         9.44        11.80        56.91        10.65         3.29 
TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
       13.12         3.22         4.04        91.00        88.14        20.25 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       69.90        73.84        27.22        15.42        10.42         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        5.56         0.39         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       15.02         0.72        19.82        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.82         9.01         0.26         9.57         3.16        12.62 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 
        6.84        26.79        15.32        13.61        33.90        12.49 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.93        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 
        4.37        31.50         7.79         5.39       120.56         7.36 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        37.84         4.18       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 
       25.71        12.16        65.33         1.28         8.42        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0389 
       31.10        37.58        22.29         3.39        12.23        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       13.97         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 
       19.59        58.68        19.33        10.75         4.80        15.98 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 
       14.73        12.99        10.45         7.59        94.78        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 
       91.76        24.79        18.48        10.62        23.51         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
       20.58       127.59         5.82        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-14-0787 TCGA-14-0789 TCGA-14-1037 
       15.85         9.11        14.53         2.24        11.24        19.30 
TCGA-14-1043 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 
        0.79        50.53        19.10        53.19         3.91        26.07 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       16.37        11.77        21.90        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
       12.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        2.33         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 
       14.53        11.77        31.27        11.01        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        5.42         7.36        11.38         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                       0.10                        0.03 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                     211.17                      182.33 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                      14.30                       16.54 
[1] "0.1 - 211.2 (14.3)" "0.0 - 182.3 (16.5)"
[1] "hr=" "1.7"
D4V2, continuous
D4V3, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED    99  30
  AMP PEAK  4(1Q44) WILD-TYPE 474 482
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED     99   30
  AMP PEAK  4(1Q44) WILD-TYPE  474  482
                        clus
vv                       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  BRAIN                                         99                         474
  CENTRAL NERVOUS SYSTEM                        30                         482
[1] 2 2
[1] FALSE
D4V4, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED    60  69
  AMP PEAK  4(1Q44) WILD-TYPE 393 563
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED     60   69
  AMP PEAK  4(1Q44) WILD-TYPE  393  563
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  FEMALE                        60                         393
  MALE                          69                         563
[1] 2 2
[1] FALSE
D4V5, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED    24 100
  AMP PEAK  4(1Q44) WILD-TYPE 234 670
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED     24  100
  AMP PEAK  4(1Q44) WILD-TYPE  234  670
     clus
vv    AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  NO                         24                         234
  YES                       100                         670
[1] 2 2
[1] FALSE
D4V6, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  4(1Q44) MUTATED            15                             2
  AMP PEAK  4(1Q44) WILD-TYPE         179                            28
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  4(1Q44) MUTATED                  5                10
  AMP PEAK  4(1Q44) WILD-TYPE              124               179
                             vv
clus                          TREATED PRIMARY GBM
  AMP PEAK  4(1Q44) MUTATED                     3
  AMP PEAK  4(1Q44) WILD-TYPE                  15
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  4(1Q44) MUTATED                                94
  AMP PEAK  4(1Q44) WILD-TYPE                             431
D4V7, multiclass
                                 clus
vv                                AMP PEAK  4(1Q44) MUTATED
  ASTROCYTOMA                                            15
  GLIOBLASTOMA MULTIFORME (GBM)                           2
  OLIGOASTROCYTOMA                                        5
  OLIGODENDROGLIOMA                                      10
  TREATED PRIMARY GBM                                     3
  UNTREATED PRIMARY (DE NOVO) GBM                        94
                                 clus
vv                                AMP PEAK  4(1Q44) WILD-TYPE
  ASTROCYTOMA                                             179
  GLIOBLASTOMA MULTIFORME (GBM)                            28
  OLIGOASTROCYTOMA                                        124
  OLIGODENDROGLIOMA                                       179
  TREATED PRIMARY GBM                                      15
  UNTREATED PRIMARY (DE NOVO) GBM                         431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  4(1Q44) MUTATED                                  0     4
  AMP PEAK  4(1Q44) WILD-TYPE                                1    17
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  4(1Q44) MUTATED                          10   107
  AMP PEAK  4(1Q44) WILD-TYPE                        61   852
D4V8, multiclass
                                  clus
vv                                 AMP PEAK  4(1Q44) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    4
  BLACK OR AFRICAN AMERICAN                               10
  WHITE                                                  107
                                  clus
vv                                 AMP PEAK  4(1Q44) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     17
  BLACK OR AFRICAN AMERICAN                                 61
  WHITE                                                    852
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V9, binary
                             cls
clus                            0   1
  AMP PEAK  4(1Q44) MUTATED     4 104
  AMP PEAK  4(1Q44) WILD-TYPE  40 817
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(1Q44) MUTATED      4  104
  AMP PEAK  4(1Q44) WILD-TYPE   40  817
                        clus
vv                       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  HISPANIC OR LATINO                             4                          40
  NOT HISPANIC OR LATINO                       104                         817
[1] 2 2
[1] FALSE

Clustering(5) Variable = AMP PEAK  5(2P24.3) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  5(2P24.3) MUTATED    23  48
  AMP PEAK  5(2P24.3) WILD-TYPE 457 550
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           71                          1007 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           48                           550 
$`AMP PEAK  5(2P24.3) MUTATED`
TCGA-06-6391 TCGA-06-5856 TCGA-12-3653 TCGA-14-0740 TCGA-14-1823 TCGA-14-3477 
        1.48         3.75        14.53        11.97        17.85         3.78 
TCGA-19-1786 TCGA-19-2629 TCGA-19-A60I TCGA-26-1439 TCGA-27-1834 TCGA-27-1836 
        7.17        24.23        17.79        13.87        40.54        30.05 
TCGA-32-4210 TCGA-41-2573 TCGA-74-6584 TCGA-DB-5274 TCGA-DH-A669 TCGA-DH-A7UR 
        3.72         8.94         7.50        75.25        30.21        54.25 
TCGA-DU-6407 TCGA-DU-8165 TCGA-E1-5304 TCGA-E1-A7YD TCGA-E1-A7YV TCGA-FG-A711 
       94.52        19.13        41.13        14.30        32.45        48.69 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A61B TCGA-HW-A5KM TCGA-P5-A5F2 
       15.72         0.23         0.13        17.52        20.71         7.96 
TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A7J0 TCGA-TM-A84Q TCGA-TQ-A7RK TCGA-VM-A8CA 
       24.39        19.86        20.02        25.38        44.09        13.51 
TCGA-VM-A8CD TCGA-VW-A8FI TCGA-02-0001 TCGA-02-0014 TCGA-02-0104 TCGA-02-0113 
        7.89         8.05        11.77        82.59        65.00        92.65 
TCGA-02-0258 TCGA-02-0281 TCGA-06-0133 TCGA-06-0151 TCGA-06-0192 TCGA-06-0216 
       16.54         3.98        14.30        46.59        38.96        24.16 
TCGA-06-0221 TCGA-06-0649 TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-2557 
       19.82         2.10         6.84         4.04        15.32         1.08 
TCGA-06-2569 TCGA-08-0346 TCGA-08-0386 TCGA-08-0510 TCGA-08-0517 TCGA-12-0619 
        0.43         8.42        18.02         4.27        58.68        34.92 
TCGA-12-0773 TCGA-12-0778 TCGA-12-1099 TCGA-14-0817 TCGA-14-0871 TCGA-16-0846 
       43.23        14.93         4.14         5.39        28.93         3.91 
TCGA-16-0850 TCGA-19-0957 TCGA-26-1442 TCGA-26-5133 TCGA-28-5218 
       16.37        21.90        31.33        14.86         5.16 

$`AMP PEAK  5(2P24.3) WILD-TYPE`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        3.98        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         2.73         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
       26.79         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       15.35        21.73        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       34.92        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 
        6.21        23.05        13.78         3.25         2.89        16.50 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       26.33        15.95         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.96         6.67        12.43         0.99         1.97        17.79 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       17.59        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
       21.24        13.97         6.41         8.61        14.27         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         3.65        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       28.54        10.03         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       24.23        21.30        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       16.77        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        4.77        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       25.18        21.14        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
        0.20        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 
        3.45        20.91         4.34        14.33         8.22         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 
       49.94        49.12       122.73        81.96        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 
       11.24        17.88        30.74        16.18        19.96        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US 
       46.06        24.59        27.81        17.19        17.19        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 
       11.64       133.74        19.89        16.83       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       22.29        11.41        26.76        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
        0.56        50.14        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       78.21        95.57       130.78        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ 
       19.46        12.43        16.18        21.30        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
       15.32         0.76        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       41.33        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 
       20.09        28.34        13.68        14.24        16.01        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       23.70        14.76        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       28.54        10.78        36.66         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       28.27        26.04        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       28.87        19.00        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 
        7.99         2.37         2.30         9.44         5.88         7.59 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 
       18.77        41.10        40.93        35.38        36.82        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        26.93        23.51        19.99         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S 
       24.16        40.83        24.79        33.24        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        45.93        43.20 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       23.21        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0003 
       45.80        46.88        37.71        20.81         7.63         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0015 
       18.35        23.18        10.59        35.41        20.71        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       87.06        77.65        20.12        53.10        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.18        99.98        15.65        48.95 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.93        17.72        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 
       22.72        33.67        12.95        25.35        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        17.79        10.09         8.61        19.46        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       13.94        10.45         3.19        10.82         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        3.42        56.91        10.65         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       44.58        15.42        10.42         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       15.02         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.82         9.01         0.26        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 
       16.57        20.78        26.76        23.93        26.79        11.84 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        33.90        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95        16.64         5.98         4.37        31.50 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
        7.79         5.39       120.56         7.36        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
        4.18       115.86         1.74        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
       15.35        13.97         0.72        12.56        42.15        11.08 
TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       19.59        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
       18.41         7.56        14.73        12.99        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        3.65        20.38        28.41        15.06        53.85         7.63 
TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.73        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82         7.59        33.21        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
        9.11        14.53         3.98         2.24        11.24         1.35 
TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        2.04        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-19-0955 TCGA-19-0962 TCGA-19-1385 
       53.19        13.28        26.07        11.77         0.66        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-5134 TCGA-26-5139 
        9.07         5.95        12.95         4.64         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
       13.64        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                         0.13                          0.03 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                        94.52                        211.17 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                        16.37                         15.98 
[1] "0.1 - 94.5 (16.4)"  "0.0 - 211.2 (16.0)"
[1] "hr=" "1.3"
D5V2, continuous
D5V3, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED    49  23
  AMP PEAK  5(2P24.3) WILD-TYPE 524 489
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED     49   23
  AMP PEAK  5(2P24.3) WILD-TYPE  524  489
                        clus
vv                       AMP PEAK  5(2P24.3) MUTATED
  BRAIN                                           49
  CENTRAL NERVOUS SYSTEM                          23
                        clus
vv                       AMP PEAK  5(2P24.3) WILD-TYPE
  BRAIN                                            524
  CENTRAL NERVOUS SYSTEM                           489
[1] 2 2
[1] FALSE
D5V4, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED    33  39
  AMP PEAK  5(2P24.3) WILD-TYPE 420 593
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED     33   39
  AMP PEAK  5(2P24.3) WILD-TYPE  420  593
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  FEMALE                          33                           420
  MALE                            39                           593
[1] 2 2
[1] FALSE
D5V5, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED    13  55
  AMP PEAK  5(2P24.3) WILD-TYPE 245 715
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED     13   55
  AMP PEAK  5(2P24.3) WILD-TYPE  245  715
     clus
vv    AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  NO                           13                           245
  YES                          55                           715
[1] 2 2
[1] FALSE
D5V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  5(2P24.3) MUTATED            12                             2
  AMP PEAK  5(2P24.3) WILD-TYPE         182                            28
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  5(2P24.3) MUTATED                  3                 8
  AMP PEAK  5(2P24.3) WILD-TYPE              126               181
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK  5(2P24.3) MUTATED                     1
  AMP PEAK  5(2P24.3) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  5(2P24.3) MUTATED                                46
  AMP PEAK  5(2P24.3) WILD-TYPE                             479
D5V7, multiclass
                                 clus
vv                                AMP PEAK  5(2P24.3) MUTATED
  ASTROCYTOMA                                              12
  GLIOBLASTOMA MULTIFORME (GBM)                             2
  OLIGOASTROCYTOMA                                          3
  OLIGODENDROGLIOMA                                         8
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          46
                                 clus
vv                                AMP PEAK  5(2P24.3) WILD-TYPE
  ASTROCYTOMA                                               182
  GLIOBLASTOMA MULTIFORME (GBM)                              28
  OLIGOASTROCYTOMA                                          126
  OLIGODENDROGLIOMA                                         181
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           479
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  5(2P24.3) MUTATED                                  0     1
  AMP PEAK  5(2P24.3) WILD-TYPE                                1    20
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  5(2P24.3) MUTATED                           6    62
  AMP PEAK  5(2P24.3) WILD-TYPE                        65   897
D5V8, multiclass
                                  clus
vv                                 AMP PEAK  5(2P24.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      1
  BLACK OR AFRICAN AMERICAN                                  6
  WHITE                                                     62
                                  clus
vv                                 AMP PEAK  5(2P24.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       20
  BLACK OR AFRICAN AMERICAN                                   65
  WHITE                                                      897
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V9, binary
                               cls
clus                              0   1
  AMP PEAK  5(2P24.3) MUTATED     3  59
  AMP PEAK  5(2P24.3) WILD-TYPE  41 862
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2P24.3) MUTATED      3   59
  AMP PEAK  5(2P24.3) WILD-TYPE   41  862
                        clus
vv                       AMP PEAK  5(2P24.3) MUTATED
  HISPANIC OR LATINO                               3
  NOT HISPANIC OR LATINO                          59
                        clus
vv                       AMP PEAK  5(2P24.3) WILD-TYPE
  HISPANIC OR LATINO                                41
  NOT HISPANIC OR LATINO                           862
[1] 2 2
[1] FALSE

Clustering(6) Variable = AMP PEAK  6(3Q26.33) MUTATION ANALYSIS
D6V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  6(3Q26.33) MUTATED    28 101
  AMP PEAK  6(3Q26.33) WILD-TYPE 452 497
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           129                            949 
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           101                            497 
$`AMP PEAK  6(3Q26.33) MUTATED`
TCGA-06-6391 TCGA-06-5408 TCGA-06-5416 TCGA-06-5856 TCGA-06-6695 TCGA-12-0615 
        1.48        11.74         6.71         3.75         8.32        15.35 
TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-14-0736 TCGA-14-0783 
       15.65         6.77        59.77        44.02        15.12         6.21 
TCGA-14-0812 TCGA-14-1451 TCGA-14-1453 TCGA-14-1794 TCGA-14-1825 TCGA-14-1829 
        3.25        23.11         1.15         0.99         7.63         7.17 
TCGA-14-3477 TCGA-19-0963 TCGA-19-1392 TCGA-19-2629 TCGA-19-4065 TCGA-26-1440 
        3.78        14.27         3.65        24.23         7.04         9.73 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1834 TCGA-27-1835 TCGA-27-2521 TCGA-28-1752 
        5.06        16.60        40.54        21.30        16.77         8.48 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1991 TCGA-32-2632 TCGA-41-2575 TCGA-41-3915 
        6.74         4.77        16.93         8.84         9.53        11.84 
TCGA-41-4097 TCGA-74-6577 TCGA-74-6584 TCGA-76-4934 TCGA-76-6285 TCGA-CS-5395 
        0.20         4.34         7.50         2.53         8.35        21.01 
TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-7013 TCGA-DU-8158 TCGA-DU-A5TW TCGA-E1-5304 
       46.06         1.22         8.84         5.10        24.99        41.13 
TCGA-E1-A7YD TCGA-E1-A7YL TCGA-FG-5962 TCGA-FG-7636 TCGA-FG-A6J3 TCGA-HT-7606 
       14.30        16.18        47.77        17.88        22.26        17.29 
TCGA-HT-7676 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-QH-A870 TCGA-S9-A6WM TCGA-TM-A84B 
        0.16         0.23        27.35        12.99        19.86        24.92 
TCGA-VW-A8FI TCGA-02-0001 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 TCGA-02-0047 
        8.05        11.77        10.59        87.06        77.65        14.73 
TCGA-02-0048 TCGA-02-0074 TCGA-02-0106 TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 
        3.22        10.19        11.67         3.98         7.73        10.62 
TCGA-02-0332 TCGA-06-0166 TCGA-06-0188 TCGA-06-0192 TCGA-06-0211 TCGA-06-0237 
       25.71         5.85        44.58        38.96        11.84        13.64 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0648 
        0.26         4.70         3.16        35.11        12.62         9.80 
TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0878 TCGA-06-1087 
        2.10        14.20        26.40         7.86         7.17         4.04 
TCGA-06-2557 TCGA-06-2563 TCGA-06-6389 TCGA-06-6694 TCGA-08-0345 TCGA-08-0346 
        1.08        30.64         7.79         7.36         1.74         8.42 
TCGA-08-0353 TCGA-08-0358 TCGA-08-0392 TCGA-08-0510 TCGA-08-0520 TCGA-08-0525 
        8.42        22.29         0.72         4.27        10.75        15.98 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 TCGA-12-0776 
       12.99        34.92         0.10        38.17        12.13         9.73 
TCGA-12-0778 TCGA-12-0822 TCGA-12-0827 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 
       14.93        23.51        38.76        20.58       127.59         7.59 
TCGA-12-1099 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-15-1449 TCGA-19-1388 
        4.14         1.35         5.39         2.04        13.28        12.95 
TCGA-26-6174 TCGA-28-5207 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
        2.33        11.28        31.27        11.01        13.64        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-76-6660 
       12.76         5.42         3.75 

$`AMP PEAK  6(3Q26.33) WILD-TYPE`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        3.98        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6697 TCGA-06-6698 
        2.73         6.15         4.57         5.23        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        1.55         4.77         4.96        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 
        2.56        14.60        17.72        21.73        25.68        14.73 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0790 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
       13.78         2.89        16.50        26.33        15.95         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 
        1.12         3.75        32.05        58.78         7.10        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.96         6.67        12.43         1.97        17.79 
TCGA-14-1823 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 
       17.85         5.88        17.49         7.96         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 TCGA-19-1390 TCGA-19-1786 
       13.97         6.41         8.61         3.39        25.38         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        7.53         0.16         4.08         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       13.87         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1832 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       19.33         9.86        24.23        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.76        18.08        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-32-1970 
        1.22         1.55         2.83         0.13         0.66        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        14.86        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
       15.95        22.78        25.18        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
        0.99         4.44        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 
       25.58         3.45        20.91        14.33         8.22         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.17        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
        3.29         2.70        17.06        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA 
       23.90        34.45        18.64        36.20         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55       117.50         7.69        43.89        36.36        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       40.18         0.26        53.62         6.38        17.69        26.76 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       37.38        46.95        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        19.96        63.88        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       75.16        65.75        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 
       29.85        31.69        24.43        26.17        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
        7.50        44.42        38.89         0.56        50.14        67.46 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YM 
       29.13        93.21         3.65        19.46        12.43        21.30 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23         0.20        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 
       14.93        42.54        41.33        18.44        15.35        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 
       28.54        10.78        36.66        48.69         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 
        5.03        29.85        23.18       122.47         4.57         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RB 
       15.72        26.04         0.13        20.22         0.07         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 
        0.10        56.58        45.44        41.49        68.32        69.27 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        28.87        20.71        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.96         7.59         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       16.70        11.08        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO 
       85.55        38.56        84.99        31.10        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        34.78        65.39        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 
       43.40        45.80        46.88        37.71        20.81         7.63 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        4.73        18.35        23.18        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       20.61        20.12        53.10        42.74        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       18.31         6.87        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       28.70        25.05         5.49        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        27.02        65.00        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        9.90         7.33        15.91         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 
       73.84        27.22        15.42        10.42         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 
        5.56         0.39         7.66         8.42         7.40         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        19.82        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0645 
       48.69        10.82         9.01        72.36         9.57         5.75 
TCGA-06-0646 TCGA-06-0650 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
        5.75        23.57        46.88         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       43.46        46.19        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 
       33.90        12.49         4.93        17.65        12.56         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6390 
       16.64         5.98         4.37         0.43        31.50         5.39 
TCGA-06-6693 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0347 
      120.56        22.68        37.84         4.18       115.86        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       12.16         9.80        29.23        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       24.56        31.10        37.58         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
       18.02        15.35        13.97        12.56        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       19.59        58.68        19.33         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0670 
        7.56        14.73        10.45         7.59        94.78        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       26.66         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
       43.23         7.63        14.86        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 
       10.62        27.78         8.94         5.82        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 
       12.23        15.85         9.11        14.53         3.98         2.24 
TCGA-14-0789 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
       11.24        28.93        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 
       19.10        53.19         3.91        26.07        16.37        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       21.90         0.66        10.75         9.07         5.95         4.64 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-28-2513 
       31.33        14.86         5.49         1.58         7.92         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 
        5.26        14.93        17.88        14.53        11.77        23.44 
TCGA-28-5218 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 
        5.16         7.36        11.38         5.42         1.61        17.72 
TCGA-87-5896 
       26.30 

  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                        127.59                         211.17 
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                         10.62                          16.93 
[1] "0.1 - 127.6 (10.6)" "0.0 - 211.2 (16.9)"
[1] "hr=" "2.3"
D6V2, continuous
D6V3, binary
                                cls
clus                               0   1
  AMP PEAK  6(3Q26.33) MUTATED   109  21
  AMP PEAK  6(3Q26.33) WILD-TYPE 464 491
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.33) MUTATED    109   21
  AMP PEAK  6(3Q26.33) WILD-TYPE  464  491
                        clus
vv                       AMP PEAK  6(3Q26.33) MUTATED
  BRAIN                                           109
  CENTRAL NERVOUS SYSTEM                           21
                        clus
vv                       AMP PEAK  6(3Q26.33) WILD-TYPE
  BRAIN                                             464
  CENTRAL NERVOUS SYSTEM                            491
[1] 2 2
[1] FALSE
D6V4, binary
                                cls
clus                               0   1
  AMP PEAK  6(3Q26.33) MUTATED    49  81
  AMP PEAK  6(3Q26.33) WILD-TYPE 404 551
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.33) MUTATED     49   81
  AMP PEAK  6(3Q26.33) WILD-TYPE  404  551
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  FEMALE                           49                            404
  MALE                             81                            551
[1] 2 2
[1] FALSE
D6V5, binary
                                cls
clus                               0   1
  AMP PEAK  6(3Q26.33) MUTATED    25  99
  AMP PEAK  6(3Q26.33) WILD-TYPE 233 671
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.33) MUTATED     25   99
  AMP PEAK  6(3Q26.33) WILD-TYPE  233  671
     clus
vv    AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  NO                            25                            233
  YES                           99                            671
[1] 2 2
[1] FALSE
D6V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  6(3Q26.33) MUTATED            15                             1
  AMP PEAK  6(3Q26.33) WILD-TYPE         179                            29
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  6(3Q26.33) MUTATED                  1                 5
  AMP PEAK  6(3Q26.33) WILD-TYPE              128               184
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK  6(3Q26.33) MUTATED                     0
  AMP PEAK  6(3Q26.33) WILD-TYPE                  18
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  6(3Q26.33) MUTATED                               108
  AMP PEAK  6(3Q26.33) WILD-TYPE                             417
D6V7, multiclass
                                 clus
vv                                AMP PEAK  6(3Q26.33) MUTATED
  ASTROCYTOMA                                               15
  GLIOBLASTOMA MULTIFORME (GBM)                              1
  OLIGOASTROCYTOMA                                           1
  OLIGODENDROGLIOMA                                          5
  TREATED PRIMARY GBM                                        0
  UNTREATED PRIMARY (DE NOVO) GBM                          108
                                 clus
vv                                AMP PEAK  6(3Q26.33) WILD-TYPE
  ASTROCYTOMA                                                179
  GLIOBLASTOMA MULTIFORME (GBM)                               29
  OLIGOASTROCYTOMA                                           128
  OLIGODENDROGLIOMA                                          184
  TREATED PRIMARY GBM                                         18
  UNTREATED PRIMARY (DE NOVO) GBM                            417
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  6(3Q26.33) MUTATED                                  0     0
  AMP PEAK  6(3Q26.33) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  6(3Q26.33) MUTATED                           9   113
  AMP PEAK  6(3Q26.33) WILD-TYPE                        62   846
D6V8, multiclass
                                  clus
vv                                 AMP PEAK  6(3Q26.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   9
  WHITE                                                     113
                                  clus
vv                                 AMP PEAK  6(3Q26.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    62
  WHITE                                                       846
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V9, binary
                                cls
clus                               0   1
  AMP PEAK  6(3Q26.33) MUTATED     1 103
  AMP PEAK  6(3Q26.33) WILD-TYPE  43 818
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.33) MUTATED      1  103
  AMP PEAK  6(3Q26.33) WILD-TYPE   43  818
                        clus
vv                       AMP PEAK  6(3Q26.33) MUTATED
  HISPANIC OR LATINO                                1
  NOT HISPANIC OR LATINO                          103
                        clus
vv                       AMP PEAK  6(3Q26.33) WILD-TYPE
  HISPANIC OR LATINO                                 43
  NOT HISPANIC OR LATINO                            818
[1] 2 2
[1] FALSE

Clustering(7) Variable = AMP PEAK  7(4P16.3) MUTATION ANALYSIS
D7V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  7(4P16.3) MUTATED    21  48
  AMP PEAK  7(4P16.3) WILD-TYPE 459 550
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           69                          1009 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           48                           550 
$`AMP PEAK  7(4P16.3) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-6388 TCGA-06-6697 TCGA-12-3650 TCGA-14-1795 
        3.98        51.55         5.23        12.85        10.95         1.97 
TCGA-14-1821 TCGA-14-2554 TCGA-14-3477 TCGA-16-1056 TCGA-19-1392 TCGA-19-5947 
       17.79        17.49         3.78        14.01         3.65         6.64 
TCGA-19-5958 TCGA-26-1439 TCGA-27-1835 TCGA-27-2521 TCGA-28-2506 TCGA-32-1982 
       14.07        13.87        21.30        16.77         6.74         4.67 
TCGA-32-1991 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-74-6578 TCGA-76-4925 
       16.93         9.53        11.84         0.20        14.33         4.80 
TCGA-CS-6186 TCGA-CS-6666 TCGA-DU-6407 TCGA-DU-7010 TCGA-DU-A5TS TCGA-DU-A5TT 
       17.69        46.95        94.52        14.99        31.69        24.43 
TCGA-E1-A7YQ TCGA-FG-7643 TCGA-FG-A4MY TCGA-FG-A87Q TCGA-HT-7477 TCGA-HT-7688 
       51.88        20.09        23.70         5.72        24.26        31.69 
TCGA-P5-A5EZ TCGA-S9-A6TU TCGA-S9-A6WM TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J2 
        2.30        87.12        19.86        19.99        20.02         2.04 
TCGA-TM-A84B TCGA-VM-A8CD TCGA-02-0011 TCGA-02-0021 TCGA-02-0055 TCGA-02-0074 
       24.92         7.89        20.71        77.65         2.50        10.19 
TCGA-02-0075 TCGA-02-0086 TCGA-02-0113 TCGA-06-0125 TCGA-06-0130 TCGA-06-0157 
       20.84         8.81        92.65        47.61        12.95         3.19 
TCGA-06-0195 TCGA-06-0409 TCGA-06-0410 TCGA-06-0744 TCGA-06-0879 TCGA-08-0246 
        7.40        72.36         4.70        46.88        40.41         4.18 
TCGA-08-0510 TCGA-08-0531 TCGA-12-0616 TCGA-12-0691 TCGA-12-0820 TCGA-12-0826 
        4.27         7.56        14.73        12.13        18.48        27.78 
TCGA-16-0846 TCGA-19-1387 TCGA-28-5215 
        3.91         5.95        11.01 

$`AMP PEAK  7(4P16.3) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6695 
        6.71         2.73         3.75         6.15         4.57         8.32 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96        26.79         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 
        3.12         2.56        14.60        17.72        15.35        21.73 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       15.65        25.68        14.73         6.77        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       26.93        15.22        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       23.05        13.78         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.18         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        6.67        12.43         0.99        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.17         7.96         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 
       10.29         9.14        21.24        13.97         6.41         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       14.27         3.39        25.38         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 
        4.08        24.23         7.00         7.04        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 
       18.90         4.73        12.10         1.78        22.49        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 
       14.96        17.79        28.54        10.03         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 
       16.60         9.86        24.23        40.54        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.76        18.08        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        0.66         4.77        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 
       15.85        19.50         1.18        12.69        14.86        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 
        0.85        13.35         8.94         0.99         4.44        15.12 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       12.46         4.08         1.45        25.58         3.45        20.91 
TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        4.34         8.22         7.50         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
      117.50         7.69        43.89        36.36        60.10        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6188 TCGA-CS-6290 
        0.26        21.01        53.62         6.38        26.76        37.38 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
       78.28        46.42        18.84        30.21        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       19.96        63.88        46.06        24.59        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       19.89        16.83       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       62.96       156.23       154.36       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       29.85        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       95.11        20.98        22.29        11.41        26.76        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
       44.42        38.89         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       16.18        21.30        75.02        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 
       15.35        17.88        22.55        20.61        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       10.72        18.38        18.71        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.14        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        68.32        69.27        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54        24.92        31.63        12.76        28.87        20.71 
TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       19.00        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.37         9.44         5.88         7.96         7.59         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TV TCGA-S9-A6TW 
        2.07        19.59        30.67        62.17        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       40.93        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       26.93        23.51         8.19        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       49.32        34.78        65.39        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
        4.73        18.35        23.18        10.59        35.41        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        20.12        53.10        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 
       19.73        26.43        28.70        25.05         5.49        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        12.62        51.32        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        6.15        20.38         6.94         3.98        22.72        33.67 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
       10.45        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         4.67         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        8.42         7.40        11.84         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.72        19.82        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       10.82         9.01         0.26         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        26.40         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       43.46        46.19         7.17        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       23.93         6.84         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 
        0.43        31.50         7.79         5.39       120.56         7.36 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        37.84       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
       12.23        14.93        18.02        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0618 
       10.75         4.80         7.27        15.98        18.41        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       25.97        26.66         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       91.76        24.79        10.62        23.51        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
       20.58       127.59         5.82         7.59        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       12.23        15.85         9.11        14.53         3.98         4.14 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 
        2.24        11.24         1.35         5.39         2.04        28.93 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
       19.30         0.79        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       13.28        26.07        16.37        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 
       10.75         9.07        12.95         4.64        31.33        14.86 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 
        5.49         1.58         7.92         2.33         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       23.44        13.64         5.16        22.68        12.76         5.42 
TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        7.36        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                         0.20                          0.03 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                        94.52                        211.17 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                        14.07                         16.08 
[1] "0.2 - 94.5 (14.1)"  "0.0 - 211.2 (16.1)"
[1] "hr=" "1.5"
D7V2, continuous
D7V3, binary
                               cls
clus                              0   1
  AMP PEAK  7(4P16.3) MUTATED    48  21
  AMP PEAK  7(4P16.3) WILD-TYPE 525 491
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4P16.3) MUTATED     48   21
  AMP PEAK  7(4P16.3) WILD-TYPE  525  491
                        clus
vv                       AMP PEAK  7(4P16.3) MUTATED
  BRAIN                                           48
  CENTRAL NERVOUS SYSTEM                          21
                        clus
vv                       AMP PEAK  7(4P16.3) WILD-TYPE
  BRAIN                                            525
  CENTRAL NERVOUS SYSTEM                           491
[1] 2 2
[1] FALSE
D7V4, binary
                               cls
clus                              0   1
  AMP PEAK  7(4P16.3) MUTATED    32  37
  AMP PEAK  7(4P16.3) WILD-TYPE 421 595
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4P16.3) MUTATED     32   37
  AMP PEAK  7(4P16.3) WILD-TYPE  421  595
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  FEMALE                          32                           421
  MALE                            37                           595
[1] 2 2
[1] FALSE
D7V5, binary
                               cls
clus                              0   1
  AMP PEAK  7(4P16.3) MUTATED     9  57
  AMP PEAK  7(4P16.3) WILD-TYPE 249 713
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4P16.3) MUTATED      9   57
  AMP PEAK  7(4P16.3) WILD-TYPE  249  713
     clus
vv    AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  NO                            9                           249
  YES                          57                           713
[1] 2 2
[1] FALSE
D7V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  7(4P16.3) MUTATED            11                             1
  AMP PEAK  7(4P16.3) WILD-TYPE         183                            29
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  7(4P16.3) MUTATED                  3                 7
  AMP PEAK  7(4P16.3) WILD-TYPE              126               182
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK  7(4P16.3) MUTATED                     1
  AMP PEAK  7(4P16.3) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  7(4P16.3) MUTATED                                46
  AMP PEAK  7(4P16.3) WILD-TYPE                             479
D7V7, multiclass
                                 clus
vv                                AMP PEAK  7(4P16.3) MUTATED
  ASTROCYTOMA                                              11
  GLIOBLASTOMA MULTIFORME (GBM)                             1
  OLIGOASTROCYTOMA                                          3
  OLIGODENDROGLIOMA                                         7
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          46
                                 clus
vv                                AMP PEAK  7(4P16.3) WILD-TYPE
  ASTROCYTOMA                                               183
  GLIOBLASTOMA MULTIFORME (GBM)                              29
  OLIGOASTROCYTOMA                                          126
  OLIGODENDROGLIOMA                                         182
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           479
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  7(4P16.3) MUTATED                                  0     0
  AMP PEAK  7(4P16.3) WILD-TYPE                                1    21
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  7(4P16.3) MUTATED                           6    62
  AMP PEAK  7(4P16.3) WILD-TYPE                        65   897
D7V8, multiclass
                                  clus
vv                                 AMP PEAK  7(4P16.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      0
  BLACK OR AFRICAN AMERICAN                                  6
  WHITE                                                     62
                                  clus
vv                                 AMP PEAK  7(4P16.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       21
  BLACK OR AFRICAN AMERICAN                                   65
  WHITE                                                      897
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V9, binary
                               cls
clus                              0   1
  AMP PEAK  7(4P16.3) MUTATED     2  61
  AMP PEAK  7(4P16.3) WILD-TYPE  42 860
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4P16.3) MUTATED      2   61
  AMP PEAK  7(4P16.3) WILD-TYPE   42  860
                        clus
vv                       AMP PEAK  7(4P16.3) MUTATED
  HISPANIC OR LATINO                               2
  NOT HISPANIC OR LATINO                          61
                        clus
vv                       AMP PEAK  7(4P16.3) WILD-TYPE
  HISPANIC OR LATINO                                42
  NOT HISPANIC OR LATINO                           860
[1] 2 2
[1] FALSE

Clustering(8) Variable = AMP PEAK  8(4Q12) MUTATION ANALYSIS
D8V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  8(4Q12) MUTATED    36 102
  AMP PEAK  8(4Q12) WILD-TYPE 444 496
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                        138                         940 
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                        102                         496 
$`AMP PEAK  8(4Q12) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-5408 TCGA-06-5856 TCGA-06-6695 TCGA-12-3646 
        3.98        51.55        11.74         3.75         8.32        44.02 
TCGA-14-0740 TCGA-14-0812 TCGA-14-0865 TCGA-14-1455 TCGA-14-1821 TCGA-14-1825 
       11.97         3.25        16.50         0.92        17.79         7.63 
TCGA-14-1829 TCGA-14-3477 TCGA-16-0848 TCGA-19-0960 TCGA-19-0963 TCGA-19-1390 
        7.17         3.78        17.59         8.61        14.27        25.38 
TCGA-19-1392 TCGA-19-2631 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-5132 
        3.65         7.00        17.79        10.03        13.87         9.40 
TCGA-26-5135 TCGA-27-1830 TCGA-27-1834 TCGA-28-2506 TCGA-32-1973 TCGA-32-1976 
        8.88         5.06        40.54         6.74        21.07         0.49 
TCGA-32-1977 TCGA-32-1991 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2575 
        0.10        16.93         3.72        12.59        19.23         9.53 
TCGA-41-3915 TCGA-41-4097 TCGA-4W-AA9R TCGA-74-6575 TCGA-76-4928 TCGA-76-4934 
       11.84         0.20         4.08        20.91         3.09         2.53 
TCGA-76-4935 TCGA-76-6193 TCGA-RR-A6KA TCGA-CS-4943 TCGA-CS-6666 TCGA-DB-5277 
       36.85         2.70         6.28        36.36        46.95        50.86 
TCGA-DB-A75O TCGA-DH-A7UU TCGA-DU-7010 TCGA-DU-7302 TCGA-DU-7309 TCGA-DU-A5TS 
       30.74        13.71        14.99        60.30         2.76        31.69 
TCGA-DU-A5TT TCGA-DU-A7TD TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-A7YD TCGA-E1-A7YI 
       24.43         7.50        41.13        57.93        14.30         3.65 
TCGA-E1-A7YL TCGA-FG-A6J3 TCGA-FG-A87Q TCGA-HT-7477 TCGA-HT-7856 TCGA-HT-7882 
       16.18        22.26         5.72        24.26        39.09         3.72 
TCGA-HT-A5R7 TCGA-S9-A6U0 TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7J0 TCGA-S9-A89Z 
       20.22        24.39        14.07         7.92        20.02        20.48 
TCGA-TM-A84I TCGA-VW-A8FI TCGA-02-0014 TCGA-02-0024 TCGA-02-0055 TCGA-02-0069 
       28.08         8.05        82.59        53.10         2.50        28.70 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0113 TCGA-02-0281 TCGA-02-0285 
       10.19        20.84        27.25        92.65         3.98        13.87 
TCGA-02-0289 TCGA-02-0339 TCGA-02-0440 TCGA-02-0446 TCGA-02-2485 TCGA-06-0130 
       14.20        12.39        11.34         9.27        15.45        12.95 
TCGA-06-0138 TCGA-06-0143 TCGA-06-0155 TCGA-06-0166 TCGA-06-0171 TCGA-06-0173 
       24.23        11.74        10.45         5.85        13.12         4.47 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0192 TCGA-06-0195 TCGA-06-0210 TCGA-06-0211 
        3.22         4.18        38.96         7.40         7.40        11.84 
TCGA-06-0214 TCGA-06-0221 TCGA-06-0241 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       15.02        19.82        48.69         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0649 TCGA-06-0743 TCGA-06-0875 TCGA-06-0879 TCGA-06-1802 
        9.57         2.10        26.40        43.46        40.41        15.32 
TCGA-06-2559 TCGA-08-0245 TCGA-08-0246 TCGA-08-0347 TCGA-08-0353 TCGA-08-0510 
        4.93        37.84         4.18        25.71         8.42         4.27 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0524 TCGA-08-0531 TCGA-12-0616 TCGA-12-0692 
       11.08        19.59         7.27         7.56        14.73         3.65 
TCGA-12-0828 TCGA-12-1096 TCGA-12-1097 TCGA-14-0817 TCGA-16-0846 TCGA-19-0957 
        8.94         9.11        14.53         5.39         3.91        21.90 
TCGA-19-1387 TCGA-19-1388 TCGA-26-5134 TCGA-28-5211 TCGA-28-5215 TCGA-28-5216 
        5.95        12.95         5.49        11.77        11.01        13.64 

$`AMP PEAK  8(4Q12) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5410 
       21.40        45.60        42.77        59.38        15.32         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6697 TCGA-06-6698 
        2.73         6.15         4.57         5.23        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        1.55         4.77         4.96        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 
        2.56        14.60        17.72        15.35        21.73        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       25.68        14.73         6.77        59.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 
        2.04        15.12         0.95         6.21        23.05        13.78 
TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
        2.89        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 
       40.96         6.67        12.43         0.99         1.97        17.85 
TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-1045 TCGA-16-1047 
        5.88        17.49         7.96         3.42        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0964 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.39         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A6J5 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5136 TCGA-26-A7UX 
       28.54         9.73         7.13         9.37        18.97        19.33 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.60         9.86        24.23        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        16.77        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-32-1970 TCGA-32-1978 TCGA-32-1979 
        0.13         0.66         4.77        15.39        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        14.86        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 
       19.86        10.85         0.85        13.35         8.94         0.99 
TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        4.44        15.12        12.46         1.45        25.58         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.34        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4929 TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 
        3.65         9.17        16.70         3.29        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       36.20         5.92        20.55       117.50         7.69        43.89 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       60.10        40.18         0.26        21.01        53.62         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.69        26.76        37.38        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
      122.73        81.96        75.25        47.93        72.92        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        19.96        63.88        46.06        24.59        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23       154.36       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 
        7.96        94.32        18.94        44.02        25.91        23.31 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
       20.98        22.29        11.41        26.76        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TI 
      139.04        84.33        51.52        37.38        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 
        0.56        50.14        67.46        79.99       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK 
       95.57       130.78        29.13        93.21        19.46        12.43 
TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       21.30        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       13.68        14.24        16.01        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       21.53        15.02        16.44        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
       48.69        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       19.23         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
        0.33         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 
       28.27        15.72         0.23        26.04         0.13         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.14        16.83        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       68.32        69.27        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       24.92        31.63        12.76        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         9.44         5.88         7.96         7.59         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       41.10        40.93        35.38        36.82        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IX 
       19.86        26.47        18.61        18.64        36.13        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       23.51        19.99         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 
       30.05        98.63        31.59        18.71        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       23.21        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        77.65        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0080 TCGA-02-0083 
       19.73        26.43        25.05         5.49        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       27.02        65.00        11.67        17.65        23.18        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.47        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       14.50        10.55        47.11        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.32        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 
       47.61         6.94         3.98        22.72        33.67        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       14.30        26.70        11.90         0.20        10.29         2.20 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        12.33        13.94         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         3.42        56.91        10.65        19.66         3.29 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
        4.04        91.00        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       73.84        27.22        44.58        15.42        10.42         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0213 TCGA-06-0216 
        5.56         0.39         7.66         8.42         0.53        24.16 
TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0397 
        0.72        13.64        13.32        20.42        10.82         9.01 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57        14.20        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0876 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        0.92        46.19         7.17        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 
       23.93         6.84         4.04        26.79        11.84        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08        12.49        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0344 
        7.79         5.39       120.56         7.36        22.68       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        1.74         8.42        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        0.72        12.56        42.15        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        4.80        15.98        18.41        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
       12.13        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0829 
       18.48        10.62        23.51        27.78        38.76        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
      127.59         5.82         7.59        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
       15.85         3.98         4.14         2.24        11.24         1.35 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
        2.04        28.93        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 
       19.10        53.19        13.28        26.07        16.37        11.77 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 
        0.66        10.75         9.07         4.64        31.33        14.86 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        1.58         7.92         2.33         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 
       11.28        17.88        14.53        31.27        23.44         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 
       22.68        12.76         5.42         7.36        11.38         5.42 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        3.75         1.61        17.72        26.30 

  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                       0.10                        0.03 
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                      92.65                      211.17 
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                     11.905                      16.700 
[1] "0.1 - 92.7 (11.9)"  "0.0 - 211.2 (16.7)"
[1] "hr=" "1.9"
D8V2, continuous
D8V3, binary
                             cls
clus                            0   1
  AMP PEAK  8(4Q12) MUTATED   108  30
  AMP PEAK  8(4Q12) WILD-TYPE 465 482
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(4Q12) MUTATED    108   30
  AMP PEAK  8(4Q12) WILD-TYPE  465  482
                        clus
vv                       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  BRAIN                                        108                         465
  CENTRAL NERVOUS SYSTEM                        30                         482
[1] 2 2
[1] FALSE
D8V4, binary
                             cls
clus                            0   1
  AMP PEAK  8(4Q12) MUTATED    50  88
  AMP PEAK  8(4Q12) WILD-TYPE 403 544
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(4Q12) MUTATED     50   88
  AMP PEAK  8(4Q12) WILD-TYPE  403  544
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  FEMALE                        50                         403
  MALE                          88                         544
[1] 2 2
[1] FALSE
D8V5, binary
                             cls
clus                            0   1
  AMP PEAK  8(4Q12) MUTATED    25 108
  AMP PEAK  8(4Q12) WILD-TYPE 233 662
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(4Q12) MUTATED     25  108
  AMP PEAK  8(4Q12) WILD-TYPE  233  662
     clus
vv    AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  NO                         25                         233
  YES                       108                         662
[1] 2 2
[1] FALSE
D8V6, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  8(4Q12) MUTATED            21                             4
  AMP PEAK  8(4Q12) WILD-TYPE         173                            26
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  8(4Q12) MUTATED                  2                 7
  AMP PEAK  8(4Q12) WILD-TYPE              127               182
                             vv
clus                          TREATED PRIMARY GBM
  AMP PEAK  8(4Q12) MUTATED                     2
  AMP PEAK  8(4Q12) WILD-TYPE                  16
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  8(4Q12) MUTATED                               102
  AMP PEAK  8(4Q12) WILD-TYPE                             423
D8V7, multiclass
                                 clus
vv                                AMP PEAK  8(4Q12) MUTATED
  ASTROCYTOMA                                            21
  GLIOBLASTOMA MULTIFORME (GBM)                           4
  OLIGOASTROCYTOMA                                        2
  OLIGODENDROGLIOMA                                       7
  TREATED PRIMARY GBM                                     2
  UNTREATED PRIMARY (DE NOVO) GBM                       102
                                 clus
vv                                AMP PEAK  8(4Q12) WILD-TYPE
  ASTROCYTOMA                                             173
  GLIOBLASTOMA MULTIFORME (GBM)                            26
  OLIGOASTROCYTOMA                                        127
  OLIGODENDROGLIOMA                                       182
  TREATED PRIMARY GBM                                      16
  UNTREATED PRIMARY (DE NOVO) GBM                         423
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  8(4Q12) MUTATED                                  0     1
  AMP PEAK  8(4Q12) WILD-TYPE                                1    20
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  8(4Q12) MUTATED                          12   122
  AMP PEAK  8(4Q12) WILD-TYPE                        59   837
D8V8, multiclass
                                  clus
vv                                 AMP PEAK  8(4Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    1
  BLACK OR AFRICAN AMERICAN                               12
  WHITE                                                  122
                                  clus
vv                                 AMP PEAK  8(4Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     20
  BLACK OR AFRICAN AMERICAN                                 59
  WHITE                                                    837
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V9, binary
                             cls
clus                            0   1
  AMP PEAK  8(4Q12) MUTATED     3 118
  AMP PEAK  8(4Q12) WILD-TYPE  41 803
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(4Q12) MUTATED      3  118
  AMP PEAK  8(4Q12) WILD-TYPE   41  803
                        clus
vv                       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  HISPANIC OR LATINO                             3                          41
  NOT HISPANIC OR LATINO                       118                         803
[1] 2 2
[1] FALSE

Clustering(9) Variable = AMP PEAK  9(5P15.33) MUTATION ANALYSIS
D9V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  9(5P15.33) MUTATED    19  57
  AMP PEAK  9(5P15.33) WILD-TYPE 461 541
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                            76                           1002 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                            57                            541 
$`AMP PEAK  9(5P15.33) MUTATED`
TCGA-19-A6J4 TCGA-06-1806 TCGA-06-5856 TCGA-12-1602 TCGA-12-3646 TCGA-14-1396 
        3.98        15.32         3.75         6.77        44.02         1.12 
TCGA-14-1823 TCGA-19-5954 TCGA-28-2506 TCGA-28-2509 TCGA-32-1973 TCGA-32-1982 
       17.85        12.10         6.74         4.77        21.07         4.67 
TCGA-32-2495 TCGA-32-2632 TCGA-32-4210 TCGA-41-2575 TCGA-74-6575 TCGA-76-4934 
       15.02         8.84         3.72         9.53        20.91         2.53 
TCGA-DB-5281 TCGA-DU-A5TT TCGA-E1-A7YD TCGA-E1-A7YQ TCGA-F6-A8O4 TCGA-FG-5963 
       78.28        24.43        14.30        51.88         0.20        25.48 
TCGA-HT-7477 TCGA-HT-A61B TCGA-HW-8321 TCGA-QH-A65S TCGA-QH-A6CV TCGA-S9-A6TS 
       24.26        17.52        42.54         2.53        14.53        62.17 
TCGA-S9-A6WP TCGA-TM-A7C3 TCGA-VM-A8C9 TCGA-VW-A8FI TCGA-06-0209 TCGA-02-0001 
       18.64        54.77        43.20         8.05         7.63        11.77 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 TCGA-02-0051 TCGA-02-0054 TCGA-02-0059 
       53.10        42.74        90.58        15.09         6.54         9.57 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 
       20.84        27.25         8.81        11.67        92.65        17.72 
TCGA-02-0324 TCGA-02-0456 TCGA-06-0151 TCGA-06-0195 TCGA-06-0237 TCGA-06-0397 
        7.73         3.35        46.59         7.40        13.64         9.01 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0645 TCGA-06-0649 TCGA-06-2557 TCGA-06-2564 
       72.36         4.70         5.75         2.10         1.08         5.95 
TCGA-08-0350 TCGA-08-0510 TCGA-08-0518 TCGA-08-0524 TCGA-12-0691 TCGA-12-0772 
       29.23         4.27        19.33         7.27        12.13        53.85 
TCGA-12-0778 TCGA-12-0826 TCGA-12-0827 TCGA-12-1096 TCGA-12-1098 TCGA-15-1447 
       14.93        27.78        38.76         9.11         3.98        53.19 
TCGA-19-0955 TCGA-28-5211 TCGA-28-5216 TCGA-32-2616 
       11.77        11.77        13.64         7.36 

$`AMP PEAK  9(5P15.33) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 
       18.64        21.40        45.60        42.77        59.38        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        6.71         2.73         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
        1.87         3.12         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 
       21.73        15.65        25.68        14.73        59.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       23.05        13.78         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       15.95         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.79         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 
        7.17        17.49         7.96         3.78         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 
       13.97         6.41         8.61        14.27         3.39        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
       17.79        28.54        10.03        13.87         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        16.77        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 
        2.83         0.13         0.66        15.39         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       15.85        19.50         1.18        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       12.23        20.78        15.95        22.78        25.18        21.14 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        8.94         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 
       12.46         4.08         1.45        25.58         3.45         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.17        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
      117.50         7.69        43.89        36.36        60.10        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.26        21.01        53.62         6.38        17.69        26.76 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       37.38        46.95        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       44.52        36.56        46.42        18.84        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        19.96        63.88        46.06        24.59        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU 
       15.48        14.17        33.27        29.85        31.69        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       22.29        11.41        26.76        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH 
      134.27        78.21        95.57       130.78        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO 
        3.65        19.46        12.43        16.18        21.30        75.02 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 
       73.48       145.05        32.35        39.48         0.23        47.77 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75        17.42         6.54         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.14        16.83        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ 
       69.27        35.44        39.75        40.01        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        28.87        20.71        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.96         7.59         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
       15.16        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50        16.70        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        9.90        28.08         2.07        19.59        30.67        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ 
       84.99        31.10        19.86        26.47        18.61        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        18.71        20.48        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       31.36        45.93        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 
       20.02        23.47        37.05        16.01        23.21        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
       37.71        20.81         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       20.12        24.59        12.16         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 
       12.59         2.50        19.86         8.35         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 
       26.43        28.70        25.05         5.49        10.19        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        12.62        51.32        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       27.02        65.00        17.65        23.18        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       48.95        16.54        16.93        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 
       13.87        14.20        15.95        12.23         9.90        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.53        15.02        24.16         0.72        19.82        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 
       20.42        48.69        10.82         0.26         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       35.11        12.62         5.75         9.80        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       26.76        23.93         6.84         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       15.32        13.61        33.90        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
       31.50         7.79         5.39       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       12.16         9.80        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       14.93        18.02        15.35        13.97         0.72        12.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 
       42.15        11.08        19.59        58.68        10.75         4.80 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        18.41         7.56        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 
       26.66         3.65        20.38        28.41        15.06        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        7.63         9.73        14.86        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       10.62        23.51         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 
        7.59        33.21        15.98        12.23        15.85        14.53 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0957 TCGA-19-0962 
       13.28         3.91        26.07        16.37        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 
       10.75         9.07         5.95        12.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       14.86         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 
        5.26        14.93        11.28        17.88        14.53        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       23.44        11.01         5.16        22.68        12.76         5.42 
TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       11.38         5.42         3.75         1.61        17.72        26.30 

  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                          0.20                           0.03 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                         92.65                         211.17 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                        12.885                         16.195 
[1] "0.2 - 92.7 (12.9)"  "0.0 - 211.2 (16.2)"
[1] "hr=" "1.6"
D9V2, continuous
D9V3, binary
                                cls
clus                               0   1
  AMP PEAK  9(5P15.33) MUTATED    60  16
  AMP PEAK  9(5P15.33) WILD-TYPE 513 496
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(5P15.33) MUTATED     60   16
  AMP PEAK  9(5P15.33) WILD-TYPE  513  496
                        clus
vv                       AMP PEAK  9(5P15.33) MUTATED
  BRAIN                                            60
  CENTRAL NERVOUS SYSTEM                           16
                        clus
vv                       AMP PEAK  9(5P15.33) WILD-TYPE
  BRAIN                                             513
  CENTRAL NERVOUS SYSTEM                            496
[1] 2 2
[1] FALSE
D9V4, binary
                                cls
clus                               0   1
  AMP PEAK  9(5P15.33) MUTATED    35  41
  AMP PEAK  9(5P15.33) WILD-TYPE 418 591
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(5P15.33) MUTATED     35   41
  AMP PEAK  9(5P15.33) WILD-TYPE  418  591
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  FEMALE                           35                            418
  MALE                             41                            591
[1] 2 2
[1] FALSE
D9V5, binary
                                cls
clus                               0   1
  AMP PEAK  9(5P15.33) MUTATED    12  59
  AMP PEAK  9(5P15.33) WILD-TYPE 246 711
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(5P15.33) MUTATED     12   59
  AMP PEAK  9(5P15.33) WILD-TYPE  246  711
     clus
vv    AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  NO                            12                            246
  YES                           59                            711
[1] 2 2
[1] FALSE
D9V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK  9(5P15.33) MUTATED            10                             3
  AMP PEAK  9(5P15.33) WILD-TYPE         184                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK  9(5P15.33) MUTATED                  4                 2
  AMP PEAK  9(5P15.33) WILD-TYPE              125               187
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK  9(5P15.33) MUTATED                     4
  AMP PEAK  9(5P15.33) WILD-TYPE                  14
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK  9(5P15.33) MUTATED                                53
  AMP PEAK  9(5P15.33) WILD-TYPE                             472
D9V7, multiclass
                                 clus
vv                                AMP PEAK  9(5P15.33) MUTATED
  ASTROCYTOMA                                               10
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           4
  OLIGODENDROGLIOMA                                          2
  TREATED PRIMARY GBM                                        4
  UNTREATED PRIMARY (DE NOVO) GBM                           53
                                 clus
vv                                AMP PEAK  9(5P15.33) WILD-TYPE
  ASTROCYTOMA                                                184
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           125
  OLIGODENDROGLIOMA                                          187
  TREATED PRIMARY GBM                                         14
  UNTREATED PRIMARY (DE NOVO) GBM                            472
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK  9(5P15.33) MUTATED                                  0     3
  AMP PEAK  9(5P15.33) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  9(5P15.33) MUTATED                           6    63
  AMP PEAK  9(5P15.33) WILD-TYPE                        65   896
D9V8, multiclass
                                  clus
vv                                 AMP PEAK  9(5P15.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                   6
  WHITE                                                      63
                                  clus
vv                                 AMP PEAK  9(5P15.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    65
  WHITE                                                       896
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V9, binary
                                cls
clus                               0   1
  AMP PEAK  9(5P15.33) MUTATED     3  65
  AMP PEAK  9(5P15.33) WILD-TYPE  41 856
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(5P15.33) MUTATED      3   65
  AMP PEAK  9(5P15.33) WILD-TYPE   41  856
                        clus
vv                       AMP PEAK  9(5P15.33) MUTATED
  HISPANIC OR LATINO                                3
  NOT HISPANIC OR LATINO                           65
                        clus
vv                       AMP PEAK  9(5P15.33) WILD-TYPE
  HISPANIC OR LATINO                                 41
  NOT HISPANIC OR LATINO                            856
[1] 2 2
[1] FALSE

Clustering(10) Variable = AMP PEAK 10(7P11.2) MUTATION ANALYSIS
D10V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 10(7P11.2) MUTATED   149 478
  AMP PEAK 10(7P11.2) WILD-TYPE 331 120
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          627                           451 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          478                           120 
$`AMP PEAK 10(7P11.2) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-E1-A7YN TCGA-HT-A619 TCGA-06-1806 
        3.98        51.55        46.88        23.90        21.40        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 
        8.32        12.85         4.77         1.55         4.77         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 
        3.12         2.56        14.60        15.35        21.73        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.04        15.12         0.95         6.21        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
       13.78         3.25         2.89        26.33        15.95         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
       17.49         7.96         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0963 TCGA-19-0964 
       10.29         9.14        21.24        13.97        14.27         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 
        9.67         4.87         1.08         7.53         0.16        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
       17.79        28.54        10.03        13.87         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        18.08        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        8.35         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 
        0.66         6.74         4.77        15.39         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       25.18         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
       11.84        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       36.85        16.70         3.29        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5393 
        5.92         6.28        20.55         7.69        43.89        40.18 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5270 
       21.01        53.62         6.38        17.69        26.76       122.73 
TCGA-DB-A4X9 TCGA-DB-A4XE TCGA-DB-A64O TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A66G 
       46.42        37.45        25.48        63.88        30.21        17.19 
TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6395 
       17.46        18.61         6.74         8.45       211.17        49.02 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        1.22         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       94.52         7.96        11.47       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7292 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
      117.40        90.77         7.96         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU 
       20.68        19.13        16.96        29.85        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7TA TCGA-DU-A7TD 
       24.99        33.96        11.41        26.76        84.33         7.50 
TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YJ TCGA-E1-A7YL 
        0.56        41.13       130.78        14.30        19.46        16.18 
TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7Z2 TCGA-FG-5962 TCGA-FG-6688 TCGA-FG-6691 
       21.30        51.88        13.08        47.77        18.77        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-A4MU TCGA-FG-A4MW 
       18.44        15.35        20.09        13.68        10.72        18.38 
TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7688 TCGA-HT-7860 
       10.78         5.72        16.54        24.26        31.69         0.49 
TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8110 TCGA-HT-8564 
        3.72        16.24        63.55        12.23        13.78        15.72 
TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 
        0.23         0.13         0.07        27.35         5.33        16.14 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HW-A5KK TCGA-KT-A7W1 
       17.65         2.43        10.52        15.35        12.76        14.40 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A72U TCGA-P5-A736 TCGA-QH-A6CS TCGA-QH-A6CV 
        2.30         9.44         0.23         7.56        19.33        14.53 
TCGA-QH-A6CX TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-RY-A845 TCGA-S9-A6TY 
       12.23         1.91        16.50        16.70        19.59        35.38 
TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 
       24.39        19.86        36.13        26.93        19.99        20.02 
TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H TCGA-TM-A84M 
       10.39        54.77        34.78        24.92        30.44        24.79 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-VW-A8FI TCGA-WY-A85E 
       15.98         2.04        36.69        30.05         8.05        20.81 
TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
        7.63        11.77         4.73        18.35        23.18        10.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 
       20.61        87.06        77.65        20.12        42.74        12.16 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
        2.83        14.14         3.62        10.72        18.31         6.87 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        9.57        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 
       10.19        20.84        27.25        22.72        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 
       57.76        16.96         3.48        27.02        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 
       23.18        92.65        15.65        48.95        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
       25.71         4.37        25.12        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
        9.27        16.21         3.35        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        22.72        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        56.91         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 
        4.47         3.22         4.04        91.00         4.18        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 
       26.79        11.84        15.32        13.61         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2567 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
        4.37         5.39       120.56         7.36        22.68        37.84 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
        4.18         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 
       13.97         0.72        12.56         4.27        11.08        19.33 
TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
       10.75        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.86        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       28.93        19.30         0.79        13.78        19.10        13.28 
TCGA-16-0846 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
        3.91        11.77        21.90         0.66        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.95        12.95         4.64         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77        31.27        23.44        11.01         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       12.76         5.42         7.36        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

$`AMP PEAK 10(7P11.2) WILD-TYPE`
TCGA-06-6391 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O 
        1.48        46.72        31.82        42.05        62.01        17.16 
TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 
       20.09        17.82        20.45        18.64        45.60        42.77 
TCGA-R8-A73M TCGA-06-5416 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TL TCGA-14-0740 
       59.38         6.71         4.96        26.79        17.72        11.97 
TCGA-14-0865 TCGA-14-1821 TCGA-14-3477 TCGA-16-1056 TCGA-16-1460 TCGA-19-0960 
       16.50        17.79         3.78        14.01         6.41         8.61 
TCGA-19-2625 TCGA-19-5956 TCGA-27-2521 TCGA-28-1756 TCGA-32-1973 TCGA-32-2634 
        4.08        22.49        16.77         2.83        21.07        22.78 
TCGA-32-4208 TCGA-41-4097 TCGA-76-6193 TCGA-CS-4938 TCGA-CS-4943 TCGA-CS-4944 
       21.14         0.20         2.70       117.50        36.36        60.10 
TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
        0.26        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       44.52        36.56        78.28        18.84        30.21        39.78 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q 
       33.57        72.95        31.63        24.20        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US 
       46.06        24.59        27.81        17.19        54.25        23.21 
TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 
       13.71        18.02        14.56        17.46        13.38         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-6542 
       75.16        46.06        65.75        87.45       114.08         2.40 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7018 TCGA-DU-7019 
       62.96       156.23       154.36        14.99        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
       10.36        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 
       23.31        41.98         2.76        21.40        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       33.27        31.69        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC 
       22.29        21.30        17.98       139.04        51.52        37.38 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
       44.42        38.89        50.14        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
      134.27        78.21        95.57        29.13        93.21         3.65 
TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       12.43        75.02        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
      146.14        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
        0.20        25.48        52.21        36.82        14.93        42.54 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8186 
       17.88        22.55        20.61        28.34        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY 
       14.96        22.52        32.61        38.27        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       36.66        48.69        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.13         0.03         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74         0.10        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 
        0.13         3.68         5.33        35.47        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 
        1.64         9.40         0.10        37.87        33.01         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 
        0.10         0.46         2.50         5.56         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5RB TCGA-HT-A614 
       34.19        28.27        26.04        20.22         0.10         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74L TCGA-HT-A74O 
       16.93         1.81        16.83        17.52        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL 
       39.75        40.01        42.54        24.92        31.63        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       20.71        19.00        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W 
        2.37         5.88         7.96         7.59         1.28        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW 
        2.53        12.62        15.85        14.04        14.83        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46         9.90        28.08         2.07        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 
       87.12        18.77        41.10        40.93        36.82        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS 
       31.10        26.47        18.61        18.64        14.07         7.92 
TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       23.51         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       28.37        27.16       169.84        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF 
       31.59        18.71        20.48        48.33        49.32        65.39 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        28.08        24.16        40.83 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ 
       19.69        40.41        44.09        33.73        31.20        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K 
       23.47        37.05        16.01        23.21        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 TCGA-02-0026 TCGA-02-0028 
       35.41        20.71        82.59        53.10        24.59        90.58 
TCGA-02-0039 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 TCGA-02-0080 TCGA-02-0084 
       10.52        14.73         8.35         6.02        89.72        12.62 
TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 
       65.00        99.98        16.54        10.59        12.39        47.11 
TCGA-02-2483 TCGA-06-0129 TCGA-06-0146 TCGA-06-0160 TCGA-06-0165 TCGA-06-0178 
       15.32        33.67        20.09        11.80        10.65        88.14 
TCGA-06-0221 TCGA-06-0410 TCGA-06-1805 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 
       19.82         4.70        33.90         5.98         0.43        31.50 
TCGA-06-6389 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0512 TCGA-08-0516 
        7.79       115.86        29.23        65.33        42.15        19.59 
TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0818 TCGA-12-0827 TCGA-15-1444 
       58.68         4.80         7.27        91.76        38.76        50.53 
TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
       53.19        26.07        16.37        31.33        14.86         5.49 
TCGA-28-5216 
       13.64 

  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                        12.85                         23.21 
[1] "0.1 - 211.2 (12.8)" "0.0 - 182.3 (23.2)"
[1] "hr=" "5.3"
D10V2, continuous
D10V3, binary
                               cls
clus                              0   1
  AMP PEAK 10(7P11.2) MUTATED   503 127
  AMP PEAK 10(7P11.2) WILD-TYPE  70 385
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) MUTATED    503  127
  AMP PEAK 10(7P11.2) WILD-TYPE   70  385
                        clus
vv                       AMP PEAK 10(7P11.2) MUTATED
  BRAIN                                          503
  CENTRAL NERVOUS SYSTEM                         127
                        clus
vv                       AMP PEAK 10(7P11.2) WILD-TYPE
  BRAIN                                             70
  CENTRAL NERVOUS SYSTEM                           385
[1] 2 2
[1] FALSE
D10V4, binary
                               cls
clus                              0   1
  AMP PEAK 10(7P11.2) MUTATED   255 375
  AMP PEAK 10(7P11.2) WILD-TYPE 198 257
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) MUTATED    255  375
  AMP PEAK 10(7P11.2) WILD-TYPE  198  257
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  FEMALE                         255                           198
  MALE                           375                           257
[1] 2 2
[1] FALSE
D10V5, binary
                               cls
clus                              0   1
  AMP PEAK 10(7P11.2) MUTATED    98 499
  AMP PEAK 10(7P11.2) WILD-TYPE 160 271
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) MUTATED     98  499
  AMP PEAK 10(7P11.2) WILD-TYPE  160  271
     clus
vv    AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  NO                           98                           160
  YES                         499                           271
[1] 2 2
[1] FALSE
D10V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 10(7P11.2) MUTATED            57                            25
  AMP PEAK 10(7P11.2) WILD-TYPE         137                             5
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 10(7P11.2) MUTATED                 33                37
  AMP PEAK 10(7P11.2) WILD-TYPE               96               152
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 10(7P11.2) MUTATED                    13
  AMP PEAK 10(7P11.2) WILD-TYPE                   5
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 10(7P11.2) MUTATED                               465
  AMP PEAK 10(7P11.2) WILD-TYPE                              60
D10V7, multiclass
                                 clus
vv                                AMP PEAK 10(7P11.2) MUTATED
  ASTROCYTOMA                                              57
  GLIOBLASTOMA MULTIFORME (GBM)                            25
  OLIGOASTROCYTOMA                                         33
  OLIGODENDROGLIOMA                                        37
  TREATED PRIMARY GBM                                      13
  UNTREATED PRIMARY (DE NOVO) GBM                         465
                                 clus
vv                                AMP PEAK 10(7P11.2) WILD-TYPE
  ASTROCYTOMA                                               137
  GLIOBLASTOMA MULTIFORME (GBM)                               5
  OLIGOASTROCYTOMA                                           96
  OLIGODENDROGLIOMA                                         152
  TREATED PRIMARY GBM                                         5
  UNTREATED PRIMARY (DE NOVO) GBM                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 10(7P11.2) MUTATED                                  1    12
  AMP PEAK 10(7P11.2) WILD-TYPE                                0     9
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 10(7P11.2) MUTATED                          54   541
  AMP PEAK 10(7P11.2) WILD-TYPE                        17   418
D10V8, multiclass
                                  clus
vv                                 AMP PEAK 10(7P11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     12
  BLACK OR AFRICAN AMERICAN                                 54
  WHITE                                                    541
                                  clus
vv                                 AMP PEAK 10(7P11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        9
  BLACK OR AFRICAN AMERICAN                                   17
  WHITE                                                      418
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V9, binary
                               cls
clus                              0   1
  AMP PEAK 10(7P11.2) MUTATED    16 528
  AMP PEAK 10(7P11.2) WILD-TYPE  28 393
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) MUTATED     16  528
  AMP PEAK 10(7P11.2) WILD-TYPE   28  393
                        clus
vv                       AMP PEAK 10(7P11.2) MUTATED
  HISPANIC OR LATINO                              16
  NOT HISPANIC OR LATINO                         528
                        clus
vv                       AMP PEAK 10(7P11.2) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           393
[1] 2 2
[1] FALSE

Clustering(11) Variable = AMP PEAK 11(7Q11.21) MUTATION ANALYSIS
D11V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 11(7Q11.21) MUTATED   140 434
  AMP PEAK 11(7Q11.21) WILD-TYPE 340 164
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                           574                            504 
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                           434                            164 
$`AMP PEAK 11(7Q11.21) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-E1-A7YN TCGA-HT-A619 TCGA-06-1806 
        3.98        51.55        46.88        23.90        21.40        15.32 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        2.73         3.75         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S1 
       12.85         4.77         1.55         4.77         1.87         2.56 
TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.60        15.35        21.73        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       12.69        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 
        0.95         6.21        23.05        13.78         3.25        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 
       23.11         7.10         1.15        30.18         0.92         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 
        7.17        17.49         7.96         3.42        17.59        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1062 TCGA-16-1063 TCGA-19-0960 TCGA-19-0963 
        4.57        10.29        21.24        13.97         8.61        14.27 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 
       25.38         3.65         7.17        12.66         0.13         9.67 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
       17.19        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       16.80        14.96        17.79        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        9.73         7.13         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       11.51        24.76        18.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        8.48         1.22         1.55         0.13         0.66         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        4.77        15.39         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 
       20.78        15.95         8.84        25.18         3.72        12.59 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
        4.44        11.84        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        7.50         4.80         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       36.85        16.70         3.29        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 
        5.92         6.28        20.55         7.69        43.89        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5270 TCGA-DB-A4X9 
       53.62         6.38        17.69        26.76       122.73        46.42 
TCGA-DB-A4XE TCGA-DB-A64O TCGA-DH-A669 TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UV 
       37.45        25.48        30.21        17.19        17.46        18.61 
TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 
        8.45       211.17        49.02         1.22         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 
      133.74        19.89        16.83        94.52         7.96        11.47 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7292 TCGA-DU-8161 
      105.21         6.54         8.84       117.40         7.96        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR TCGA-DU-A5TT 
       14.60        20.68        19.13        16.96        29.85        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7TA 
       26.17        24.99        33.96        11.41        26.76        84.33 
TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YL 
        7.50         0.56        41.13       130.78        14.30        16.18 
TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7Z2 TCGA-FG-5962 TCGA-FG-6688 TCGA-FG-6691 
       21.30        51.88        13.08        47.77        18.77        41.33 
TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z 
       15.35        20.09        13.68        10.72        18.38        10.78 
TCGA-FG-A87Q TCGA-HT-7473 TCGA-HT-7688 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 
        5.72        16.54        31.69         0.49         3.72        16.24 
TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 
       63.55        12.23        13.78        15.72         0.23         0.13 
TCGA-HT-A5R9 TCGA-HT-A5RC TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H 
        0.07         5.33         1.81        16.14        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-KT-A7W1 TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A72U 
       10.52        15.35        14.40         2.30         9.44         0.23 
TCGA-P5-A736 TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
        7.56        19.33        14.53         1.91        16.50        16.70 
TCGA-RY-A845 TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A7IQ TCGA-S9-A7IX 
       19.59        35.38        24.39        19.86        36.13        26.93 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A7CA TCGA-TM-A84B 
       19.99        20.02        10.39        54.77        34.78        24.92 
TCGA-TM-A84H TCGA-TM-A84M TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RP TCGA-VW-A8FI 
       30.44        24.79        15.98         2.04        30.05         8.05 
TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 
       20.81         7.63        11.77         4.73        18.35        23.18 
TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       10.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0046 
       12.16         2.83        14.14         3.62        10.72         6.87 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
        9.57        19.73        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       27.25        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 
       27.02        11.67        17.65        23.18        92.65        15.65 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       48.95        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       10.55        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
       47.61         6.94        22.72        12.95        25.35        14.30 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 
       24.23        11.90         0.20        10.29        11.74         2.33 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0166 
       10.45         3.19        10.82         9.44        56.91         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
       91.00         4.18        20.25         3.65        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
        0.53        15.02        24.16        13.64        13.32        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       20.78        26.76        23.93         6.84         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       11.84        15.32        13.61         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2567 TCGA-06-6390 
       17.65        12.56        30.64         5.95         4.37         5.39 
TCGA-06-6694 TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        7.36        22.68         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        9.80         1.28        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0518 TCGA-08-0520 
       13.97         0.72        12.56         4.27        19.33        10.75 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        18.41         7.56        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0820 
       43.23         7.63         9.73        14.93        14.86        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        27.78         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82         7.59        33.21        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
        9.11        14.53         3.98         4.14         2.24        11.24 
TCGA-14-0813 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        1.35         2.04        28.93        19.30         0.79        13.78 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       19.10        13.28         3.91        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-5139 
       10.75         9.07         5.95        12.95         4.64         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       17.88        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 
       22.68        12.76         5.42         7.36        11.38         5.42 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        3.75         1.61        17.72        26.30 

$`AMP PEAK 11(7Q11.21) WILD-TYPE`
TCGA-06-6391 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O 
        1.48        46.72        31.82        42.05        62.01        17.16 
TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 
       20.09        17.82        20.45        18.64        45.60        42.77 
TCGA-R8-A73M TCGA-06-5408 TCGA-06-5416 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 
       59.38        11.74         6.71         4.96        26.79         3.12 
TCGA-06-A7TL TCGA-12-3652 TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 TCGA-14-1456 
       17.72        34.92        11.97         2.89        16.50        40.96 
TCGA-14-1821 TCGA-14-3477 TCGA-16-1056 TCGA-16-1060 TCGA-16-1460 TCGA-19-0964 
       17.79         3.78        14.01         9.14         6.41         3.39 
TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 TCGA-19-5951 TCGA-19-5956 
        3.25         4.87         1.08         4.08         8.02        22.49 
TCGA-26-1799 TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 TCGA-28-1756 
        9.37        30.05        14.04        16.77        16.08         2.83 
TCGA-32-1973 TCGA-32-2495 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 
       21.07        15.02        22.78        21.14        19.86        10.85 
TCGA-41-4097 TCGA-76-4926 TCGA-76-6193 TCGA-CS-4938 TCGA-CS-4943 TCGA-CS-4944 
        0.20         4.54         2.70       117.50        36.36        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       40.18         0.26        37.38        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
       49.12        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB 
       91.13        44.52        36.56        78.28        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P 
       39.78        33.57        72.95        31.63        24.20        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F 
       19.96        63.88        46.06        24.59        27.81        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       54.25        23.21        13.71        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       15.16        52.11        22.42        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
       87.45       114.08         2.40        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 
       14.99        90.77        30.67        26.30        10.36        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       18.94        44.02        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
        2.76         5.10        21.40        15.48        14.17        33.27 
TCGA-DU-A5TS TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       31.69        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG 
       21.30        17.98       139.04        51.52        37.38        44.42 
TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       38.89        50.14        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       78.21        95.57        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       12.43        75.02        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
      146.14        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
        0.20        25.48        52.21        36.82        14.93        42.54 
TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8185 
       18.44        17.88        22.55        20.61        28.34        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX 
       16.01        14.96        22.52        32.61        38.27        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       23.70        14.76        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       28.54        36.66        48.69        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 
       11.54        40.11         0.13         0.03         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 
        0.76        44.68         6.05        42.74         0.10        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 
       39.48        19.23        39.09         0.23        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 
       11.28        31.43         1.64         9.40         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R7 
        0.23        29.59        34.19        28.27        26.04        20.22 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B 
       27.35         0.10         2.70        16.93        16.83        17.52 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       31.63        12.76        28.87        20.71        19.00        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F1 TCGA-P5-A5F2 
        0.23         6.71         7.99         2.37         5.88         7.96 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        7.59         1.28        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
        9.01        13.61         9.60        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.04        14.83        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-QH-A870 
       10.29        14.53        16.34        16.73        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       41.10        40.93        36.82        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
      135.22        85.55        38.56        84.99        31.10        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 
       18.61        18.64        14.07         7.92        23.51         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
      169.84        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       20.48        48.33        49.32        65.39        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84Q 
       40.64        28.08        24.16        40.83        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RJ 
       18.61        14.93        23.80        21.37        19.69        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        36.69        33.73        31.20        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        45.93        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       37.05        16.01        23.21        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-02-0010 
       39.88        43.40        45.80        46.88        37.71        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 TCGA-02-0026 TCGA-02-0028 TCGA-02-0039 
       20.71        82.59        53.10        24.59        90.58        10.52 
TCGA-02-0043 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 
       18.31        14.73         8.35         6.02        26.43        28.70 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 
       89.72        22.72        12.62        65.00        99.98        16.54 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-2483 TCGA-06-0127 
       10.59        12.39        14.50        47.11        15.32         3.98 
TCGA-06-0129 TCGA-06-0137 TCGA-06-0142 TCGA-06-0146 TCGA-06-0154 TCGA-06-0160 
       33.67        26.70         2.20        20.09        13.94        11.80 
TCGA-06-0162 TCGA-06-0165 TCGA-06-0178 TCGA-06-0187 TCGA-06-0219 TCGA-06-0221 
        3.42        10.65        88.14        27.22         0.72        19.82 
TCGA-06-0240 TCGA-06-0410 TCGA-06-0747 TCGA-06-1805 TCGA-06-2565 TCGA-06-2566 
       20.42         4.70         2.70        33.90        16.64         5.98 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6693 TCGA-08-0245 TCGA-08-0246 
        0.43        31.50         7.79       120.56        37.84         4.18 
TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0512 TCGA-08-0514 
      115.86        29.23        65.33         8.42        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0688 TCGA-12-0818 
       19.59        58.68         4.80         7.27        26.66        91.76 
TCGA-12-0819 TCGA-12-0827 TCGA-14-0817 TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 
       24.79        38.76         5.39        50.53        53.19        26.07 
TCGA-16-0850 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-28-5209 TCGA-28-5216 
       16.37        31.33        14.86         5.49        14.53        13.64 

  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                        211.17                         182.33 
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                        12.675                         22.275 
[1] "0.1 - 211.2 (12.7)" "0.0 - 182.3 (22.3)"
[1] "hr=" "4.2"
D11V2, continuous
D11V3, binary
                                cls
clus                               0   1
  AMP PEAK 11(7Q11.21) MUTATED   461 116
  AMP PEAK 11(7Q11.21) WILD-TYPE 112 396
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(7Q11.21) MUTATED    461  116
  AMP PEAK 11(7Q11.21) WILD-TYPE  112  396
                        clus
vv                       AMP PEAK 11(7Q11.21) MUTATED
  BRAIN                                           461
  CENTRAL NERVOUS SYSTEM                          116
                        clus
vv                       AMP PEAK 11(7Q11.21) WILD-TYPE
  BRAIN                                             112
  CENTRAL NERVOUS SYSTEM                            396
[1] 2 2
[1] FALSE
D11V4, binary
                                cls
clus                               0   1
  AMP PEAK 11(7Q11.21) MUTATED   233 344
  AMP PEAK 11(7Q11.21) WILD-TYPE 220 288
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(7Q11.21) MUTATED    233  344
  AMP PEAK 11(7Q11.21) WILD-TYPE  220  288
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  FEMALE                          233                            220
  MALE                            344                            288
[1] 2 2
[1] FALSE
D11V5, binary
                                cls
clus                               0   1
  AMP PEAK 11(7Q11.21) MUTATED    91 454
  AMP PEAK 11(7Q11.21) WILD-TYPE 167 316
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(7Q11.21) MUTATED     91  454
  AMP PEAK 11(7Q11.21) WILD-TYPE  167  316
     clus
vv    AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  NO                            91                            167
  YES                          454                            316
[1] 2 2
[1] FALSE
D11V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 11(7Q11.21) MUTATED            50                            22
  AMP PEAK 11(7Q11.21) WILD-TYPE         144                             8
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 11(7Q11.21) MUTATED                 31                35
  AMP PEAK 11(7Q11.21) WILD-TYPE               98               154
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 11(7Q11.21) MUTATED                    10
  AMP PEAK 11(7Q11.21) WILD-TYPE                   8
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 11(7Q11.21) MUTATED                               429
  AMP PEAK 11(7Q11.21) WILD-TYPE                              96
D11V7, multiclass
                                 clus
vv                                AMP PEAK 11(7Q11.21) MUTATED
  ASTROCYTOMA                                               50
  GLIOBLASTOMA MULTIFORME (GBM)                             22
  OLIGOASTROCYTOMA                                          31
  OLIGODENDROGLIOMA                                         35
  TREATED PRIMARY GBM                                       10
  UNTREATED PRIMARY (DE NOVO) GBM                          429
                                 clus
vv                                AMP PEAK 11(7Q11.21) WILD-TYPE
  ASTROCYTOMA                                                144
  GLIOBLASTOMA MULTIFORME (GBM)                                8
  OLIGOASTROCYTOMA                                            98
  OLIGODENDROGLIOMA                                          154
  TREATED PRIMARY GBM                                          8
  UNTREATED PRIMARY (DE NOVO) GBM                             96
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 11(7Q11.21) MUTATED                                  1    10
  AMP PEAK 11(7Q11.21) WILD-TYPE                                0    11
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 11(7Q11.21) MUTATED                          51   493
  AMP PEAK 11(7Q11.21) WILD-TYPE                        20   466
D11V8, multiclass
                                  clus
vv                                 AMP PEAK 11(7Q11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  51
  WHITE                                                     493
                                  clus
vv                                 AMP PEAK 11(7Q11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        11
  BLACK OR AFRICAN AMERICAN                                    20
  WHITE                                                       466
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V9, binary
                                cls
clus                               0   1
  AMP PEAK 11(7Q11.21) MUTATED    14 484
  AMP PEAK 11(7Q11.21) WILD-TYPE  30 437
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(7Q11.21) MUTATED     14  484
  AMP PEAK 11(7Q11.21) WILD-TYPE   30  437
                        clus
vv                       AMP PEAK 11(7Q11.21) MUTATED
  HISPANIC OR LATINO                               14
  NOT HISPANIC OR LATINO                          484
                        clus
vv                       AMP PEAK 11(7Q11.21) WILD-TYPE
  HISPANIC OR LATINO                                 30
  NOT HISPANIC OR LATINO                            437
[1] 2 2
[1] FALSE

Clustering(12) Variable = AMP PEAK 12(7Q21.2) MUTATION ANALYSIS
D12V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 12(7Q21.2) MUTATED   169 459
  AMP PEAK 12(7Q21.2) WILD-TYPE 311 139
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          628                           450 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          459                           139 
$`AMP PEAK 12(7Q21.2) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-E1-A7YN TCGA-HT-A619 TCGA-06-1806 
        3.98        51.55        46.88        23.90        21.40        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U1 
        8.32        12.85         4.77         1.55         4.77         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 
        3.12         2.56        14.60        15.35        21.73        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       25.68        14.73        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        12.69        14.53        14.93         3.22         2.04 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 
        0.95         6.21        23.05        13.78         3.25        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 
       23.11         1.15        30.18         0.92         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
       17.49         7.96         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0963 TCGA-19-1390 
       10.29        21.24        13.97         6.41        14.27        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
       17.19        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       16.80        14.96        17.79        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        14.04        11.51        24.76        18.08        16.77 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
       16.08         7.59         2.86         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        8.35         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1978 
        0.66         6.74         4.77        15.39         0.49        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 
       12.23        20.78        15.02        15.95         8.84        25.18 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
        3.72        12.59        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44        11.84        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        36.85        16.70         3.29 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
      117.50         7.69        43.89        21.01        53.62         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5270 TCGA-DB-A4X9 TCGA-DB-A4XE TCGA-DB-A64O 
       17.69        26.76       122.73        46.42        37.45        25.48 
TCGA-DB-A64X TCGA-DH-A669 TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5849 
       18.51        30.21        17.19        17.46        18.61        14.56 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6399 
        8.45         6.81        17.49       211.17        49.02        65.75 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        1.22         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
       94.52         7.96        11.47       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7292 TCGA-DU-7301 
      105.21         6.54         8.84       117.40         7.96        25.91 
TCGA-DU-7306 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TR 
       41.98        23.74        20.68        19.13        16.96        29.85 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S6 TCGA-DU-A76K 
       24.43        26.17        24.99        33.96        95.11        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TD TCGA-DU-A7TJ 
       26.76        21.30       139.04        84.33         7.50         0.56 
TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YL TCGA-E1-A7YM 
       50.14        41.13       130.78        14.30        16.18        21.30 
TCGA-E1-A7YQ TCGA-E1-A7Z3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5965 TCGA-FG-6688 
       51.88        73.48         0.20        47.77        36.82        18.77 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 
       42.54        41.33        18.44        15.35        20.09        13.68 
TCGA-FG-8186 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7473 
       16.01        10.72        18.38        10.78         5.72        16.54 
TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7693 
       17.42        24.26       122.47        56.09        31.69        17.52 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 
        0.49         3.72        11.28        16.24        63.55        12.23 
TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R7 
        2.50        13.78        15.72         0.23         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C 
        0.07        27.35         5.33         1.81        16.14        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74O TCGA-HW-7495 TCGA-HW-8322 
        2.43        10.52        15.35         0.10        35.44        24.92 
TCGA-HW-A5KJ TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A72U 
       31.63        14.40         0.23         2.30         9.44         0.23 
TCGA-P5-A736 TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6X9 
        7.56        19.33        14.83        14.53        12.23         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-RY-A845 TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6WM 
       16.50        16.70        19.59        35.38        24.39        19.86 
TCGA-S9-A6WO TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX 
       18.61        36.13        26.93        20.02        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A84B 
       28.37        10.39        54.77        48.33        34.78        24.92 
TCGA-TM-A84H TCGA-TM-A84M TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RP TCGA-VW-A8FI 
       30.44        24.79        15.98         2.04        30.05         8.05 
TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 
       20.81         7.63        11.77         4.73        18.35        10.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 
       20.61        87.06        77.65        20.12        42.74        12.16 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
        2.83        14.14         3.62        10.72        18.31         6.87 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
        9.57        19.73        25.05         5.49        10.19        20.84 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        27.02        11.67        17.65        23.18        92.65 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       25.12        14.50        10.55        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.45        20.32         2.70 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 
       20.38        47.61         6.94        22.72        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
       11.74         2.33        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        9.44         3.42        56.91         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       20.25         3.65        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       15.02        24.16        19.82        13.64        13.32        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 
       26.79        11.84        15.32        13.61         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2567 
        4.93        17.65        12.56        30.64         5.95         4.37 
TCGA-06-6390 TCGA-06-6694 TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        5.39         7.36        22.68         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       12.16         9.80         1.28        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       37.58        22.29         3.39        12.23        14.93        18.02 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       15.35        13.97         0.72        12.56         4.27        11.08 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
       19.33        10.75        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
        7.59        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 
        3.98         4.14         2.24        11.24         1.35         5.39 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
        2.04        28.93        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       19.10        13.28         3.91        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 
       10.75         9.07         5.95        12.95         4.64        31.33 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        1.58         7.92         2.33         7.30        14.93        11.28 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       14.53        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 
       22.68        12.76         5.42         7.36        11.38         5.42 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        3.75         1.61        17.72        26.30 

$`AMP PEAK 12(7Q21.2) WILD-TYPE`
TCGA-06-6391 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O 
        1.48        46.72        31.82        42.05        62.01        17.16 
TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 
       20.09        17.82        20.45        18.64        45.60        42.77 
TCGA-R8-A73M TCGA-06-5416 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TL TCGA-12-1602 
       59.38         6.71         4.96        26.79        17.72         6.77 
TCGA-12-3652 TCGA-14-0736 TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 TCGA-14-1452 
       34.92        15.12        11.97         2.89        16.50         7.10 
TCGA-14-1456 TCGA-14-1821 TCGA-14-3477 TCGA-16-1056 TCGA-16-1060 TCGA-19-0960 
       40.96        17.79         3.78        14.01         9.14         8.61 
TCGA-19-0964 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 TCGA-19-5951 TCGA-19-5956 
        3.39         4.87         1.08         4.08         8.02        22.49 
TCGA-27-1836 TCGA-27-2527 TCGA-27-2528 TCGA-28-1756 TCGA-32-1973 TCGA-32-1977 
       30.05        14.40        15.78         2.83        21.07         0.10 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-41-4097 TCGA-76-6193 
       22.78        21.14        19.86        10.85         0.20         2.70 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 
       36.36        60.10        40.18         0.26        37.38        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       48.30        49.94        49.12        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       18.84        30.21        39.78        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       24.20        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       29.23        14.40        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D 
       16.18        19.96        63.88        46.06        24.59        27.81 
TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5851 
       17.19        54.25        23.21        13.71        18.02        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6393 
        6.74        13.38       182.33        18.94        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-6542 
       22.42        75.16        46.06        87.45       114.08         2.40 
TCGA-DU-7007 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 
       62.96        90.77        30.67        26.30        10.36        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 
       18.94        44.02        60.30        23.31         2.76         5.10 
TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS 
       14.60        21.40        15.48        14.17        33.27        31.69 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7TB 
       25.55        21.57        20.98        22.29        17.98        51.52 
TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
       37.38        44.42        38.89        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
      134.27        78.21        95.57        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       19.46        12.43        75.02        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
       36.82       146.14        13.08       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 
        0.23        25.48        52.21        14.93        17.88        22.55 
TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       20.61        28.34        14.24        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       38.27        18.71        23.70        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FN-7833 
       16.44        22.26        28.54        36.66        48.69        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        3.75         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 
        4.57        17.29         3.16        22.06        45.99        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74         0.10        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
        2.96         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 
        3.68         5.33        35.47        31.43         1.64         9.40 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
        0.10        37.87        33.01         6.25         0.10         0.46 
TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
        5.56         0.23        29.59        34.19        28.27        26.04 
TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74L 
        0.10         2.70        16.93        16.83        17.52        11.05 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8319 
       56.58        45.44        41.49        68.32        69.27        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       40.01        42.54        12.76        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F1 TCGA-P5-A5F2 
       14.40         6.71         7.99         2.37         5.88         7.96 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        7.59         1.28        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
        9.01        13.61         9.60        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       14.04        13.61        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.34        16.73        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       32.65        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        40.93 
TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       36.82        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ 
       38.56        84.99        31.10        26.47        18.64        14.07 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
        7.92        23.51        19.99         8.19         2.04        20.68 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       27.16       169.84        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       18.71        20.48        49.32        65.39        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84Q 
       40.64        28.08        24.16        40.83        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RJ 
       18.61        14.93        23.80        21.37        19.69        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        36.69        33.73        31.20        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        45.93        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       37.05        16.01        23.21        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-02-0007 
       39.88        43.40        45.80        46.88        37.71        23.18 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 TCGA-02-0026 TCGA-02-0028 
       35.41        20.71        82.59        53.10        24.59        90.58 
TCGA-02-0039 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 
       10.52        14.73         8.35         6.02        26.43        28.70 
TCGA-02-0079 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 TCGA-02-0333 TCGA-02-0338 
       27.25        12.62        65.00        99.98         4.37        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-2483 TCGA-06-0122 TCGA-06-0127 TCGA-06-0129 
       12.39        47.11        15.32         6.15         3.98        33.67 
TCGA-06-0142 TCGA-06-0146 TCGA-06-0160 TCGA-06-0165 TCGA-06-0178 TCGA-06-0219 
        2.20        20.09        11.80        10.65        88.14         0.72 
TCGA-06-0240 TCGA-06-0410 TCGA-06-1805 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 
       20.42         4.70        33.90        16.64         5.98         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6693 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
       31.50         7.79       120.56        37.84         4.18       115.86 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
       29.23        65.33         8.42        42.15        19.59        58.68 
TCGA-08-0521 TCGA-08-0524 TCGA-12-0827 TCGA-12-1091 TCGA-15-1447 TCGA-16-0849 
        4.80         7.27        38.76        33.21        53.19        26.07 
TCGA-16-0850 TCGA-26-5133 TCGA-26-5134 TCGA-28-2514 TCGA-28-5208 TCGA-28-5216 
       16.37        14.86         5.49         5.26        17.88        13.64 

  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                       13.780                        22.275 
[1] "0.1 - 211.2 (13.8)" "0.0 - 182.3 (22.3)"
[1] "hr=" "3.7"
D12V2, continuous
D12V3, binary
                               cls
clus                              0   1
  AMP PEAK 12(7Q21.2) MUTATED   476 155
  AMP PEAK 12(7Q21.2) WILD-TYPE  97 357
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7Q21.2) MUTATED    476  155
  AMP PEAK 12(7Q21.2) WILD-TYPE   97  357
                        clus
vv                       AMP PEAK 12(7Q21.2) MUTATED
  BRAIN                                          476
  CENTRAL NERVOUS SYSTEM                         155
                        clus
vv                       AMP PEAK 12(7Q21.2) WILD-TYPE
  BRAIN                                             97
  CENTRAL NERVOUS SYSTEM                           357
[1] 2 2
[1] FALSE
D12V4, binary
                               cls
clus                              0   1
  AMP PEAK 12(7Q21.2) MUTATED   261 370
  AMP PEAK 12(7Q21.2) WILD-TYPE 192 262
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7Q21.2) MUTATED    261  370
  AMP PEAK 12(7Q21.2) WILD-TYPE  192  262
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  FEMALE                         261                           192
  MALE                           370                           262
[1] 2 2
[1] FALSE
D12V5, binary
                               cls
clus                              0   1
  AMP PEAK 12(7Q21.2) MUTATED   103 495
  AMP PEAK 12(7Q21.2) WILD-TYPE 155 275
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7Q21.2) MUTATED    103  495
  AMP PEAK 12(7Q21.2) WILD-TYPE  155  275
     clus
vv    AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  NO                          103                           155
  YES                         495                           275
[1] 2 2
[1] FALSE
D12V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 12(7Q21.2) MUTATED            67                            24
  AMP PEAK 12(7Q21.2) WILD-TYPE         127                             6
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 12(7Q21.2) MUTATED                 40                48
  AMP PEAK 12(7Q21.2) WILD-TYPE               89               141
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 12(7Q21.2) MUTATED                    12
  AMP PEAK 12(7Q21.2) WILD-TYPE                   6
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 12(7Q21.2) MUTATED                               440
  AMP PEAK 12(7Q21.2) WILD-TYPE                              85
D12V7, multiclass
                                 clus
vv                                AMP PEAK 12(7Q21.2) MUTATED
  ASTROCYTOMA                                              67
  GLIOBLASTOMA MULTIFORME (GBM)                            24
  OLIGOASTROCYTOMA                                         40
  OLIGODENDROGLIOMA                                        48
  TREATED PRIMARY GBM                                      12
  UNTREATED PRIMARY (DE NOVO) GBM                         440
                                 clus
vv                                AMP PEAK 12(7Q21.2) WILD-TYPE
  ASTROCYTOMA                                               127
  GLIOBLASTOMA MULTIFORME (GBM)                               6
  OLIGOASTROCYTOMA                                           89
  OLIGODENDROGLIOMA                                         141
  TREATED PRIMARY GBM                                         6
  UNTREATED PRIMARY (DE NOVO) GBM                            85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 12(7Q21.2) MUTATED                                  1    10
  AMP PEAK 12(7Q21.2) WILD-TYPE                                0    11
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 12(7Q21.2) MUTATED                          55   543
  AMP PEAK 12(7Q21.2) WILD-TYPE                        16   416
D12V8, multiclass
                                  clus
vv                                 AMP PEAK 12(7Q21.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     10
  BLACK OR AFRICAN AMERICAN                                 55
  WHITE                                                    543
                                  clus
vv                                 AMP PEAK 12(7Q21.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       11
  BLACK OR AFRICAN AMERICAN                                   16
  WHITE                                                      416
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V9, binary
                               cls
clus                              0   1
  AMP PEAK 12(7Q21.2) MUTATED    15 536
  AMP PEAK 12(7Q21.2) WILD-TYPE  29 385
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7Q21.2) MUTATED     15  536
  AMP PEAK 12(7Q21.2) WILD-TYPE   29  385
                        clus
vv                       AMP PEAK 12(7Q21.2) MUTATED
  HISPANIC OR LATINO                              15
  NOT HISPANIC OR LATINO                         536
                        clus
vv                       AMP PEAK 12(7Q21.2) WILD-TYPE
  HISPANIC OR LATINO                                29
  NOT HISPANIC OR LATINO                           385
[1] 2 2
[1] FALSE

Clustering(13) Variable = AMP PEAK 13(7Q31.2) MUTATION ANALYSIS
D13V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 13(7Q31.2) MUTATED   185 453
  AMP PEAK 13(7Q31.2) WILD-TYPE 295 145
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          638                           440 
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          453                           145 
$`AMP PEAK 13(7Q31.2) MUTATED`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DU-A76O TCGA-E1-A7YN 
        1.48         3.98        51.55        46.88        17.16        23.90 
TCGA-HT-A619 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
       21.40        15.32        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.81         8.98         8.55         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        4.57         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-1092 
        4.77         1.87         3.12         2.56        14.60        21.73 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       15.65        25.68        14.73        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
        2.04         0.95         6.21        23.05        13.78         3.25 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 
       26.33        15.95         1.38         1.12         3.75        58.78 
TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
       17.49         7.96         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0963 TCGA-19-1390 
       10.29        21.24        13.97         6.41        14.27        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2623 TCGA-19-2624 
        3.65         7.17        12.66         0.13         7.53         0.16 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 
       24.23         7.00         7.04         6.64        17.19        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
       17.79        28.54        10.03        13.87         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1837 
       16.60         9.86        24.23        40.54        21.30        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        16.77        16.08         7.59 
TCGA-27-2526 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
        2.86         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        8.48         1.22         1.55         0.13         0.66         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
        4.77        15.39         0.49        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 
       15.02         8.84        25.18         3.72        12.59        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
       11.84        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       36.85        16.70         3.29        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5270 
       21.01        53.62         6.38        17.69        26.76       122.73 
TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A64O TCGA-DB-A64X 
       46.42        30.21        39.78        37.45        25.48        18.51 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UV 
       24.59        30.21        27.81        17.19        17.46        18.61 
TCGA-DU-5849 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 
       14.56         8.45         6.81        17.49       211.17        49.02 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       65.75         1.22         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 
       16.83        94.52         7.96        11.47       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7292 
       14.99       105.21         6.54         8.84       117.40         7.96 
TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
       25.91        41.98        23.74        20.68        19.13        16.96 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S6 
       29.85        24.43        26.17        24.99        33.96        95.11 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TD 
       11.41        26.76        21.30       139.04        84.33         7.50 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YL 
        0.56        50.14        41.13       130.78        14.30        16.18 
TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7Z3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5965 
       21.30        51.88        73.48         0.20        47.77        36.82 
TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7643 
       18.77        42.54        41.33        18.44        15.35        20.09 
TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A60L TCGA-FG-A70Z 
       13.68        16.01        10.72        18.38        21.53        10.78 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7604 
       48.69         5.72        16.54        17.42        24.26       122.47 
TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7693 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-7884 
       56.09        31.69        17.52         0.49         3.72        11.28 
TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8114 
       16.24        63.55        12.23         2.50        13.78        34.19 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
       15.72         0.23         0.13        20.22         0.07        27.35 
TCGA-HT-A5RC TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
        5.33         1.81        16.14        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ 
       15.35        11.05         0.10        35.44        24.92        31.63 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72U 
       14.40         0.23         2.30         9.44         5.88         0.23 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A736 TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
        9.01        13.61         7.56        19.33        14.83        14.53 
TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 
       12.23        10.29         1.91        16.50        16.70        12.99 
TCGA-RY-A845 TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IQ 
       19.59        35.38        24.39        19.86        18.61        36.13 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7R1 
       26.93        19.99        20.02        15.06        28.37       169.84 
TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H 
       10.39        54.77        48.33        34.78        24.92        30.44 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RM TCGA-TQ-A7RP 
       40.83        24.79        15.98         2.04        36.69        30.05 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       23.21         8.05        20.81         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       18.35        10.59        35.41        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       20.12        53.10        42.74        12.16         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 
        3.62        10.72        18.31         6.87        15.09        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 
        6.54         2.50        19.86         9.57        19.73        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0085 
        5.49        10.19        20.84        27.25        89.72        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
        8.81        57.76        16.96         3.48        27.02        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.18        92.65        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.93        17.72        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 
        7.33        15.91        25.71        25.12        14.50        10.55 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.27        16.21         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       15.45        20.32         2.70        20.38        47.61         6.94 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 
       11.90         0.20        10.29        11.74         2.33        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 
       10.45         3.19         9.44        56.91         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        4.18        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16        19.82        13.64        13.32 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        9.57         3.16        35.11        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2567 TCGA-06-6390 TCGA-06-6694 TCGA-08-0244 TCGA-08-0345 
        5.95         4.37         5.39         7.36        22.68         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 
        8.42        25.71        12.16         9.80         1.28        17.95 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       18.02        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
       19.33        10.75        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       38.17        25.97        26.66         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       27.78         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       28.93        19.30         0.79        13.78        19.10        13.28 
TCGA-16-0846 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
        3.91        11.77        21.90         0.66        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5139 TCGA-26-6173 
        5.95        12.95         4.64        31.33         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 
        2.33         7.30        14.93        11.28        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        5.42         7.36        11.38         5.42         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

$`AMP PEAK 13(7Q31.2) WILD-TYPE`
TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K 
       46.72        31.82        42.05        62.01        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5416 
       20.45        18.64        45.60        42.77        59.38         6.71 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TL TCGA-12-0615 TCGA-12-1602 TCGA-12-3652 
        4.96        26.79        17.72        15.35         6.77        34.92 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 TCGA-14-1402 TCGA-14-1452 
       15.12        11.97         2.89        16.50        32.05         7.10 
TCGA-14-1453 TCGA-14-1821 TCGA-14-3477 TCGA-16-1056 TCGA-16-1060 TCGA-19-0960 
        1.15        17.79         3.78        14.01         9.14         8.61 
TCGA-19-0964 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 
        3.39         3.25         9.67         4.87         1.08         4.08 
TCGA-19-5951 TCGA-19-5956 TCGA-27-1836 TCGA-27-2527 TCGA-27-2528 TCGA-28-1756 
        8.02        22.49        30.05        14.40        15.78         2.83 
TCGA-32-1973 TCGA-32-1977 TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 
       21.07         0.10        15.95        22.78        21.14        19.86 
TCGA-32-4719 TCGA-41-4097 TCGA-76-6193 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
       10.85         0.20         2.70        36.36        60.10        40.18 
TCGA-CS-5394 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
        0.26        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XF TCGA-DB-A4XG 
       44.52        36.56        78.28        18.84        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       31.63        24.20        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       27.81        29.23        14.40        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66F 
       30.74        16.18        19.96        63.88        46.06        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 
       54.25        23.21        13.71        18.02        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       13.38       182.33        18.94        15.16        52.11        22.42 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 
       75.16        46.06        87.45       114.08         2.40        62.96 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 
       90.77        30.67        26.30        10.36        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 
       44.02        60.30        23.31         2.76         5.10        14.60 
TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A6S2 
       21.40        15.48        14.17        33.27        31.69        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC 
       21.57        20.98        22.29        17.98        51.52        37.38 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       44.42        38.89        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       78.21        95.57        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       12.43        75.02        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
      146.14        13.08       145.05        32.35        39.48         0.23 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       25.48        52.21        14.93        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       28.34        14.24        14.96        22.52        32.61        38.27 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       18.71        23.70        14.76        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A710 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       28.54        36.66        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7478 
       40.11         0.13         0.03         3.75         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
        5.03        29.85        23.18         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       22.06        45.99        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 
       14.96         0.10         0.10         2.96         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 
       39.48        19.23        39.09         0.23        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       31.43         1.64         9.40         0.10        37.87        33.01 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 
        6.25         0.10         0.46         5.56         0.23        29.59 
TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 
       28.27        26.04         0.10         2.70        16.93        16.83 
TCGA-HT-A61B TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 
       17.52        56.58        45.44        41.49        68.32        69.27 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       39.75        40.01        42.54        12.76        28.87        20.71 
TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F2 
       19.00        14.40         6.71         7.99         2.37         7.96 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        7.59         1.28        10.42        13.25        11.64        10.95 
TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        9.60        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CW 
       15.16         2.53        12.62        15.85        14.04        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X 
       13.41         9.17        14.53        16.34        16.73        11.08 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       41.10        40.93        36.82        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
      135.22        85.55        38.56        84.99        31.10        26.47 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 
       18.64        14.07         7.92        23.51         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       20.68        18.54        27.16        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84C 
       31.59        18.71        20.48        49.32        65.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84O TCGA-TM-A84Q 
       59.05        40.64        28.08        24.16        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RJ 
       18.61        14.93        23.80        21.37        19.69        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       44.09        33.73        31.20        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       16.01        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-02-0007 TCGA-02-0011 TCGA-02-0014 
       45.80        46.88        37.71        23.18        20.71        82.59 
TCGA-02-0026 TCGA-02-0028 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0058 
       24.59        90.58        10.52        14.73         3.22         8.35 
TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0083 TCGA-02-0084 TCGA-02-0104 
        6.02        26.43        28.70        22.72        12.62        65.00 
TCGA-02-0114 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2483 
       99.98         4.37        10.59        12.39        47.11        15.32 
TCGA-06-0122 TCGA-06-0127 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0158 
        6.15         3.98        33.67         2.20        20.09        10.82 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0178 TCGA-06-0219 TCGA-06-0240 
       11.80         3.42        10.65        88.14         0.72        20.42 
TCGA-06-1805 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
       33.90        16.64         5.98         0.43        31.50         7.79 
TCGA-06-6693 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 
      120.56        37.84         4.18       115.86        29.23        65.33 
TCGA-08-0353 TCGA-08-0355 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        8.42        24.56        42.15        11.08        19.59        58.68 
TCGA-08-0521 TCGA-08-0524 TCGA-12-0691 TCGA-12-0827 TCGA-12-1091 TCGA-15-1444 
        4.80         7.27        12.13        38.76        33.21        50.53 
TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-26-5133 TCGA-26-5134 TCGA-28-2514 
       53.19        26.07        16.37        14.86         5.49         5.26 
TCGA-28-5208 TCGA-28-5220 
       17.88        12.76 

  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                       13.970                        21.255 
[1] "0.1 - 211.2 (14.0)" "0.0 - 182.3 (21.3)"
[1] "hr=" "3.2"
D13V2, continuous
D13V3, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q31.2) MUTATED   468 173
  AMP PEAK 13(7Q31.2) WILD-TYPE 105 339
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q31.2) MUTATED    468  173
  AMP PEAK 13(7Q31.2) WILD-TYPE  105  339
                        clus
vv                       AMP PEAK 13(7Q31.2) MUTATED
  BRAIN                                          468
  CENTRAL NERVOUS SYSTEM                         173
                        clus
vv                       AMP PEAK 13(7Q31.2) WILD-TYPE
  BRAIN                                            105
  CENTRAL NERVOUS SYSTEM                           339
[1] 2 2
[1] FALSE
D13V4, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q31.2) MUTATED   266 375
  AMP PEAK 13(7Q31.2) WILD-TYPE 187 257
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q31.2) MUTATED    266  375
  AMP PEAK 13(7Q31.2) WILD-TYPE  187  257
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  FEMALE                         266                           187
  MALE                           375                           257
[1] 2 2
[1] FALSE
D13V5, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q31.2) MUTATED   110 496
  AMP PEAK 13(7Q31.2) WILD-TYPE 148 274
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q31.2) MUTATED    110  496
  AMP PEAK 13(7Q31.2) WILD-TYPE  148  274
     clus
vv    AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  NO                          110                           148
  YES                         496                           274
[1] 2 2
[1] FALSE
D13V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 13(7Q31.2) MUTATED            74                            23
  AMP PEAK 13(7Q31.2) WILD-TYPE         120                             7
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 13(7Q31.2) MUTATED                 47                52
  AMP PEAK 13(7Q31.2) WILD-TYPE               82               137
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 13(7Q31.2) MUTATED                    13
  AMP PEAK 13(7Q31.2) WILD-TYPE                   5
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 13(7Q31.2) MUTATED                               432
  AMP PEAK 13(7Q31.2) WILD-TYPE                              93
D13V7, multiclass
                                 clus
vv                                AMP PEAK 13(7Q31.2) MUTATED
  ASTROCYTOMA                                              74
  GLIOBLASTOMA MULTIFORME (GBM)                            23
  OLIGOASTROCYTOMA                                         47
  OLIGODENDROGLIOMA                                        52
  TREATED PRIMARY GBM                                      13
  UNTREATED PRIMARY (DE NOVO) GBM                         432
                                 clus
vv                                AMP PEAK 13(7Q31.2) WILD-TYPE
  ASTROCYTOMA                                               120
  GLIOBLASTOMA MULTIFORME (GBM)                               7
  OLIGOASTROCYTOMA                                           82
  OLIGODENDROGLIOMA                                         137
  TREATED PRIMARY GBM                                         5
  UNTREATED PRIMARY (DE NOVO) GBM                            93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 13(7Q31.2) MUTATED                                  1    11
  AMP PEAK 13(7Q31.2) WILD-TYPE                                0    10
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 13(7Q31.2) MUTATED                          54   554
  AMP PEAK 13(7Q31.2) WILD-TYPE                        17   405
D13V8, multiclass
                                  clus
vv                                 AMP PEAK 13(7Q31.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     11
  BLACK OR AFRICAN AMERICAN                                 54
  WHITE                                                    554
                                  clus
vv                                 AMP PEAK 13(7Q31.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       10
  BLACK OR AFRICAN AMERICAN                                   17
  WHITE                                                      405
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V9, binary
                               cls
clus                              0   1
  AMP PEAK 13(7Q31.2) MUTATED    16 547
  AMP PEAK 13(7Q31.2) WILD-TYPE  28 374
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q31.2) MUTATED     16  547
  AMP PEAK 13(7Q31.2) WILD-TYPE   28  374
                        clus
vv                       AMP PEAK 13(7Q31.2) MUTATED
  HISPANIC OR LATINO                              16
  NOT HISPANIC OR LATINO                         547
                        clus
vv                       AMP PEAK 13(7Q31.2) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           374
[1] 2 2
[1] FALSE

Clustering(14) Variable = AMP PEAK 14(7Q32.3) MUTATION ANALYSIS
D14V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 14(7Q32.3) MUTATED   192 459
  AMP PEAK 14(7Q32.3) WILD-TYPE 288 139
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                          651                           427 
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                          459                           139 
$`AMP PEAK 14(7Q32.3) MUTATED`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DU-A76O TCGA-E1-A7YN 
        1.48         3.98        51.55        46.88        17.16        23.90 
TCGA-HT-A619 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
       21.40        15.32        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.81         8.98         8.55         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        4.57         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-1092 
        4.77         1.87         3.12         2.56        14.60        21.73 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       15.65        25.68        14.73        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
        2.04         0.95         6.21        23.05        13.78         3.25 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 
       26.33        15.95         1.38         1.12         3.75        58.78 
TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
       17.49         7.96         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
       10.29        21.24        13.97         6.41         8.61        14.27 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 
       25.38         3.65         7.17        12.66         0.13         9.67 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
       17.19        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       16.80        14.96        17.79        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        14.04        11.51        24.76        18.08        16.77 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
       16.08         7.59         2.86         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        8.35         7.63         8.48         1.22         1.55         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1978 
        0.66         6.74         4.77        15.39         0.49        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 
       12.23        20.78        15.02         8.84        25.18         3.72 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       12.59        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R 
        0.99         4.44        11.84        15.12        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        1.45        25.58         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 
        9.17         2.53        36.85        16.70         3.29        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       18.64        36.20         5.92         6.28        20.55       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
        7.69        43.89        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-DB-5270 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD 
       26.76       122.73        78.28        46.42        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A64O TCGA-DB-A64X TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       37.45        25.48        18.51        24.59        30.21        27.81 
TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5854 TCGA-DU-5855 
       17.19        17.46        18.61        14.56         8.45         6.81 
TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 
       17.49       211.17        49.02        65.75         1.22         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
       11.64       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7292 TCGA-DU-7301 TCGA-DU-7306 
        8.84       117.40        90.77         7.96        25.91        41.98 
TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
        2.76        23.74        14.60        20.68        19.13        16.96 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S6 
       29.85        24.43        26.17        24.99        33.96        95.11 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TD 
       11.41        26.76        21.30       139.04        84.33         7.50 
TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YD 
       38.89         0.56        50.14        41.13       130.78        14.30 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z6 
       16.18        21.30        51.88        13.08        73.48        32.35 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 
        0.20        47.77        36.82        18.77        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7643 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-A4MU 
       18.44        15.35        20.09        13.68        16.01        10.72 
TCGA-FG-A4MW TCGA-FG-A60L TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87Q TCGA-HT-7473 
       18.38        21.53        10.78        48.69         5.72        16.54 
TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7692 
       17.42        24.26       122.47        56.09        31.69         2.96 
TCGA-HT-7693 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8011 TCGA-HT-8013 
       17.52         0.49         3.72        11.28        16.24        63.55 
TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS 
       12.23         2.50        13.78        34.19        15.72         0.23 
TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A616 TCGA-HT-A617 
        0.13         0.07        27.35         5.33         1.81        16.14 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KM TCGA-KT-A7W1 TCGA-P5-A5EV 
       35.44        24.92        31.63        20.71        14.40         0.23 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72U TCGA-P5-A731 TCGA-P5-A733 
        2.30         9.44         5.88         0.23         9.01        13.61 
TCGA-P5-A736 TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6X3 
        7.56        19.33        14.83        14.53        12.23        10.29 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-RY-A845 TCGA-S9-A6TY 
        1.91        16.50        16.70        12.99        19.59        35.38 
TCGA-S9-A6U0 TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IZ 
       24.39        19.86        18.61        36.13        26.93        19.99 
TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R2 
       20.02        15.06        18.54        28.37       169.84        10.39 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84H TCGA-TM-A84M 
       54.77        48.33        34.78        24.92        30.44        24.79 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-VW-A7QS TCGA-VW-A8FI 
       15.98         2.04        36.69        30.05        23.21         8.05 
TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 
       20.81         7.63        11.77         4.73        18.35        10.59 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.59        20.61        87.06        77.65        20.12        42.74 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       12.16         2.83        14.14         3.62        10.72        18.31 
TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        6.87        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
        9.57        19.73        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.25        89.72        22.72        51.32         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       16.96         3.48        27.02        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.65        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
       25.71         4.37        25.12        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
        9.27        16.21         3.35        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70        20.38        47.61         6.94        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 
        0.20        10.29        11.74         2.33        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 
        3.19         9.44         3.42        56.91         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        4.18        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16        19.82        13.64        13.32 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
       48.69        10.82         9.01         0.26        72.36         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.70         0.92        43.46        46.19         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 
        4.04        26.79        11.84        15.32        13.61         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2567 TCGA-06-6390 TCGA-06-6694 TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 
        4.37         5.39         7.36        22.68         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 TCGA-08-0356 
       25.71        12.16         9.80         1.28        17.95        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       37.58        22.29         3.39        12.23        14.93        18.02 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0517 
       15.35        13.97         0.72        12.56         4.27        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
       19.33        10.75        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        5.82         7.59        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
       14.53         3.98         4.14         2.24        11.24         1.35 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        5.39         2.04        28.93        19.30         0.79        13.78 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 
       19.10        13.28         3.91        26.07        11.77        21.90 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 
        0.66        10.75         9.07         5.95         4.64        31.33 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        1.58         7.92         2.33         7.30        14.93        11.28 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       14.53        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       22.68         5.42         7.36        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

$`AMP PEAK 14(7Q32.3) WILD-TYPE`
TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K 
       46.72        31.82        42.05        62.01        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5416 
       20.45        18.64        45.60        42.77        59.38         6.71 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TL TCGA-12-0615 TCGA-12-1602 TCGA-12-3652 
        4.96        26.79        17.72        15.35         6.77        34.92 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 TCGA-14-1402 TCGA-14-1452 
       15.12        11.97         2.89        16.50        32.05         7.10 
TCGA-14-1453 TCGA-14-1821 TCGA-14-3477 TCGA-16-1056 TCGA-16-1060 TCGA-19-0964 
        1.15        17.79         3.78        14.01         9.14         3.39 
TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 TCGA-19-5951 TCGA-19-5956 
        3.25         4.87         1.08         4.08         8.02        22.49 
TCGA-27-1836 TCGA-27-2527 TCGA-27-2528 TCGA-28-1756 TCGA-32-1973 TCGA-32-1977 
       30.05        14.40        15.78         2.83        21.07         0.10 
TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-41-4097 
       15.95        22.78        21.14        19.86        10.85         0.20 
TCGA-76-6193 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-6290 
        2.70        36.36        60.10        40.18         0.26        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 
       46.95        48.30        49.94        49.12        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-A4XA TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P 
       18.84        33.57        72.95        31.63        24.20        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU 
       63.88        46.06        17.19        54.25        23.21        13.71 
TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 
       18.02        17.46         6.74        13.38       182.33        18.94 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 
       15.16        52.11        22.42        75.16        46.06        87.45 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
      114.08         2.40        62.96        30.67        26.30        10.36 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-8158 
       94.32        18.94        44.02        60.30        23.31         5.10 
TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A6S2 
       21.40        15.48        14.17        33.27        31.69        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC 
       21.57        20.98        22.29        17.98        51.52        37.38 
TCGA-DU-A7TG TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       44.42        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       95.57        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       75.02        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z4 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6689 
      145.05        39.48         0.23        25.48        52.21        14.93 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8188 
       17.88        22.55        20.61        28.34        14.24        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       22.52        32.61        38.27        18.71        23.70        14.76 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FN-7833 
       15.02        16.44        22.26        28.54        36.66        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        3.75         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 
        4.57        17.29         3.16        22.06        45.99        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74         0.10        14.96         0.10         0.10 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 
        5.33        35.47        31.43         1.64         9.40         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 
       37.87        33.01         6.25         0.10         0.46         5.56 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5RB 
        0.23        29.59        28.27        26.04        20.22         0.10 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B TCGA-HW-7486 TCGA-HW-7487 
        2.70        16.93        16.83        17.52        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       41.49        68.32        69.27        39.75        40.01        42.54 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EW TCGA-P5-A5EX 
       12.76        28.87        19.00        14.40         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X 
        2.37         7.96         7.59         1.28        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       11.64        10.95         9.60        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 
       14.04        13.61        13.41         9.17        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       16.73        11.08        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46         9.90        28.08         2.07        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 
       87.12        18.77        41.10        40.93        36.82        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IY 
       31.10        26.47        18.64        14.07         7.92        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QZ TCGA-S9-A7R3 TCGA-S9-A7R4 
        8.19         2.04        20.68        27.16        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF 
       98.63        31.59        18.71        20.48        49.32        65.39 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        28.08        24.16        40.83 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ 
       19.69        40.41        44.09        33.73        31.20        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       23.47        37.05        16.01        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-02-0007 
       39.88        43.40        45.80        46.88        37.71        23.18 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0024 TCGA-02-0026 TCGA-02-0028 TCGA-02-0039 
       35.41        20.71        53.10        24.59        90.58        10.52 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 
       14.73         3.22         8.35         6.02        26.43        28.70 
TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 
       12.62        65.00        99.98        10.59        12.39        47.11 
TCGA-02-2483 TCGA-06-0122 TCGA-06-0127 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 
       15.32         6.15         3.98        33.67         2.20        20.09 
TCGA-06-0158 TCGA-06-0160 TCGA-06-0165 TCGA-06-0178 TCGA-06-0219 TCGA-06-0240 
       10.82        11.80        10.65        88.14         0.72        20.42 
TCGA-06-0410 TCGA-06-1805 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 
        4.70        33.90        16.64         5.98         0.43        31.50 
TCGA-06-6389 TCGA-06-6693 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0350 
        7.79       120.56        37.84         4.18       115.86        29.23 
TCGA-08-0351 TCGA-08-0353 TCGA-08-0355 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       65.33         8.42        24.56        42.15        11.08        19.59 
TCGA-08-0521 TCGA-08-0524 TCGA-12-1091 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 
        4.80         7.27        33.21        50.53        53.19        16.37 
TCGA-19-1388 TCGA-26-5133 TCGA-26-5134 TCGA-28-2514 TCGA-28-5208 TCGA-28-5216 
       12.95        14.86         5.49         5.26        17.88        13.64 
TCGA-28-5220 
       12.76 

  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                       211.17                        182.33 
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                        14.04                         21.37 
[1] "0.1 - 211.2 (14.0)" "0.0 - 182.3 (21.4)"
[1] "hr=" "3.2"
D14V2, continuous
D14V3, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q32.3) MUTATED   473 181
  AMP PEAK 14(7Q32.3) WILD-TYPE 100 331
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q32.3) MUTATED    473  181
  AMP PEAK 14(7Q32.3) WILD-TYPE  100  331
                        clus
vv                       AMP PEAK 14(7Q32.3) MUTATED
  BRAIN                                          473
  CENTRAL NERVOUS SYSTEM                         181
                        clus
vv                       AMP PEAK 14(7Q32.3) WILD-TYPE
  BRAIN                                            100
  CENTRAL NERVOUS SYSTEM                           331
[1] 2 2
[1] FALSE
D14V4, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q32.3) MUTATED   276 378
  AMP PEAK 14(7Q32.3) WILD-TYPE 177 254
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q32.3) MUTATED    276  378
  AMP PEAK 14(7Q32.3) WILD-TYPE  177  254
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  FEMALE                         276                           177
  MALE                           378                           254
[1] 2 2
[1] FALSE
D14V5, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q32.3) MUTATED   111 508
  AMP PEAK 14(7Q32.3) WILD-TYPE 147 262
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q32.3) MUTATED    111  508
  AMP PEAK 14(7Q32.3) WILD-TYPE  147  262
     clus
vv    AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  NO                          111                           147
  YES                         508                           262
[1] 2 2
[1] FALSE
D14V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 14(7Q32.3) MUTATED            77                            23
  AMP PEAK 14(7Q32.3) WILD-TYPE         117                             7
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 14(7Q32.3) MUTATED                 49                55
  AMP PEAK 14(7Q32.3) WILD-TYPE               80               134
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 14(7Q32.3) MUTATED                    12
  AMP PEAK 14(7Q32.3) WILD-TYPE                   6
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 14(7Q32.3) MUTATED                               438
  AMP PEAK 14(7Q32.3) WILD-TYPE                              87
D14V7, multiclass
                                 clus
vv                                AMP PEAK 14(7Q32.3) MUTATED
  ASTROCYTOMA                                              77
  GLIOBLASTOMA MULTIFORME (GBM)                            23
  OLIGOASTROCYTOMA                                         49
  OLIGODENDROGLIOMA                                        55
  TREATED PRIMARY GBM                                      12
  UNTREATED PRIMARY (DE NOVO) GBM                         438
                                 clus
vv                                AMP PEAK 14(7Q32.3) WILD-TYPE
  ASTROCYTOMA                                               117
  GLIOBLASTOMA MULTIFORME (GBM)                               7
  OLIGOASTROCYTOMA                                           80
  OLIGODENDROGLIOMA                                         134
  TREATED PRIMARY GBM                                         6
  UNTREATED PRIMARY (DE NOVO) GBM                            87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 14(7Q32.3) MUTATED                                  1    11
  AMP PEAK 14(7Q32.3) WILD-TYPE                                0    10
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 14(7Q32.3) MUTATED                          55   566
  AMP PEAK 14(7Q32.3) WILD-TYPE                        16   393
D14V8, multiclass
                                  clus
vv                                 AMP PEAK 14(7Q32.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     11
  BLACK OR AFRICAN AMERICAN                                 55
  WHITE                                                    566
                                  clus
vv                                 AMP PEAK 14(7Q32.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       10
  BLACK OR AFRICAN AMERICAN                                   16
  WHITE                                                      393
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V9, binary
                               cls
clus                              0   1
  AMP PEAK 14(7Q32.3) MUTATED    16 560
  AMP PEAK 14(7Q32.3) WILD-TYPE  28 361
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(7Q32.3) MUTATED     16  560
  AMP PEAK 14(7Q32.3) WILD-TYPE   28  361
                        clus
vv                       AMP PEAK 14(7Q32.3) MUTATED
  HISPANIC OR LATINO                              16
  NOT HISPANIC OR LATINO                         560
                        clus
vv                       AMP PEAK 14(7Q32.3) WILD-TYPE
  HISPANIC OR LATINO                                28
  NOT HISPANIC OR LATINO                           361
[1] 2 2
[1] FALSE

Clustering(15) Variable = AMP PEAK 15(8Q24.21) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 15(8Q24.21) MUTATED    87  82
  AMP PEAK 15(8Q24.21) WILD-TYPE 393 516
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           169                            909 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                            82                            516 
$`AMP PEAK 15(8Q24.21) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-5856 TCGA-06-6701 TCGA-12-1092 TCGA-12-1598 
        3.98        51.55         3.75         4.96        21.73        15.65 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0865 TCGA-14-1453 TCGA-14-1456 
        6.77        44.02        14.53        16.50         1.15        40.96 
TCGA-14-1825 TCGA-14-3477 TCGA-19-1392 TCGA-19-2619 TCGA-19-A6J5 TCGA-27-1834 
        7.63         3.78         3.65         9.67        28.54        40.54 
TCGA-27-2521 TCGA-28-1746 TCGA-32-1976 TCGA-32-1978 TCGA-32-2632 TCGA-32-4210 
       16.77         0.20         0.49        15.85         8.84         3.72 
TCGA-41-2573 TCGA-41-4097 TCGA-41-5651 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6290 
        8.94         0.20        15.12        36.36        40.18        37.38 
TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
       46.95        50.86        78.28        30.21        39.78        37.45 
TCGA-DB-A64X TCGA-DH-5143 TCGA-DH-A669 TCGA-DH-A66G TCGA-DH-A7UT TCGA-DU-5871 
       18.51        46.06        30.21        17.19        17.46        18.94 
TCGA-DU-6399 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7010 TCGA-DU-7013 TCGA-DU-7014 
       65.75        94.52       114.08        14.99         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7304 TCGA-DU-8158 TCGA-DU-8163 TCGA-DU-8167 TCGA-DU-A5TS 
       90.77        23.31         5.10        20.68        15.48        31.69 
TCGA-DU-A5TW TCGA-DU-A6S7 TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TC 
       24.99        20.98        17.98       139.04        84.33        37.38 
TCGA-DU-A7TI TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-A7YI 
       38.89        67.46        41.13        79.99        57.93         3.65 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6691 TCGA-FG-7634 
       36.82       146.14        47.77        52.21        41.33        15.35 
TCGA-FG-8188 TCGA-FG-A4MT TCGA-FG-A4MY TCGA-FG-A70Y TCGA-HT-7473 TCGA-HT-7475 
       14.96        38.27        23.70        28.54        16.54        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7604 TCGA-HT-7676 
        6.54        24.26        40.34       106.95       122.47         0.16 
TCGA-HT-7689 TCGA-HT-7855 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-8011 TCGA-HT-8013 
       14.96        19.23        23.61         3.68        16.24        63.55 
TCGA-HT-8106 TCGA-HT-8111 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A74J 
        0.10         0.23        20.22         2.70         1.81        10.52 
TCGA-HT-A74O TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72W TCGA-QH-A6CW 
        0.10         5.88         7.96         7.59        10.42        13.61 
TCGA-QH-A6XA TCGA-RY-A83Z TCGA-S9-A6TY TCGA-S9-A6U6 TCGA-S9-A6WG TCGA-S9-A6WH 
       16.50         9.90        35.38        35.15        85.55        38.56 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7QW TCGA-S9-A7QX TCGA-TM-A7CF TCGA-TM-A84H 
       18.61        18.64        15.06        18.54        65.39        30.44 
TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RM TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       25.38        23.80        15.98        36.69        26.14        25.87 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CF TCGA-WY-A858 
       61.41        26.99        45.93        13.51        20.02        43.96 
TCGA-06-0209 TCGA-02-0010 TCGA-02-0014 TCGA-02-0024 TCGA-02-0037 TCGA-02-0055 
        7.63        35.41        82.59        53.10         3.62         2.50 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0084 TCGA-02-0104 TCGA-02-0325 TCGA-02-2483 
       10.19        20.84        12.62        65.00        10.62        15.32 
TCGA-06-0128 TCGA-06-0146 TCGA-06-0177 TCGA-06-0188 TCGA-06-0192 TCGA-06-0211 
       22.72        20.09         4.18        44.58        38.96        11.84 
TCGA-06-0409 TCGA-06-0414 TCGA-06-0686 TCGA-06-2557 TCGA-06-2569 TCGA-06-6389 
       72.36        35.11        14.20         1.08         0.43         7.79 
TCGA-06-6693 TCGA-06-6694 TCGA-08-0350 TCGA-08-0351 TCGA-08-0516 TCGA-12-0616 
      120.56         7.36        29.23        65.33        19.59        14.73 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0827 TCGA-12-1099 TCGA-14-0817 TCGA-14-0867 
       91.76        24.79        38.76         4.14         5.39         2.04 
TCGA-14-0871 TCGA-19-1388 TCGA-26-5133 TCGA-28-5204 TCGA-28-5215 TCGA-28-5218 
       28.93        12.95        14.86        14.93        11.01         5.16 
TCGA-28-5219 
       22.68 

$`AMP PEAK 15(8Q24.21) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        6.71         2.73         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 TCGA-06-A5U1 
       12.85         4.77         1.55         4.77        26.79         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1599 
        3.12         2.56        14.60        17.72        15.35        25.68 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       14.73        59.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.92        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
        0.95         6.21        23.05        13.78         3.25         2.89 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       26.33        15.95         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 
       58.78        23.11         7.10        30.18         0.92         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 
       12.43         0.99         1.97        17.79        17.85         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 
        7.17        17.49         7.96         3.42        17.59        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1786 
        6.41         8.61        14.27         3.39        25.38         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         3.25         0.13         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 
       22.49        14.07        16.80        14.96        17.79        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       13.87         9.73         7.13         9.37         9.40         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
       18.97        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 
        2.83         0.13         0.66         6.74         4.77        15.39 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       21.07         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.86        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        25.18        21.14        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
       19.23         0.85        13.35         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
       11.84        12.46         4.08         1.45        25.58         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.91         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4944 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       60.10         0.26        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       26.76        48.30        49.94        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       75.25        47.93        72.92        91.13        44.52        36.56 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       46.42        18.84        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       29.23        14.40        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F 
       16.18        19.96        63.88        24.59        27.81        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       54.25        23.21        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       75.16        46.06         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
      133.74        19.89        16.83         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7018 
       62.96       156.23       154.36       105.21         6.54        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 
       25.91        60.30        41.98         2.76        23.74        14.60 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        16.96        14.17        33.27        29.85 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       24.43        26.17        33.96        25.55        21.57        95.11 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7TB TCGA-DU-A7TD 
       22.29        11.41        26.76        21.30        51.52         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       44.42         0.56        50.14       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK 
      130.78        14.30        29.13        93.21        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       16.18        21.30        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
       32.45        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
        0.23         0.20        25.48        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       42.54        18.44        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-8191 
       28.34        13.68        14.24        16.01        22.52        32.61 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       10.72        18.38        18.71        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       16.44        22.26        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 
        0.03         3.75         6.38        75.19        95.93       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 
        4.01         5.03        29.85        23.18         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
       14.27        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        31.69         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
        6.90        14.53        39.48        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 
        0.49        37.15         0.33         0.13         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8015 
        3.72        11.28        31.43         1.64         9.40         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 
       37.87        33.01        12.23         6.25         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
        5.56        13.78        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C 
        5.33        16.93        16.14        16.83        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
        2.43        15.35        11.05        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       68.32        69.27        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       24.92        31.63        12.76        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z 
        2.30         9.44         1.28         0.23        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       16.73         1.91        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       94.03        32.65        30.87         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       40.93        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WQ TCGA-S9-A7IQ 
       84.99        31.10        19.86        26.47        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
        2.04        20.68        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C 
       54.77        48.33        49.32        34.78        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI 
       33.24        18.61        14.93        21.37        19.69         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RU 
       40.41        44.09        33.73        31.20        30.05        33.93 
TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       31.36        43.20         0.10         7.89        39.16        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
       11.77         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        77.65        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 
       12.16        90.58         2.83        14.14        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.31         6.87        14.73         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        6.54        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 
       26.43        28.70        25.05         5.49        27.25        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       27.02        11.67        17.65        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.90         7.73         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.27        16.21         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
       11.74         2.33        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         3.42        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
       91.00        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       27.22        15.42        10.42         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        0.39         7.66         8.42         7.40         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         9.01         0.26         4.70         9.57 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        3.16        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       20.78        26.76        23.93         6.84         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 
       11.84        15.32        13.61        33.90        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-6390 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        4.37        31.50         5.39        22.68        37.84         4.18 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       13.97         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.68        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       18.41         7.56        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0820 TCGA-12-0821 
        7.63         9.73        14.93        14.86        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-1037 
       14.53         3.98         2.24        11.24         1.35        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        0.79        13.78        50.53        19.10        53.19        13.28 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
        3.91        26.07        16.37        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5134 
       10.75         9.07         5.95         4.64        31.33         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 
        1.58         7.92         2.33         7.30         5.26        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       17.88        14.53        11.77        31.27        23.44        13.64 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       12.76         5.42         7.36        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                        146.14                         211.17 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                         20.02                          15.32 
[1] "0.1 - 146.1 (20.0)" "0.0 - 211.2 (15.3)"
[1] "hr=" "1.5"
D15V2, continuous
D15V3, binary
                                cls
clus                               0   1
  AMP PEAK 15(8Q24.21) MUTATED    69 100
  AMP PEAK 15(8Q24.21) WILD-TYPE 504 412
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.21) MUTATED     69  100
  AMP PEAK 15(8Q24.21) WILD-TYPE  504  412
                        clus
vv                       AMP PEAK 15(8Q24.21) MUTATED
  BRAIN                                            69
  CENTRAL NERVOUS SYSTEM                          100
                        clus
vv                       AMP PEAK 15(8Q24.21) WILD-TYPE
  BRAIN                                             504
  CENTRAL NERVOUS SYSTEM                            412
[1] 2 2
[1] FALSE
D15V4, binary
                                cls
clus                               0   1
  AMP PEAK 15(8Q24.21) MUTATED    69 100
  AMP PEAK 15(8Q24.21) WILD-TYPE 384 532
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.21) MUTATED     69  100
  AMP PEAK 15(8Q24.21) WILD-TYPE  384  532
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  FEMALE                           69                            384
  MALE                            100                            532
[1] 2 2
[1] FALSE
D15V5, binary
                                cls
clus                               0   1
  AMP PEAK 15(8Q24.21) MUTATED    35 121
  AMP PEAK 15(8Q24.21) WILD-TYPE 223 649
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.21) MUTATED     35  121
  AMP PEAK 15(8Q24.21) WILD-TYPE  223  649
     clus
vv    AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  NO                            35                            223
  YES                          121                            649
[1] 2 2
[1] FALSE
D15V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 15(8Q24.21) MUTATED            47                             2
  AMP PEAK 15(8Q24.21) WILD-TYPE         147                            28
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 15(8Q24.21) MUTATED                 29                24
  AMP PEAK 15(8Q24.21) WILD-TYPE              100               165
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 15(8Q24.21) MUTATED                     2
  AMP PEAK 15(8Q24.21) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 15(8Q24.21) MUTATED                                65
  AMP PEAK 15(8Q24.21) WILD-TYPE                             460
D15V7, multiclass
                                 clus
vv                                AMP PEAK 15(8Q24.21) MUTATED
  ASTROCYTOMA                                               47
  GLIOBLASTOMA MULTIFORME (GBM)                              2
  OLIGOASTROCYTOMA                                          29
  OLIGODENDROGLIOMA                                         24
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           65
                                 clus
vv                                AMP PEAK 15(8Q24.21) WILD-TYPE
  ASTROCYTOMA                                                147
  GLIOBLASTOMA MULTIFORME (GBM)                               28
  OLIGOASTROCYTOMA                                           100
  OLIGODENDROGLIOMA                                          165
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            460
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 15(8Q24.21) MUTATED                                  0     1
  AMP PEAK 15(8Q24.21) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 15(8Q24.21) MUTATED                          13   153
  AMP PEAK 15(8Q24.21) WILD-TYPE                        58   806
D15V8, multiclass
                                  clus
vv                                 AMP PEAK 15(8Q24.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                  13
  WHITE                                                     153
                                  clus
vv                                 AMP PEAK 15(8Q24.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    58
  WHITE                                                       806
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V9, binary
                                cls
clus                               0   1
  AMP PEAK 15(8Q24.21) MUTATED    10 142
  AMP PEAK 15(8Q24.21) WILD-TYPE  34 779
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.21) MUTATED     10  142
  AMP PEAK 15(8Q24.21) WILD-TYPE   34  779
                        clus
vv                       AMP PEAK 15(8Q24.21) MUTATED
  HISPANIC OR LATINO                               10
  NOT HISPANIC OR LATINO                          142
                        clus
vv                       AMP PEAK 15(8Q24.21) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            779
[1] 2 2
[1] FALSE

Clustering(16) Variable = AMP PEAK 16(9Q34.3) MUTATION ANALYSIS
D16V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 16(9Q34.3) MUTATED    51  90
  AMP PEAK 16(9Q34.3) WILD-TYPE 429 508
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                          141                           937 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           90                           508 
$`AMP PEAK 16(9Q34.3) MUTATED`
TCGA-CS-6665 TCGA-DU-A76O TCGA-FG-A60K TCGA-FG-A87N TCGA-06-5408 TCGA-06-5415 
       51.55        17.16        17.82        18.64        11.74         8.55 
TCGA-06-5418 TCGA-06-5859 TCGA-06-A6S0 TCGA-12-3646 TCGA-12-5299 TCGA-14-0790 
        2.73         4.57         3.12        44.02         3.22        13.78 
TCGA-14-0812 TCGA-14-1453 TCGA-14-1455 TCGA-14-1821 TCGA-14-3477 TCGA-19-1390 
        3.25         1.15         0.92        17.79         3.78        25.38 
TCGA-19-1392 TCGA-19-2620 TCGA-19-A6J5 TCGA-26-5136 TCGA-27-1834 TCGA-27-1838 
        3.65         4.87        28.54        18.97        40.54        11.51 
TCGA-28-1750 TCGA-28-1751 TCGA-28-2509 TCGA-32-1976 TCGA-32-1979 TCGA-32-1991 
        8.35         7.63         4.77         0.49        19.50        16.93 
TCGA-32-2495 TCGA-32-2615 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 TCGA-76-4934 
       15.02        15.95         8.94         9.53        11.84         2.53 
TCGA-76-4935 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6290 TCGA-DB-A4XE TCGA-DB-A64R 
       36.85        53.62         6.38        37.38        37.45        31.40 
TCGA-DB-A64X TCGA-DH-5142 TCGA-DU-7010 TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 
       18.51        63.88        14.99        18.94         5.10        23.74 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8168 TCGA-DU-A5TT TCGA-E1-5302 TCGA-E1-5304 
       21.40        19.13        14.17        24.43        50.14        41.13 
TCGA-E1-A7Z3 TCGA-FG-A4MY TCGA-FG-A6J3 TCGA-HT-7468 TCGA-HT-7477 TCGA-HT-7478 
       73.48        23.70        22.26         6.67        24.26         6.38 
TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7686 TCGA-HT-7873 TCGA-HT-A5RB TCGA-HT-A617 
      172.77         5.03        42.74        23.61         0.10        16.14 
TCGA-HT-A61B TCGA-HT-A74J TCGA-HW-8319 TCGA-S9-A6TW TCGA-S9-A6WH TCGA-S9-A6WM 
       17.52        10.52        39.75        41.10        38.56        19.86 
TCGA-S9-A7QW TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84T TCGA-TQ-A7RM TCGA-TQ-A7RR 
       15.06        59.05        30.44        23.80        36.69        25.87 
TCGA-WY-A85E TCGA-02-0001 TCGA-02-0014 TCGA-02-0025 TCGA-02-0051 TCGA-02-0052 
       20.81        11.77        82.59        42.74        15.09        12.59 
TCGA-02-0054 TCGA-02-0069 TCGA-02-0074 TCGA-02-0104 TCGA-02-0106 TCGA-02-0114 
        6.54        28.70        10.19        65.00        11.67        99.98 
TCGA-02-0266 TCGA-02-0281 TCGA-02-0285 TCGA-02-0325 TCGA-02-0332 TCGA-02-0456 
       17.72         3.98        13.87        10.62        25.71         3.35 
TCGA-02-2483 TCGA-06-0122 TCGA-06-0158 TCGA-06-0159 TCGA-06-0166 TCGA-06-0175 
       15.32         6.15        10.82         9.44         5.85         4.04 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0195 TCGA-06-0216 TCGA-06-0410 TCGA-06-0413 
       73.84        44.58         7.40        24.16         4.70         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0744 TCGA-06-0876 TCGA-06-1087 TCGA-06-2558 
       35.11        12.62        46.88        46.19         4.04        12.49 
TCGA-06-2569 TCGA-08-0386 TCGA-08-0516 TCGA-08-0520 TCGA-12-0618 TCGA-12-0619 
        0.43        18.02        19.59        10.75        12.99        34.92 
TCGA-12-0654 TCGA-12-0691 TCGA-12-0773 TCGA-12-0776 TCGA-12-0818 TCGA-12-1088 
        7.59        12.13        43.23         9.73        91.76       127.59 
TCGA-12-1096 TCGA-12-1098 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-15-1449 
        9.11         3.98         1.35         5.39         2.04        13.28 
TCGA-16-0850 TCGA-19-0962 TCGA-19-1388 TCGA-26-6174 TCGA-28-5204 TCGA-28-5215 
       16.37         0.66        12.95         2.33        14.93        11.01 
TCGA-28-5216 TCGA-76-6280 TCGA-76-6660 
       13.64        11.38         3.75 

$`AMP PEAK 16(9Q34.3) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A713 TCGA-HT-A619 TCGA-HW-7490 
       62.01        23.90        20.09        20.45        21.40        45.60 
TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
       42.77        59.38        15.32         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 
        8.81         8.98         6.71         3.75         6.15         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
       26.79         1.87         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
       21.73        15.65        25.68        14.73         6.77        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
       14.93         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
       23.05         2.89        16.50        26.33        15.95         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.18        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.42        17.59        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
        9.14        21.24        13.97         6.41         8.61        14.27 
TCGA-19-0964 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.39         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       17.79        10.03        13.87         9.73         7.13         9.37 
TCGA-26-5132 TCGA-26-5135 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        9.40         8.88        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       24.23        21.30        30.05        14.04        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       16.77        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        0.20         2.53         9.21         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-32-1970 TCGA-32-1973 
        2.83         0.13         0.66         6.74        15.39        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85         1.18         4.67        12.69        14.86 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       12.23        20.78         8.84        22.78        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
       13.35         0.99         4.44         0.20        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        3.65         9.17        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       18.64        36.20         5.92         6.28        20.55       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       21.01        17.69        26.76        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       18.84        30.21        39.78        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64U 
       24.20        25.48        30.12         5.98        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       29.23        14.40        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       16.18        19.96        46.06        24.59        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23       154.36       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
        7.96        94.32        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 
       41.98         2.76        14.60        20.68        16.96        15.48 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       33.27        29.85        31.69        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       26.76        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 
       37.38         7.50        44.42        38.89         0.56        67.46 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       16.18        21.30        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       32.45        36.82       146.14        13.08       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       13.68        14.24        16.01        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L 
       38.27        10.72        18.38        18.71        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
        5.72        27.52         0.10        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7479 
        0.03        16.54         3.75        17.42         6.54        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 
       75.19        95.93       106.95         4.01        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
        0.76        44.68         6.05         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 
        0.13        20.22         0.07        27.35         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K 
       16.93         1.81        16.83        17.65         2.43        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       69.27        35.44        40.01        42.54        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        28.87        20.71        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.96         7.59         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.70        11.08        12.99        88.83        94.03        32.65 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        62.17        87.12        18.77        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       85.55        84.99        31.10        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QX TCGA-S9-A7QY 
       20.02         8.19         2.04        20.68        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84I 
       34.78        65.39        24.92        16.18        40.64        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       14.93        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU 
       44.09        33.73        31.20        30.05        26.14        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-06-0209 
       39.88        43.40        45.80        46.88        37.71         7.63 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 
       20.61        87.06        77.65        20.12        53.10        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0055 
       10.52        18.31         6.87        14.73         3.22         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       27.02        17.65        23.18        92.65        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 TCGA-02-0290 
       16.54        16.93        10.75        14.47        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
       12.23         9.90         7.73         7.33        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
       11.34         9.27        16.21        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       20.32         2.70        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 
       46.59        12.33        13.94        10.45         3.19        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        56.91        10.65        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
        3.65        69.90        27.22        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        4.67         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
       11.84         0.53        15.02         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       72.36         9.57         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57        14.20        26.40         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        0.92        43.46         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       26.76        23.93         6.84        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        33.90         1.08         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95        16.64         5.98         4.37        31.50 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
        7.79         5.39       120.56         7.36        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        4.18       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        9.80        29.23        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       14.93        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 
       42.15        11.08        58.68        19.33         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0620 TCGA-12-0656 
       15.98        18.41         7.56        14.73        10.45        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 
       28.41        15.06        53.85         7.63        14.93        14.86 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
        8.94        20.58         5.82         7.59        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
       12.23        15.85        14.53         4.14         2.24        11.24 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 
       53.19         3.91        26.07        11.77        21.90        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        9.07         5.95         4.64        31.33        14.86         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 
        1.58         7.92         7.30         5.26        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 
       14.53        11.77        31.27        23.44         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 
       12.76         5.42         7.36         5.42         1.61        17.72 
TCGA-87-5896 
       26.30 

  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                       172.77                        211.17 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                        14.99                         16.18 
[1] "0.1 - 172.8 (15.0)" "0.0 - 211.2 (16.2)"
[1] "hr=" "1.3"
D16V2, continuous
D16V3, binary
                               cls
clus                              0   1
  AMP PEAK 16(9Q34.3) MUTATED    95  46
  AMP PEAK 16(9Q34.3) WILD-TYPE 478 466
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED     95   46
  AMP PEAK 16(9Q34.3) WILD-TYPE  478  466
                        clus
vv                       AMP PEAK 16(9Q34.3) MUTATED
  BRAIN                                           95
  CENTRAL NERVOUS SYSTEM                          46
                        clus
vv                       AMP PEAK 16(9Q34.3) WILD-TYPE
  BRAIN                                            478
  CENTRAL NERVOUS SYSTEM                           466
[1] 2 2
[1] FALSE
D16V4, binary
                               cls
clus                              0   1
  AMP PEAK 16(9Q34.3) MUTATED    69  72
  AMP PEAK 16(9Q34.3) WILD-TYPE 384 560
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED     69   72
  AMP PEAK 16(9Q34.3) WILD-TYPE  384  560
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  FEMALE                          69                           384
  MALE                            72                           560
[1] 2 2
[1] FALSE
D16V5, binary
                               cls
clus                              0   1
  AMP PEAK 16(9Q34.3) MUTATED    25 108
  AMP PEAK 16(9Q34.3) WILD-TYPE 233 662
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED     25  108
  AMP PEAK 16(9Q34.3) WILD-TYPE  233  662
     clus
vv    AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  NO                           25                           233
  YES                         108                           662
[1] 2 2
[1] FALSE
D16V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 16(9Q34.3) MUTATED            24                             4
  AMP PEAK 16(9Q34.3) WILD-TYPE         170                            26
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 16(9Q34.3) MUTATED                 13                 9
  AMP PEAK 16(9Q34.3) WILD-TYPE              116               180
                               vv
clus                            TREATED PRIMARY GBM
  AMP PEAK 16(9Q34.3) MUTATED                     2
  AMP PEAK 16(9Q34.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 16(9Q34.3) MUTATED                                89
  AMP PEAK 16(9Q34.3) WILD-TYPE                             436
D16V7, multiclass
                                 clus
vv                                AMP PEAK 16(9Q34.3) MUTATED
  ASTROCYTOMA                                              24
  GLIOBLASTOMA MULTIFORME (GBM)                             4
  OLIGOASTROCYTOMA                                         13
  OLIGODENDROGLIOMA                                         9
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          89
                                 clus
vv                                AMP PEAK 16(9Q34.3) WILD-TYPE
  ASTROCYTOMA                                               170
  GLIOBLASTOMA MULTIFORME (GBM)                              26
  OLIGOASTROCYTOMA                                          116
  OLIGODENDROGLIOMA                                         180
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           436
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 16(9Q34.3) MUTATED                                  1     3
  AMP PEAK 16(9Q34.3) WILD-TYPE                                0    18
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 16(9Q34.3) MUTATED                           9   125
  AMP PEAK 16(9Q34.3) WILD-TYPE                        62   834
D16V8, multiclass
                                  clus
vv                                 AMP PEAK 16(9Q34.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      3
  BLACK OR AFRICAN AMERICAN                                  9
  WHITE                                                    125
                                  clus
vv                                 AMP PEAK 16(9Q34.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       18
  BLACK OR AFRICAN AMERICAN                                   62
  WHITE                                                      834
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V9, binary
                               cls
clus                              0   1
  AMP PEAK 16(9Q34.3) MUTATED     6 118
  AMP PEAK 16(9Q34.3) WILD-TYPE  38 803
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED      6  118
  AMP PEAK 16(9Q34.3) WILD-TYPE   38  803
                        clus
vv                       AMP PEAK 16(9Q34.3) MUTATED
  HISPANIC OR LATINO                               6
  NOT HISPANIC OR LATINO                         118
                        clus
vv                       AMP PEAK 16(9Q34.3) WILD-TYPE
  HISPANIC OR LATINO                                38
  NOT HISPANIC OR LATINO                           803
[1] 2 2
[1] FALSE

Clustering(17) Variable = AMP PEAK 17(10P15.1) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 17(10P15.1) MUTATED    57  31
  AMP PEAK 17(10P15.1) WILD-TYPE 423 567
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            88                            990 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            31                            567 
$`AMP PEAK 17(10P15.1) MUTATED`
TCGA-CS-6665 TCGA-DH-A66B TCGA-06-A7TL TCGA-14-1827 TCGA-14-3477 TCGA-27-2521 
       51.55        42.05        17.72         5.88         3.78        16.77 
TCGA-32-1976 TCGA-32-2632 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6666 TCGA-CS-6667 
        0.49         8.84        36.36        40.18        46.95        48.30 
TCGA-DB-5270 TCGA-DB-A4XE TCGA-DB-A75M TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5871 
      122.73        37.45        17.88        13.71        18.61        18.94 
TCGA-DU-6396 TCGA-DU-6408 TCGA-DU-7014 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7299 
       75.16       114.08       117.40        26.30         7.96        44.02 
TCGA-DU-7304 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5322 
       23.31        29.85        31.69        67.46        41.13       130.78 
TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YW TCGA-FG-6691 TCGA-FG-8185 TCGA-FG-A4MY 
        3.65        12.43        36.82        41.33        14.24        23.70 
TCGA-FG-A60L TCGA-FG-A70Y TCGA-HT-7470 TCGA-HT-7473 TCGA-HT-7476 TCGA-HT-7479 
       21.53        28.54        40.11        16.54         6.54        40.34 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7688 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-8106 
      106.95       172.77        31.69        23.61         3.68         0.10 
TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-8321 
        0.23        34.19         0.10        41.49        69.27        42.54 
TCGA-IK-7675 TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A72X TCGA-P5-A780 TCGA-QH-A6XA 
       19.00         2.30         5.88        13.25         2.37        16.50 
TCGA-RY-A845 TCGA-S9-A6U0 TCGA-S9-A7IS TCGA-S9-A7J0 TCGA-S9-A89Z TCGA-TM-A7CA 
       19.59        24.39         7.92        20.02        20.48        34.78 
TCGA-TM-A84H TCGA-TQ-A7RH TCGA-TQ-A7RV TCGA-VM-A8C8 TCGA-WH-A86K TCGA-WY-A858 
       30.44        15.98        61.41        45.93        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85E TCGA-02-0011 TCGA-02-0014 TCGA-02-0069 
       39.88        43.40        20.81        20.71        82.59        28.70 
TCGA-02-0080 TCGA-02-0087 TCGA-02-0114 TCGA-06-0402 TCGA-06-2569 TCGA-06-6389 
       89.72        57.76        99.98         0.26         0.43         7.79 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0517 TCGA-12-0818 
       29.23        65.33        58.68        91.76 

$`AMP PEAK 17(10P15.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-7300 
        1.48         3.98        46.88        46.72        31.82        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 
       26.79         1.87         3.12         2.56        14.60        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
       21.73        15.65        25.68        14.73         6.77        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       44.02        26.93        15.22        10.95        12.69        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       14.53        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
        0.95         6.21        23.05        13.78         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.79        17.85         7.63         7.17        17.49         7.96 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.42        17.59        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
        9.14        21.24        13.97         6.41         8.61        14.27 
TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        3.39        25.38         3.65         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       13.87         9.73         7.13         9.37         9.40         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
       18.97        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       18.08        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        4.77        15.39        21.07         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78        15.02        15.95        22.78        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
        0.20        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       36.20         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       43.89        60.10         0.26        21.01        53.62         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5273 
       17.69        26.76        37.38        49.94        49.12        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       36.56        78.28        46.42        18.84        30.21        39.78 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        11.24        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F 
       63.88        46.06        24.59        30.21        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DU-5847 TCGA-DU-5849 
       17.19        54.25        23.21        17.46        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 
      133.74        19.89        16.83        94.52         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7294 
        6.54         8.84        90.77        30.67        10.36        94.32 
TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       18.94        25.91        60.30        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       15.48        14.17        33.27        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
       51.52        37.38         7.50        44.42        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       50.14        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM 
       14.30        29.13        93.21        19.46        16.18        21.30 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YY 
       75.02        51.88        15.32         0.76        32.45       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       14.93        42.54        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8188 
       20.61        20.09        28.34        13.68        16.01        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A60J TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 
       14.76        15.02        16.44        22.26        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       48.69         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7478 
        0.13         0.03         3.75        17.42        24.26         6.38 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
       75.19        95.93         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 
        0.76        44.68         6.05        42.74         0.10        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
       37.15         0.33         0.13         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 
        0.10        37.87        33.01        12.23         6.25         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8563 TCGA-HT-8564 
        2.50         5.56        13.78        29.59        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       11.05        56.58        45.44        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       40.01        24.92        31.63        12.76        28.87        20.71 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5F0 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        9.44         7.96         7.59         1.28         0.23        10.42 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       12.23        19.20         3.45         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.34        16.73         1.91        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       41.10        40.93        35.38        36.82        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       26.93        23.51        19.99         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 
       99.06        30.05        98.63        31.59        18.71        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RW TCGA-TQ-A8XE 
       30.05        26.14        25.87        33.93        26.99        31.36 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       45.80        46.88        37.71         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0015 TCGA-02-0016 
       18.35        23.18        10.59        35.41        20.61        87.06 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       77.65        20.12        53.10        42.74        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.31         6.87        14.73         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 
       27.25        22.72        12.62        51.32         8.81        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.65        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.40         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.53        15.02        24.16         0.72        19.82 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       13.64        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       72.36         4.70         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       26.76        23.93         6.84         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       15.32        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
        4.37        31.50         5.39       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       12.16         9.80         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       18.02        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       42.15        11.08        19.59        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        7.27        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.86        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       33.21        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 
        3.98         4.14         2.24        11.24         1.35         5.39 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
        2.04        28.93        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       19.10        53.19        13.28         3.91        26.07        16.37 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       11.77        21.90         0.66        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
       12.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 
       13.64         5.16        22.68        12.76         5.42         7.36 
TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       11.38         5.42         3.75         1.61        17.72        26.30 

  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                        172.77                         211.17 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                        28.620                         15.335 
[1] "0.1 - 172.8 (28.6)" "0.0 - 211.2 (15.3)"
[1] "hr=" "2.5"
D17V2, continuous
D17V3, binary
                                cls
clus                               0   1
  AMP PEAK 17(10P15.1) MUTATED    19  69
  AMP PEAK 17(10P15.1) WILD-TYPE 554 443
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(10P15.1) MUTATED     19   69
  AMP PEAK 17(10P15.1) WILD-TYPE  554  443
                        clus
vv                       AMP PEAK 17(10P15.1) MUTATED
  BRAIN                                            19
  CENTRAL NERVOUS SYSTEM                           69
                        clus
vv                       AMP PEAK 17(10P15.1) WILD-TYPE
  BRAIN                                             554
  CENTRAL NERVOUS SYSTEM                            443
[1] 2 2
[1] FALSE
D17V4, binary
                                cls
clus                               0   1
  AMP PEAK 17(10P15.1) MUTATED    35  53
  AMP PEAK 17(10P15.1) WILD-TYPE 418 579
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(10P15.1) MUTATED     35   53
  AMP PEAK 17(10P15.1) WILD-TYPE  418  579
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  FEMALE                           35                            418
  MALE                             53                            579
[1] 2 2
[1] FALSE
D17V5, binary
                                cls
clus                               0   1
  AMP PEAK 17(10P15.1) MUTATED    20  62
  AMP PEAK 17(10P15.1) WILD-TYPE 238 708
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(10P15.1) MUTATED     20   62
  AMP PEAK 17(10P15.1) WILD-TYPE  238  708
     clus
vv    AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  NO                            20                            238
  YES                           62                            708
[1] 2 2
[1] FALSE
D17V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 17(10P15.1) MUTATED            37                             1
  AMP PEAK 17(10P15.1) WILD-TYPE         157                            29
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 17(10P15.1) MUTATED                 23                 9
  AMP PEAK 17(10P15.1) WILD-TYPE              106               180
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 17(10P15.1) MUTATED                     1
  AMP PEAK 17(10P15.1) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 17(10P15.1) MUTATED                                17
  AMP PEAK 17(10P15.1) WILD-TYPE                             508
D17V7, multiclass
                                 clus
vv                                AMP PEAK 17(10P15.1) MUTATED
  ASTROCYTOMA                                               37
  GLIOBLASTOMA MULTIFORME (GBM)                              1
  OLIGOASTROCYTOMA                                          23
  OLIGODENDROGLIOMA                                          9
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           17
                                 clus
vv                                AMP PEAK 17(10P15.1) WILD-TYPE
  ASTROCYTOMA                                                157
  GLIOBLASTOMA MULTIFORME (GBM)                               29
  OLIGOASTROCYTOMA                                           106
  OLIGODENDROGLIOMA                                          180
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            508
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 17(10P15.1) MUTATED                                  0     1
  AMP PEAK 17(10P15.1) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 17(10P15.1) MUTATED                           6    81
  AMP PEAK 17(10P15.1) WILD-TYPE                        65   878
D17V8, multiclass
                                  clus
vv                                 AMP PEAK 17(10P15.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                   6
  WHITE                                                      81
                                  clus
vv                                 AMP PEAK 17(10P15.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    65
  WHITE                                                       878
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V9, binary
                                cls
clus                               0   1
  AMP PEAK 17(10P15.1) MUTATED     7  73
  AMP PEAK 17(10P15.1) WILD-TYPE  37 848
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(10P15.1) MUTATED      7   73
  AMP PEAK 17(10P15.1) WILD-TYPE   37  848
                        clus
vv                       AMP PEAK 17(10P15.1) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                           73
                        clus
vv                       AMP PEAK 17(10P15.1) WILD-TYPE
  HISPANIC OR LATINO                                 37
  NOT HISPANIC OR LATINO                            848
[1] 2 2
[1] FALSE

Clustering(18) Variable = AMP PEAK 18(11P13) MUTATION ANALYSIS
D18V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 18(11P13) MUTATED    27  32
  AMP PEAK 18(11P13) WILD-TYPE 453 566
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          59                         1019 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          32                          566 
$`AMP PEAK 18(11P13) MUTATED`
TCGA-12-1598 TCGA-19-4065 TCGA-19-5958 TCGA-19-A60I TCGA-27-1838 TCGA-27-2521 
       15.65         7.04        14.07        17.79        11.51        16.77 
TCGA-27-2526 TCGA-CS-5396 TCGA-CS-6666 TCGA-DB-A4X9 TCGA-DB-A64L TCGA-DH-5144 
        2.86        53.62        46.95        46.42        24.20        24.59 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-7018 TCGA-DU-8168 TCGA-DU-A5TW 
      211.17        52.11         1.22        30.67        14.17        24.99 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-FG-5962 TCGA-FG-7634 TCGA-HT-7684 TCGA-HT-8109 
       20.98        22.29        47.77        15.35         6.05         5.56 
TCGA-HT-A74K TCGA-HW-A5KM TCGA-QH-A65X TCGA-QH-A6CZ TCGA-RY-A845 TCGA-S9-A6TW 
       15.35        20.71        15.85         9.17        19.59        41.10 
TCGA-S9-A6TY TCGA-S9-A6WH TCGA-S9-A7QY TCGA-TQ-A7RN TCGA-TQ-A7RW TCGA-VM-A8CA 
       35.38        38.56        28.37        33.73        26.99        13.51 
TCGA-02-0025 TCGA-02-0037 TCGA-02-0054 TCGA-02-0099 TCGA-02-0106 TCGA-02-0115 
       42.74         3.62         6.54         3.48        11.67        15.65 
TCGA-02-0258 TCGA-02-0290 TCGA-06-0130 TCGA-06-0160 TCGA-06-0221 TCGA-06-0743 
       16.54        15.95        12.95        11.80        19.82        26.40 
TCGA-06-1087 TCGA-06-2557 TCGA-08-0386 TCGA-08-0517 TCGA-12-0616 TCGA-12-0670 
        4.04         1.08        18.02        58.68        14.73        25.97 
TCGA-12-0826 TCGA-12-1093 TCGA-14-0871 TCGA-19-1388 TCGA-28-5207 
       27.78        15.98        28.93        12.95        11.28 

$`AMP PEAK 18(11P13) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M 
       20.45        18.64        21.40        45.60        42.77        59.38 
TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       15.32        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        4.57         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96        26.79         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 
       14.60        17.72        15.35        21.73        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       12.69        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 
       15.12        11.97         0.95         6.21        23.05        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
        3.25         2.89        16.50        26.33        15.95         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.97        17.79        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 
        7.17        17.49         7.96         3.78         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 
       13.97         6.41         8.61        14.27         3.39        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J5 
       12.10         1.78        22.49        16.80        14.96        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 
       24.23        40.54        21.30        30.05        14.04        24.76 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       18.08        16.08         7.59        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.39        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
       11.84         0.20        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        2.53        36.85        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       18.64        36.20         5.92         6.28        20.55       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 
       21.01         6.38        17.69        26.76        37.38        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       31.63        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       65.75        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84       117.40        90.77        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        16.96        15.48        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       31.69        24.43        26.17        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       95.11        11.41        26.76        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23         0.20        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 
       14.93        42.54        41.33        18.44        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       22.26        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.46         2.50        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.14        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       10.52        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       68.32        69.27        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-KT-A74X 
       24.92        31.63        12.76        28.87        19.00        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        9.44         5.88         7.96         7.59         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CS 
        4.41        15.16         2.53        12.62        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 
       14.83        14.53        13.61        12.23        13.41        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46         9.90        28.08         2.07        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       87.12        18.77        40.93        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL 
      123.65        75.25       135.22        85.55        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R1 
        2.04        20.68        15.06        18.54        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       40.41        44.09        36.69        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       25.87        33.93        61.41        31.36        45.93        43.20 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 
TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
        7.63        11.77         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       20.12        53.10        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
       14.14        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.22        15.09        12.59         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 
       12.62        51.32         8.81        57.76        16.96        27.02 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 
       65.00        17.65        23.18        92.65        99.98        48.95 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.93        17.72        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       14.20        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        33.67        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        3.42        56.91        10.65         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 
        5.75         9.80         2.10        23.57        14.20        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        6.84        26.79        11.84        15.32        13.61        33.90 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
       16.64         5.98         4.37         0.43        31.50         7.79 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        5.39       120.56         7.36        22.68        37.84         4.18 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       15.35        13.97         0.72        12.56         4.27        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       11.08        19.59        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       15.98        18.41         7.56        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 
        7.59        94.78         0.10        38.17        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        3.65        20.38        28.41        15.06        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1094 TCGA-12-1095 
      127.59         5.82         7.59        33.21        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
        9.11        14.53         3.98         4.14         2.24        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        1.35         5.39         2.04        19.30         0.79        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 
       50.53        19.10        53.19        13.28         3.91        26.07 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
       16.37        11.77        21.90         0.66        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
        5.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        7.92         2.33         7.30         5.26        14.93        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
        5.16        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                        1.08                         0.03 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                      211.17                       182.33 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                       16.77                        15.95 
[1] "1.1 - 211.2 (16.8)" "0.0 - 182.3 (15.9)"
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
                              cls
clus                             0   1
  AMP PEAK 18(11P13) MUTATED    30  29
  AMP PEAK 18(11P13) WILD-TYPE 543 483
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED     30   29
  AMP PEAK 18(11P13) WILD-TYPE  543  483
                        clus
vv                       AMP PEAK 18(11P13) MUTATED
  BRAIN                                          30
  CENTRAL NERVOUS SYSTEM                         29
                        clus
vv                       AMP PEAK 18(11P13) WILD-TYPE
  BRAIN                                           543
  CENTRAL NERVOUS SYSTEM                          483
[1] 2 2
[1] FALSE
D18V4, binary
                              cls
clus                             0   1
  AMP PEAK 18(11P13) MUTATED    28  31
  AMP PEAK 18(11P13) WILD-TYPE 425 601
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED     28   31
  AMP PEAK 18(11P13) WILD-TYPE  425  601
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  FEMALE                         28                          425
  MALE                           31                          601
[1] 2 2
[1] FALSE
D18V5, binary
                              cls
clus                             0   1
  AMP PEAK 18(11P13) MUTATED    17  41
  AMP PEAK 18(11P13) WILD-TYPE 241 729
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED     17   41
  AMP PEAK 18(11P13) WILD-TYPE  241  729
     clus
vv    AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  NO                          17                          241
  YES                         41                          729
[1] 2 2
[1] FALSE
D18V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 18(11P13) MUTATED             5                             2
  AMP PEAK 18(11P13) WILD-TYPE         189                            28
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 18(11P13) MUTATED                  7                17
  AMP PEAK 18(11P13) WILD-TYPE              122               172
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 18(11P13) MUTATED                     1
  AMP PEAK 18(11P13) WILD-TYPE                  17
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 18(11P13) MUTATED                                27
  AMP PEAK 18(11P13) WILD-TYPE                             498
D18V7, multiclass
                                 clus
vv                                AMP PEAK 18(11P13) MUTATED
  ASTROCYTOMA                                              5
  GLIOBLASTOMA MULTIFORME (GBM)                            2
  OLIGOASTROCYTOMA                                         7
  OLIGODENDROGLIOMA                                       17
  TREATED PRIMARY GBM                                      1
  UNTREATED PRIMARY (DE NOVO) GBM                         27
                                 clus
vv                                AMP PEAK 18(11P13) WILD-TYPE
  ASTROCYTOMA                                              189
  GLIOBLASTOMA MULTIFORME (GBM)                             28
  OLIGOASTROCYTOMA                                         122
  OLIGODENDROGLIOMA                                        172
  TREATED PRIMARY GBM                                       17
  UNTREATED PRIMARY (DE NOVO) GBM                          498
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 18(11P13) MUTATED                                  0     1
  AMP PEAK 18(11P13) WILD-TYPE                                1    20
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 18(11P13) MUTATED                           3    54
  AMP PEAK 18(11P13) WILD-TYPE                        68   905
D18V8, multiclass
                                  clus
vv                                 AMP PEAK 18(11P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     1
  BLACK OR AFRICAN AMERICAN                                 3
  WHITE                                                    54
                                  clus
vv                                 AMP PEAK 18(11P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      20
  BLACK OR AFRICAN AMERICAN                                  68
  WHITE                                                     905
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V9, binary
                              cls
clus                             0   1
  AMP PEAK 18(11P13) MUTATED     4  51
  AMP PEAK 18(11P13) WILD-TYPE  40 870
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED      4   51
  AMP PEAK 18(11P13) WILD-TYPE   40  870
                        clus
vv                       AMP PEAK 18(11P13) MUTATED
  HISPANIC OR LATINO                              4
  NOT HISPANIC OR LATINO                         51
                        clus
vv                       AMP PEAK 18(11P13) WILD-TYPE
  HISPANIC OR LATINO                               40
  NOT HISPANIC OR LATINO                          870
[1] 2 2
[1] FALSE

Clustering(19) Variable = AMP PEAK 19(11Q24.1) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 19(11Q24.1) MUTATED    71  40
  AMP PEAK 19(11Q24.1) WILD-TYPE 409 558
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                           111                            967 
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                            40                            558 
$`AMP PEAK 19(11Q24.1) MUTATED`
TCGA-DB-A4XC TCGA-HW-7490 TCGA-14-1453 TCGA-19-2623 TCGA-19-4065 TCGA-19-5960 
       46.72        45.60         1.15         7.53         7.04        14.96 
TCGA-27-1836 TCGA-27-2521 TCGA-CS-5396 TCGA-DB-5277 TCGA-DB-A4X9 TCGA-DB-A4XB 
       30.05        16.77        53.62        50.86        46.42        30.21 
TCGA-DB-A4XD TCGA-DB-A64L TCGA-DB-A64Q TCGA-DB-A64V TCGA-DB-A75L TCGA-DH-5144 
       39.78        24.20         5.98        29.23        11.24        24.59 
TCGA-DH-A66D TCGA-DH-A7UT TCGA-DU-5852 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       27.81        17.46         6.74         6.81       182.33        18.94 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6407 TCGA-DU-7015 
      211.17        52.11        46.06         1.22        94.52        90.77 
TCGA-DU-7018 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       30.67        18.94        25.91        23.31        41.98         2.76 
TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-E1-5304 TCGA-E1-5318 
       24.43        24.99        20.98        22.29        41.13        78.21 
TCGA-E1-A7Z3 TCGA-FG-5962 TCGA-FG-7634 TCGA-FG-8191 TCGA-FG-A60L TCGA-HT-7470 
       73.48        47.77        15.35        32.61        21.53        40.11 
TCGA-HT-7474 TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7607 TCGA-HT-7676 TCGA-HT-7684 
        3.75         5.03       122.47         3.16         0.16         6.05 
TCGA-HT-7688 TCGA-HT-7693 TCGA-HT-8109 TCGA-HT-A74H TCGA-HT-A74K TCGA-HW-8319 
       31.69        17.52         5.56         2.43        15.35        39.75 
TCGA-HW-8321 TCGA-P5-A5EV TCGA-P5-A72W TCGA-QH-A65S TCGA-QH-A65X TCGA-QH-A6CZ 
       42.54         0.23        10.42         2.53        15.85         9.17 
TCGA-QH-A6X9 TCGA-RY-A840 TCGA-RY-A845 TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TY 
        1.91        28.08        19.59        87.12        41.10        35.38 
TCGA-S9-A6WD TCGA-S9-A6WH TCGA-S9-A6WN TCGA-S9-A7IZ TCGA-S9-A7QY TCGA-S9-A7QZ 
       75.25        38.56        26.47        19.99        28.37        27.16 
TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RJ 
       31.59        20.48        24.92        28.08        24.16        40.41 
TCGA-TQ-A7RN TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CF 
       33.73        61.41        26.99        45.93        13.51        20.02 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85E TCGA-02-0080 TCGA-02-0106 TCGA-02-2466 
       45.80        46.88        20.81        89.72        11.67        16.80 
TCGA-06-0128 TCGA-06-0175 TCGA-06-0195 TCGA-06-0221 TCGA-06-1086 TCGA-06-1087 
       22.72         4.04         7.40        19.82         6.84         4.04 
TCGA-06-6389 TCGA-08-0386 TCGA-12-0818 TCGA-12-0826 TCGA-12-0827 TCGA-16-0850 
        7.79        18.02        91.76        27.78        38.76        16.37 
TCGA-19-1388 TCGA-26-5133 TCGA-28-5207 
       12.95        14.86        11.28 

$`AMP PEAK 19(11Q24.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        51.55        46.88        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       18.64        21.40        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
       26.79         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       15.35        21.73        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
       11.97         0.95         6.21        23.05        13.78         3.25 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 
        2.89        16.50        26.33        15.95         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.05        58.78        23.11         7.10        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.96         3.78         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        8.61        14.27         3.39        25.38         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       14.07        16.80        17.79        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       21.30        14.04        11.51        24.76        18.08        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 
        2.83         0.13         0.66         6.74         4.77        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
        0.20        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       36.20         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        36.36        60.10        40.18         0.26        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA 
       72.92        91.13        44.52        36.56        78.28        18.84 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P 
       37.45        33.57        72.95        31.63        25.48        30.12 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       31.40        27.45        27.81        14.40        18.51        12.10 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU 
       30.21        17.19        17.19        54.25        23.21        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 
       18.61        18.02        14.56        17.46        13.38         8.45 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 
       17.49        15.16        22.42        49.02        75.16        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      154.36        14.99       105.21         6.54         8.84       117.40 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7302 
       26.30        10.36         7.96        94.32        44.02        60.30 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A76K 
       26.17        33.96        25.55        21.57        95.11        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       26.76        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 
       37.38         7.50        44.42        38.89         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 
       67.46        79.99        57.93       134.27        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       16.18        21.30        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       32.45        36.82       146.14        13.08       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
       39.48         0.23         0.20        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 
       18.77        14.93        42.54        41.33        18.44        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       16.01        14.96        22.52        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       18.71        23.70        14.76        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 
       28.54        10.78        36.66        48.69         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        0.10         6.67        11.54         0.13         0.03        16.54 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 
       95.93       106.95       172.77         4.01        29.85        23.18 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
        4.57        17.29        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7686 
        0.23        14.27        16.24         0.76        44.68        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7694 
        0.10        14.96         0.10         0.10         2.96         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 
       12.23         6.25         0.10         0.46         2.50        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
        0.23        29.59        34.19        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74J TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
       17.52        17.65        10.52        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8320 
       45.44        41.49        68.32        69.27        35.44        40.01 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       24.92        31.63        12.76        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40        14.40         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        9.44         5.88         7.96         7.59         1.28         0.23 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       15.16        12.62        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       13.61        12.23        13.41        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       16.73        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 
       94.03        32.65        30.87         5.46         9.90         2.07 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U0 
       30.67        62.17        18.77        40.93        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL 
        5.85       123.65       135.22        85.55        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       19.86        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       26.93        23.51        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       15.06        18.54       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       98.63        18.71        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L 
       65.39        16.18        59.05        40.64        30.44        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RM 
       21.37        19.69        15.98         2.04        44.09        36.69 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A8XE 
       31.20        30.05        26.14        25.87        33.93        31.36 
TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       43.20         0.10         7.89        39.16        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85D TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       39.88        43.40        37.71         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
       18.35        23.18        10.59        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.09        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        27.25        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       65.00        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.73        10.62         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 
       11.34         9.27        16.21         3.35        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        4.67         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
       11.84         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       72.36         4.70         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       26.76        23.93        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
       31.50         5.39       120.56         7.36        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        4.18       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        9.80        29.23        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       14.93        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       42.15        11.08        19.59        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        4.80         7.27        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.93        14.86        24.79        18.48        10.62        23.51 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 
       53.19        13.28         3.91        26.07        11.77        21.90 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 
        0.66        10.75         9.07         5.95         4.64        31.33 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 
        5.49         1.58         7.92         2.33         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       14.93        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        12.76         5.42 
TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        7.36        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                          0.16                           0.03 
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                        211.17                         172.77 
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                         24.20                          15.32 
[1] "0.2 - 211.2 (24.2)" "0.0 - 172.8 (15.3)"
[1] "hr=" "2.2"
D19V2, continuous
D19V3, binary
                                cls
clus                               0   1
  AMP PEAK 19(11Q24.1) MUTATED    25  87
  AMP PEAK 19(11Q24.1) WILD-TYPE 548 425
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q24.1) MUTATED     25   87
  AMP PEAK 19(11Q24.1) WILD-TYPE  548  425
                        clus
vv                       AMP PEAK 19(11Q24.1) MUTATED
  BRAIN                                            25
  CENTRAL NERVOUS SYSTEM                           87
                        clus
vv                       AMP PEAK 19(11Q24.1) WILD-TYPE
  BRAIN                                             548
  CENTRAL NERVOUS SYSTEM                            425
[1] 2 2
[1] FALSE
D19V4, binary
                                cls
clus                               0   1
  AMP PEAK 19(11Q24.1) MUTATED    48  64
  AMP PEAK 19(11Q24.1) WILD-TYPE 405 568
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q24.1) MUTATED     48   64
  AMP PEAK 19(11Q24.1) WILD-TYPE  405  568
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  FEMALE                           48                            405
  MALE                             64                            568
[1] 2 2
[1] FALSE
D19V5, binary
                                cls
clus                               0   1
  AMP PEAK 19(11Q24.1) MUTATED    34  76
  AMP PEAK 19(11Q24.1) WILD-TYPE 224 694
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q24.1) MUTATED     34   76
  AMP PEAK 19(11Q24.1) WILD-TYPE  224  694
     clus
vv    AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  NO                            34                            224
  YES                           76                            694
[1] 2 2
[1] FALSE
D19V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 19(11Q24.1) MUTATED            33                             0
  AMP PEAK 19(11Q24.1) WILD-TYPE         161                            30
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 19(11Q24.1) MUTATED                 18                36
  AMP PEAK 19(11Q24.1) WILD-TYPE              111               153
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 19(11Q24.1) MUTATED                     1
  AMP PEAK 19(11Q24.1) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 19(11Q24.1) MUTATED                                24
  AMP PEAK 19(11Q24.1) WILD-TYPE                             501
D19V7, multiclass
                                 clus
vv                                AMP PEAK 19(11Q24.1) MUTATED
  ASTROCYTOMA                                               33
  GLIOBLASTOMA MULTIFORME (GBM)                              0
  OLIGOASTROCYTOMA                                          18
  OLIGODENDROGLIOMA                                         36
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           24
                                 clus
vv                                AMP PEAK 19(11Q24.1) WILD-TYPE
  ASTROCYTOMA                                                161
  GLIOBLASTOMA MULTIFORME (GBM)                               30
  OLIGOASTROCYTOMA                                           111
  OLIGODENDROGLIOMA                                          153
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            501
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 19(11Q24.1) MUTATED                                  0     0
  AMP PEAK 19(11Q24.1) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 19(11Q24.1) MUTATED                           5   104
  AMP PEAK 19(11Q24.1) WILD-TYPE                        66   855
D19V8, multiclass
                                  clus
vv                                 AMP PEAK 19(11Q24.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   5
  WHITE                                                     104
                                  clus
vv                                 AMP PEAK 19(11Q24.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    66
  WHITE                                                       855
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V9, binary
                                cls
clus                               0   1
  AMP PEAK 19(11Q24.1) MUTATED     6  95
  AMP PEAK 19(11Q24.1) WILD-TYPE  38 826
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q24.1) MUTATED      6   95
  AMP PEAK 19(11Q24.1) WILD-TYPE   38  826
                        clus
vv                       AMP PEAK 19(11Q24.1) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                           95
                        clus
vv                       AMP PEAK 19(11Q24.1) WILD-TYPE
  HISPANIC OR LATINO                                 38
  NOT HISPANIC OR LATINO                            826
[1] 2 2
[1] FALSE

Clustering(20) Variable = AMP PEAK 20(12P13.32) MUTATION ANALYSIS
D20V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 20(12P13.32) MUTATED    57  94
  AMP PEAK 20(12P13.32) WILD-TYPE 423 504
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                            151                             927 
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                             94                             504 
$`AMP PEAK 20(12P13.32) MUTATED`
TCGA-DB-A4XC TCGA-06-5415 TCGA-06-5856 TCGA-06-5859 TCGA-06-6699 TCGA-06-A7TK 
       46.72         8.55         3.75         4.57         1.55        14.60 
TCGA-06-A7TL TCGA-12-1602 TCGA-12-3653 TCGA-14-0740 TCGA-14-0790 TCGA-14-1396 
       17.72         6.77        14.53        11.97        13.78         1.12 
TCGA-14-1453 TCGA-14-1458 TCGA-14-1821 TCGA-14-1823 TCGA-14-2554 TCGA-16-1460 
        1.15         6.67        17.79        17.85        17.49         6.41 
TCGA-19-1786 TCGA-19-1787 TCGA-19-5954 TCGA-26-1438 TCGA-26-5132 TCGA-27-1838 
        7.17        12.66        12.10        10.03         9.40        11.51 
TCGA-28-1756 TCGA-28-2506 TCGA-32-1979 TCGA-32-1991 TCGA-32-2615 TCGA-32-4208 
        2.83         6.74        19.50        16.93        15.95        21.14 
TCGA-32-4210 TCGA-32-5222 TCGA-74-6577 TCGA-76-4928 TCGA-CS-4943 TCGA-DB-5273 
        3.72        19.23         4.34         3.09        36.36        81.96 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A4XE TCGA-DB-A64P TCGA-DH-A669 
       47.93        50.86        78.28        37.45        30.12        30.21 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-6408 
       49.02        75.16        65.75         1.22        11.64       114.08 
TCGA-DU-7007 TCGA-DU-7299 TCGA-DU-7304 TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TS 
       62.96        44.02        23.31        19.13        33.27        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TI 
       24.43        26.17        33.96       139.04        84.33        38.89 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YQ TCGA-E1-A7YU 
       67.46        41.13        93.21         3.65        51.88         0.76 
TCGA-E1-A7YW TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-8182 
       36.82        36.82        42.54        41.33        15.35        13.68 
TCGA-FG-8185 TCGA-FG-8191 TCGA-FG-A6J3 TCGA-FG-A711 TCGA-HT-7469 TCGA-HT-7473 
       14.24        32.61        22.26        48.69        11.54        16.54 
TCGA-HT-7478 TCGA-HT-7604 TCGA-HT-7686 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7884 
        6.38       122.47        42.74        23.61         3.68        11.28 
TCGA-HT-8018 TCGA-HT-A614 TCGA-HW-A5KM TCGA-QH-A6CV TCGA-S9-A6UA TCGA-S9-A6WO 
       37.87         2.70        20.71        14.53         5.85        18.61 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R7 TCGA-TM-A84I TCGA-TQ-A7RK 
       19.99        20.02        18.54        98.63        28.08        44.09 
TCGA-TQ-A7RR TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85B TCGA-WY-A85E TCGA-02-0001 
       25.87        43.96        39.88        45.80        20.81        11.77 
TCGA-02-0024 TCGA-02-0051 TCGA-02-0054 TCGA-02-0070 TCGA-02-0074 TCGA-02-0084 
       53.10        15.09         6.54        25.05        10.19        12.62 
TCGA-02-0087 TCGA-02-0266 TCGA-02-0271 TCGA-02-0324 TCGA-02-2466 TCGA-06-0129 
       57.76        17.72        14.47         7.73        16.80        33.67 
TCGA-06-0146 TCGA-06-0151 TCGA-06-0157 TCGA-06-0162 TCGA-06-0164 TCGA-06-0177 
       20.09        46.59         3.19         3.42        56.91         4.18 
TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0192 TCGA-06-0216 TCGA-06-0221 
       69.90        27.22        44.58        38.96        24.16        19.82 
TCGA-06-0238 TCGA-06-0409 TCGA-06-0649 TCGA-06-0743 TCGA-06-1086 TCGA-06-1087 
       13.32        72.36         2.10        26.40         6.84         4.04 
TCGA-06-2561 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 TCGA-08-0352 
       17.65         7.79         7.36        37.84         4.18         1.28 
TCGA-08-0392 TCGA-08-0516 TCGA-12-0691 TCGA-12-0776 TCGA-12-0778 TCGA-12-0820 
        0.72        19.59        12.13         9.73        14.93        18.48 
TCGA-12-1090 TCGA-12-1098 TCGA-15-1449 TCGA-16-0850 TCGA-26-1442 TCGA-28-5207 
        7.59         3.98        13.28        16.37        31.33        11.28 
TCGA-28-5218 
        5.16 

$`AMP PEAK 20(12P13.32) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        51.55        46.88        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        6.71         2.73         6.15         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        4.77         4.77         4.96        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        2.56        15.35        21.73        15.65        25.68        14.73 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       34.92        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        6.21        23.05         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       15.95         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 
        7.10        30.18         0.92        40.96        12.43         0.99 
TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-3477 
        1.97         7.63         5.88         7.17         7.96         3.78 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.42        17.59        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
        9.14        21.24        13.97         8.61        14.27         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
       25.38         3.65         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
        1.78        22.49        14.07        16.80        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5135 
       28.54        13.87         9.73         7.13         9.37         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
       18.97        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       40.54        21.30        30.05        14.04        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       16.77        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-32-1970 
        1.22         1.55         0.13         0.66         4.77        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 
       21.07         0.49         0.10        15.85         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 
       12.69        14.86        12.23        20.78        15.02         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 
       22.78        25.18        12.59        19.86        10.85         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
        0.20        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        4.54         3.65         9.17         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        5.03        23.90        34.45        18.64        36.20         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 
        6.28        20.55       117.50         7.69        43.89        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.26        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       26.76        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
      122.73        75.25        72.92        91.13        44.52        36.56 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG 
       46.42        18.84        30.21        39.78        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       31.63        24.20        25.48         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       24.59        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 
       17.49        15.16       211.17        52.11        22.42        46.06 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04       133.74        19.89        16.83        94.52 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        7.96         2.40        11.47       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7301 
       26.30        10.36         7.96        94.32        18.94        25.91 
TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       60.30        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TR 
       20.68        21.40        16.96        15.48        14.17        29.85 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       24.99        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC 
       11.41        26.76        21.30        17.98        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5305 TCGA-E1-5307 
        7.50        44.42         0.56        50.14        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS 
       19.46        12.43        16.18        21.30        75.02        15.32 
TCGA-E1-A7YV TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       32.45       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       18.77        14.93        18.44        17.88        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MT 
       20.09        28.34        16.01        14.96        22.52        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A87Q 
       15.02        16.44        28.54        10.78        36.66         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10         6.67        40.11         0.13         0.03 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 
        3.75        17.42         6.54        24.26        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
       23.18         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
        0.76        44.68         6.05         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
       37.15         0.33         0.13         5.33        35.47         3.72 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
       27.35         0.10         5.33        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       31.63        12.76        28.87        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.96         7.59         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        13.61        12.23        13.41         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP 
       38.56        84.99        31.10        19.86        26.47        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 
       14.07        36.13         7.92        26.93        23.51         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
        2.04        20.68        15.06        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       10.39        99.06        30.05        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RM 
       21.37        19.69        15.98         2.04        40.41        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV 
       33.73        31.20        30.05        26.14        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A85A TCGA-WY-A85C 
       23.21         8.05        51.06        13.32        43.40        46.88 
TCGA-WY-A85D TCGA-06-0209 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
       37.71         7.63         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       20.12        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       14.73         3.22        12.59         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 
        9.57         6.02        19.73        26.43        28.70         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 
       20.84        27.25        89.72        22.72        51.32         8.81 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.18        92.65        99.98        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
       12.23         9.90        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       47.11        11.34         9.27        16.21         3.35        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 
       47.61         6.94         3.98        22.72        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
        2.20        11.74         2.33        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0158 TCGA-06-0159 
       19.46        12.33        13.94        10.45        10.82         9.44 
TCGA-06-0160 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       11.80        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22         4.04        91.00        88.14        20.25 
TCGA-06-0182 TCGA-06-0185 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 
        3.65        73.84        15.42        10.42         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 
        0.53        15.02         0.72        13.64        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26         4.70         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
       35.11        12.62         5.75         5.75         9.80        23.57 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       26.76        23.93        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08        12.49         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        5.39       120.56        22.68       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 
       25.71        12.16         9.80        29.23        65.33         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
       12.23        14.93        18.02        15.35        13.97        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        4.27        42.15        11.08        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        4.80         7.27        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       38.17        25.97        26.66         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 
       15.06        53.85        43.23         7.63        14.86        91.76 
TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       24.79        10.62        23.51        27.78        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
       20.58       127.59         5.82        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
       15.85         9.11        14.53         4.14         2.24        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 
        1.35         5.39         2.04        28.93        19.30         0.79 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 
       13.78        50.53        19.10        53.19         3.91        26.07 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       11.77        21.90         0.66        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 
       12.95         4.64        14.86         5.49         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        2.33         7.30         5.26        14.93        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       11.77        31.27        23.44        11.01        13.64        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       12.76         5.42         7.36        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                           0.72                            0.03 
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                         139.04                          211.17 
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                          17.85                           15.72 
[1] "0.7 - 139.0 (17.9)" "0.0 - 211.2 (15.7)"
[1] "hr=" "1"  
D20V2, continuous
D20V3, binary
                                 cls
clus                                0   1
  AMP PEAK 20(12P13.32) MUTATED    84  68
  AMP PEAK 20(12P13.32) WILD-TYPE 489 444
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(12P13.32) MUTATED     84   68
  AMP PEAK 20(12P13.32) WILD-TYPE  489  444
                        clus
vv                       AMP PEAK 20(12P13.32) MUTATED
  BRAIN                                             84
  CENTRAL NERVOUS SYSTEM                            68
                        clus
vv                       AMP PEAK 20(12P13.32) WILD-TYPE
  BRAIN                                              489
  CENTRAL NERVOUS SYSTEM                             444
[1] 2 2
[1] FALSE
D20V4, binary
                                 cls
clus                                0   1
  AMP PEAK 20(12P13.32) MUTATED    57  95
  AMP PEAK 20(12P13.32) WILD-TYPE 396 537
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(12P13.32) MUTATED     57   95
  AMP PEAK 20(12P13.32) WILD-TYPE  396  537
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  FEMALE                            57                             396
  MALE                              95                             537
[1] 2 2
[1] FALSE
D20V5, binary
                                 cls
clus                                0   1
  AMP PEAK 20(12P13.32) MUTATED    24 122
  AMP PEAK 20(12P13.32) WILD-TYPE 234 648
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(12P13.32) MUTATED     24  122
  AMP PEAK 20(12P13.32) WILD-TYPE  234  648
     clus
vv    AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  NO                             24                             234
  YES                           122                             648
[1] 2 2
[1] FALSE
D20V6, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 20(12P13.32) MUTATED            30                             3
  AMP PEAK 20(12P13.32) WILD-TYPE         164                            27
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 20(12P13.32) MUTATED                 21                17
  AMP PEAK 20(12P13.32) WILD-TYPE              108               172
                                 vv
clus                              TREATED PRIMARY GBM
  AMP PEAK 20(12P13.32) MUTATED                     2
  AMP PEAK 20(12P13.32) WILD-TYPE                  16
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 20(12P13.32) MUTATED                                79
  AMP PEAK 20(12P13.32) WILD-TYPE                             446
D20V7, multiclass
                                 clus
vv                                AMP PEAK 20(12P13.32) MUTATED
  ASTROCYTOMA                                                30
  GLIOBLASTOMA MULTIFORME (GBM)                               3
  OLIGOASTROCYTOMA                                           21
  OLIGODENDROGLIOMA                                          17
  TREATED PRIMARY GBM                                         2
  UNTREATED PRIMARY (DE NOVO) GBM                            79
                                 clus
vv                                AMP PEAK 20(12P13.32) WILD-TYPE
  ASTROCYTOMA                                                 164
  GLIOBLASTOMA MULTIFORME (GBM)                                27
  OLIGOASTROCYTOMA                                            108
  OLIGODENDROGLIOMA                                           172
  TREATED PRIMARY GBM                                          16
  UNTREATED PRIMARY (DE NOVO) GBM                             446
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 20(12P13.32) MUTATED                                  0     4
  AMP PEAK 20(12P13.32) WILD-TYPE                                1    17
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 20(12P13.32) MUTATED                           9   135
  AMP PEAK 20(12P13.32) WILD-TYPE                        62   824
D20V8, multiclass
                                  clus
vv                                 AMP PEAK 20(12P13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        4
  BLACK OR AFRICAN AMERICAN                                    9
  WHITE                                                      135
                                  clus
vv                                 AMP PEAK 20(12P13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         17
  BLACK OR AFRICAN AMERICAN                                     62
  WHITE                                                        824
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V9, binary
                                 cls
clus                                0   1
  AMP PEAK 20(12P13.32) MUTATED     5 127
  AMP PEAK 20(12P13.32) WILD-TYPE  39 794
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(12P13.32) MUTATED      5  127
  AMP PEAK 20(12P13.32) WILD-TYPE   39  794
                        clus
vv                       AMP PEAK 20(12P13.32) MUTATED
  HISPANIC OR LATINO                                 5
  NOT HISPANIC OR LATINO                           127
                        clus
vv                       AMP PEAK 20(12P13.32) WILD-TYPE
  HISPANIC OR LATINO                                  39
  NOT HISPANIC OR LATINO                             794
[1] 2 2
[1] FALSE

Clustering(21) Variable = AMP PEAK 21(12Q14.1) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 21(12Q14.1) MUTATED    36 133
  AMP PEAK 21(12Q14.1) WILD-TYPE 444 465
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                           169                            909 
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                           133                            465 
$`AMP PEAK 21(12Q14.1) MUTATED`
TCGA-06-6391 TCGA-CS-6665 TCGA-06-5415 TCGA-06-5856 TCGA-06-5859 TCGA-06-6695 
        1.48        51.55         8.55         3.75         4.57         8.32 
TCGA-06-A7TK TCGA-12-1598 TCGA-12-1602 TCGA-12-3653 TCGA-14-0790 TCGA-14-1396 
       14.60        15.65         6.77        14.53        13.78         1.12 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1821 TCGA-14-1823 TCGA-14-2554 TCGA-16-0848 
       58.78        23.11        17.79        17.85        17.49        17.59 
TCGA-16-1056 TCGA-19-0960 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2624 
       14.01         8.61         7.17        12.66         0.13         0.16 
TCGA-19-5950 TCGA-19-5960 TCGA-26-1438 TCGA-26-5135 TCGA-27-1833 TCGA-27-1835 
       17.19        14.96        10.03         8.88        24.23        21.30 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2526 TCGA-28-1746 TCGA-28-2506 TCGA-32-1979 
       11.51        24.76         2.86         0.20         6.74        19.50 
TCGA-32-2615 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
       15.95        21.14        12.59        19.23         0.85         8.94 
TCGA-41-4097 TCGA-41-5651 TCGA-74-6577 TCGA-76-4928 TCGA-76-4935 TCGA-76-6193 
        0.20        15.12         4.34         3.09        36.85         2.70 
TCGA-RR-A6KA TCGA-CS-4941 TCGA-DH-A669 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-7010 
        6.28         7.69        30.21         1.22        11.64        14.99 
TCGA-DU-7013 TCGA-DU-7298 TCGA-DU-8165 TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A7TA 
        8.84        18.94        19.13        24.43        33.96        84.33 
TCGA-E1-5305 TCGA-E1-5318 TCGA-E1-A7YD TCGA-E1-A7YL TCGA-E1-A7YQ TCGA-E1-A7YV 
       79.99        78.21        14.30        16.18        51.88        32.45 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-HT-8563 TCGA-HT-A5RC 
       15.35        17.88        22.26        10.78        28.27         5.33 
TCGA-HT-A614 TCGA-HT-A61B TCGA-IK-7675 TCGA-P5-A5EZ TCGA-P5-A72U TCGA-QH-A6CV 
        2.70        17.52        19.00         2.30         0.23        14.53 
TCGA-S9-A6UA TCGA-S9-A7IZ TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I 
        5.85        19.99        10.39        54.77        24.92        28.08 
TCGA-VW-A8FI TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0024 
        8.05         7.63        11.77         4.73        18.35        53.10 
TCGA-02-0046 TCGA-02-0051 TCGA-02-0054 TCGA-02-0060 TCGA-02-0070 TCGA-02-0074 
        6.87        15.09         6.54         6.02        25.05        10.19 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0107 TCGA-02-0266 TCGA-02-0271 TCGA-02-0324 
        3.48        27.02        17.65        17.72        14.47         7.73 
TCGA-02-0332 TCGA-02-2485 TCGA-02-2486 TCGA-06-0128 TCGA-06-0129 TCGA-06-0138 
       25.71        15.45        20.32        22.72        33.67        24.23 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0157 TCGA-06-0162 TCGA-06-0164 
        2.33        46.59        12.33         3.19         3.42        56.91 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 TCGA-06-0182 TCGA-06-0188 TCGA-06-0192 
        4.47         3.22         4.18         3.65        44.58        38.96 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0402 
       15.02        24.16         0.72        19.82        13.32         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-0875 
       72.36         9.57         2.10        14.20        26.40        43.46 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
        6.84         4.04        33.90        12.49         4.93        17.65 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6390 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 
        0.43        31.50         5.39         7.36        37.84         4.18 
TCGA-08-0352 TCGA-08-0380 TCGA-08-0518 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
        1.28        14.93        19.33        14.73        12.99        10.45 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0691 TCGA-12-0776 TCGA-12-0778 TCGA-12-0820 
        0.10        25.97        12.13         9.73        14.93        18.48 
TCGA-12-0826 TCGA-12-1089 TCGA-12-1090 TCGA-12-1098 TCGA-15-1444 TCGA-15-1449 
       27.78         5.82         7.59         3.98        50.53        13.28 
TCGA-16-0846 TCGA-16-0850 TCGA-19-0957 TCGA-28-5207 TCGA-28-5209 TCGA-28-5214 
        3.91        16.37        21.90        11.28        14.53        23.44 
TCGA-28-5218 
        5.16 

$`AMP PEAK 21(12Q14.1) WILD-TYPE`
TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        3.98        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 
        3.55         8.35         4.54         8.81         8.98         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        2.73         6.15         5.23        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96        26.79         1.87         3.12         2.56 
TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
       17.72        15.35        21.73        25.68        14.73        59.77 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       44.02        26.93        15.22        10.95        12.69        34.92 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       14.93         3.22         2.04        15.12        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        6.21        23.05         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 
       15.95         1.38         3.75        32.05         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-3477 
        1.97         7.63         5.88         7.17         7.96         3.78 
TCGA-14-4157 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 
        3.42        29.03         4.57        10.29         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 
       13.97         6.41        14.27         3.39        25.38         3.65 
TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 
        3.25         9.67         4.87         1.08         7.53         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 TCGA-19-5952 
       24.23         7.00         7.04         6.64         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       17.79        28.54        13.87         9.73         7.13         9.37 
TCGA-26-5132 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        9.40        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       40.54        30.05        14.04        18.08        16.77        16.08 
TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
        7.59        14.40        15.78         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        0.66         4.77        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       15.85         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02         8.84        22.78        25.18 
TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 
        3.72        19.86        10.85        13.35         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-6191 TCGA-76-6192 
        4.54         3.65         9.17         2.53        16.70         3.29 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 
       34.45        18.64        36.20         5.92        20.55       117.50 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        36.36        60.10        40.18         0.26        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       53.62         6.38        17.69        26.76        37.38        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
       78.28        46.42        18.84        30.21        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F 
       19.96        63.88        46.06        24.59        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      154.36       105.21         6.54       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 
       26.30        10.36         7.96        94.32        44.02        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 
       33.27        29.85        31.69        26.17        24.99        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30        17.98       139.04        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
       44.42        38.89         0.56        50.14        67.46        41.13 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH 
       57.93       134.27        95.57       130.78        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS 
        3.65        19.46        12.43        21.30        75.02        15.32 
TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
        0.76        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       18.44        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       15.02        16.44        28.54        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       29.59        34.19        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A615 TCGA-HT-A616 
       20.22         0.07        27.35         0.10        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.14        16.83        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 
       31.63        12.76        28.87        20.71        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         7.99         2.37         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.96         7.59         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J1 
       36.13         7.92        26.93        23.51        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
      169.84        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       20.48        48.33        49.32        34.78        65.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0007 
       43.40        45.80        46.88        37.71        20.81        23.18 
TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 
       10.59        35.41        20.71        82.59        20.61        87.06 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       77.65        20.12        42.74        24.59        12.16        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
        2.83        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       14.73         3.22        12.59         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 TCGA-02-0075 
        9.57        19.73        26.43        28.70         5.49        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.25        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0104 TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 
       57.76        16.96        65.00        11.67        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 
       99.98        15.65        48.95        16.54        16.93        10.75 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
       10.62         7.33        15.91         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-06-0119 
       16.21         3.35        16.80        12.92        15.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0130 
        6.15        20.38        47.61         6.94         3.98        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        14.30        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
        2.20        11.74        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0154 TCGA-06-0155 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       19.46        13.94        10.45        10.82         9.44        11.80 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0175 
       10.65         5.85        19.66         3.29        13.12         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       91.00        88.14        20.25        69.90        73.84        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0237 
        7.66         8.42         7.40        11.84         0.53        13.64 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0410 TCGA-06-0413 
       20.42        48.69        10.82         9.01         4.70         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
       35.11        12.62         5.75         5.75         9.80        23.57 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 
       46.88         7.86         2.70         2.70         0.92        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2562 
       26.79        11.84        15.32        13.61         1.08        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-6389 
       30.64         5.95        16.64         5.98         4.37         7.79 
TCGA-06-6693 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
      120.56        22.68       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 
       12.16         9.80        29.23        65.33         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       18.02        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 
       42.15        11.08        19.59        58.68        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0619 TCGA-12-0654 
        7.27        15.98        18.41         7.56        34.92         7.59 
TCGA-12-0656 TCGA-12-0662 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       94.78        38.17        26.66         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 
       15.06        53.85        43.23         7.63        14.86        91.76 
TCGA-12-0819 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       24.79        10.62        23.51        38.76         8.94        20.58 
TCGA-12-1088 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
      127.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 
       14.53         4.14         2.24        11.24         1.35         5.39 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 
        2.04        28.93        19.30         0.79        13.78        19.10 
TCGA-15-1447 TCGA-16-0849 TCGA-19-0955 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
       53.19        26.07        11.77         0.66        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        5.95        12.95         4.64        31.33        14.86         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        1.58         7.92         2.33         7.30         5.26        14.93 
TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       17.88        11.77        31.27        11.01        13.64        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       12.76         5.42         7.36        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                         84.33                         211.17 
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                          14.3                           16.6 
[1] "0.1 - 84.3 (14.3)"  "0.0 - 211.2 (16.6)"
[1] "hr=" "2.1"
D21V2, continuous
D21V3, binary
                                cls
clus                               0   1
  AMP PEAK 21(12Q14.1) MUTATED   134  37
  AMP PEAK 21(12Q14.1) WILD-TYPE 439 475
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(12Q14.1) MUTATED    134   37
  AMP PEAK 21(12Q14.1) WILD-TYPE  439  475
                        clus
vv                       AMP PEAK 21(12Q14.1) MUTATED
  BRAIN                                           134
  CENTRAL NERVOUS SYSTEM                           37
                        clus
vv                       AMP PEAK 21(12Q14.1) WILD-TYPE
  BRAIN                                             439
  CENTRAL NERVOUS SYSTEM                            475
[1] 2 2
[1] FALSE
D21V4, binary
                                cls
clus                               0   1
  AMP PEAK 21(12Q14.1) MUTATED    74  97
  AMP PEAK 21(12Q14.1) WILD-TYPE 379 535
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(12Q14.1) MUTATED     74   97
  AMP PEAK 21(12Q14.1) WILD-TYPE  379  535
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  FEMALE                           74                            379
  MALE                             97                            535
[1] 2 2
[1] FALSE
D21V5, binary
                                cls
clus                               0   1
  AMP PEAK 21(12Q14.1) MUTATED    28 136
  AMP PEAK 21(12Q14.1) WILD-TYPE 230 634
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(12Q14.1) MUTATED     28  136
  AMP PEAK 21(12Q14.1) WILD-TYPE  230  634
     clus
vv    AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  NO                            28                            230
  YES                          136                            634
[1] 2 2
[1] FALSE
D21V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 21(12Q14.1) MUTATED            22                             5
  AMP PEAK 21(12Q14.1) WILD-TYPE         172                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 21(12Q14.1) MUTATED                  5                10
  AMP PEAK 21(12Q14.1) WILD-TYPE              124               179
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 21(12Q14.1) MUTATED                     3
  AMP PEAK 21(12Q14.1) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 21(12Q14.1) MUTATED                               126
  AMP PEAK 21(12Q14.1) WILD-TYPE                             399
D21V7, multiclass
                                 clus
vv                                AMP PEAK 21(12Q14.1) MUTATED
  ASTROCYTOMA                                               22
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                           5
  OLIGODENDROGLIOMA                                         10
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                          126
                                 clus
vv                                AMP PEAK 21(12Q14.1) WILD-TYPE
  ASTROCYTOMA                                                172
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                           124
  OLIGODENDROGLIOMA                                          179
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            399
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 21(12Q14.1) MUTATED                                  0     5
  AMP PEAK 21(12Q14.1) WILD-TYPE                                1    16
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 21(12Q14.1) MUTATED                          15   145
  AMP PEAK 21(12Q14.1) WILD-TYPE                        56   814
D21V8, multiclass
                                  clus
vv                                 AMP PEAK 21(12Q14.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       5
  BLACK OR AFRICAN AMERICAN                                  15
  WHITE                                                     145
                                  clus
vv                                 AMP PEAK 21(12Q14.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        16
  BLACK OR AFRICAN AMERICAN                                    56
  WHITE                                                       814
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V9, binary
                                cls
clus                               0   1
  AMP PEAK 21(12Q14.1) MUTATED     2 150
  AMP PEAK 21(12Q14.1) WILD-TYPE  42 771
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(12Q14.1) MUTATED      2  150
  AMP PEAK 21(12Q14.1) WILD-TYPE   42  771
                        clus
vv                       AMP PEAK 21(12Q14.1) MUTATED
  HISPANIC OR LATINO                                2
  NOT HISPANIC OR LATINO                          150
                        clus
vv                       AMP PEAK 21(12Q14.1) WILD-TYPE
  HISPANIC OR LATINO                                 42
  NOT HISPANIC OR LATINO                            771
[1] 2 2
[1] FALSE

Clustering(22) Variable = AMP PEAK 22(12Q15) MUTATION ANALYSIS
D22V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 22(12Q15) MUTATED    21  89
  AMP PEAK 22(12Q15) WILD-TYPE 459 509
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                         110                          968 
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                          89                          509 
$`AMP PEAK 22(12Q15) MUTATED`
TCGA-06-6391 TCGA-06-5415 TCGA-06-5856 TCGA-06-6695 TCGA-06-6700 TCGA-06-A7TK 
        1.48         8.55         3.75         8.32         4.77        14.60 
TCGA-12-1602 TCGA-12-3653 TCGA-14-0790 TCGA-14-1396 TCGA-14-1450 TCGA-14-1451 
        6.77        14.53        13.78         1.12        58.78        23.11 
TCGA-14-1821 TCGA-14-1823 TCGA-14-2554 TCGA-19-1786 TCGA-19-1787 TCGA-19-2624 
       17.79        17.85        17.49         7.17        12.66         0.16 
TCGA-26-1438 TCGA-26-5132 TCGA-26-5135 TCGA-27-2518 TCGA-27-2526 TCGA-28-2506 
       10.03         9.40         8.88        24.76         2.86         6.74 
TCGA-32-1978 TCGA-32-1979 TCGA-32-2615 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 
       15.85        19.50        15.95        21.14        12.59        19.23 
TCGA-41-2571 TCGA-74-6577 TCGA-74-6584 TCGA-CS-4941 TCGA-DH-A669 TCGA-DU-6400 
        0.85         4.34         7.50         7.69        30.21         1.22 
TCGA-DU-7298 TCGA-DU-8165 TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A7TA TCGA-E1-5305 
       18.94        19.13        24.43        33.96        84.33        79.99 
TCGA-E1-A7YQ TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-A4MW TCGA-P5-A72U TCGA-QH-A6CV 
       51.88        15.35        17.88        18.38         0.23        14.53 
TCGA-S9-A6UA TCGA-S9-A7IZ TCGA-TM-A84B TCGA-06-0209 TCGA-02-0001 TCGA-02-0006 
        5.85        19.99        24.92         7.63        11.77        18.35 
TCGA-02-0024 TCGA-02-0039 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0060 
       53.10        10.52        15.09        12.59         6.54         6.02 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0099 TCGA-02-0102 TCGA-02-0271 
       25.05         5.49        10.19         3.48        27.02        14.47 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0330 TCGA-02-0337 TCGA-06-0138 TCGA-06-0140 
        9.90         7.73        15.91        25.12        24.23         0.20 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0162 TCGA-06-0164 TCGA-06-0173 TCGA-06-0174 
       46.59        12.33         3.42        56.91         4.47         3.22 
TCGA-06-0177 TCGA-06-0182 TCGA-06-0187 TCGA-06-0188 TCGA-06-0192 TCGA-06-0214 
        4.18         3.65        27.22        44.58        38.96        15.02 
TCGA-06-0216 TCGA-06-0409 TCGA-06-0648 TCGA-06-0686 TCGA-06-0743 TCGA-06-0939 
       24.16        72.36         9.80        14.20        26.40        26.76 
TCGA-06-1086 TCGA-06-1087 TCGA-06-2561 TCGA-06-2569 TCGA-06-6390 TCGA-08-0246 
        6.84         4.04        17.65         0.43         5.39         4.18 
TCGA-12-0616 TCGA-12-0670 TCGA-12-0691 TCGA-12-0772 TCGA-12-0778 TCGA-12-0826 
       14.73        25.97        12.13        53.85        14.93        27.78 
TCGA-12-1090 TCGA-12-1098 TCGA-15-1449 TCGA-19-0957 TCGA-28-5207 TCGA-28-5214 
        7.59         3.98        13.28        21.90        11.28        23.44 
TCGA-28-5218 TCGA-76-6660 
        5.16         3.75 

$`AMP PEAK 22(12Q15) WILD-TYPE`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        3.98        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6697 
        6.71         2.73         6.15         4.57         5.23        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        4.77         1.55         4.96        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 
        2.56        17.72        15.35        21.73        15.65        25.68 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       14.73        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       12.69        34.92        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0812 TCGA-14-0862 
       11.97         0.95         6.21        23.05         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       16.50        26.33        15.95         1.38         3.75        32.05 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
       12.43         0.99         1.97         7.63         5.88         7.17 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.96         3.78         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1789 
        8.61        14.27         3.39        25.38         3.65         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 
        0.13         9.67         4.87         1.08         7.53         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 
       16.80        14.96        17.79        28.54        13.87         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        7.13         9.37        18.97        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 
       11.51        18.08        16.77        16.08         7.59        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.48         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1980 
        4.77        15.39        21.07         0.49         0.10         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4213 
       15.02         8.84        22.78        25.18         3.72        19.86 
TCGA-32-4719 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
       10.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
       11.84         0.20        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 
       25.58         3.45        20.91        14.33         8.22         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 
        5.92         6.28        20.55       117.50        43.89        36.36 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       60.10        40.18         0.26        21.01        53.62         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       17.69        26.76        37.38        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 
       11.24        17.88        30.74        16.18        19.96        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       46.06        24.59        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        46.06        65.75        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
       14.99       105.21         6.54         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 
       30.67        26.30        10.36         7.96        94.32        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        21.40        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW 
       14.17        33.27        29.85        31.69        26.17        24.99 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC 
       26.76        21.30        17.98       139.04        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
        7.50        44.42        38.89         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       41.13        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       16.18        21.30        75.02        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       16.01        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       22.26        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       28.87        20.71        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.96         7.59         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J1 
       36.13         7.92        26.93        23.51        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       65.39        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       45.93        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 
       46.88        37.71        20.81         4.73        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       20.12        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
       14.14         3.62        10.72        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 
        3.22         2.50        19.86         8.35         9.57        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       26.43        28.70        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0104 
       12.62        51.32         8.81        57.76        16.96        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0281 
       48.95        16.54        16.93        17.72        10.75         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0325 TCGA-02-0326 
       13.87        14.20        15.95        12.23        10.62         7.33 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
       25.71         4.37        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 
       12.95        25.35        14.30        26.70        11.90        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
        8.61        19.46        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        9.44        11.80        10.65         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 
       13.12         4.04        91.00        88.14        20.25        69.90 
TCGA-06-0185 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       73.84        15.42        10.42         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.72        19.82        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26         4.70         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 TCGA-06-0650 
       35.11        12.62         5.75         5.75         2.10        23.57 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-1084 
       46.19         7.17        40.41        16.57        20.78        23.93 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79        11.84        15.32        13.61        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
       12.49         4.93        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6389 TCGA-06-6693 TCGA-06-6694 
        5.98         4.37        31.50         7.79       120.56         7.36 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        37.84       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
       12.23        14.93        18.02        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
       12.56         4.27        42.15        11.08        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
        7.56        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
        0.10        38.17        26.66         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 
       15.06        43.23         7.63         9.73        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       24.79        18.48        10.62        23.51        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
       20.58       127.59         5.82        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
       15.85         9.11        14.53         4.14         2.24        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 
        1.35         5.39         2.04        28.93        19.30         0.79 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 
       13.78        50.53        19.10        53.19         3.91        26.07 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       16.37        11.77         0.66        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
       12.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        7.92         2.33         7.30         5.26        14.93        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       14.53        11.77        31.27        11.01        13.64        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 
       12.76         5.42         7.36        11.38         5.42         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                        0.16                         0.03 
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                       84.33                       211.17 
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                      13.990                       16.405 
[1] "0.2 - 84.3 (14.0)"  "0.0 - 211.2 (16.4)"
[1] "hr=" "2.1"
D22V2, continuous
D22V3, binary
                              cls
clus                             0   1
  AMP PEAK 22(12Q15) MUTATED    93  18
  AMP PEAK 22(12Q15) WILD-TYPE 480 494
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(12Q15) MUTATED     93   18
  AMP PEAK 22(12Q15) WILD-TYPE  480  494
                        clus
vv                       AMP PEAK 22(12Q15) MUTATED
  BRAIN                                          93
  CENTRAL NERVOUS SYSTEM                         18
                        clus
vv                       AMP PEAK 22(12Q15) WILD-TYPE
  BRAIN                                           480
  CENTRAL NERVOUS SYSTEM                          494
[1] 2 2
[1] FALSE
D22V4, binary
                              cls
clus                             0   1
  AMP PEAK 22(12Q15) MUTATED    39  72
  AMP PEAK 22(12Q15) WILD-TYPE 414 560
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(12Q15) MUTATED     39   72
  AMP PEAK 22(12Q15) WILD-TYPE  414  560
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  FEMALE                         39                          414
  MALE                           72                          560
[1] 2 2
[1] FALSE
D22V5, binary
                              cls
clus                             0   1
  AMP PEAK 22(12Q15) MUTATED    18  88
  AMP PEAK 22(12Q15) WILD-TYPE 240 682
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(12Q15) MUTATED     18   88
  AMP PEAK 22(12Q15) WILD-TYPE  240  682
     clus
vv    AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  NO                          18                          240
  YES                         88                          682
[1] 2 2
[1] FALSE
D22V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 22(12Q15) MUTATED             8                             4
  AMP PEAK 22(12Q15) WILD-TYPE         186                            26
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 22(12Q15) MUTATED                  2                 8
  AMP PEAK 22(12Q15) WILD-TYPE              127               181
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 22(12Q15) MUTATED                     2
  AMP PEAK 22(12Q15) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 22(12Q15) MUTATED                                87
  AMP PEAK 22(12Q15) WILD-TYPE                             438
D22V7, multiclass
                                 clus
vv                                AMP PEAK 22(12Q15) MUTATED
  ASTROCYTOMA                                              8
  GLIOBLASTOMA MULTIFORME (GBM)                            4
  OLIGOASTROCYTOMA                                         2
  OLIGODENDROGLIOMA                                        8
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         87
                                 clus
vv                                AMP PEAK 22(12Q15) WILD-TYPE
  ASTROCYTOMA                                              186
  GLIOBLASTOMA MULTIFORME (GBM)                             26
  OLIGOASTROCYTOMA                                         127
  OLIGODENDROGLIOMA                                        181
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          438
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 22(12Q15) MUTATED                                  0     4
  AMP PEAK 22(12Q15) WILD-TYPE                                1    17
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 22(12Q15) MUTATED                           8    95
  AMP PEAK 22(12Q15) WILD-TYPE                        63   864
D22V8, multiclass
                                  clus
vv                                 AMP PEAK 22(12Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     4
  BLACK OR AFRICAN AMERICAN                                 8
  WHITE                                                    95
                                  clus
vv                                 AMP PEAK 22(12Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      17
  BLACK OR AFRICAN AMERICAN                                  63
  WHITE                                                     864
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V9, binary
                              cls
clus                             0   1
  AMP PEAK 22(12Q15) MUTATED     0  97
  AMP PEAK 22(12Q15) WILD-TYPE  44 824
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(12Q15) MUTATED      0   97
  AMP PEAK 22(12Q15) WILD-TYPE   44  824
                        clus
vv                       AMP PEAK 22(12Q15) MUTATED
  HISPANIC OR LATINO                              0
  NOT HISPANIC OR LATINO                         97
                        clus
vv                       AMP PEAK 22(12Q15) WILD-TYPE
  HISPANIC OR LATINO                               44
  NOT HISPANIC OR LATINO                          824
[1] 2 2
[1] FALSE

Clustering(23) Variable = AMP PEAK 23(13Q34) MUTATION ANALYSIS
D23V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 23(13Q34) MUTATED    20  33
  AMP PEAK 23(13Q34) WILD-TYPE 460 565
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                          53                         1025 
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                          33                          565 
$`AMP PEAK 23(13Q34) MUTATED`
TCGA-19-A6J4 TCGA-06-5856 TCGA-12-1092 TCGA-12-1602 TCGA-12-3653 TCGA-14-1453 
        3.98         3.75        21.73         6.77        14.53         1.15 
TCGA-14-4157 TCGA-16-1063 TCGA-19-1390 TCGA-19-1787 TCGA-28-1752 TCGA-32-1970 
        3.42        13.97        25.38        12.66         8.48        15.39 
TCGA-32-2615 TCGA-41-3392 TCGA-DB-5277 TCGA-DU-5853 TCGA-DU-7015 TCGA-DU-7301 
       15.95         0.99        50.86        13.38        90.77        25.91 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-HT-7476 TCGA-HT-7604 TCGA-HT-7611 
       24.43        26.17        33.96         6.54       122.47        57.60 
TCGA-HT-7688 TCGA-HT-7873 TCGA-HT-8563 TCGA-HT-A5R7 TCGA-QH-A65S TCGA-QH-A6X9 
       31.69        23.61        28.27        20.22         2.53         1.91 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84T TCGA-TQ-A7RM TCGA-VM-A8CA TCGA-02-0001 
       20.48        54.77        23.80        36.69        13.51        11.77 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0114 TCGA-02-0281 TCGA-02-0289 TCGA-02-0338 
       53.10        42.74        99.98         3.98        14.20        10.59 
TCGA-06-0146 TCGA-06-0210 TCGA-06-0221 TCGA-06-1087 TCGA-08-0386 TCGA-12-0769 
       20.09         7.40        19.82         4.04        18.02        15.06 
TCGA-14-0817 TCGA-14-0871 TCGA-16-0849 TCGA-19-1388 TCGA-28-5207 
        5.39        28.93        26.07        12.95        11.28 

$`AMP PEAK 23(13Q34) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         2.73         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
       26.79         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 
       15.35        15.65        25.68        14.73        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       26.93        15.22        10.95        12.69        34.92        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       23.05        13.78         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-16-0848 
        5.88         7.17        17.49         7.96         3.78        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 
        6.41         8.61        14.27         3.39         3.65         7.17 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 
       22.49        14.07        16.80        14.96        17.79        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        16.77        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        7.63         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        6.74         4.77        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         9.53         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
        0.20        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       36.20         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        36.36        60.10        40.18         0.26        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       53.62         6.38        17.69        26.76        37.38        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        72.92        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       46.42        18.84        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F 
       63.88        46.06        24.59        30.21        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 
       18.02        14.56        17.46         6.74         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
      117.40        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       18.94        44.02        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       24.99        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
       51.52        37.38         7.50        44.42        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO 
        3.65        19.46        12.43        16.18        21.30        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       16.01        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       18.38        18.71        23.70        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 
        0.13         0.03        16.54         3.75        17.42        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 
        4.01         5.03        29.85        23.18         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 TCGA-HT-7620 
        3.16        22.06        45.99        56.09         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63         0.49        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS 
       13.78         0.23        29.59        34.19        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       28.87        20.71        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.96         7.59         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.34        16.73        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       98.63        31.59        18.71        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       18.61        14.93        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       40.41        44.09        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       43.20         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E TCGA-06-0209 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
       20.81         7.63         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       20.12        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.65        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       10.75        14.47        13.87        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.73        10.62         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       25.12        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.27        16.21         3.35        16.80        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        6.94         3.98        22.72        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
        2.20        11.74         2.33        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.04        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        8.42        11.84         0.53        15.02        24.16         0.72 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       13.64        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        72.36         4.70         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76        23.93         6.84        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       15.32        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 
        4.37         0.43        31.50         7.79         5.39       120.56 
TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        7.36        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       22.29         3.39        12.23        14.93        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.72        12.56         4.27        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.68        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       18.41         7.56        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0772 TCGA-12-0773 
       12.13         3.65        20.38        28.41        53.85        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        7.63         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
       20.58       127.59         5.82         7.59        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       12.23        15.85         9.11        14.53         3.98         4.14 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 
        2.24        11.24         1.35         2.04        19.30         0.79 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
       16.37        11.77        21.90         0.66        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
        5.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        7.92         2.33         7.30         5.26        14.93        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
        5.16        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                        0.99                         0.03 
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                      122.47                       211.17 
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                       15.95                        15.98 
[1] "1.0 - 122.5 (15.9)" "0.0 - 211.2 (16.0)"
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
                              cls
clus                             0   1
  AMP PEAK 23(13Q34) MUTATED    32  22
  AMP PEAK 23(13Q34) WILD-TYPE 541 490
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(13Q34) MUTATED     32   22
  AMP PEAK 23(13Q34) WILD-TYPE  541  490
                        clus
vv                       AMP PEAK 23(13Q34) MUTATED
  BRAIN                                          32
  CENTRAL NERVOUS SYSTEM                         22
                        clus
vv                       AMP PEAK 23(13Q34) WILD-TYPE
  BRAIN                                           541
  CENTRAL NERVOUS SYSTEM                          490
[1] 2 2
[1] FALSE
D23V4, binary
                              cls
clus                             0   1
  AMP PEAK 23(13Q34) MUTATED    19  35
  AMP PEAK 23(13Q34) WILD-TYPE 434 597
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(13Q34) MUTATED     19   35
  AMP PEAK 23(13Q34) WILD-TYPE  434  597
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  FEMALE                         19                          434
  MALE                           35                          597
[1] 2 2
[1] FALSE
D23V5, binary
                              cls
clus                             0   1
  AMP PEAK 23(13Q34) MUTATED    13  40
  AMP PEAK 23(13Q34) WILD-TYPE 245 730
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(13Q34) MUTATED     13   40
  AMP PEAK 23(13Q34) WILD-TYPE  245  730
     clus
vv    AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  NO                          13                          245
  YES                         40                          730
[1] 2 2
[1] FALSE
D23V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 23(13Q34) MUTATED            10                             1
  AMP PEAK 23(13Q34) WILD-TYPE         184                            29
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 23(13Q34) MUTATED                  6                 6
  AMP PEAK 23(13Q34) WILD-TYPE              123               183
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 23(13Q34) MUTATED                     2
  AMP PEAK 23(13Q34) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 23(13Q34) MUTATED                                29
  AMP PEAK 23(13Q34) WILD-TYPE                             496
D23V7, multiclass
                                 clus
vv                                AMP PEAK 23(13Q34) MUTATED
  ASTROCYTOMA                                             10
  GLIOBLASTOMA MULTIFORME (GBM)                            1
  OLIGOASTROCYTOMA                                         6
  OLIGODENDROGLIOMA                                        6
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         29
                                 clus
vv                                AMP PEAK 23(13Q34) WILD-TYPE
  ASTROCYTOMA                                              184
  GLIOBLASTOMA MULTIFORME (GBM)                             29
  OLIGOASTROCYTOMA                                         123
  OLIGODENDROGLIOMA                                        183
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          496
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 23(13Q34) MUTATED                                  0     0
  AMP PEAK 23(13Q34) WILD-TYPE                                1    21
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 23(13Q34) MUTATED                           4    49
  AMP PEAK 23(13Q34) WILD-TYPE                        67   910
D23V8, multiclass
                                  clus
vv                                 AMP PEAK 23(13Q34) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     0
  BLACK OR AFRICAN AMERICAN                                 4
  WHITE                                                    49
                                  clus
vv                                 AMP PEAK 23(13Q34) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  67
  WHITE                                                     910
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V9, binary
                              cls
clus                             0   1
  AMP PEAK 23(13Q34) MUTATED     2  45
  AMP PEAK 23(13Q34) WILD-TYPE  42 876
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(13Q34) MUTATED      2   45
  AMP PEAK 23(13Q34) WILD-TYPE   42  876
                        clus
vv                       AMP PEAK 23(13Q34) MUTATED
  HISPANIC OR LATINO                              2
  NOT HISPANIC OR LATINO                         45
                        clus
vv                       AMP PEAK 23(13Q34) WILD-TYPE
  HISPANIC OR LATINO                               42
  NOT HISPANIC OR LATINO                          876
[1] 2 2
[1] FALSE

Clustering(24) Variable = AMP PEAK 24(14Q32.33) MUTATION ANALYSIS
D24V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 24(14Q32.33) MUTATED    10  34
  AMP PEAK 24(14Q32.33) WILD-TYPE 470 564
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                             44                            1034 
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                             34                             564 
$`AMP PEAK 24(14Q32.33) MUTATED`
TCGA-CS-6665 TCGA-06-5415 TCGA-12-1600 TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 
       51.55         8.55        14.73        44.02        14.53        11.97 
TCGA-19-2620 TCGA-26-1439 TCGA-32-2495 TCGA-32-2632 TCGA-41-2575 TCGA-76-6286 
        4.87        13.87        15.02         8.84         9.53        20.98 
TCGA-DB-5276 TCGA-DH-A669 TCGA-DU-7019 TCGA-DU-A5TS TCGA-HT-A614 TCGA-S9-A6WM 
       72.92        30.21        26.30        31.69         2.70        19.86 
TCGA-TM-A84J TCGA-02-0059 TCGA-02-0075 TCGA-02-0102 TCGA-06-0148 TCGA-06-0151 
       24.16         9.57        20.84        27.02        10.09        46.59 
TCGA-06-0159 TCGA-06-0177 TCGA-06-0195 TCGA-06-0237 TCGA-06-0397 TCGA-06-0414 
        9.44         4.18         7.40        13.64         9.01        35.11 
TCGA-06-0747 TCGA-06-1087 TCGA-06-2563 TCGA-06-2569 TCGA-08-0244 TCGA-08-0246 
        2.70         4.04        30.64         0.43        22.68         4.18 
TCGA-08-0351 TCGA-08-0386 TCGA-08-0510 TCGA-08-0514 TCGA-12-0619 TCGA-14-0867 
       65.33        18.02         4.27        11.08        34.92         2.04 
TCGA-16-0846 TCGA-19-0962 
        3.91         0.66 

$`AMP PEAK 24(14Q32.33) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
       26.79         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 
       15.35        21.73        15.65        25.68         6.77        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       26.93        15.22        10.95        12.69        34.92        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.04        15.12         0.95         6.21        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 
       13.78         3.25         2.89        16.50        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       17.59        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
       21.24        13.97         6.41         8.61        14.27         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 
       14.96        17.79        28.54        10.03         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        16.77        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 
        2.83         0.13         0.66         6.74         4.77        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
       15.95        22.78        25.18        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        2.70        17.06         8.35         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
      117.50         7.69        43.89        36.36        60.10        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.26        21.01        53.62         6.38        17.69        26.76 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       37.38        46.95        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       36.56        78.28        46.42        18.84        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D 
       16.18        19.96        63.88        46.06        24.59        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7290 
        6.54         8.84       117.40        90.77        30.67        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       33.27        29.85        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       26.76        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 
       37.38         7.50        44.42        38.89         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ 
       19.46        12.43        16.18        21.30        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       22.26        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C 
       16.93         1.81        16.14        16.83        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       45.44        41.49        68.32        69.27        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        19.00        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         9.44         5.88         7.96 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.59         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50        16.70        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        28.08        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 
       43.40        45.80        46.88        37.71        20.81         7.63 
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.73         3.22        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       17.79         8.61        19.46        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
        4.04        91.00        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        4.67         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.53        15.02        24.16         0.72        19.82 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 
       13.32        20.42        48.69        10.82         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.70         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        7.86         2.70         0.92        43.46        46.19         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79        11.84        15.32        13.61        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 
       12.49         4.93        17.65        12.56         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 
        5.98         4.37        31.50         7.79         5.39       120.56 
TCGA-06-6694 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        7.36        37.84       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       12.16         9.80        29.23         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
       14.93        15.35        13.97         0.72        12.56        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
       15.98        18.41         7.56        14.73        12.99        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 
        4.14         2.24        11.24         1.35         5.39        28.93 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
       19.30         0.79        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 
       13.28        26.07        16.37        11.77        21.90        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 
        9.07         5.95        12.95         4.64        31.33        14.86 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 
        5.49         1.58         7.92         2.33         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        5.42         7.36        11.38         5.42         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                           0.43                            0.03 
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                          72.92                          211.17 
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                         13.755                          16.110 
[1] "0.4 - 72.9 (13.8)"  "0.0 - 211.2 (16.1)"
[1] "hr=" "1.7"
D24V2, continuous
D24V3, binary
                                 cls
clus                                0   1
  AMP PEAK 24(14Q32.33) MUTATED    36   8
  AMP PEAK 24(14Q32.33) WILD-TYPE 537 504
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 24(14Q32.33) MUTATED     36    8
  AMP PEAK 24(14Q32.33) WILD-TYPE  537  504
                        clus
vv                       AMP PEAK 24(14Q32.33) MUTATED
  BRAIN                                             36
  CENTRAL NERVOUS SYSTEM                             8
                        clus
vv                       AMP PEAK 24(14Q32.33) WILD-TYPE
  BRAIN                                              537
  CENTRAL NERVOUS SYSTEM                             504
[1] 2 2
[1] FALSE
D24V4, binary
                                 cls
clus                                0   1
  AMP PEAK 24(14Q32.33) MUTATED    14  30
  AMP PEAK 24(14Q32.33) WILD-TYPE 439 602
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 24(14Q32.33) MUTATED     14   30
  AMP PEAK 24(14Q32.33) WILD-TYPE  439  602
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  FEMALE                            14                             439
  MALE                              30                             602
[1] 2 2
[1] FALSE
D24V5, binary
                                 cls
clus                                0   1
  AMP PEAK 24(14Q32.33) MUTATED     5  36
  AMP PEAK 24(14Q32.33) WILD-TYPE 253 734
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 24(14Q32.33) MUTATED      5   36
  AMP PEAK 24(14Q32.33) WILD-TYPE  253  734
     clus
vv    AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  NO                              5                             253
  YES                            36                             734
[1] 2 2
[1] FALSE
D24V6, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 24(14Q32.33) MUTATED             2                             2
  AMP PEAK 24(14Q32.33) WILD-TYPE         192                            28
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 24(14Q32.33) MUTATED                  3                 3
  AMP PEAK 24(14Q32.33) WILD-TYPE              126               186
                                 vv
clus                              TREATED PRIMARY GBM
  AMP PEAK 24(14Q32.33) MUTATED                     2
  AMP PEAK 24(14Q32.33) WILD-TYPE                  16
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 24(14Q32.33) MUTATED                                32
  AMP PEAK 24(14Q32.33) WILD-TYPE                             493
D24V7, multiclass
                                 clus
vv                                AMP PEAK 24(14Q32.33) MUTATED
  ASTROCYTOMA                                                 2
  GLIOBLASTOMA MULTIFORME (GBM)                               2
  OLIGOASTROCYTOMA                                            3
  OLIGODENDROGLIOMA                                           3
  TREATED PRIMARY GBM                                         2
  UNTREATED PRIMARY (DE NOVO) GBM                            32
                                 clus
vv                                AMP PEAK 24(14Q32.33) WILD-TYPE
  ASTROCYTOMA                                                 192
  GLIOBLASTOMA MULTIFORME (GBM)                                28
  OLIGOASTROCYTOMA                                            126
  OLIGODENDROGLIOMA                                           186
  TREATED PRIMARY GBM                                          16
  UNTREATED PRIMARY (DE NOVO) GBM                             493
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 24(14Q32.33) MUTATED                                  0     0
  AMP PEAK 24(14Q32.33) WILD-TYPE                                1    21
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 24(14Q32.33) MUTATED                           3    41
  AMP PEAK 24(14Q32.33) WILD-TYPE                        68   918
D24V8, multiclass
                                  clus
vv                                 AMP PEAK 24(14Q32.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        0
  BLACK OR AFRICAN AMERICAN                                    3
  WHITE                                                       41
                                  clus
vv                                 AMP PEAK 24(14Q32.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         21
  BLACK OR AFRICAN AMERICAN                                     68
  WHITE                                                        918
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V9, binary
                                 cls
clus                                0   1
  AMP PEAK 24(14Q32.33) MUTATED     0  42
  AMP PEAK 24(14Q32.33) WILD-TYPE  44 879
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 24(14Q32.33) MUTATED      0   42
  AMP PEAK 24(14Q32.33) WILD-TYPE   44  879
                        clus
vv                       AMP PEAK 24(14Q32.33) MUTATED
  HISPANIC OR LATINO                                 0
  NOT HISPANIC OR LATINO                            42
                        clus
vv                       AMP PEAK 24(14Q32.33) WILD-TYPE
  HISPANIC OR LATINO                                  44
  NOT HISPANIC OR LATINO                             879
[1] 2 2
[1] FALSE

Clustering(25) Variable = AMP PEAK 25(17P13.2) MUTATION ANALYSIS
D25V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 25(17P13.2) MUTATED    20  54
  AMP PEAK 25(17P13.2) WILD-TYPE 460 544
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                            74                           1004 
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                            54                            544 
$`AMP PEAK 25(17P13.2) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-A5U1 TCGA-12-1600 TCGA-12-1602 TCGA-14-0865 
        3.98        51.55         1.87        14.73         6.77        16.50 
TCGA-19-1390 TCGA-27-2521 TCGA-28-1746 TCGA-28-2506 TCGA-32-2615 TCGA-32-4210 
       25.38        16.77         0.20         6.74        15.95         3.72 
TCGA-41-2575 TCGA-41-4097 TCGA-RR-A6KA TCGA-CS-6668 TCGA-DB-A64R TCGA-DH-A669 
        9.53         0.20         6.28        49.94        31.40        30.21 
TCGA-DH-A66F TCGA-DU-5853 TCGA-DU-A6S7 TCGA-E1-5304 TCGA-E1-A7YD TCGA-E1-A7YS 
       17.19        13.38        20.98        41.13        14.30        15.32 
TCGA-FG-5962 TCGA-FG-7634 TCGA-FG-A6J3 TCGA-HT-7468 TCGA-HT-7477 TCGA-HW-A5KJ 
       47.77        15.35        22.26         6.67        24.26        31.63 
TCGA-QH-A86X TCGA-S9-A6TS TCGA-S9-A6U1 TCGA-S9-A6WL TCGA-TM-A84M TCGA-VM-A8CA 
       11.08        62.17        25.81        31.10        24.79        13.51 
TCGA-VW-A8FI TCGA-02-0051 TCGA-02-0266 TCGA-02-0281 TCGA-02-2466 TCGA-06-0151 
        8.05        15.09        17.72         3.98        16.80        46.59 
TCGA-06-0166 TCGA-06-0173 TCGA-06-0195 TCGA-06-0216 TCGA-06-0409 TCGA-06-0414 
        5.85         4.47         7.40        24.16        72.36        35.11 
TCGA-06-0686 TCGA-06-0743 TCGA-06-1087 TCGA-06-1801 TCGA-06-2557 TCGA-08-0347 
       14.20        26.40         4.04        11.84         1.08        25.71 
TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 
       12.16        29.23        65.33         8.42        24.56        31.10 
TCGA-08-0375 TCGA-08-0389 TCGA-08-0392 TCGA-08-0510 TCGA-12-0821 TCGA-12-0822 
       12.23        15.35         0.72         4.27        10.62        23.51 
TCGA-12-0827 TCGA-12-1096 TCGA-14-0813 TCGA-15-1447 TCGA-16-0849 TCGA-19-1388 
       38.76         9.11         1.35        53.19        26.07        12.95 
TCGA-28-5207 TCGA-28-5218 
       11.28         5.16 

$`AMP PEAK 25(17P13.2) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
       26.79         3.12         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       21.73        15.65        25.68        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       23.05        13.78         3.25         2.89        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       17.59        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
       21.24        13.97         6.41         8.61        14.27         3.39 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       14.96        17.79        28.54        10.03        13.87         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        7.13         9.37         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        18.08        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.78         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        0.13         0.66         4.77        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 
       14.86        16.93        12.23        20.78        15.02         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        25.18        21.14        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 
       19.23         0.85        13.35         8.94         0.99         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
       11.84        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       36.20         5.92        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64S 
       31.63        24.20        25.48        30.12         5.98        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       24.59        27.81        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 
       10.36         7.96        94.32        18.94        44.02        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 
       24.99        33.96        25.55        21.57        95.11        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
       51.52        37.38         7.50        44.42        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       50.14        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       95.57       130.78        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YU 
       12.43        16.18        21.30        75.02        51.88         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       32.35        39.48         0.23         0.20        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
        5.72        27.52         0.10        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C 
       16.93         1.81        16.14        16.83        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       45.44        41.49        68.32        69.27        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       40.01        42.54        24.92        12.76        28.87        20.71 
TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       19.00        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         9.44         5.88         7.96         7.59 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-R8-A6MK 
       16.73         1.91        16.50        16.70        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
        2.07        19.59        30.67        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 
       40.93        35.38        36.82        24.39        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN 
      135.22        85.55        38.56        84.99        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       40.83        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        45.93        43.20 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 
       43.40        45.80        46.88        37.71        20.81         7.63 
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.10        42.74        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.73         3.22        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.65        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       47.11        11.34         9.27        16.21         3.35        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       10.09         8.61        19.46        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 
       10.65        19.66         3.29        13.12         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        4.67         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
       11.84         0.53        15.02         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.70         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        9.80         2.10        23.57        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
       16.57        20.78        26.76        23.93         6.84        26.79 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       15.32        13.61        33.90        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 
        0.43        31.50         7.79         5.39       120.56         7.36 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        37.84         4.18       115.86         1.74         8.42 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
        9.80         1.28        17.95        37.58        22.29         3.39 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
       14.93        18.02        13.97        12.56        42.15        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        18.41         7.56        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       91.76        24.79        18.48        27.78         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
      127.59         5.82         7.59        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
       15.85        14.53         3.98         4.14         2.24        11.24 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        5.39         2.04        28.93        19.30         0.79        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0850 TCGA-19-0955 
       50.53        19.10        13.28         3.91        16.37        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       21.90         0.66        10.75         9.07         5.95         4.64 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
       31.33        14.86         5.49         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26        14.93        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01        13.64        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        5.42         7.36        11.38         5.42         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                          0.20                           0.03 
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                         72.36                         211.17 
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                        15.335                         16.045 
[1] "0.2 - 72.4 (15.3)"  "0.0 - 211.2 (16.0)"
[1] "hr=" "1.5"
D25V2, continuous
D25V3, binary
                                cls
clus                               0   1
  AMP PEAK 25(17P13.2) MUTATED    51  23
  AMP PEAK 25(17P13.2) WILD-TYPE 522 489
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17P13.2) MUTATED     51   23
  AMP PEAK 25(17P13.2) WILD-TYPE  522  489
                        clus
vv                       AMP PEAK 25(17P13.2) MUTATED
  BRAIN                                            51
  CENTRAL NERVOUS SYSTEM                           23
                        clus
vv                       AMP PEAK 25(17P13.2) WILD-TYPE
  BRAIN                                             522
  CENTRAL NERVOUS SYSTEM                            489
[1] 2 2
[1] FALSE
D25V4, binary
                                cls
clus                               0   1
  AMP PEAK 25(17P13.2) MUTATED    23  51
  AMP PEAK 25(17P13.2) WILD-TYPE 430 581
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17P13.2) MUTATED     23   51
  AMP PEAK 25(17P13.2) WILD-TYPE  430  581
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  FEMALE                           23                            430
  MALE                             51                            581
[1] 2 2
[1] FALSE
D25V5, binary
                                cls
clus                               0   1
  AMP PEAK 25(17P13.2) MUTATED    20  52
  AMP PEAK 25(17P13.2) WILD-TYPE 238 718
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17P13.2) MUTATED     20   52
  AMP PEAK 25(17P13.2) WILD-TYPE  238  718
     clus
vv    AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  NO                            20                            238
  YES                           52                            718
[1] 2 2
[1] FALSE
D25V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 25(17P13.2) MUTATED            10                             4
  AMP PEAK 25(17P13.2) WILD-TYPE         184                            26
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 25(17P13.2) MUTATED                  1                12
  AMP PEAK 25(17P13.2) WILD-TYPE              128               177
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 25(17P13.2) MUTATED                     1
  AMP PEAK 25(17P13.2) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 25(17P13.2) MUTATED                                46
  AMP PEAK 25(17P13.2) WILD-TYPE                             479
D25V7, multiclass
                                 clus
vv                                AMP PEAK 25(17P13.2) MUTATED
  ASTROCYTOMA                                               10
  GLIOBLASTOMA MULTIFORME (GBM)                              4
  OLIGOASTROCYTOMA                                           1
  OLIGODENDROGLIOMA                                         12
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           46
                                 clus
vv                                AMP PEAK 25(17P13.2) WILD-TYPE
  ASTROCYTOMA                                                184
  GLIOBLASTOMA MULTIFORME (GBM)                               26
  OLIGOASTROCYTOMA                                           128
  OLIGODENDROGLIOMA                                          177
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            479
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 25(17P13.2) MUTATED                                  0     0
  AMP PEAK 25(17P13.2) WILD-TYPE                                1    21
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 25(17P13.2) MUTATED                           6    62
  AMP PEAK 25(17P13.2) WILD-TYPE                        65   897
D25V8, multiclass
                                  clus
vv                                 AMP PEAK 25(17P13.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       0
  BLACK OR AFRICAN AMERICAN                                   6
  WHITE                                                      62
                                  clus
vv                                 AMP PEAK 25(17P13.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        21
  BLACK OR AFRICAN AMERICAN                                    65
  WHITE                                                       897
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V9, binary
                                cls
clus                               0   1
  AMP PEAK 25(17P13.2) MUTATED     2  63
  AMP PEAK 25(17P13.2) WILD-TYPE  42 858
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(17P13.2) MUTATED      2   63
  AMP PEAK 25(17P13.2) WILD-TYPE   42  858
                        clus
vv                       AMP PEAK 25(17P13.2) MUTATED
  HISPANIC OR LATINO                                2
  NOT HISPANIC OR LATINO                           63
                        clus
vv                       AMP PEAK 25(17P13.2) WILD-TYPE
  HISPANIC OR LATINO                                 42
  NOT HISPANIC OR LATINO                            858
[1] 2 2
[1] FALSE

Clustering(26) Variable = AMP PEAK 26(17Q25.1) MUTATION ANALYSIS
D26V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 26(17Q25.1) MUTATED    36  91
  AMP PEAK 26(17Q25.1) WILD-TYPE 444 507
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                           127                            951 
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                            91                            507 
$`AMP PEAK 26(17Q25.1) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-6700 TCGA-06-A5U1 TCGA-12-1092 TCGA-12-1600 
        3.98        51.55         4.77         1.87        21.73        14.73 
TCGA-12-1602 TCGA-12-5301 TCGA-14-0865 TCGA-14-1453 TCGA-14-1794 TCGA-14-1827 
        6.77         2.04        16.50         1.15         0.99         5.88 
TCGA-14-1829 TCGA-14-3477 TCGA-16-1063 TCGA-19-1390 TCGA-19-1392 TCGA-19-A60I 
        7.17         3.78        13.97        25.38         3.65        17.79 
TCGA-27-1835 TCGA-27-2521 TCGA-28-1746 TCGA-28-1757 TCGA-28-2506 TCGA-32-1991 
       21.30        16.77         0.20         0.13         6.74        16.93 
TCGA-32-2495 TCGA-32-2615 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-74-6573 
       15.02        15.95         9.53        11.84         0.20         3.45 
TCGA-RR-A6KA TCGA-DB-A4XB TCGA-DB-A4XF TCGA-DB-A64P TCGA-DB-A64Q TCGA-DH-5140 
        6.28        30.21        33.57        30.12         5.98        19.96 
TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-6399 TCGA-DU-7010 TCGA-DU-7013 TCGA-DU-7304 
       30.21        17.19        65.75        14.99         8.84        23.31 
TCGA-DU-A6S7 TCGA-E1-5304 TCGA-E1-A7YD TCGA-E1-A7YO TCGA-F6-A8O4 TCGA-FG-5962 
       20.98        41.13        14.30        75.02         0.20        47.77 
TCGA-FG-7634 TCGA-FG-A60J TCGA-FG-A87Q TCGA-HT-7477 TCGA-HT-8010 TCGA-HT-A61C 
       15.35        14.76         5.72        24.26         1.64        17.65 
TCGA-IK-7675 TCGA-P5-A736 TCGA-QH-A6CV TCGA-RY-A840 TCGA-S9-A6TS TCGA-S9-A6U1 
       19.00         7.56        14.53        28.08        62.17        25.81 
TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A7J0 TCGA-TM-A84F 
        5.85        85.55        31.10        19.86        20.02        59.05 
TCGA-TM-A84H TCGA-TM-A84M TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-VM-A8CA TCGA-VM-A8CH 
       30.44        24.79        44.09        36.69        13.51        23.47 
TCGA-VW-A8FI TCGA-02-0003 TCGA-02-0047 TCGA-02-0051 TCGA-02-0104 TCGA-02-0106 
        8.05         4.73        14.73        15.09        65.00        11.67 
TCGA-02-0266 TCGA-02-0281 TCGA-02-0325 TCGA-02-0456 TCGA-02-2466 TCGA-06-0151 
       17.72         3.98        10.62         3.35        16.80        46.59 
TCGA-06-0152 TCGA-06-0166 TCGA-06-0173 TCGA-06-0188 TCGA-06-0195 TCGA-06-0216 
       12.33         5.85         4.47        44.58         7.40        24.16 
TCGA-06-0237 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 TCGA-06-0686 
       13.64        72.36         4.70        35.11         2.10        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-2557 
       26.40        46.88        23.93         4.04        11.84         1.08 
TCGA-06-6694 TCGA-08-0346 TCGA-08-0350 TCGA-08-0353 TCGA-08-0510 TCGA-08-0514 
        7.36         8.42        29.23         8.42         4.27        11.08 
TCGA-08-0531 TCGA-12-0619 TCGA-12-0662 TCGA-12-0818 TCGA-12-0821 TCGA-12-0827 
        7.56        34.92        38.17        91.76        10.62        38.76 
TCGA-12-1090 TCGA-12-1096 TCGA-12-1098 TCGA-14-0813 TCGA-15-1449 TCGA-16-0846 
        7.59         9.11         3.98         1.35        13.28         3.91 
TCGA-19-1388 TCGA-28-5207 TCGA-28-5215 TCGA-28-5218 TCGA-32-2616 TCGA-76-6280 
       12.95        11.28        11.01         5.16         7.36        11.38 
TCGA-76-6660 
        3.75 

$`AMP PEAK 26(17Q25.1) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 
        8.32        12.85         4.77         1.55         4.96        26.79 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1598 
        3.12         2.56        14.60        17.72        15.35        15.65 
TCGA-12-1599 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.68        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0736 
       12.69        34.92        14.53        14.93         3.22        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
       11.97         0.95         6.21        23.05        13.78         3.25 
TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
        2.89        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.05        58.78        23.11         7.10        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
       40.96         6.67        12.43         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 
        7.63        17.49         7.96         3.42        17.59        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 
        4.57        10.29        14.01         9.14        21.24         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        8.61        14.27         3.39         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       14.07        16.80        14.96        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        18.08        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.78         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-2502 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        0.66         4.77        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       12.23        20.78         8.84        22.78        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 
       13.35         8.94         0.99         4.44        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        4.08         1.45        25.58        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 
       34.45        18.64        36.20         5.92        20.55       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01        53.62         6.38        17.69        26.76        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       46.95        48.30        49.94        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XD TCGA-DB-A4XE 
       36.56        78.28        46.42        18.84        39.78        37.45 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64R TCGA-DB-A64S 
       72.95        31.63        24.20        25.48        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       17.88        30.74        16.18        63.88        46.06        24.59 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       27.81        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7014 
       62.96       156.23       154.36       105.21         6.54       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 
       18.94        44.02        25.91        60.30        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
       95.11        22.29        11.41        26.76        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
       38.89         0.56        50.14        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH 
      134.27        78.21        95.57       130.78        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ 
        3.65        19.46        12.43        16.18        21.30        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5963 
       73.48       145.05        32.35        39.48         0.23        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       18.44        17.88        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       13.68        14.24        16.01        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60L 
       38.27        10.72        18.38        18.71        23.70        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
       48.69        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
        3.72        11.28        31.43        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74H 
       16.93         1.81        16.14        16.83        17.52         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        68.32        69.27        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54        24.92        31.63        12.76        28.87        20.71 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         9.44         5.88         7.96         7.59         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
       13.61         9.60        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.70        11.08        12.99        88.83        94.03        32.65 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46         9.90         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       24.39        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WN 
      123.65        75.25       135.22        38.56        84.99        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       23.51        19.99         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84Q 
       40.64        28.08        24.16        40.83        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
        2.04        40.41        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VV-A829 
       43.20         0.10         7.89        39.16        20.02        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 
       43.40        45.80        46.88        37.71        20.81         7.63 
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
       11.77        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 
        3.62        10.72        10.52        18.31         6.87         3.22 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.18        92.65        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.54        16.93        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         9.90         7.73         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 
       10.55        47.11        11.34         9.27        16.21        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       10.09         8.61        19.46        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
       19.66         3.29        13.12         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 
       27.22        15.42        10.42        38.96         4.67         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       15.02         0.72        19.82        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.82         9.01         0.26         9.57         3.16        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0745 TCGA-06-0747 
        5.75         5.75         9.80        23.57         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 
       16.57        20.78        26.76         6.84        26.79        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        33.90        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0245 
       31.50         7.79         5.39       120.56        22.68        37.84 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
        4.18       115.86         1.74        25.71        12.16         9.80 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
       65.33         1.28        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
       13.97         0.72        12.56        42.15        19.59        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.73        12.99        10.45         7.59        94.78         0.10 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       14.86        24.79        18.48        23.51        27.78         8.94 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
       20.58       127.59         5.82        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0817 
       15.85        14.53         4.14         2.24        11.24         5.39 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
        2.04        28.93        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 
       19.10        53.19        26.07        16.37        11.77        21.90 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 
        0.66        10.75         9.07         5.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       14.86         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26        14.93        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-76-6283 
       23.44        13.64        22.68        12.76         5.42         5.42 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                          0.13                           0.03 
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                         91.76                         211.17 
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                         13.97                          16.34 
[1] "0.1 - 91.8 (14.0)"  "0.0 - 211.2 (16.3)"
[1] "hr=" "1.7"
D26V2, continuous
D26V3, binary
                                cls
clus                               0   1
  AMP PEAK 26(17Q25.1) MUTATED    84  43
  AMP PEAK 26(17Q25.1) WILD-TYPE 489 469
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17Q25.1) MUTATED     84   43
  AMP PEAK 26(17Q25.1) WILD-TYPE  489  469
                        clus
vv                       AMP PEAK 26(17Q25.1) MUTATED
  BRAIN                                            84
  CENTRAL NERVOUS SYSTEM                           43
                        clus
vv                       AMP PEAK 26(17Q25.1) WILD-TYPE
  BRAIN                                             489
  CENTRAL NERVOUS SYSTEM                            469
[1] 2 2
[1] FALSE
D26V4, binary
                                cls
clus                               0   1
  AMP PEAK 26(17Q25.1) MUTATED    44  83
  AMP PEAK 26(17Q25.1) WILD-TYPE 409 549
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17Q25.1) MUTATED     44   83
  AMP PEAK 26(17Q25.1) WILD-TYPE  409  549
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  FEMALE                           44                            409
  MALE                             83                            549
[1] 2 2
[1] FALSE
D26V5, binary
                                cls
clus                               0   1
  AMP PEAK 26(17Q25.1) MUTATED    30  92
  AMP PEAK 26(17Q25.1) WILD-TYPE 228 678
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17Q25.1) MUTATED     30   92
  AMP PEAK 26(17Q25.1) WILD-TYPE  228  678
     clus
vv    AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  NO                            30                            228
  YES                           92                            678
[1] 2 2
[1] FALSE
D26V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 26(17Q25.1) MUTATED            21                             6
  AMP PEAK 26(17Q25.1) WILD-TYPE         173                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 26(17Q25.1) MUTATED                  8                14
  AMP PEAK 26(17Q25.1) WILD-TYPE              121               175
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 26(17Q25.1) MUTATED                     2
  AMP PEAK 26(17Q25.1) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 26(17Q25.1) MUTATED                                76
  AMP PEAK 26(17Q25.1) WILD-TYPE                             449
D26V7, multiclass
                                 clus
vv                                AMP PEAK 26(17Q25.1) MUTATED
  ASTROCYTOMA                                               21
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                           8
  OLIGODENDROGLIOMA                                         14
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           76
                                 clus
vv                                AMP PEAK 26(17Q25.1) WILD-TYPE
  ASTROCYTOMA                                                173
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           121
  OLIGODENDROGLIOMA                                          175
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            449
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 26(17Q25.1) MUTATED                                  0     2
  AMP PEAK 26(17Q25.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 26(17Q25.1) MUTATED                          10   108
  AMP PEAK 26(17Q25.1) WILD-TYPE                        61   851
D26V8, multiclass
                                  clus
vv                                 AMP PEAK 26(17Q25.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  10
  WHITE                                                     108
                                  clus
vv                                 AMP PEAK 26(17Q25.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    61
  WHITE                                                       851
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V9, binary
                                cls
clus                               0   1
  AMP PEAK 26(17Q25.1) MUTATED     6 105
  AMP PEAK 26(17Q25.1) WILD-TYPE  38 816
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(17Q25.1) MUTATED      6  105
  AMP PEAK 26(17Q25.1) WILD-TYPE   38  816
                        clus
vv                       AMP PEAK 26(17Q25.1) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                          105
                        clus
vv                       AMP PEAK 26(17Q25.1) WILD-TYPE
  HISPANIC OR LATINO                                 38
  NOT HISPANIC OR LATINO                            816
[1] 2 2
[1] FALSE

Clustering(27) Variable = AMP PEAK 27(19P13.3) MUTATION ANALYSIS
D27V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 27(19P13.3) MUTATED   138 231
  AMP PEAK 27(19P13.3) WILD-TYPE 342 367
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                           369                            709 
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                           231                            367 
$`AMP PEAK 27(19P13.3) MUTATED`
TCGA-DH-5141 TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K TCGA-R8-A73M TCGA-06-1806 
       31.82        62.01        20.09        17.82        59.38        15.32 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-6388 TCGA-06-6695 
        8.98         8.55         6.71         3.75         5.23         8.32 
TCGA-06-6699 TCGA-06-A6S0 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        1.55         3.12        15.65        25.68        14.73         6.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1402 
        6.21        23.05        13.78        26.33        15.95        32.05 
TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 
       58.78         7.10        30.18        17.85         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 
        7.96         3.42        17.59        10.29        14.01        21.24 
TCGA-16-1063 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2620 
       13.97        25.38         3.65         7.17         3.25         4.87 
TCGA-19-2629 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 
       24.23        17.19         8.02         4.73         1.78        14.07 
TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1799 TCGA-27-1833 TCGA-27-2518 
       16.80        17.79        28.54         9.37        24.23        24.76 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2528 TCGA-28-1746 TCGA-28-1749 
       16.77        16.08         7.59        15.78         0.20         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-2502 TCGA-28-2506 TCGA-32-1970 
        7.63         8.48         1.22         0.66         6.74        15.39 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1987 TCGA-32-2495 
        0.10        15.85        19.50         4.67        14.86        15.02 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 TCGA-41-2572 
        8.84        25.18        21.14        12.59        19.23        13.35 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-4W-AA9R TCGA-4W-AA9T 
        9.53         4.44        11.84        15.12         4.08        25.58 
TCGA-74-6578 TCGA-76-4925 TCGA-76-4934 TCGA-76-6656 TCGA-76-6661 TCGA-76-6663 
       14.33         4.80         2.53         4.83        23.90        18.64 
TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 
       36.20         6.28        20.55        21.01        53.62        17.69 
TCGA-CS-6188 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-A4XD TCGA-DB-A4XG 
       26.76        49.94        75.25        91.13        39.78        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64W 
       31.63        24.20        30.12        31.40        27.81        14.40 
TCGA-DB-A75L TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UU 
       11.24        63.88        24.59        30.21        17.19        13.71 
TCGA-DU-5854 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 
        8.45        15.16        52.11        22.42        46.06         1.22 
TCGA-DU-6402 TCGA-DU-6406 TCGA-DU-7009 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7298 
        7.04        16.83       154.36        90.77        26.30        18.94 
TCGA-DU-7306 TCGA-DU-8164 TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A76K TCGA-DU-A7TJ 
       41.98        21.40        25.55        95.11        11.41         0.56 
TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YO TCGA-E1-A7YS 
       41.13        78.21        19.46        16.18        75.02        15.32 
TCGA-FG-5962 TCGA-FG-6692 TCGA-FG-7638 TCGA-FG-7643 TCGA-FG-8186 TCGA-FG-8188 
       47.77        18.44        22.55        20.09        16.01        14.96 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A87Q TCGA-HT-7468 
       10.72        18.38        28.54        36.66         5.72         6.67 
TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7480 TCGA-HT-7483 TCGA-HT-7605 TCGA-HT-7608 
       11.54         0.03        75.19       172.77         4.57        22.06 
TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7695 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7875 
       44.68         0.10        14.53         0.49        23.61         0.33 
TCGA-HT-7882 TCGA-HT-8012 TCGA-HT-8104 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A615 
        3.72         9.40        12.23        27.35         5.33        16.93 
TCGA-HT-A61B TCGA-HW-7495 TCGA-HW-8322 TCGA-KT-A7W1 TCGA-P5-A5F0 TCGA-P5-A72U 
       17.52        35.44        24.92        14.40         9.44         0.23 
TCGA-P5-A730 TCGA-QH-A65X TCGA-QH-A6CV TCGA-QH-A6CZ TCGA-QH-A6XC TCGA-QH-A86X 
       10.95        15.85        14.53         9.17        16.70        11.08 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-S9-A6TV 
       88.83        94.03        30.87         5.46        28.08        18.77 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U2 TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WH 
       40.93        35.38        29.85       123.65       135.22        38.56 
TCGA-S9-A6WM TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QZ TCGA-S9-A7R1 
       19.86        19.99         8.19         2.04        27.16       169.84 
TCGA-TM-A7C3 TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84G TCGA-TM-A84M TCGA-TM-A84Q 
       54.77        65.39        24.92        40.64        24.79        25.38 
TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RN TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-VM-A8CA 
       19.69         2.04        33.73        30.05        26.14        13.51 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VW-A7QS TCGA-W9-A837 TCGA-WY-A85E TCGA-06-0209 
        0.10        39.16        23.21        51.06        20.81         7.63 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       23.18        10.59        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0028 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0051 
       20.12        90.58         3.62        10.72        18.31        15.09 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        6.54        19.86        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 
       10.19        20.84        89.72        27.02        11.67        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.65        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0333 TCGA-02-0430 
       10.75        13.87        14.20        15.95         4.37        10.55 
TCGA-02-2466 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       16.80        15.45         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0137 TCGA-06-0145 TCGA-06-0146 
        6.94         3.98        33.67        26.70         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       17.79        10.09        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0173 
       10.45         3.19        10.82         9.44        56.91         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0185 TCGA-06-0190 
        3.22         4.04         4.18        20.25        73.84        10.42 
TCGA-06-0192 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0211 TCGA-06-0216 
       38.96         0.39         7.66         8.42        11.84        24.16 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       19.82        13.64        10.82         0.26        72.36         4.70 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
       35.11         5.75        23.57        26.40        46.88         2.70 
TCGA-06-0879 TCGA-06-1086 TCGA-06-1802 TCGA-06-2563 TCGA-06-2565 TCGA-06-2570 
       40.41         6.84        15.32        30.64        16.64        31.50 
TCGA-06-6693 TCGA-08-0246 TCGA-08-0347 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 
      120.56         4.18        25.71         1.28         8.42        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0375 TCGA-08-0386 TCGA-08-0390 TCGA-08-0392 
       31.10        37.58        12.23        18.02        13.97         0.72 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0529 TCGA-08-0531 
       12.56         4.27        11.08        19.33        18.41         7.56 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 
       94.78         0.10        25.97        26.66        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 
       15.06        53.85        14.93        14.86        24.79        18.48 
TCGA-12-0826 TCGA-12-0829 TCGA-12-1094 TCGA-12-1099 TCGA-14-0789 TCGA-14-0817 
       27.78        20.58        12.23         4.14        11.24         5.39 
TCGA-14-0867 TCGA-15-1446 TCGA-16-0846 TCGA-19-0955 TCGA-19-1386 TCGA-19-1388 
        2.04        19.10         3.91        11.77         9.07        12.95 
TCGA-26-5139 TCGA-28-2513 TCGA-28-2514 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 
        1.58         7.30         5.26        17.88        14.53        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-6450 TCGA-76-6280 TCGA-76-6660 
       11.01        13.64         5.16         5.42        11.38         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

$`AMP PEAK 27(19P13.3) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-A66B 
        1.48         3.98        51.55        46.88        46.72        42.05 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 
       17.16        23.90        20.45        18.64        21.40        45.60 
TCGA-IK-8125 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       42.77        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 
        2.73         6.15         4.57        12.85         4.77         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
        4.96        26.79         1.87         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-3644 TCGA-12-3646 TCGA-12-5295 TCGA-12-5299 
       15.35        21.73        59.77        44.02        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0812 TCGA-14-0862 
        2.04        15.12        11.97         0.95         3.25         2.89 
TCGA-14-0865 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1453 
       16.50         1.38         1.12         3.75        23.11         1.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3477 TCGA-16-1045 TCGA-16-1047 
       17.79         7.63         5.88         3.78        29.03         4.57 
TCGA-16-1060 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1787 
        9.14         6.41         8.61        14.27         3.39        12.66 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 TCGA-19-5954 TCGA-19-5956 
        7.00         7.04         6.64        18.90        12.10        22.49 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-5132 
       14.96        10.03        13.87         9.73         7.13         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 
       40.54        21.30        30.05        14.04        11.51        18.08 
TCGA-27-2526 TCGA-27-2527 TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 
        2.86        14.40         2.53         8.35         1.55         2.83 
TCGA-28-1757 TCGA-28-2509 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1986 
        0.13         4.77        21.07         0.49         1.18        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 TCGA-32-4210 
       16.93        12.23        20.78        15.95        22.78         3.72 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-3392 TCGA-41-4097 
       19.86        10.85         0.85         8.94         0.99         0.20 
TCGA-41-6646 TCGA-4W-AA9S TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 
       12.46         1.45         3.45        20.91         4.34         8.22 
TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        7.50         4.54         3.09         3.65         9.17        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6657 TCGA-76-6662 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.03        34.45         5.92       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5397 TCGA-CS-6290 
       36.36        60.10        40.18         0.26         6.38        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 
       46.95        48.30        49.12       122.73        81.96        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       72.92        50.86        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O TCGA-DB-A64Q 
       18.84        30.21        37.45        33.57        25.48         5.98 
TCGA-DB-A64S TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O 
       27.45        29.23        18.51        12.10        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5143 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UR 
       16.18        19.96        46.06        27.81        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       23.21        17.46        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         6.81       182.33        18.94        17.49 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 
      211.17        49.02        75.16        65.75        87.45        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
      133.74        19.89        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
        8.84       117.40        30.67        10.36         7.96        94.32 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 
       44.02        25.91        60.30        23.31         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L 
       24.99        33.96        21.57        20.98        22.29        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42        38.89        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
       57.93       134.27        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7YU 
       93.21         3.65        12.43        21.30        51.88         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       32.35        39.48         0.23         0.20        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 
       36.82        18.77        14.93        42.54        41.33        15.35 
TCGA-FG-7636 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8189 
       17.88        20.61        28.34        13.68        14.24        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       32.61        38.27        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A711 TCGA-FN-7833 
       15.02        16.44        22.26        10.78        48.69        27.52 
TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
        0.10        40.11         0.13        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 
        6.54        24.26         6.38        40.34        95.93       106.95 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 
        4.01         5.03        29.85        23.18       122.47        17.29 
TCGA-HT-7607 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
        3.16        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 
        0.16        16.24         0.76         6.05        42.74        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7874 
       39.48        19.23        39.09         0.23        50.63        37.15 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 
        0.13         3.68         5.33        35.47        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
        1.64        16.24        63.55         0.10        37.87        33.01 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
        0.23        29.59        34.19        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 
       26.04         0.13        20.22         0.07         0.10         2.70 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
        1.81        16.14        16.83        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KJ 
       68.32        69.27        39.75        40.01        42.54        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EV 
       12.76        28.87        20.71        19.00        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 
        6.71         7.99         2.37         2.30         5.88         7.96 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A731 
        7.59         1.28        10.42        13.25        11.64         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65Z 
        2.37         4.41        15.16         2.53        12.62        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 
       19.33        14.83        13.61        12.23        13.41        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A870 
       14.53        16.34        16.73         1.91        16.50        12.99 
TCGA-R8-A6MO TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
       32.65         9.90         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U5 
       87.12        41.10        36.82        24.39        25.81        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WD TCGA-S9-A6WG 
       35.15        98.24        95.93         5.85        75.25        85.55 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J3 
       36.13         7.92        26.93        23.51        20.02        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       15.06        18.54        28.37        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 
       98.63        31.59        18.71        20.48        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       34.78        16.18        59.05        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       40.83        33.24        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RR 
       15.98        40.41        44.09        36.69        31.20        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        45.93        43.20 
TCGA-VM-A8CD TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A8FI 
        7.89        20.02        23.47        37.05        16.01         8.05 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 
       37.71        11.77         4.73        18.35        35.41        20.71 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       53.10        42.74        24.59        12.16         2.83        14.14 
TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 
       10.52         6.87        14.73         3.22        12.59         2.50 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 TCGA-02-0079 TCGA-02-0083 
        8.35         9.57         6.02        28.70        27.25        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 
       65.00        17.65        99.98        14.47         3.98        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 
       25.12        10.59        12.39        14.50        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 
        9.27        16.21         3.35        12.92        15.32        20.32 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 
       22.72        12.95        25.35        14.30        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0149 TCGA-06-0160 
        0.20        10.29         2.20        11.74         8.61        11.80 
TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 
       91.00        88.14         3.65        69.90        27.22        44.58 
TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0210 TCGA-06-0213 
       15.42         4.67         7.40         5.56         7.40         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 
       15.02         0.72        13.32        20.42        48.69         9.01 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        9.57         3.16        12.62         5.75         9.80         2.10 
TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
       14.20         7.86         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
        7.17        16.57        20.78        26.76        23.93         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
       26.79        11.84        13.61        33.90         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 
        4.93        17.65        12.56         5.95         5.98         4.37 
TCGA-06-2569 TCGA-06-6389 TCGA-06-6390 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
        0.43         7.79         5.39         7.36        22.68        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
      115.86         1.74         8.42        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 TCGA-08-0389 
       65.33        17.95        22.29         3.39        14.93        15.35 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       42.15        19.59        58.68        10.75         4.80         7.27 
TCGA-08-0525 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       15.98        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       38.17        12.13         3.65        43.23         7.63         9.73 
TCGA-12-0818 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 
       91.76        10.62        23.51        38.76         8.94       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 
        5.82         7.59        33.21        15.98        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0813 TCGA-14-0871 TCGA-14-1037 
       14.53         3.98         2.24         1.35        28.93        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 
        0.79        13.78        50.53        53.19        13.28        26.07 
TCGA-16-0850 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 
       16.37        21.90         0.66        10.75         5.95         4.64 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-6173 TCGA-26-6174 TCGA-28-5204 
       31.33        14.86         5.49         7.92         2.33        14.93 
TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 TCGA-28-5219 TCGA-28-5220 TCGA-32-2616 
       11.28        11.77        31.27        22.68        12.76         7.36 
TCGA-76-6283 
        5.42 

  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                        172.77                         211.17 
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                         16.18                          15.95 
[1] "0.0 - 172.8 (16.2)" "0.1 - 211.2 (15.9)"
[1] "hr=" "1.2"
D27V2, continuous
D27V3, binary
                                cls
clus                               0   1
  AMP PEAK 27(19P13.3) MUTATED   244 129
  AMP PEAK 27(19P13.3) WILD-TYPE 329 383
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(19P13.3) MUTATED    244  129
  AMP PEAK 27(19P13.3) WILD-TYPE  329  383
                        clus
vv                       AMP PEAK 27(19P13.3) MUTATED
  BRAIN                                           244
  CENTRAL NERVOUS SYSTEM                          129
                        clus
vv                       AMP PEAK 27(19P13.3) WILD-TYPE
  BRAIN                                             329
  CENTRAL NERVOUS SYSTEM                            383
[1] 2 2
[1] FALSE
D27V4, binary
                                cls
clus                               0   1
  AMP PEAK 27(19P13.3) MUTATED   149 224
  AMP PEAK 27(19P13.3) WILD-TYPE 304 408
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(19P13.3) MUTATED    149  224
  AMP PEAK 27(19P13.3) WILD-TYPE  304  408
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  FEMALE                          149                            304
  MALE                            224                            408
[1] 2 2
[1] FALSE
D27V5, binary
                                cls
clus                               0   1
  AMP PEAK 27(19P13.3) MUTATED    87 268
  AMP PEAK 27(19P13.3) WILD-TYPE 171 502
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(19P13.3) MUTATED     87  268
  AMP PEAK 27(19P13.3) WILD-TYPE  171  502
     clus
vv    AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  NO                            87                            171
  YES                          268                            502
[1] 2 2
[1] FALSE
D27V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 27(19P13.3) MUTATED            26                            13
  AMP PEAK 27(19P13.3) WILD-TYPE         168                            17
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 27(19P13.3) MUTATED                 29                74
  AMP PEAK 27(19P13.3) WILD-TYPE              100               115
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 27(19P13.3) MUTATED                    10
  AMP PEAK 27(19P13.3) WILD-TYPE                   8
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 27(19P13.3) MUTATED                               221
  AMP PEAK 27(19P13.3) WILD-TYPE                             304
D27V7, multiclass
                                 clus
vv                                AMP PEAK 27(19P13.3) MUTATED
  ASTROCYTOMA                                               26
  GLIOBLASTOMA MULTIFORME (GBM)                             13
  OLIGOASTROCYTOMA                                          29
  OLIGODENDROGLIOMA                                         74
  TREATED PRIMARY GBM                                       10
  UNTREATED PRIMARY (DE NOVO) GBM                          221
                                 clus
vv                                AMP PEAK 27(19P13.3) WILD-TYPE
  ASTROCYTOMA                                                168
  GLIOBLASTOMA MULTIFORME (GBM)                               17
  OLIGOASTROCYTOMA                                           100
  OLIGODENDROGLIOMA                                          115
  TREATED PRIMARY GBM                                          8
  UNTREATED PRIMARY (DE NOVO) GBM                            304
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 27(19P13.3) MUTATED                                  0    10
  AMP PEAK 27(19P13.3) WILD-TYPE                                1    11
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 27(19P13.3) MUTATED                          28   325
  AMP PEAK 27(19P13.3) WILD-TYPE                        43   634
D27V8, multiclass
                                  clus
vv                                 AMP PEAK 27(19P13.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  28
  WHITE                                                     325
                                  clus
vv                                 AMP PEAK 27(19P13.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        11
  BLACK OR AFRICAN AMERICAN                                    43
  WHITE                                                       634
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V9, binary
                                cls
clus                               0   1
  AMP PEAK 27(19P13.3) MUTATED    17 314
  AMP PEAK 27(19P13.3) WILD-TYPE  27 607
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(19P13.3) MUTATED     17  314
  AMP PEAK 27(19P13.3) WILD-TYPE   27  607
                        clus
vv                       AMP PEAK 27(19P13.3) MUTATED
  HISPANIC OR LATINO                               17
  NOT HISPANIC OR LATINO                          314
                        clus
vv                       AMP PEAK 27(19P13.3) WILD-TYPE
  HISPANIC OR LATINO                                 27
  NOT HISPANIC OR LATINO                            607
[1] 2 2
[1] FALSE

Clustering(28) Variable = AMP PEAK 28(19Q12) MUTATION ANALYSIS
D28V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 28(19Q12) MUTATED    52 192
  AMP PEAK 28(19Q12) WILD-TYPE 428 406
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                         244                          834 
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                         192                          406 
$`AMP PEAK 28(19Q12) MUTATED`
TCGA-19-A6J4 TCGA-FG-A87N TCGA-06-1806 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        3.98        18.64        15.32         8.98         8.55         6.71 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6699 TCGA-06-A6S0 TCGA-12-1598 TCGA-12-1599 
        5.23         8.32         1.55         3.12        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       14.73         6.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1402 
       34.92        14.53        13.78        26.33        15.95        32.05 
TCGA-14-1450 TCGA-14-1454 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       58.78        30.18        17.85         7.17        17.49         7.96 
TCGA-16-0848 TCGA-16-1055 TCGA-16-1062 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
       17.59        10.29        21.24         3.65         7.17         3.25 
TCGA-19-2620 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 TCGA-19-A6J5 
        4.87        17.19         8.02         4.73         1.78        28.54 
TCGA-26-1799 TCGA-27-1833 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 
        9.37        24.23        24.76        18.08        16.77         7.59 
TCGA-27-2528 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-2502 
       15.78         9.21         7.63         8.48         1.22         0.66 
TCGA-28-2506 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 
        6.74        15.39         0.10        15.85        19.50         4.67 
TCGA-32-1987 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-5222 
       14.86        15.02         8.84        25.18        21.14        19.23 
TCGA-41-2572 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9R 
       13.35         4.44        11.84         0.20        15.12         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6578 TCGA-76-4934 TCGA-76-6656 TCGA-76-6661 
        1.45        25.58        14.33         2.53         4.83        23.90 
TCGA-76-6663 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-5395 TCGA-CS-6186 TCGA-CS-6188 
       18.64         6.28        20.55        21.01        17.69        26.76 
TCGA-DH-5142 TCGA-DU-5854 TCGA-DU-6402 TCGA-DU-6406 TCGA-DU-A76K TCGA-DU-A7TJ 
       63.88         8.45         7.04        16.83        11.41         0.56 
TCGA-E1-5304 TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YU TCGA-FG-6692 TCGA-FG-7643 
       41.13        19.46        16.18         0.76        18.44        20.09 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-HT-7472 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8104 
       10.72        18.38         0.03         0.49         3.72        12.23 
TCGA-KT-A7W1 TCGA-P5-A72U TCGA-QH-A6CV TCGA-QH-A6XC TCGA-S9-A6TV TCGA-S9-A6WM 
       14.40         0.23        14.53        16.70        18.77        19.86 
TCGA-TM-A7C3 TCGA-TQ-A7RP TCGA-06-0209 TCGA-02-0007 TCGA-02-0009 TCGA-02-0015 
       54.77        30.05         7.63        23.18        10.59        20.61 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       77.65        20.12        42.74         3.62        10.72        18.31 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        6.54        19.86        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0089 TCGA-02-0102 TCGA-02-0106 
       10.19        20.84        89.72        16.96        27.02        11.67 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       23.18        92.65        48.95        16.93        17.72        10.75 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0333 TCGA-02-0430 TCGA-02-2485 
       13.87        14.20        15.95         4.37        10.55        15.45 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0137 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
       26.70         2.33        17.79        10.09        19.46        46.59 
TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 
       12.33        10.45         3.19        10.82         9.44        56.91 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
        4.47         3.22         4.18        20.25         3.65        73.84 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0211 
       10.42        38.96         0.39         7.66         8.42        11.84 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       24.16        13.64        10.82         0.26        72.36         4.70 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
       35.11         5.75        23.57        26.40        46.88         2.70 
TCGA-06-0879 TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-2563 TCGA-06-2565 
       40.41         6.84         4.04        15.32        30.64        16.64 
TCGA-08-0246 TCGA-08-0347 TCGA-08-0349 TCGA-08-0352 TCGA-08-0355 TCGA-08-0356 
        4.18        25.71         9.80         1.28        24.56        31.10 
TCGA-08-0375 TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       12.23        18.02        13.97        12.56         4.27        11.08 
TCGA-08-0518 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0670 
       19.33         7.27        15.98        18.41         7.56        25.97 
TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0778 
       26.66        20.38        28.41        15.06        53.85        14.93 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0826 TCGA-12-0829 TCGA-12-1094 TCGA-12-1095 
       14.86        24.79        27.78        20.58        12.23        15.85 
TCGA-12-1099 TCGA-14-0789 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-15-1446 
        4.14        11.24         5.39         2.04        28.93        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 TCGA-19-1386 TCGA-26-5139 TCGA-28-2513 
       13.28         3.91        11.77         9.07         1.58         7.30 
TCGA-28-2514 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
        5.26        17.88        14.53        23.44        13.64         5.16 
TCGA-76-6280 TCGA-76-6660 TCGA-81-5911 TCGA-87-5896 
       11.38         3.75        17.72        26.30 

$`AMP PEAK 28(19Q12) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 
       21.40        45.60        42.77        59.38        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.35         4.54         8.81         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
        4.57        12.85         4.77         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 
        1.87         2.56        14.60        17.72        15.35        21.73 
TCGA-12-3644 TCGA-12-3646 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       59.77        44.02        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0812 TCGA-14-0862 
       11.97         0.95         6.21        23.05         3.25         2.89 
TCGA-14-0865 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 
       16.50         1.38         1.12         3.75        23.11         7.10 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        1.15         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3477 TCGA-14-4157 
        1.97        17.79         7.63         5.88         3.78         3.42 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 
       29.03         4.57        14.01         9.14        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1787 TCGA-19-1791 
        8.61        14.27         3.39        25.38        12.66         0.13 
TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 TCGA-19-5954 TCGA-19-5956 
        7.00         7.04         6.64        18.90        12.10        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 
       14.07        16.80        14.96        17.79        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        9.73         7.13         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
        5.06        16.60         9.86        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-28-1746 
       14.04        11.51        16.08         2.86        14.40         0.20 
TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2509 
        2.53         8.35         1.55         2.83         0.13         4.77 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       21.07         0.49         1.18        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       20.78        15.95        22.78         3.72        12.59        19.86 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-6646 
       10.85         0.85         8.94         9.53         0.99        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.17        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 
        3.29         2.70        17.06         8.35        20.98         5.03 
TCGA-76-6662 TCGA-76-6664 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       34.45        36.20         5.92       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 
       36.36        60.10        40.18         0.26        53.62         6.38 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       37.38        46.95        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       30.74        16.18        19.96        46.06        24.59        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
       13.38         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       65.75         1.22        87.45        11.64       133.74        19.89 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L 
       25.55        21.57        95.11        20.98        22.29        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42        38.89        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YM TCGA-E1-A7YO 
       29.13        93.21         3.65        12.43        21.30        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       51.88        15.32        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       42.54        41.33        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       32.61        38.27        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       48.69         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.13        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 
       39.48        19.23        39.09         0.23        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
        0.10        37.87        33.01         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.14        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        68.32        69.27        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54        24.92        31.63        12.76        28.87        20.71 
TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       19.00        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         9.44         5.88         7.96         7.59         1.28 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       62.17        87.12        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 
       98.63        31.59        18.71        20.48        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       31.20        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        45.93        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0001 TCGA-02-0003 
       45.80        46.88        37.71        20.81        11.77         4.73 
TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0024 
       18.35        35.41        20.71        82.59        87.06        53.10 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 
       24.59        12.16        90.58         2.83        14.14        10.52 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 
        6.87        14.73         3.22        15.09        12.59         2.50 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 TCGA-02-0079 TCGA-02-0083 
        8.35         9.57         6.02        28.70        27.25        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0099 TCGA-02-0104 
       12.62        51.32         8.81        57.76         3.48        65.00 
TCGA-02-0107 TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 TCGA-02-0271 TCGA-02-0281 
       17.65        99.98        15.65        16.54        14.47         3.98 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 
       25.71        25.12        10.59        12.39        14.50        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.27        16.21         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2486 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       15.32        20.32        22.72        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       14.30        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0149 TCGA-06-0154 TCGA-06-0160 TCGA-06-0162 
       11.74        20.09         8.61        13.94        11.80         3.42 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0175 
       10.65         5.85        19.66         3.29        13.12         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
       91.00        88.14        69.90        27.22        44.58        15.42 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        4.67         7.40         5.56         7.40         0.53        15.02 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 
        0.72        19.82        13.32        20.42        48.69         9.01 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        9.57         3.16        12.62         5.75         9.80         2.10 
TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
       14.20         7.86         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 
        7.17        16.57        20.78        26.76        23.93        26.79 
TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       11.84        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       17.65        12.56         5.95         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
       31.50         7.79         5.39       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0350 
       37.84       115.86         1.74         8.42        12.16        29.23 
TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       65.33         8.42        17.95        37.58        22.29         3.39 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
       14.93        15.35         0.72        42.15        19.59        58.68 
TCGA-08-0520 TCGA-08-0521 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       10.75         4.80        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 
        7.59        94.78         0.10        38.17        12.13         3.65 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 
       43.23         7.63         9.73        91.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       23.51        38.76         8.94       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 
       33.21        15.98         9.11        14.53         3.98         2.24 
TCGA-14-0813 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 
        1.35        19.30         0.79        13.78        50.53        53.19 
TCGA-16-0849 TCGA-16-0850 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1387 
       26.07        16.37        21.90         0.66        10.75         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-6173 
       12.95         4.64        31.33        14.86         5.49         7.92 
TCGA-26-6174 TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 
        2.33        14.93        11.28        11.77        31.27        11.01 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6283 TCGA-81-5910 
       22.68        12.76         5.42         7.36         5.42         1.61 

  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                        0.03                         0.07 
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                       92.65                       211.17 
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                      14.465                       16.800 
[1] "0.0 - 92.7 (14.5)"  "0.1 - 211.2 (16.8)"
[1] "hr=" "2.4"
D28V2, continuous
D28V3, binary
                              cls
clus                             0   1
  AMP PEAK 28(19Q12) MUTATED   215  31
  AMP PEAK 28(19Q12) WILD-TYPE 358 481
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 28(19Q12) MUTATED    215   31
  AMP PEAK 28(19Q12) WILD-TYPE  358  481
                        clus
vv                       AMP PEAK 28(19Q12) MUTATED
  BRAIN                                         215
  CENTRAL NERVOUS SYSTEM                         31
                        clus
vv                       AMP PEAK 28(19Q12) WILD-TYPE
  BRAIN                                           358
  CENTRAL NERVOUS SYSTEM                          481
[1] 2 2
[1] FALSE
D28V4, binary
                              cls
clus                             0   1
  AMP PEAK 28(19Q12) MUTATED    97 149
  AMP PEAK 28(19Q12) WILD-TYPE 356 483
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 28(19Q12) MUTATED     97  149
  AMP PEAK 28(19Q12) WILD-TYPE  356  483
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  FEMALE                         97                          356
  MALE                          149                          483
[1] 2 2
[1] FALSE
D28V5, binary
                              cls
clus                             0   1
  AMP PEAK 28(19Q12) MUTATED    28 202
  AMP PEAK 28(19Q12) WILD-TYPE 230 568
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 28(19Q12) MUTATED     28  202
  AMP PEAK 28(19Q12) WILD-TYPE  230  568
     clus
vv    AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  NO                          28                          230
  YES                        202                          568
[1] 2 2
[1] FALSE
D28V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 28(19Q12) MUTATED            16                            14
  AMP PEAK 28(19Q12) WILD-TYPE         178                            16
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 28(19Q12) MUTATED                  9                 6
  AMP PEAK 28(19Q12) WILD-TYPE              120               183
                              vv
clus                           TREATED PRIMARY GBM
  AMP PEAK 28(19Q12) MUTATED                     8
  AMP PEAK 28(19Q12) WILD-TYPE                  10
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 28(19Q12) MUTATED                               193
  AMP PEAK 28(19Q12) WILD-TYPE                             332
D28V7, multiclass
                                 clus
vv                                AMP PEAK 28(19Q12) MUTATED
  ASTROCYTOMA                                             16
  GLIOBLASTOMA MULTIFORME (GBM)                           14
  OLIGOASTROCYTOMA                                         9
  OLIGODENDROGLIOMA                                        6
  TREATED PRIMARY GBM                                      8
  UNTREATED PRIMARY (DE NOVO) GBM                        193
                                 clus
vv                                AMP PEAK 28(19Q12) WILD-TYPE
  ASTROCYTOMA                                              178
  GLIOBLASTOMA MULTIFORME (GBM)                             16
  OLIGOASTROCYTOMA                                         120
  OLIGODENDROGLIOMA                                        183
  TREATED PRIMARY GBM                                       10
  UNTREATED PRIMARY (DE NOVO) GBM                          332
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 28(19Q12) MUTATED                                  0     8
  AMP PEAK 28(19Q12) WILD-TYPE                                1    13
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 28(19Q12) MUTATED                          23   207
  AMP PEAK 28(19Q12) WILD-TYPE                        48   752
D28V8, multiclass
                                  clus
vv                                 AMP PEAK 28(19Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     8
  BLACK OR AFRICAN AMERICAN                                23
  WHITE                                                   207
                                  clus
vv                                 AMP PEAK 28(19Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      13
  BLACK OR AFRICAN AMERICAN                                  48
  WHITE                                                     752
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V9, binary
                              cls
clus                             0   1
  AMP PEAK 28(19Q12) MUTATED     8 208
  AMP PEAK 28(19Q12) WILD-TYPE  36 713
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 28(19Q12) MUTATED      8  208
  AMP PEAK 28(19Q12) WILD-TYPE   36  713
                        clus
vv                       AMP PEAK 28(19Q12) MUTATED
  HISPANIC OR LATINO                              8
  NOT HISPANIC OR LATINO                        208
                        clus
vv                       AMP PEAK 28(19Q12) WILD-TYPE
  HISPANIC OR LATINO                               36
  NOT HISPANIC OR LATINO                          713
[1] 2 2
[1] FALSE

Clustering(29) Variable = AMP PEAK 29(19Q13.2) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 29(19Q13.2) MUTATED    52 176
  AMP PEAK 29(19Q13.2) WILD-TYPE 428 422
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                           228                            850 
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                           176                            422 
$`AMP PEAK 29(19Q13.2) MUTATED`
TCGA-FG-A87N TCGA-06-1806 TCGA-06-5414 TCGA-06-5415 TCGA-06-6388 TCGA-06-6695 
       18.64        15.32         8.98         8.55         5.23         8.32 
TCGA-06-6698 TCGA-06-6699 TCGA-06-A6S0 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        4.77         1.55         3.12        25.68        14.73         6.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-14-0783 
       26.93        15.22        10.95        34.92        14.53         6.21 
TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1402 TCGA-14-1450 
       13.78        26.33        15.95         1.38        32.05        58.78 
TCGA-14-1454 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
       30.18        17.85         7.17        17.49         7.96         3.78 
TCGA-16-0848 TCGA-16-1055 TCGA-16-1062 TCGA-19-1789 TCGA-19-2620 TCGA-19-5950 
       17.59        10.29        21.24         3.25         4.87        17.19 
TCGA-19-5953 TCGA-19-5955 TCGA-19-A6J5 TCGA-26-1799 TCGA-27-1833 TCGA-27-2518 
        4.73         1.78        28.54         9.37        24.23        24.76 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       16.77        16.08         7.59         9.21         7.63         8.48 
TCGA-28-2502 TCGA-28-2506 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        0.66         6.74        15.39         0.10        15.85        19.50 
TCGA-32-1982 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-5222 TCGA-41-2572 
        4.67        15.02         8.84        25.18        19.23        13.35 
TCGA-41-3393 TCGA-41-3915 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6578 
        4.44        11.84         4.08         1.45        25.58        14.33 
TCGA-76-4934 TCGA-76-6656 TCGA-76-6661 TCGA-76-6663 TCGA-RR-A6KA TCGA-RR-A6KC 
        2.53         4.83        23.90        18.64         6.28        20.55 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5395 TCGA-CS-6186 TCGA-CS-6188 TCGA-DU-5854 
       43.89        60.10        21.01        17.69        26.76         8.45 
TCGA-DU-6402 TCGA-DU-6406 TCGA-DU-A76K TCGA-DU-A7TJ TCGA-E1-A7YJ TCGA-FG-6692 
        7.04        16.83        11.41         0.56        19.46        18.44 
TCGA-FG-7643 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-HT-7689 TCGA-HT-7860 TCGA-HT-7882 
       20.09        10.72        18.38        14.96         0.49         3.72 
TCGA-HT-8104 TCGA-HT-A5RA TCGA-KT-A7W1 TCGA-P5-A72U TCGA-QH-A6CV TCGA-QH-A6XC 
       12.23        27.35        14.40         0.23        14.53        16.70 
TCGA-S9-A6WM TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TQ-A7RP TCGA-06-0209 
       19.86        18.71        54.77        24.92        30.05         7.63 
TCGA-02-0009 TCGA-02-0015 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0037 
       10.59        20.61        77.65        20.12        42.74         3.62 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0051 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 
       10.72        18.31        15.09        19.86        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0102 
       25.05         5.49        10.19        20.84        89.72        27.02 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 
       11.67        23.18        92.65        48.95        16.93        17.72 
TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0430 TCGA-02-2485 
       10.75        13.87        14.20        15.95        10.55        15.45 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0137 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
       26.70         2.33        17.79        10.09        19.46        46.59 
TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 
       12.33        10.45         3.19        10.82         9.44        56.91 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        4.47         3.22         4.04         4.18        20.25         3.65 
TCGA-06-0185 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       73.84        10.42        38.96         0.39         7.66         8.42 
TCGA-06-0211 TCGA-06-0216 TCGA-06-0237 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 
       11.84        24.16        13.64        10.82         0.26        72.36 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 
        4.70        35.11         5.75        23.57        26.40        46.88 
TCGA-06-0879 TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-2563 TCGA-06-2565 
       40.41         6.84         4.04        15.32        30.64        16.64 
TCGA-08-0246 TCGA-08-0347 TCGA-08-0352 TCGA-08-0355 TCGA-08-0356 TCGA-08-0375 
        4.18        25.71         1.28        24.56        31.10        12.23 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0524 TCGA-08-0525 
       13.97        12.56         4.27        11.08         7.27        15.98 
TCGA-08-0529 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 
       18.41        25.97        26.66        12.13        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0826 
       15.06        53.85        14.93        14.86        24.79        27.78 
TCGA-12-0829 TCGA-12-1094 TCGA-12-1099 TCGA-14-0789 TCGA-14-0817 TCGA-14-0867 
       20.58        12.23         4.14        11.24         5.39         2.04 
TCGA-14-0871 TCGA-15-1446 TCGA-16-0846 TCGA-19-0955 TCGA-19-1386 TCGA-26-5133 
       28.93        19.10         3.91        11.77         9.07        14.86 
TCGA-26-5139 TCGA-28-2513 TCGA-28-2514 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 
        1.58         7.30         5.26        17.88        14.53        23.44 
TCGA-28-5216 TCGA-28-5218 TCGA-28-6450 TCGA-76-6280 TCGA-81-5911 TCGA-87-5896 
       13.64         5.16         5.42        11.38        17.72        26.30 

$`AMP PEAK 29(19Q13.2) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 
       20.45        21.40        45.60        42.77        59.38        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 TCGA-06-5418 
        3.55         8.35         4.54         8.81         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6697 TCGA-06-6700 TCGA-06-6701 
        3.75         6.15         4.57        12.85         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
       26.79         1.87         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 TCGA-12-3651 TCGA-12-5295 
       21.73        15.65        59.77        44.02        12.69        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
        3.22         2.04        15.12        11.97         0.95        23.05 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 
        3.25         2.89        16.50         1.12         3.75        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10         1.15         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-4157 
        0.99         1.97        17.79         7.63         5.88         3.42 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 
       29.03         4.57        14.01         9.14        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        8.61        14.27         3.39        25.38         3.65         7.17 
TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
       12.66         0.13         9.67         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 
        4.08        24.23         7.00         7.04         6.64         8.02 
TCGA-19-5952 TCGA-19-5954 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       18.90        12.10        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-5132 
       17.79        10.03        13.87         9.73         7.13         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 
       40.54        21.30        30.05        14.04        11.51        18.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 
        2.86        14.40        15.78         0.20         2.53         8.35 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2509 TCGA-32-1973 
        1.22         1.55         2.83         0.13         4.77        21.07 
TCGA-32-1976 TCGA-32-1980 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        0.49         1.18        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
       20.78        15.95        22.78        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.86        10.85         0.85         8.94         9.53         0.99 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        9.17        36.85        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 TCGA-76-6664 TCGA-OX-A56R 
        8.35        20.98         5.03        34.45        36.20         5.92 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 
      117.50         7.69        36.36        40.18         0.26        53.62 
TCGA-CS-5397 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
        6.38        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       17.46         6.74        13.38         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 
       75.16        46.06        65.75         1.22        87.45        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
      133.74        19.89        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 
       10.36         7.96        94.32        18.94        44.02        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       22.29        26.76        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 
       51.52        37.38         7.50        44.42        38.89        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       12.43        16.18        21.30        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 
       41.33        15.35        17.88        22.55        20.61        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       13.68        14.24        16.01        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       38.27        18.71        23.70        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 
       44.68         6.05        42.74         0.10        31.69         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 
       19.23        39.09         0.23        50.63        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
        0.33         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       37.87        33.01         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       31.63        12.76        28.87        20.71        19.00        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X 
        5.88         7.96         7.59         1.28        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 
       16.34        16.73         1.91        16.50        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       31.59        20.48        48.33        49.32        34.78        65.39 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        36.69        33.73        31.20        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        45.93        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 
       20.81        11.77         4.73        18.35        23.18        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 
       20.71        82.59        87.06        53.10        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 
       90.58         2.83        14.14        10.52         6.87        14.73 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 
        3.22        12.59         6.54         2.50         8.35         9.57 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        6.02        28.70        27.25        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 TCGA-02-0107 
        8.81        57.76        16.96         3.48        65.00        17.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 
       99.98        15.65        16.54        14.47         3.98        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 
        4.37        25.12        10.59        12.39        14.50        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.27        16.21         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2486 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       15.32        20.32        22.72        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       14.30        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0149 TCGA-06-0154 TCGA-06-0160 TCGA-06-0162 
       11.74        20.09         8.61        13.94        11.80         3.42 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0176 
       10.65         5.85        19.66         3.29        13.12        91.00 
TCGA-06-0178 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 
       88.14        69.90        27.22        44.58        15.42         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        7.40         5.56         7.40         0.53        15.02         0.72 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 TCGA-06-0412 
       19.82        13.32        20.42        48.69         9.01         9.57 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 
        3.16        12.62         5.75         9.80         2.10        14.20 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 
        7.17        16.57        20.78        26.76        23.93        26.79 
TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       11.84        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       17.65        12.56         5.95         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
       31.50         7.79         5.39       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 
       37.84       115.86         1.74         8.42        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 
       29.23        65.33         8.42        17.95        37.58        22.29 
TCGA-08-0359 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 
        3.39        14.93        18.02        15.35         0.72        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0531 
       19.59        58.68        19.33        10.75         4.80         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
        0.10        38.17         3.65        43.23         7.63         9.73 
TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       91.76        18.48        10.62        23.51        38.76         8.94 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1095 
      127.59         5.82         7.59        33.21        15.98        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0813 TCGA-14-1037 
        9.11        14.53         3.98         2.24         1.35        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 
        0.79        13.78        50.53        53.19        13.28        26.07 
TCGA-16-0850 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1387 TCGA-19-1388 
       16.37        21.90         0.66        10.75         5.95        12.95 
TCGA-19-1389 TCGA-26-1442 TCGA-26-5134 TCGA-26-6173 TCGA-26-6174 TCGA-28-5204 
        4.64        31.33         5.49         7.92         2.33        14.93 
TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 
       11.28        11.77        31.27        11.01        22.68        12.76 
TCGA-32-2616 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        7.36         5.42         3.75         1.61 

  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                         92.65                         211.17 
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                        14.530                         16.585 
[1] "0.1 - 92.7 (14.5)"  "0.0 - 211.2 (16.6)"
[1] "hr=" "2.2"
D29V2, continuous
D29V3, binary
                                cls
clus                               0   1
  AMP PEAK 29(19Q13.2) MUTATED   199  31
  AMP PEAK 29(19Q13.2) WILD-TYPE 374 481
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19Q13.2) MUTATED    199   31
  AMP PEAK 29(19Q13.2) WILD-TYPE  374  481
                        clus
vv                       AMP PEAK 29(19Q13.2) MUTATED
  BRAIN                                           199
  CENTRAL NERVOUS SYSTEM                           31
                        clus
vv                       AMP PEAK 29(19Q13.2) WILD-TYPE
  BRAIN                                             374
  CENTRAL NERVOUS SYSTEM                            481
[1] 2 2
[1] FALSE
D29V4, binary
                                cls
clus                               0   1
  AMP PEAK 29(19Q13.2) MUTATED    90 140
  AMP PEAK 29(19Q13.2) WILD-TYPE 363 492
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19Q13.2) MUTATED     90  140
  AMP PEAK 29(19Q13.2) WILD-TYPE  363  492
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  FEMALE                           90                            363
  MALE                            140                            492
[1] 2 2
[1] FALSE
D29V5, binary
                                cls
clus                               0   1
  AMP PEAK 29(19Q13.2) MUTATED    27 189
  AMP PEAK 29(19Q13.2) WILD-TYPE 231 581
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19Q13.2) MUTATED     27  189
  AMP PEAK 29(19Q13.2) WILD-TYPE  231  581
     clus
vv    AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  NO                            27                            231
  YES                          189                            581
[1] 2 2
[1] FALSE
D29V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 29(19Q13.2) MUTATED            18                            12
  AMP PEAK 29(19Q13.2) WILD-TYPE         176                            18
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 29(19Q13.2) MUTATED                  7                 6
  AMP PEAK 29(19Q13.2) WILD-TYPE              122               183
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 29(19Q13.2) MUTATED                     6
  AMP PEAK 29(19Q13.2) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 29(19Q13.2) MUTATED                               181
  AMP PEAK 29(19Q13.2) WILD-TYPE                             344
D29V7, multiclass
                                 clus
vv                                AMP PEAK 29(19Q13.2) MUTATED
  ASTROCYTOMA                                               18
  GLIOBLASTOMA MULTIFORME (GBM)                             12
  OLIGOASTROCYTOMA                                           7
  OLIGODENDROGLIOMA                                          6
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          181
                                 clus
vv                                AMP PEAK 29(19Q13.2) WILD-TYPE
  ASTROCYTOMA                                                176
  GLIOBLASTOMA MULTIFORME (GBM)                               18
  OLIGOASTROCYTOMA                                           122
  OLIGODENDROGLIOMA                                          183
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            344
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 29(19Q13.2) MUTATED                                  0     7
  AMP PEAK 29(19Q13.2) WILD-TYPE                                1    14
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 29(19Q13.2) MUTATED                          23   193
  AMP PEAK 29(19Q13.2) WILD-TYPE                        48   766
D29V8, multiclass
                                  clus
vv                                 AMP PEAK 29(19Q13.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       7
  BLACK OR AFRICAN AMERICAN                                  23
  WHITE                                                     193
                                  clus
vv                                 AMP PEAK 29(19Q13.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        14
  BLACK OR AFRICAN AMERICAN                                    48
  WHITE                                                       766
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V9, binary
                                cls
clus                               0   1
  AMP PEAK 29(19Q13.2) MUTATED     7 189
  AMP PEAK 29(19Q13.2) WILD-TYPE  37 732
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(19Q13.2) MUTATED      7  189
  AMP PEAK 29(19Q13.2) WILD-TYPE   37  732
                        clus
vv                       AMP PEAK 29(19Q13.2) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          189
                        clus
vv                       AMP PEAK 29(19Q13.2) WILD-TYPE
  HISPANIC OR LATINO                                 37
  NOT HISPANIC OR LATINO                            732
[1] 2 2
[1] FALSE

Clustering(30) Variable = AMP PEAK 30(XP11.21) MUTATION ANALYSIS
D30V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 30(XP11.21) MUTATED    63  41
  AMP PEAK 30(XP11.21) WILD-TYPE 417 557
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                           104                            974 
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                            41                            557 
$`AMP PEAK 30(XP11.21) MUTATED`
TCGA-CS-6665 TCGA-DH-A66B TCGA-FG-A713 TCGA-06-6698 TCGA-06-A7TL TCGA-14-1455 
       51.55        42.05        20.45         4.77        17.72         0.92 
TCGA-19-5947 TCGA-26-1440 TCGA-26-1799 TCGA-32-1973 TCGA-32-2632 TCGA-32-4210 
        6.64         9.73         9.37        21.07         8.84         3.72 
TCGA-CS-4938 TCGA-CS-6667 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A75L TCGA-DH-5142 
      117.50        48.30        50.86        78.28        11.24        63.88 
TCGA-DU-5871 TCGA-DU-6396 TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6542 TCGA-DU-7007 
       18.94        75.16        87.45        94.52         2.40        62.96 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A5TT 
       14.99       117.40        15.48        33.27        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-E1-5302 TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5322 
       26.17        24.99        50.14        57.93        78.21       130.78 
TCGA-E1-A7YK TCGA-E1-A7Z4 TCGA-FG-7636 TCGA-FG-8185 TCGA-FG-A4MY TCGA-HT-7476 
       12.43       145.05        17.88        14.24        23.70         6.54 
TCGA-HT-7477 TCGA-HT-7609 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7855 TCGA-HT-7857 
       24.26        45.99        31.69        14.96        19.23         0.23 
TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8563 TCGA-HT-A616 
       31.43        63.55        12.23         0.10        28.27         1.81 
TCGA-HT-A618 TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7493 TCGA-HW-8321 TCGA-P5-A5EZ 
       16.83        10.52         0.10        69.27        42.54         2.30 
TCGA-P5-A72W TCGA-P5-A733 TCGA-QH-A65S TCGA-QH-A6CV TCGA-S9-A6TS TCGA-S9-A7IZ 
       10.42        13.61         2.53        14.53        62.17        19.99 
TCGA-S9-A7QX TCGA-S9-A89V TCGA-TM-A84Q TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RV 
       18.54        18.71        25.38        40.41        44.09        61.41 
TCGA-VM-A8C8 TCGA-VM-A8CF TCGA-VV-A86M TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85B 
       45.93        20.02        16.01        43.96        39.88        45.80 
TCGA-WY-A85E TCGA-02-0010 TCGA-02-0011 TCGA-02-0051 TCGA-02-0058 TCGA-02-0266 
       20.81        35.41        20.71        15.09         8.35        17.72 
TCGA-02-0271 TCGA-02-0333 TCGA-02-2483 TCGA-06-0151 TCGA-06-0159 TCGA-06-0162 
       14.47         4.37        15.32        46.59         9.44         3.42 
TCGA-06-0221 TCGA-06-0743 TCGA-06-0875 TCGA-06-1801 TCGA-06-2564 TCGA-06-2570 
       19.82        26.40        43.46        11.84         5.95        31.50 
TCGA-08-0355 TCGA-12-0773 TCGA-12-1090 TCGA-12-1098 TCGA-14-0871 TCGA-19-1388 
       24.56        43.23         7.59         3.98        28.93        12.95 
TCGA-28-5209 TCGA-28-5218 
       14.53         5.16 

$`AMP PEAK 30(XP11.21) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-7300 
        1.48         3.98        46.88        46.72        31.82        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A87N TCGA-HT-A619 
       17.16        23.90        20.09        17.82        18.64        21.40 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
       45.60        42.77        59.38        15.32        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        2.73         3.75         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
       12.85         1.55         4.77         4.96        26.79         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 
        3.12         2.56        14.60        15.35        21.73        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       23.05        13.78         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10         1.15        30.18        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       17.59        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
       21.24        13.97         6.41         8.61        14.27         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       24.23         7.00         7.04        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1443 
       14.96        17.79        28.54        10.03        13.87         7.13 
TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        9.40         8.88        18.97        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        16.77        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 
        0.13         0.66         6.74         4.77        15.39         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.86        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        25.18        21.14        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R 
        4.44        11.84         0.20        15.12        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        1.45        25.58         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01        53.62         6.38        17.69        26.76        37.38 
TCGA-CS-6666 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       46.95        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 
       47.93        72.92        91.13        44.52        36.56        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5143 TCGA-DH-5144 
       17.88        30.74        16.18        19.96        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 
        6.74        13.38         8.45         6.81       182.33        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 
       15.16       211.17        52.11        22.42        49.02        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       65.75         1.22         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 
       16.83       114.08         7.96        11.47       156.23       154.36 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 
       10.36         7.96        94.32        18.94        44.02        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 
       14.60        20.68        21.40        19.13        16.96        14.17 
TCGA-DU-A5TR TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       29.85        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       22.29        11.41        26.76        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5319 
        0.56        67.46        41.13        79.99       134.27        95.57 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YL 
       14.30        29.13        93.21         3.65        19.46        16.18 
TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       21.30        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z6 TCGA-EZ-7264 
       36.82       146.14        13.08        73.48        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 
       22.55        20.61        20.09        28.34        13.68        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       18.71        14.76        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 
       28.54        10.78        36.66        48.69         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       16.54         3.75        17.42         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 
        0.76        44.68         6.05        42.74         0.10         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       39.09        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
        1.64        16.24         9.40         0.10        37.87        33.01 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        6.25         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       29.59        34.19        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K 
       16.93        16.14        17.52        17.65         2.43        15.35 
TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7495 
       11.05        56.58        45.44        41.49        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       39.75        40.01        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        19.00        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        7.99         2.37         9.44         5.88         7.96         7.59 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        1.28         0.23        13.25        11.64        10.95         9.01 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
        4.41        15.16        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        13.61        12.23        13.41         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY 
       20.02         8.19         2.04        20.68        15.06        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R 
       28.08        24.16        40.83        24.79        33.24        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       33.93        26.99        31.36        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VW-A7QS TCGA-VW-A8FI 
        7.89        39.16        23.47        37.05        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-06-0209 
       51.06        13.32        43.40        46.88        37.71         7.63 
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 
       11.77         4.73        18.35        23.18        10.59        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54         2.50        19.86         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 
       48.95        16.54        16.93        10.75         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        15.91        25.71        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       33.67        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        17.79        10.09         8.61        19.46        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0164 
       13.94        10.45         3.19        10.82        11.80        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.82         9.01         0.26        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        14.20        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        2.70         0.92        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       20.78        26.76        23.93         6.84         4.04        26.79 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       15.32        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       17.65        12.56        30.64        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
        0.43         7.79         5.39       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       17.95        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       14.93        18.02        15.35        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        4.27        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 
       20.38        28.41        15.06        53.85         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        5.82        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 
       14.53         4.14         2.24        11.24         1.35         5.39 
TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        2.04        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 
       53.19        13.28         3.91        26.07        16.37        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       21.90         0.66        10.75         9.07         5.95         4.64 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
       31.33        14.86         5.49         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 
        7.30         5.26        14.93        11.28        17.88        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01        13.64        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        5.42         7.36        11.38         5.42         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                        145.05                         211.17 
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                        20.235                         15.650 
[1] "0.1 - 145.1 (20.2)" "0.0 - 211.2 (15.7)"
[1] "hr=" "1.9"
D30V2, continuous
D30V3, binary
                                cls
clus                               0   1
  AMP PEAK 30(XP11.21) MUTATED    34  70
  AMP PEAK 30(XP11.21) WILD-TYPE 539 442
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 30(XP11.21) MUTATED     34   70
  AMP PEAK 30(XP11.21) WILD-TYPE  539  442
                        clus
vv                       AMP PEAK 30(XP11.21) MUTATED
  BRAIN                                            34
  CENTRAL NERVOUS SYSTEM                           70
                        clus
vv                       AMP PEAK 30(XP11.21) WILD-TYPE
  BRAIN                                             539
  CENTRAL NERVOUS SYSTEM                            442
[1] 2 2
[1] FALSE
D30V4, binary
                                cls
clus                               0   1
  AMP PEAK 30(XP11.21) MUTATED    54  50
  AMP PEAK 30(XP11.21) WILD-TYPE 399 582
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 30(XP11.21) MUTATED     54   50
  AMP PEAK 30(XP11.21) WILD-TYPE  399  582
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  FEMALE                           54                            399
  MALE                             50                            582
[1] 2 2
[1] FALSE
D30V5, binary
                                cls
clus                               0   1
  AMP PEAK 30(XP11.21) MUTATED    14  83
  AMP PEAK 30(XP11.21) WILD-TYPE 244 687
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 30(XP11.21) MUTATED     14   83
  AMP PEAK 30(XP11.21) WILD-TYPE  244  687
     clus
vv    AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  NO                            14                            244
  YES                           83                            687
[1] 2 2
[1] FALSE
D30V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  AMP PEAK 30(XP11.21) MUTATED            44                             3
  AMP PEAK 30(XP11.21) WILD-TYPE         150                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  AMP PEAK 30(XP11.21) MUTATED                 17                 9
  AMP PEAK 30(XP11.21) WILD-TYPE              112               180
                                vv
clus                             TREATED PRIMARY GBM
  AMP PEAK 30(XP11.21) MUTATED                     2
  AMP PEAK 30(XP11.21) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  AMP PEAK 30(XP11.21) MUTATED                                29
  AMP PEAK 30(XP11.21) WILD-TYPE                             496
D30V7, multiclass
                                 clus
vv                                AMP PEAK 30(XP11.21) MUTATED
  ASTROCYTOMA                                               44
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                          17
  OLIGODENDROGLIOMA                                          9
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           29
                                 clus
vv                                AMP PEAK 30(XP11.21) WILD-TYPE
  ASTROCYTOMA                                                150
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           112
  OLIGODENDROGLIOMA                                          180
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            496
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMP PEAK 30(XP11.21) MUTATED                                  0     2
  AMP PEAK 30(XP11.21) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 30(XP11.21) MUTATED                           4    95
  AMP PEAK 30(XP11.21) WILD-TYPE                        67   864
D30V8, multiclass
                                  clus
vv                                 AMP PEAK 30(XP11.21) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   4
  WHITE                                                      95
                                  clus
vv                                 AMP PEAK 30(XP11.21) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    67
  WHITE                                                       864
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V9, binary
                                cls
clus                               0   1
  AMP PEAK 30(XP11.21) MUTATED     9  84
  AMP PEAK 30(XP11.21) WILD-TYPE  35 837
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 30(XP11.21) MUTATED      9   84
  AMP PEAK 30(XP11.21) WILD-TYPE   35  837
                        clus
vv                       AMP PEAK 30(XP11.21) MUTATED
  HISPANIC OR LATINO                                9
  NOT HISPANIC OR LATINO                           84
                        clus
vv                       AMP PEAK 30(XP11.21) WILD-TYPE
  HISPANIC OR LATINO                                 35
  NOT HISPANIC OR LATINO                            837
[1] 2 2
[1] FALSE

Clustering(31) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
D31V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  1(1P36.32) MUTATED   181 130
  DEL PEAK  1(1P36.32) WILD-TYPE 299 468
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           311                            767 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           130                            468 
$`DEL PEAK  1(1P36.32) MUTATED`
TCGA-CS-6670 TCGA-DH-5141 TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       46.88        31.82        62.01        20.09        17.82        20.45 
TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 TCGA-06-5859 TCGA-12-3649 
       21.40        42.77        59.38         8.35         4.57        15.22 
TCGA-12-3651 TCGA-14-0736 TCGA-14-0786 TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 
       12.69        15.12        23.05         2.89        16.50         1.12 
TCGA-14-1451 TCGA-14-1453 TCGA-14-1458 TCGA-14-1821 TCGA-16-1056 TCGA-19-0963 
       23.11         1.15         6.67        17.79        14.01        14.27 
TCGA-19-2619 TCGA-19-2629 TCGA-19-5947 TCGA-19-5950 TCGA-19-5958 TCGA-19-5959 
        9.67        24.23         6.64        17.19        14.07        16.80 
TCGA-27-1833 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1752 TCGA-28-1756 
       24.23        16.77         7.59         8.35         8.48         2.83 
TCGA-28-2502 TCGA-32-1977 TCGA-32-4208 TCGA-41-2572 TCGA-41-2575 TCGA-41-4097 
        0.66         0.10        21.14        13.35         9.53         0.20 
TCGA-74-6575 TCGA-76-4931 TCGA-76-6191 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 
       20.91         9.17        16.70         8.35        20.98         5.03 
TCGA-76-6661 TCGA-OX-A56R TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 
       23.90         5.92         0.26        53.62        49.94        75.25 
TCGA-DB-5275 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH 
       47.93        91.13        44.52        18.84        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U 
       24.20        25.48        30.12         5.98        31.40        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F 
       29.23        14.40        12.10        24.59        30.21        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5870 TCGA-DU-5872 
       54.25        23.21        14.56         6.74       182.33        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 
       15.16        52.11        22.42        75.16        46.06         1.22 
TCGA-DU-6402 TCGA-DU-6405 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7014 
        7.04        19.89         7.96        11.47       154.36       117.40 
TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8164 
       30.67        10.36        94.32        60.30         5.10        21.40 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 
       15.48        14.17        25.55        21.57        95.11        22.29 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TG TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       21.30        17.98        44.42       134.27        78.21        95.57 
TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YY TCGA-EZ-7264 
       19.46        21.30        75.02        15.32       146.14        39.48 
TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 
        0.23        47.77        52.21        18.44        15.35        22.55 
TCGA-FG-7641 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-A6IZ TCGA-FG-A6J1 
       20.61        14.24        16.01        22.52        15.02        16.44 
TCGA-FG-A710 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7477 TCGA-HT-7480 
       36.66         0.10         6.67         0.13        24.26        75.19 
TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 
       95.93         4.57         3.16        22.06         0.23        14.27 
TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 
       16.24        44.68         0.10         2.96         6.90        14.53 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 
       39.09         0.23        37.15         0.33         0.13        35.47 
TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-A4DV 
        1.64         9.40         6.25         5.56        29.59        26.04 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H 
        0.07        27.35        16.93        16.14        17.65         2.43 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 
       15.35        11.05        56.58        45.44        68.32        35.44 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-KT-A74X TCGA-P5-A5EX TCGA-P5-A5F0 TCGA-P5-A5F4 
       24.92        31.63        14.40         7.99         9.44         7.59 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       11.64        10.95         9.01        12.23        19.20         3.45 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU 
        4.41        15.16        12.62        15.85        14.04        14.83 
TCGA-QH-A6CV TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       14.53        13.41         9.17        14.53        16.34        16.73 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       16.70        11.08        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TW TCGA-S9-A6TX 
        5.46        28.08        30.67        62.17        41.10        40.93 
TCGA-S9-A6TY TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       35.38        29.85        32.61       123.65        75.25       135.22 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP 
       38.56        84.99        31.10        19.86        26.47        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       14.07        36.13        23.51         8.19         2.04        20.68 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-TM-A7C5 TCGA-TM-A84G TCGA-TM-A84M 
       28.37        27.16       169.84        49.32        40.64        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RN 
       33.24        18.61        14.93        19.69         2.04        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.20        26.14        33.93        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 TCGA-02-0015 TCGA-02-0023 
       39.16        37.05        23.21        51.06        20.61        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 TCGA-02-0051 TCGA-02-0064 
       53.10        42.74        24.59        90.58        15.09        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0104 TCGA-02-0114 TCGA-02-0115 TCGA-02-0281 
       26.43        28.70        65.00        99.98        15.65         3.98 
TCGA-02-0290 TCGA-02-0446 TCGA-02-2483 TCGA-06-0124 TCGA-06-0126 TCGA-06-0137 
       15.95         9.27        15.32        20.38         6.94        26.70 
TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0171 
       10.82         3.42        56.91         5.85        19.66        13.12 
TCGA-06-0175 TCGA-06-0184 TCGA-06-0195 TCGA-06-0208 TCGA-06-0743 TCGA-06-0745 
        4.04        69.90         7.40         8.42        26.40         7.86 
TCGA-06-0747 TCGA-06-0878 TCGA-06-0879 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 
        2.70         7.17        40.41        23.93         4.04        11.84 
TCGA-06-1802 TCGA-06-2562 TCGA-06-6693 TCGA-08-0244 TCGA-08-0344 TCGA-08-0389 
       15.32        12.56       120.56        22.68       115.86        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0510 TCGA-08-0514 TCGA-08-0517 TCGA-08-0520 
       13.97         0.72         4.27        11.08        58.68        10.75 
TCGA-12-0688 TCGA-12-0820 TCGA-12-0821 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
       26.66        18.48        10.62        33.21        15.98        12.23 
TCGA-12-1095 TCGA-14-0787 TCGA-15-1449 TCGA-19-0962 TCGA-19-1386 TCGA-19-1387 
       15.85         2.24        13.28         0.66         9.07         5.95 
TCGA-28-5211 TCGA-28-5213 TCGA-28-6450 TCGA-76-6660 TCGA-87-5896 
       11.77        31.27         5.42         3.75        26.30 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DH-A66B TCGA-DU-A76O 
        1.48         3.98        51.55        46.72        42.05        17.16 
TCGA-E1-A7YN TCGA-FG-A87N TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
       23.90        18.64        45.60        15.32        11.74         3.55 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        3.75         6.15         5.23         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        1.55         4.77         4.96        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 
        2.56        14.60        17.72        15.35        21.73        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 
       11.97         0.95         6.21        13.78         3.25        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 
       15.95         1.38         3.75        32.05        58.78         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.18         0.92        40.96        12.43         0.99         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.78         3.42        17.59        29.03         4.57        10.29 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 
        9.14        21.24        13.97         6.41         8.61         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
        7.04         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       22.49        14.96        17.79        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 
       19.33         5.06        16.60         9.86        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        18.08        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 
        7.63         1.22         1.55         0.13         6.74         4.77 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.39        21.07         0.49        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 
       15.02        15.95         8.84        22.78        25.18         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
       12.59        19.86        10.85        19.23         0.85         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R 
        0.99         4.44        11.84        15.12        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        1.45        25.58         3.45         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 
        7.50         4.80         4.54         3.09         3.65         2.53 
TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6656 TCGA-76-6662 
       36.85         3.29         2.70        17.06         4.83        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       18.64        36.20         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 
       43.89        36.36        60.10        40.18        21.01         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 
       17.69        26.76        37.38        46.95        48.30        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 
      122.73        81.96        72.92        50.86        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64S 
       46.42        30.21        39.78        37.45        33.57        27.45 
TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU 
       63.88        46.06        27.81        17.19        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       18.61        18.02        17.46        13.38         8.45         6.81 
TCGA-DU-5871 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 
       18.94       211.17        49.02        65.75        87.45        11.64 
TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 
      133.74        16.83        94.52       114.08         2.40        62.96 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      156.23        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 
       26.30         7.96        18.94        44.02        25.91        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 
       41.98         2.76        23.74        14.60        20.68        19.13 
TCGA-DU-8166 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       16.96        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T8 
       24.99        33.96        20.98        11.41        26.76       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TI TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 
       50.14        67.46        41.13        79.99        57.93       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YL 
       14.30        29.13        93.21         3.65        12.43        16.18 
TCGA-E1-A7YQ TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z2 TCGA-E1-A7Z3 
       51.88         0.76        32.45        36.82        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 
      145.05        32.35         0.20        25.48        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 TCGA-FG-7643 TCGA-FG-8181 
       14.93        42.54        41.33        17.88        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       13.68        14.96        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Y 
       18.71        23.70        14.76        21.53        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7470 
       10.78        48.69         5.72        27.52        11.54        40.11 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       40.34       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       23.18       122.47        17.29        45.99        56.09        57.60 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 
        0.16         0.76         6.05        42.74        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 
        0.10         0.10        17.52        39.48        19.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 
        0.49        23.61         3.68         5.33         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       31.43        16.24        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 
       12.23         0.10         0.46         2.50        13.78         0.23 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5R7 
       34.19        28.27        15.72         0.23         0.13        20.22 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B 
        0.10         5.33         2.70         1.81        16.83        17.52 
TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 
       10.52         0.10        41.49        69.27        39.75        40.01 
TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 
       42.54        12.76        28.87        20.71        19.00        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 
        0.23         6.71         2.37         2.30         5.88         7.96 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 TCGA-P5-A735 
        1.28         0.23        10.42        13.25        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A780 TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CW TCGA-QH-A6CX 
        7.56         2.37         2.53        19.33        13.61        12.23 
TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A870 TCGA-RY-A83Z TCGA-RY-A843 
       10.29         1.91        16.50        12.99         9.90         2.07 
TCGA-RY-A845 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       19.59        87.12        18.77        36.82        24.39        25.81 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WO 
       35.15        98.24        95.93         5.85        85.55        18.61 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX 
        7.92        26.93        19.99        20.02        15.06        18.54 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       20.48        54.77        48.33        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        30.44        28.08        24.16        40.83 
TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       25.38        23.80        21.37        15.98        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       36.69        30.05        25.87        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI 
       45.93        43.20        20.02        23.47        16.01         8.05 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       37.71        20.81         7.63        11.77         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 
       23.18        10.59        35.41        20.71        82.59        87.06 
TCGA-02-0021 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       77.65        12.16         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 
       10.52        18.31         6.87        14.73         3.22        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        27.02        11.67        17.65        23.18        92.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       13.87        14.20        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0451 
       12.39        14.50        10.55        47.11        11.34        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0125 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
        6.15        47.61         3.98        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       25.35        14.30        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 TCGA-06-0169 TCGA-06-0173 
        3.19         9.44        11.80        10.65         3.29         4.47 
TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        3.22        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0211 
        4.67         5.56         0.39         7.66         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.53        15.02        24.16         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       72.36         4.70         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0744 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0881 
       46.88         2.70         0.92        43.46        46.19        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1804 TCGA-06-1805 
       20.78        26.76         6.84        26.79        13.61        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 
        1.08        12.49         4.93        17.65        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
       16.64         5.98         4.37         0.43        31.50         7.79 
TCGA-06-6390 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
        5.39         7.36        37.84         4.18         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0509 TCGA-08-0512 
        3.39        12.23        14.93        18.02        12.56        42.15 
TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.59        19.33         4.80         7.27        15.98        18.41 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        7.56        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0691 TCGA-12-0692 
       94.78         0.10        38.17        25.97        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0822 
        9.73        14.93        14.86        91.76        24.79        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0789 
        7.59         9.11        14.53         3.98         4.14        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 
        1.35         5.39         2.04        28.93        19.30         0.79 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 
       13.78        50.53        19.10        53.19         3.91        26.07 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 TCGA-19-1388 TCGA-19-1389 
       16.37        11.77        21.90        10.75        12.95         4.64 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
       31.33        14.86         5.49         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 
        7.36        11.38         5.42         1.61        17.72 

  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        182.33                         211.17 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                         17.98                          14.99 
[1] "0.1 - 182.3 (18.0)" "0.0 - 211.2 (15.0)"
[1] "hr=" "1.8"
D31V2, continuous
D31V3, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED   109 206
  DEL PEAK  1(1P36.32) WILD-TYPE 464 306
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED    109  206
  DEL PEAK  1(1P36.32) WILD-TYPE  464  306
                        clus
vv                       DEL PEAK  1(1P36.32) MUTATED
  BRAIN                                           109
  CENTRAL NERVOUS SYSTEM                          206
                        clus
vv                       DEL PEAK  1(1P36.32) WILD-TYPE
  BRAIN                                             464
  CENTRAL NERVOUS SYSTEM                            306
[1] 2 2
[1] FALSE
D31V4, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED   127 188
  DEL PEAK  1(1P36.32) WILD-TYPE 326 444
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED    127  188
  DEL PEAK  1(1P36.32) WILD-TYPE  326  444
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                          127                            326
  MALE                            188                            444
[1] 2 2
[1] FALSE
D31V5, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED   110 189
  DEL PEAK  1(1P36.32) WILD-TYPE 148 581
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED    110  189
  DEL PEAK  1(1P36.32) WILD-TYPE  148  581
     clus
vv    DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  NO                           110                            148
  YES                          189                            581
[1] 2 2
[1] FALSE
D31V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  1(1P36.32) MUTATED            22                             2
  DEL PEAK  1(1P36.32) WILD-TYPE         172                            28
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  1(1P36.32) MUTATED                 46               138
  DEL PEAK  1(1P36.32) WILD-TYPE               83                51
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  1(1P36.32) MUTATED                     4
  DEL PEAK  1(1P36.32) WILD-TYPE                  14
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  1(1P36.32) MUTATED                               103
  DEL PEAK  1(1P36.32) WILD-TYPE                             422
D31V7, multiclass
                                 clus
vv                                DEL PEAK  1(1P36.32) MUTATED
  ASTROCYTOMA                                               22
  GLIOBLASTOMA MULTIFORME (GBM)                              2
  OLIGOASTROCYTOMA                                          46
  OLIGODENDROGLIOMA                                        138
  TREATED PRIMARY GBM                                        4
  UNTREATED PRIMARY (DE NOVO) GBM                          103
                                 clus
vv                                DEL PEAK  1(1P36.32) WILD-TYPE
  ASTROCYTOMA                                                172
  GLIOBLASTOMA MULTIFORME (GBM)                               28
  OLIGOASTROCYTOMA                                            83
  OLIGODENDROGLIOMA                                           51
  TREATED PRIMARY GBM                                         14
  UNTREATED PRIMARY (DE NOVO) GBM                            422
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  1(1P36.32) MUTATED                                  1    10
  DEL PEAK  1(1P36.32) WILD-TYPE                                0    11
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  1(1P36.32) MUTATED                          14   282
  DEL PEAK  1(1P36.32) WILD-TYPE                        57   677
D31V8, multiclass
                                  clus
vv                                 DEL PEAK  1(1P36.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  14
  WHITE                                                     282
                                  clus
vv                                 DEL PEAK  1(1P36.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        11
  BLACK OR AFRICAN AMERICAN                                    57
  WHITE                                                       677
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V9, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.32) MUTATED    14 270
  DEL PEAK  1(1P36.32) WILD-TYPE  30 651
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED     14  270
  DEL PEAK  1(1P36.32) WILD-TYPE   30  651
                        clus
vv                       DEL PEAK  1(1P36.32) MUTATED
  HISPANIC OR LATINO                               14
  NOT HISPANIC OR LATINO                          270
                        clus
vv                       DEL PEAK  1(1P36.32) WILD-TYPE
  HISPANIC OR LATINO                                 30
  NOT HISPANIC OR LATINO                            651
[1] 2 2
[1] FALSE

Clustering(32) Variable = DEL PEAK  2(1P36.23) MUTATION ANALYSIS
D32V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  2(1P36.23) MUTATED   184 156
  DEL PEAK  2(1P36.23) WILD-TYPE 296 442
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           340                            738 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           156                            442 
$`DEL PEAK  2(1P36.23) MUTATED`
TCGA-CS-6670 TCGA-DH-5141 TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       46.88        31.82        62.01        20.09        17.82        20.45 
TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 TCGA-06-5414 TCGA-06-5415 
       21.40        42.77        59.38         8.35         8.98         8.55 
TCGA-06-5859 TCGA-12-1599 TCGA-12-3649 TCGA-12-3652 TCGA-14-0736 TCGA-14-0786 
        4.57        25.68        15.22        34.92        15.12        23.05 
TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 TCGA-14-1458 TCGA-14-1827 TCGA-14-1829 
        2.89        16.50         1.12         6.67         5.88         7.17 
TCGA-16-1045 TCGA-16-1056 TCGA-19-0963 TCGA-19-2619 TCGA-19-2620 TCGA-19-2629 
       29.03        14.01        14.27         9.67         4.87        24.23 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5959 TCGA-26-1439 TCGA-27-1833 TCGA-27-2521 
        6.64        17.19        16.80        13.87        24.23        16.77 
TCGA-27-2524 TCGA-28-1750 TCGA-28-1752 TCGA-28-2502 TCGA-32-1977 TCGA-32-1978 
        7.59         8.35         8.48         0.66         0.10        15.85 
TCGA-32-2634 TCGA-32-2638 TCGA-32-5222 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 
       22.78        25.18        19.23        13.35         9.53         4.44 
TCGA-41-4097 TCGA-4W-AA9S TCGA-74-6575 TCGA-76-4928 TCGA-76-4931 TCGA-76-6191 
        0.20         1.45        20.91         3.09         9.17        16.70 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 TCGA-OX-A56R TCGA-RR-A6KA 
        8.35        20.98         5.03        23.90         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5275 
       20.55         0.26        53.62        49.94        75.25        47.93 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       91.13        44.52        18.84        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V 
       25.48        30.12         5.98        31.40        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A75K TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR 
       14.40        12.10        24.59        30.21        17.19        54.25 
TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       23.21        14.56         6.74       182.33        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6402 
       52.11        22.42        75.16        46.06         1.22         7.04 
TCGA-DU-6405 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7014 TCGA-DU-7018 
       19.89         7.96        11.47       154.36       117.40        30.67 
TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8164 
       10.36        94.32        60.30         5.10        23.74        21.40 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 
       15.48        14.17        25.55        21.57        95.11        22.29 
TCGA-DU-A76K TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TG TCGA-E1-5311 TCGA-E1-5318 
       11.41        21.30        17.98        44.42       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS 
       95.57       130.78        19.46        21.30        75.02        15.32 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 
      146.14        13.08        39.48         0.23        47.77        52.21 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8185 TCGA-FG-8186 
       18.44        15.35        22.55        20.61        14.24        16.01 
TCGA-FG-8189 TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FG-A87Q TCGA-HT-7467 
       22.52        15.02        16.44        36.66         5.72         0.10 
TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7477 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 
        6.67         0.13        24.26        75.19        95.93         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7681 
        3.16        22.06         0.23        14.27        16.24        44.68 
TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7857 
        0.10         2.96         6.90        14.53        39.09         0.23 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 
       37.15         0.33         0.13        35.47         1.64         9.40 
TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-A4DV TCGA-HT-A5R9 TCGA-HT-A5RA 
        6.25         5.56        29.59        26.04         0.07        27.35 
TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 
       16.93        16.14        17.65        15.35        11.05        56.58 
TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-KT-A74X 
       45.44        68.32        35.44        24.92        31.63        14.40 
TCGA-P5-A5EX TCGA-P5-A5F0 TCGA-P5-A5F4 TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        7.99         9.44         7.59        11.64        10.95         9.01 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V 
       12.23        19.20         3.45         4.41        15.16        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CY TCGA-QH-A6CZ 
       15.85        14.04        14.83        14.53        13.41         9.17 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK 
       14.53        16.34        16.73        16.70        11.08        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A847 
       94.03        32.65        30.87         5.46        28.08        30.67 
TCGA-S9-A6TS TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U2 
       62.17        41.10        40.93        35.38        24.39        29.85 
TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
       32.61       123.65        75.25       135.22        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        19.86        26.47        18.64        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY 
       26.93        23.51         8.19         2.04        20.68        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-TM-A7C5 TCGA-TM-A84G TCGA-TM-A84M TCGA-TM-A84O 
       27.16       169.84        49.32        40.64        24.79        33.24 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RN TCGA-TQ-A7RO 
       18.61        14.93        19.69         2.04        33.73        31.20 
TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       26.14        33.93        13.51         0.10         7.89        39.16 
TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 TCGA-02-0015 TCGA-02-0023 TCGA-02-0024 
       37.05        23.21        51.06        20.61        20.12        53.10 
TCGA-02-0025 TCGA-02-0028 TCGA-02-0051 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       42.74        90.58        15.09        19.73        26.43        28.70 
TCGA-02-0106 TCGA-02-0115 TCGA-02-0281 TCGA-02-0285 TCGA-02-0290 TCGA-02-0446 
       11.67        15.65         3.98        13.87        15.95         9.27 
TCGA-02-2483 TCGA-06-0124 TCGA-06-0137 TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 
       15.32        20.38        26.70        10.82         3.42        56.91 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0175 TCGA-06-0184 
        5.85        19.66         3.29        13.12         4.04        69.90 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0208 TCGA-06-0219 TCGA-06-0743 
       10.42        38.96         7.40         8.42         0.72        26.40 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 TCGA-06-1084 
        7.86         2.70         7.17        40.41        20.78        23.93 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2562 TCGA-06-6693 
        4.04        11.84        15.32        13.61        12.56       120.56 
TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 
       22.68       115.86         1.74        12.23        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 
       13.97         0.72         4.27        11.08        19.33        10.75 
TCGA-08-0531 TCGA-12-0656 TCGA-12-0670 TCGA-12-0688 TCGA-12-0769 TCGA-12-0776 
        7.56        94.78        25.97        26.66        15.06         9.73 
TCGA-12-0778 TCGA-12-0820 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 
       14.93        18.48        15.98        12.23        15.85        14.53 
TCGA-14-0787 TCGA-19-0962 TCGA-19-1386 TCGA-19-1387 TCGA-26-6173 TCGA-28-5211 
        2.24         0.66         9.07         5.95         7.92        11.77 
TCGA-28-6450 TCGA-76-6660 TCGA-81-5910 TCGA-87-5896 
        5.42         3.75         1.61        26.30 

$`DEL PEAK  2(1P36.23) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DH-A66B TCGA-DU-A76O 
        1.48         3.98        51.55        46.72        42.05        17.16 
TCGA-E1-A7YN TCGA-FG-A87N TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
       23.90        18.64        45.60        15.32        11.74         3.55 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        4.54         8.81         6.71         2.73         3.75         6.15 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.23         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.96        26.79         1.87         3.12         2.56        14.60 
TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1600 TCGA-12-1602 
       17.72        15.35        21.73        15.65        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 
       59.77        44.02        26.93        10.95        12.69        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
       14.93         3.22         2.04        11.97         0.95         6.21 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 
       13.78         3.25        26.33        15.95         1.38         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        0.92        40.96        12.43         0.99         1.97        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
       17.85         7.63        17.49         7.96         3.78         3.42 
TCGA-16-0848 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
       17.59         4.57        10.29         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        6.41         8.61         3.39        25.38         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
       12.66         3.25         0.13         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.08         7.00         7.04         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5960 TCGA-19-A60I 
       12.10         1.78        22.49        14.07        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       28.54        10.03         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       18.08        16.08         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        2.53         9.21         7.63         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        0.13         6.74         4.77        15.39        21.07         0.49 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-4208 
       12.23        20.78        15.02        15.95         8.84        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 
        3.72        12.59        19.86        10.85         0.85         8.94 
TCGA-41-3392 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9T 
        0.99        11.84        15.12        12.46         4.08        25.58 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 
        4.54         3.65         2.53        36.85         3.29         2.70 
TCGA-76-6282 TCGA-76-6656 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-CS-4938 
       17.06         4.83        34.45        18.64        36.20       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5395 
        7.69        43.89        36.36        60.10        40.18        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5280 
       49.12       122.73        81.96        72.92        50.86        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       78.28        46.42        30.21        39.78        37.45        33.57 
TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       27.45        18.51        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT 
       19.96        63.88        46.06        27.81        17.19        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 
       13.71        18.61        18.02        17.46        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 
        6.81        18.94       211.17        49.02        65.75        87.45 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 
       11.64       133.74        16.83        94.52       114.08         2.40 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       62.96       156.23        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 
       90.77        26.30         7.96        18.94        44.02        25.91 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 
       23.31        41.98         2.76        14.60        20.68        19.13 
TCGA-DU-8166 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       16.96        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76L TCGA-DU-A7T8 TCGA-DU-A7TA 
       24.99        33.96        20.98        26.76       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        38.89         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-A7YD TCGA-E1-A7YE 
       67.46        41.13        79.99        57.93        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YQ TCGA-E1-A7YU 
       93.21         3.65        12.43        16.18        51.88         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O4 
       32.45        36.82        73.48       145.05        32.35         0.20 
TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       25.48        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-7636 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8188 TCGA-FG-8191 
       17.88        20.09        28.34        13.68        14.96        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FN-7833 
       21.53        22.26        28.54        10.78        48.69        27.52 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       11.54        40.11         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
        6.54         6.38        40.34       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 
        5.03        29.85        23.18       122.47        17.29        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 
       56.09        57.60         0.16         0.76         6.05        42.74 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 
       31.69        14.96         0.10         0.10        17.52        39.48 
TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 
       19.23        50.63         0.49        23.61         3.68         5.33 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 
        3.72        11.28        31.43        16.24        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       37.87        33.01        12.23         0.10         0.46         2.50 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       13.78         0.23        34.19        28.27        15.72         0.23 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 
        0.13        20.22         0.10         5.33         2.70         1.81 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 
       16.83        17.52         2.43        10.52         0.10        41.49 
TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL 
       69.27        39.75        40.01        42.54        12.76        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY 
       20.71        19.00        14.40         0.23         6.71         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        2.30         5.88         7.96         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A780 TCGA-QH-A65S 
       13.25        13.61         9.60         7.56         2.37         2.53 
TCGA-QH-A6CS TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA 
       19.33        13.61        12.23        10.29         1.91        16.50 
TCGA-QH-A870 TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TU TCGA-S9-A6TV 
       12.99         9.90         2.07        19.59        87.12        18.77 
TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       36.82        25.81        35.15        98.24        95.93         5.85 
TCGA-S9-A6WG TCGA-S9-A6WO TCGA-S9-A7IS TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW 
       85.55        18.61         7.92        19.99        20.02        15.06 
TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       18.54        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF 
       18.71        20.48        54.77        48.33        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       24.92        16.18        59.05        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RJ 
       40.83        25.38        23.80        21.37        15.98        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-TQ-A7RW 
       44.09        36.69        30.05        25.87        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A86M 
       31.36        45.93        43.20        20.02        23.47        16.01 
TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       46.88        37.71        20.81         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
       18.35        23.18        10.59        35.41        20.71        82.59 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       87.06        77.65        24.59        12.16         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.22        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
        9.57         6.02        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.25        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.96         3.48        27.02        65.00        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        92.65        99.98        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 TCGA-02-0317 TCGA-02-0321 
       17.72        10.75        14.47        14.20        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.73        10.62         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
       11.34        16.21         3.35        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       20.32         2.70         6.15        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 
       22.72        33.67        12.95        25.35        14.30        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 
       12.33        13.94        10.45         3.19         9.44        11.80 
TCGA-06-0165 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
       10.65         4.47         3.22        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
       20.25         3.65        73.84        27.22        44.58        15.42 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0211 
        4.67         5.56         0.39         7.66         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16        19.82        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 
        5.75         9.80         2.10        23.57        14.20        46.88 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0881 TCGA-06-0939 
        2.70         0.92        43.46        46.19        16.57        26.76 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        6.84        26.79        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       17.65        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6694 TCGA-08-0245 
        0.43        31.50         7.79         5.39         7.36        37.84 
TCGA-08-0246 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        4.18         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 TCGA-08-0509 TCGA-08-0512 
       37.58        22.29         3.39        14.93        12.56        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.59        58.68         4.80         7.27        15.98        18.41 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0657 
       14.73        12.99        34.92        10.45         7.59         0.10 
TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0772 
       38.17        12.13         3.65        20.38        28.41        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 
       43.23         7.63        14.86        91.76        24.79        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 
        5.82         7.59        33.21         9.11         3.98         4.14 
TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 
       11.24         1.35         5.39         2.04        28.93        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        0.79        13.78        50.53        19.10        53.19        13.28 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 
        3.91        26.07        16.37        11.77        21.90        10.75 
TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
       12.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        2.33         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       14.53        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5911 
       22.68        12.76         7.36        11.38         5.42        17.72 

  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                        182.33                         211.17 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                         17.06                          15.22 
[1] "0.1 - 182.3 (17.1)" "0.0 - 211.2 (15.2)"
[1] "hr=" "1.5"
D32V2, continuous
D32V3, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED   132 212
  DEL PEAK  2(1P36.23) WILD-TYPE 441 300
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED    132  212
  DEL PEAK  2(1P36.23) WILD-TYPE  441  300
                        clus
vv                       DEL PEAK  2(1P36.23) MUTATED
  BRAIN                                           132
  CENTRAL NERVOUS SYSTEM                          212
                        clus
vv                       DEL PEAK  2(1P36.23) WILD-TYPE
  BRAIN                                             441
  CENTRAL NERVOUS SYSTEM                            300
[1] 2 2
[1] FALSE
D32V4, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED   138 206
  DEL PEAK  2(1P36.23) WILD-TYPE 315 426
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED    138  206
  DEL PEAK  2(1P36.23) WILD-TYPE  315  426
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  FEMALE                          138                            315
  MALE                            206                            426
[1] 2 2
[1] FALSE
D32V5, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED   116 211
  DEL PEAK  2(1P36.23) WILD-TYPE 142 559
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED    116  211
  DEL PEAK  2(1P36.23) WILD-TYPE  142  559
     clus
vv    DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  NO                           116                            142
  YES                          211                            559
[1] 2 2
[1] FALSE
D32V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  2(1P36.23) MUTATED            24                             5
  DEL PEAK  2(1P36.23) WILD-TYPE         170                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  2(1P36.23) MUTATED                 48               140
  DEL PEAK  2(1P36.23) WILD-TYPE               81                49
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  2(1P36.23) MUTATED                     3
  DEL PEAK  2(1P36.23) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  2(1P36.23) MUTATED                               124
  DEL PEAK  2(1P36.23) WILD-TYPE                             401
D32V7, multiclass
                                 clus
vv                                DEL PEAK  2(1P36.23) MUTATED
  ASTROCYTOMA                                               24
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          48
  OLIGODENDROGLIOMA                                        140
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                          124
                                 clus
vv                                DEL PEAK  2(1P36.23) WILD-TYPE
  ASTROCYTOMA                                                170
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                            81
  OLIGODENDROGLIOMA                                           49
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            401
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  2(1P36.23) MUTATED                                  1    10
  DEL PEAK  2(1P36.23) WILD-TYPE                                0    11
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  2(1P36.23) MUTATED                          18   305
  DEL PEAK  2(1P36.23) WILD-TYPE                        53   654
D32V8, multiclass
                                  clus
vv                                 DEL PEAK  2(1P36.23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      10
  BLACK OR AFRICAN AMERICAN                                  18
  WHITE                                                     305
                                  clus
vv                                 DEL PEAK  2(1P36.23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        11
  BLACK OR AFRICAN AMERICAN                                    53
  WHITE                                                       654
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V9, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.23) MUTATED    14 298
  DEL PEAK  2(1P36.23) WILD-TYPE  30 623
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.23) MUTATED     14  298
  DEL PEAK  2(1P36.23) WILD-TYPE   30  623
                        clus
vv                       DEL PEAK  2(1P36.23) MUTATED
  HISPANIC OR LATINO                               14
  NOT HISPANIC OR LATINO                          298
                        clus
vv                       DEL PEAK  2(1P36.23) WILD-TYPE
  HISPANIC OR LATINO                                 30
  NOT HISPANIC OR LATINO                            623
[1] 2 2
[1] FALSE

Clustering(33) Variable = DEL PEAK  3(1P32.3) MUTATION ANALYSIS
D33V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  3(1P32.3) MUTATED   169  85
  DEL PEAK  3(1P32.3) WILD-TYPE 311 513
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          254                           824 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           85                           513 
$`DEL PEAK  3(1P32.3) MUTATED`
TCGA-CS-6670 TCGA-DH-5141 TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       46.88        31.82        62.01        20.09        17.82        20.45 
TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 TCGA-12-1092 TCGA-12-3649 
       21.40        42.77        59.38         8.35        21.73        15.22 
TCGA-14-1452 TCGA-14-1455 TCGA-14-1458 TCGA-14-1795 TCGA-16-1045 TCGA-19-1390 
        7.10         0.92         6.67         1.97        29.03        25.38 
TCGA-19-2619 TCGA-19-2629 TCGA-19-5958 TCGA-26-1440 TCGA-26-1799 TCGA-27-2521 
        9.67        24.23        14.07         9.73         9.37        16.77 
TCGA-27-2527 TCGA-41-4097 TCGA-74-6575 TCGA-76-4931 TCGA-76-6282 TCGA-OX-A56R 
       14.40         0.20        20.91         9.17        17.06         5.92 
TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-5279 
        0.26        53.62        49.94        75.25        91.13        44.52 
TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       18.84        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K 
        5.98        31.40        27.81        29.23        14.40        12.10 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5849 
       24.59        30.21        17.19        54.25        23.21        14.56 
TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 
      182.33        15.16        52.11        22.42        46.06         1.22 
TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7302 
        7.96       154.36       117.40        30.67        94.32        60.30 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8164 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A6S2 
        5.10        23.74        21.40        15.48        14.17        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       21.57        95.11        22.29        11.41        26.76        21.30 
TCGA-DU-A7T6 TCGA-DU-A7TG TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       17.98        44.42       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YL TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YY TCGA-EZ-7264 
       14.30        16.18        75.02        15.32       146.14        39.48 
TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 
        0.23        47.77        52.21        15.35        22.55        20.61 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A710 
       14.24        16.01        22.52        15.02        16.44        36.66 
TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 
        5.72         0.10         6.67         0.13        75.19        95.93 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 
        4.57         3.16        22.06         0.23        14.27        16.24 
TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 
       44.68         0.10         2.96         6.90        14.53        39.09 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 
        0.23         0.49        37.15         0.33         0.13        35.47 
TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 
        1.64         9.40         6.25         5.56        13.78        29.59 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A61C 
        0.23        26.04         0.07        16.93        16.14        17.65 
TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 
        2.43        15.35        11.05        56.58        45.44        68.32 
TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-KT-A74X TCGA-P5-A5EX TCGA-P5-A5F0 
       35.44        24.92        31.63        14.40         7.99         9.44 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 
       11.64        10.95        12.23        19.20         3.45         4.41 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CY 
       15.16        12.62        15.85        14.04        14.83        13.41 
TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-R8-A6MK 
        9.17        14.53        16.34        16.73        11.08        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A847 
       94.03        32.65        30.87         5.46        28.08        30.67 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UB 
       41.10        40.93        35.38        29.85        32.61       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
       75.25       135.22        38.56        84.99        31.10        26.47 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 
       18.64        14.07        36.13        23.51         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-TM-A7C5 TCGA-TM-A84G 
       20.68        28.37        27.16       169.84        49.32        40.64 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RG TCGA-TQ-A7RI 
       24.79        33.24        18.61        14.93        19.69         2.04 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-VM-A8CA TCGA-VM-A8CB 
       33.73        31.20        26.14        33.93        13.51         0.10 
TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 TCGA-02-0028 TCGA-02-0059 
       39.16        37.05        23.21        51.06        90.58         9.57 
TCGA-02-0074 TCGA-02-0115 TCGA-02-0269 TCGA-02-0281 TCGA-02-0333 TCGA-02-0446 
       10.19        15.65        10.75         3.98         4.37         9.27 
TCGA-02-2483 TCGA-02-2486 TCGA-06-0188 TCGA-06-0194 TCGA-06-0241 TCGA-06-0410 
       15.32        20.32        44.58         4.67        48.69         4.70 
TCGA-06-0646 TCGA-06-0649 TCGA-06-0743 TCGA-06-0749 TCGA-06-0750 TCGA-06-1802 
        5.75         2.10        26.40         2.70         0.92        15.32 
TCGA-06-2561 TCGA-06-2567 TCGA-08-0244 TCGA-08-0344 TCGA-08-0390 TCGA-08-0392 
       17.65         4.37        22.68       115.86        13.97         0.72 
TCGA-08-0510 TCGA-08-0529 TCGA-12-0654 TCGA-12-0773 TCGA-12-0776 TCGA-14-0813 
        4.27        18.41         7.59        43.23         9.73         1.35 
TCGA-19-1387 TCGA-26-5134 TCGA-28-2514 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
        5.95         5.49         5.26        31.27        11.01        13.64 
TCGA-28-5220 TCGA-76-6660 
       12.76         3.75 

$`DEL PEAK  3(1P32.3) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DH-A66B TCGA-DU-A76O 
        1.48         3.98        51.55        46.72        42.05        17.16 
TCGA-E1-A7YN TCGA-FG-A87N TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
       23.90        18.64        45.60        15.32        11.74         3.55 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        3.75         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96        26.79         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1598 
        3.12         2.56        14.60        17.72        15.35        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.04        15.12        11.97         0.95         6.21        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 
       13.78         3.25         2.89        16.50        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1821 
        1.15        30.18        40.96        12.43         0.99        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.78         3.42        17.59         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
        9.14        21.24        13.97         6.41         8.61        14.27 
TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        3.39         3.65         7.17        12.66         3.25         0.13 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
       12.10         1.78        22.49        16.80        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1443 TCGA-26-5132 TCGA-26-5135 
       28.54        10.03        13.87         7.13         9.40         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
       18.97        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 
       18.08        16.08         7.59         2.86        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.55         2.83         0.13         0.66         6.74         4.77 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.39        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
       11.84        15.12        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
        3.29         2.70         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC 
       23.90        34.45        18.64        36.20         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
      117.50         7.69        43.89        36.36        60.10        40.18 
TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       21.01         6.38        17.69        26.76        37.38        46.95 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 
       48.30        49.12       122.73        81.96        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD 
       50.86        36.56        78.28        46.42        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M 
       37.45        33.57        27.45        18.51        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66D 
       30.74        16.18        19.96        63.88        46.06        27.81 
TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5851 
       17.19        17.46        13.71        18.61        18.02        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         8.45         6.81        18.94        17.49 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
      211.17        49.02        75.16        65.75        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 
        2.40        11.47        62.96       156.23        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        6.54         8.84        90.77        26.30        10.36         7.96 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       18.94        44.02        25.91        23.31        41.98         2.76 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-A5TP TCGA-DU-A5TR 
       14.60        20.68        19.13        16.96        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 
       31.69        24.43        26.17        24.99        33.96        20.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TI 
      139.04        84.33        51.52        37.38         7.50        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YM 
       29.13        93.21         3.65        19.46        12.43        21.30 
TCGA-E1-A7YQ TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z2 TCGA-E1-A7Z3 
       51.88         0.76        32.45        36.82        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 
      145.05        32.35         0.20        25.48        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7643 
       14.93        42.54        41.33        18.44        17.88        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       28.34        13.68        14.96        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 
       18.38        18.71        23.70        14.76        21.53        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7470 
       28.54        10.78        48.69        27.52        11.54        40.11 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
        6.38        40.34       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 
       29.85        23.18       122.47        17.29        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 
       57.60         0.16         0.76         6.05        42.74        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 
       14.96         0.10         0.10        17.52        39.48        19.23 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 
       50.63        23.61         3.68         5.33         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       31.43        16.24        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8111 TCGA-HT-8114 
       12.23         0.10         0.46         2.50         0.23        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB 
       28.27        15.72         0.13        20.22        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74J 
        5.33         2.70         1.81        16.83        17.52        10.52 
TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
        0.10        41.49        69.27        39.75        40.01        42.54 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV 
       12.76        28.87        20.71        19.00        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        6.71         2.37         2.30         5.88         7.96         7.59 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A731 TCGA-P5-A733 
        1.28         0.23        10.42        13.25         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A780 TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CV 
        9.60         7.56         2.37         2.53        19.33        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       13.61        12.23        10.29         1.91        16.50        16.70 
TCGA-QH-A870 TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU 
       12.99         9.90         2.07        19.59        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 
       18.77        36.82        24.39        25.81        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IS 
       95.93         5.85        85.55        19.86        18.61         7.92 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R2 
       26.93        19.99        20.02        15.06        18.54        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       54.77        48.33        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84Q 
       59.05        30.44        28.08        24.16        40.83        25.38 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       23.80        21.37        15.98        40.41        44.09        36.69 
TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       30.05        25.87        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CD TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI 
       43.20         7.89        20.02        23.47        16.01         8.05 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       37.71        20.81         7.63        11.77         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       23.18        10.59        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       87.06        77.65        20.12        53.10        42.74        24.59 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.31         6.87        14.73         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 
        6.54         2.50        19.86         8.35         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       26.43        28.70        25.05         5.49        20.84        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72        12.62        51.32         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        92.65        99.98        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       17.72        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
       11.34        16.21         3.35        16.80        12.92        15.45 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         3.42        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 
       73.84        27.22        15.42        10.42        38.96         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.53        15.02        24.16         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       13.32        20.42        10.82         9.01         0.26        72.36 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0648 
        9.57         3.16        35.11        12.62         5.75         9.80 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0875 
       23.57        14.20        46.88         7.86         2.70        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 
       23.93         6.84         4.04        26.79        11.84        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08        12.49         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
        5.95        16.64         5.98         0.43        31.50         7.79 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 
        5.39       120.56         7.36        37.84         4.18         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0531 TCGA-12-0616 
       10.75         4.80         7.27        15.98         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       12.99        34.92        10.45        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       15.06        53.85         7.63        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 
        4.14         2.24        11.24         5.39         2.04        28.93 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
       19.30         0.79        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 
       13.28         3.91        26.07        16.37        11.77        21.90 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 
        0.66        10.75         9.07        12.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 
       14.86         1.58         7.92         2.33         7.30        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 
       11.28        17.88        14.53        11.77        23.44         5.16 
TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 
       22.68         5.42         7.36        11.38         5.42         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                       182.33                        211.17 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                       18.195                        15.350 
[1] "0.1 - 182.3 (18.2)" "0.0 - 211.2 (15.3)"
[1] "hr=" "2.3"
D33V2, continuous
D33V3, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED    61 196
  DEL PEAK  3(1P32.3) WILD-TYPE 512 316
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED     61  196
  DEL PEAK  3(1P32.3) WILD-TYPE  512  316
                        clus
vv                       DEL PEAK  3(1P32.3) MUTATED
  BRAIN                                           61
  CENTRAL NERVOUS SYSTEM                         196
                        clus
vv                       DEL PEAK  3(1P32.3) WILD-TYPE
  BRAIN                                            512
  CENTRAL NERVOUS SYSTEM                           316
[1] 2 2
[1] FALSE
D33V4, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED   107 150
  DEL PEAK  3(1P32.3) WILD-TYPE 346 482
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED    107  150
  DEL PEAK  3(1P32.3) WILD-TYPE  346  482
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  FEMALE                         107                           346
  MALE                           150                           482
[1] 2 2
[1] FALSE
D33V5, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED   105 135
  DEL PEAK  3(1P32.3) WILD-TYPE 153 635
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED    105  135
  DEL PEAK  3(1P32.3) WILD-TYPE  153  635
     clus
vv    DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  NO                          105                           153
  YES                         135                           635
[1] 2 2
[1] FALSE
D33V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  3(1P32.3) MUTATED            16                             2
  DEL PEAK  3(1P32.3) WILD-TYPE         178                            28
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  3(1P32.3) MUTATED                 42               138
  DEL PEAK  3(1P32.3) WILD-TYPE               87                51
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  3(1P32.3) MUTATED                     2
  DEL PEAK  3(1P32.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  3(1P32.3) MUTATED                                57
  DEL PEAK  3(1P32.3) WILD-TYPE                             468
D33V7, multiclass
                                 clus
vv                                DEL PEAK  3(1P32.3) MUTATED
  ASTROCYTOMA                                              16
  GLIOBLASTOMA MULTIFORME (GBM)                             2
  OLIGOASTROCYTOMA                                         42
  OLIGODENDROGLIOMA                                       138
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          57
                                 clus
vv                                DEL PEAK  3(1P32.3) WILD-TYPE
  ASTROCYTOMA                                               178
  GLIOBLASTOMA MULTIFORME (GBM)                              28
  OLIGOASTROCYTOMA                                           87
  OLIGODENDROGLIOMA                                          51
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           468
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  3(1P32.3) MUTATED                                  1     7
  DEL PEAK  3(1P32.3) WILD-TYPE                                0    14
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  3(1P32.3) MUTATED                          10   231
  DEL PEAK  3(1P32.3) WILD-TYPE                        61   728
D33V8, multiclass
                                  clus
vv                                 DEL PEAK  3(1P32.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      7
  BLACK OR AFRICAN AMERICAN                                 10
  WHITE                                                    231
                                  clus
vv                                 DEL PEAK  3(1P32.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       14
  BLACK OR AFRICAN AMERICAN                                   61
  WHITE                                                      728
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V9, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P32.3) MUTATED    14 221
  DEL PEAK  3(1P32.3) WILD-TYPE  30 700
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P32.3) MUTATED     14  221
  DEL PEAK  3(1P32.3) WILD-TYPE   30  700
                        clus
vv                       DEL PEAK  3(1P32.3) MUTATED
  HISPANIC OR LATINO                              14
  NOT HISPANIC OR LATINO                         221
                        clus
vv                       DEL PEAK  3(1P32.3) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           700
[1] 2 2
[1] FALSE

Clustering(34) Variable = DEL PEAK  4(1P22.1) MUTATION ANALYSIS
D34V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  4(1P22.1) MUTATED   163  68
  DEL PEAK  4(1P22.1) WILD-TYPE 317 530
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          231                           847 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           68                           530 
$`DEL PEAK  4(1P22.1) MUTATED`
TCGA-CS-6670 TCGA-DH-5141 TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       46.88        31.82        62.01        20.09        17.82        20.45 
TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 TCGA-06-A5U1 TCGA-12-0615 
       21.40        42.77        59.38         8.35         1.87        15.35 
TCGA-12-3652 TCGA-14-1452 TCGA-16-1047 TCGA-16-1055 TCGA-16-1062 TCGA-19-0964 
       34.92         7.10         4.57        10.29        21.24         3.39 
TCGA-19-1390 TCGA-19-2619 TCGA-19-2629 TCGA-19-5953 TCGA-19-5959 TCGA-26-1440 
       25.38         9.67        24.23         4.73        16.80         9.73 
TCGA-27-1837 TCGA-28-2502 TCGA-32-4719 TCGA-41-5651 TCGA-74-6575 TCGA-76-6285 
       14.04         0.66        10.85        15.12        20.91         8.35 
TCGA-CS-4944 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5278 
       60.10         0.26        53.62        49.94        75.25        91.13 
TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       44.52        78.28        18.84        72.95        31.63        24.20 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
       30.12         5.98        31.40        27.81        29.23        14.40 
TCGA-DB-A75K TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US 
       12.10        24.59        30.21        17.19        54.25        23.21 
TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 
       14.56       182.33        15.16        52.11        22.42        46.06 
TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7294 
        1.22         7.96       154.36       117.40        30.67        94.32 
TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 
       60.30         5.10        21.40        14.17        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TG TCGA-E1-5311 
       95.11        22.29        21.30        17.98        44.42       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YY 
       78.21        95.57       130.78        75.02        15.32       146.14 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7638 
       39.48         0.23        47.77        52.21        15.35        22.55 
TCGA-FG-7641 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-A6IZ TCGA-FG-A6J1 
       20.61        14.24        16.01        22.52        15.02        16.44 
TCGA-FG-A710 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 
       36.66         0.10         6.67         0.13        75.19        95.93 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 
        4.57         3.16        22.06         0.23        14.27        16.24 
TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 
       44.68         0.10         2.96         6.90        14.53        39.09 
TCGA-HT-7857 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 
        0.23        37.15         0.33         0.13        35.47         1.64 
TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-A4DV TCGA-HT-A5R9 
        9.40         6.25         5.56        29.59        26.04         0.07 
TCGA-HT-A615 TCGA-HT-A61C TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 
       16.93        17.65        15.35        11.05        56.58        45.44 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-KT-A74X TCGA-P5-A5EX 
       68.32        35.44        24.92        31.63        14.40         7.99 
TCGA-P5-A5F0 TCGA-P5-A5F4 TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A737 TCGA-P5-A77W 
        9.44         7.59        11.64        10.95        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        3.45         4.41        15.16        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       14.83        13.41         9.17        14.53        16.34        16.73 
TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       11.08        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A847 TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U2 
       28.08        30.67        41.10        40.93        35.38        29.85 
TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
       32.61       123.65        75.25       135.22        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7J1 
       31.10        26.47        18.64        36.13        23.51         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A89Z 
        2.04        20.68        28.37        27.16       169.84        20.48 
TCGA-TM-A7C5 TCGA-TM-A84G TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S 
       49.32        40.64        24.79        33.24        18.61        14.93 
TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RU 
       19.69         2.04        33.73        31.20        26.14        33.93 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 
       13.51         0.10        39.16        37.05        23.21        51.06 
TCGA-02-0015 TCGA-02-0024 TCGA-02-0027 TCGA-02-0028 TCGA-02-0038 TCGA-02-0043 
       20.61        53.10        12.16        90.58        10.72        18.31 
TCGA-02-0083 TCGA-02-0451 TCGA-06-0122 TCGA-06-0133 TCGA-06-0169 TCGA-06-0175 
       22.72        16.21         6.15        14.30         3.29         4.04 
TCGA-06-1802 TCGA-06-2565 TCGA-08-0244 TCGA-08-0344 TCGA-08-0347 TCGA-08-0348 
       15.32        16.64        22.68       115.86        25.71        12.16 
TCGA-08-0392 TCGA-08-0510 TCGA-12-0691 TCGA-12-0819 TCGA-12-0827 TCGA-19-1387 
        0.72         4.27        12.13        24.79        38.76         5.95 
TCGA-28-5208 TCGA-28-5213 TCGA-76-6660 
       17.88        31.27         3.75 

$`DEL PEAK  4(1P22.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DH-A66B TCGA-DU-A76O 
        1.48         3.98        51.55        46.72        42.05        17.16 
TCGA-E1-A7YN TCGA-FG-A87N TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
       23.90        18.64        45.60        15.32        11.74         3.55 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        3.75         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 
        4.77         1.55         4.77         4.96        26.79         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 
        2.56        14.60        17.72        21.73        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        12.69        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 
       15.12        11.97         0.95         6.21        23.05        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
        3.25         2.89        16.50        26.33        15.95         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 
        1.12         3.75        32.05        58.78        23.11         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.97        17.79        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 
       17.49         7.96         3.78         3.42        17.59        29.03 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
       14.01         9.14        13.97         6.41         8.61        14.27 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 
        3.65         7.17        12.66         3.25         0.13         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 
        1.08         7.53         0.16         4.08         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 
        6.64        17.19         8.02        18.90        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       22.49        14.07        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       13.87         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        30.05        11.51        24.76        18.08        16.77 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 
        1.55         2.83         0.13         6.74         4.77        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
        3.72        12.59        19.86        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 
       12.46         4.08         1.45        25.58         3.45         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        2.70        17.06        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5395 
      117.50         7.69        43.89        36.36        40.18        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
       49.12       122.73        81.96        47.93        72.92        50.86 
TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       36.56        46.42        30.21        39.78        37.45        33.57 
TCGA-DB-A64O TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       25.48        27.45        18.51        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A66D TCGA-DH-A66G 
       16.18        19.96        63.88        46.06        27.81        17.19 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 
       17.46        13.71        18.61        18.02        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 
       13.38         8.45         6.81        18.94        17.49       211.17 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       49.02        75.16        65.75        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 
      133.74        19.89        16.83        94.52       114.08         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 
        8.84        90.77        26.30        10.36         7.96        18.94 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 
       44.02        25.91        23.31        41.98         2.76        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP 
       14.60        20.68        19.13        16.96        15.48        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       20.98        11.41        26.76       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        38.89         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       41.13        79.99        57.93        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ 
        3.65        19.46        12.43        16.18        21.30        51.88 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
        0.76        32.45        36.82        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       32.35         0.20        25.48        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7643 TCGA-FG-8181 
       42.54        41.33        18.44        17.88        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       13.68        14.96        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Y 
       18.71        23.70        14.76        21.53        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7470 
       10.78        48.69         5.72        27.52        11.54        40.11 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
        6.38        40.34       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 
       29.85        23.18       122.47        17.29        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 
       57.60         0.16         0.76         6.05        42.74        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 
       14.96         0.10         0.10        17.52        39.48        19.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 
       50.63         0.49        23.61         3.68         5.33         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       11.28        31.43        16.24        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 
       33.01        12.23         0.10         0.46         2.50        13.78 
TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 
        0.23        34.19        28.27        15.72         0.23         0.13 
TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 
       20.22        27.35         0.10         5.33         2.70         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74O 
       16.14        16.83        17.52         2.43        10.52         0.10 
TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK 
       41.49        69.27        39.75        40.01        42.54        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       28.87        20.71        19.00        14.40         0.23         6.71 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U 
        2.37         2.30         5.88         7.96         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       10.42        13.25         9.01        13.61         9.60         7.56 
TCGA-P5-A780 TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
        2.37         2.53        19.33        14.53        13.61        12.23 
TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-RY-A83Z 
       10.29         1.91        16.50        16.70        12.99         9.90 
TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TZ 
        2.07        19.59        62.17        87.12        18.77        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       24.39        25.81        35.15        98.24        95.93         5.85 
TCGA-S9-A6WG TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IX 
       85.55        19.86        18.61        14.07         7.92        26.93 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 
       19.99        20.02        15.06        18.54        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 
       30.05        98.63        31.59        18.71        54.77        48.33 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H 
       34.78        65.39        24.92        16.18        59.05        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RF 
       28.08        24.16        40.83        25.38        23.80        21.37 
TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-TQ-A7RR 
       15.98        40.41        44.09        36.69        30.05        25.87 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CD 
       61.41        26.99        31.36        45.93        43.20         7.89 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 
       20.02        23.47        16.01         8.05        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 
TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
        7.63        11.77         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       35.41        20.71        82.59        87.06        77.65        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0039 
       42.74        24.59         2.83        14.14         3.62        10.52 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
        6.87        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       26.43        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.25        89.72        12.62        51.32         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.18        92.65        99.98        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.93        17.72        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        2.70        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       33.67        12.95        25.35        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       13.94        10.45         3.19        10.82         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0171 
        3.42        56.91        10.65         5.85        19.66        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       24.16         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        9.57         3.16        35.11        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 
        6.84         4.04        26.79        11.84        13.61        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
        5.95         5.98         4.37         0.43        31.50         7.79 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 
        5.39       120.56         7.36        37.84         4.18         1.74 
TCGA-08-0346 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
        8.42         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
       12.23        14.93        18.02        15.35        13.97        12.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       42.15        11.08        19.59        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        4.80         7.27        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       38.17        25.97        26.66         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.86        91.76        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 
       53.19        13.28         3.91        26.07        16.37        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 
       21.90         0.66        10.75         9.07        12.95         4.64 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
       31.33        14.86         5.49         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26        14.93        11.28        14.53        11.77 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 
        5.42         7.36        11.38         5.42         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                       182.33                        211.17 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                        20.91                         14.99 
[1] "0.1 - 182.3 (20.9)" "0.0 - 211.2 (15.0)"
[1] "hr=" "2.9"
D34V2, continuous
D34V3, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED    48 186
  DEL PEAK  4(1P22.1) WILD-TYPE 525 326
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED     48  186
  DEL PEAK  4(1P22.1) WILD-TYPE  525  326
                        clus
vv                       DEL PEAK  4(1P22.1) MUTATED
  BRAIN                                           48
  CENTRAL NERVOUS SYSTEM                         186
                        clus
vv                       DEL PEAK  4(1P22.1) WILD-TYPE
  BRAIN                                            525
  CENTRAL NERVOUS SYSTEM                           326
[1] 2 2
[1] FALSE
D34V4, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED   102 132
  DEL PEAK  4(1P22.1) WILD-TYPE 351 500
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED    102  132
  DEL PEAK  4(1P22.1) WILD-TYPE  351  500
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  FEMALE                         102                           351
  MALE                           132                           500
[1] 2 2
[1] FALSE
D34V5, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED   100 119
  DEL PEAK  4(1P22.1) WILD-TYPE 158 651
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED    100  119
  DEL PEAK  4(1P22.1) WILD-TYPE  158  651
     clus
vv    DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  NO                          100                           158
  YES                         119                           651
[1] 2 2
[1] FALSE
D34V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  4(1P22.1) MUTATED            11                             2
  DEL PEAK  4(1P22.1) WILD-TYPE         183                            28
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  4(1P22.1) MUTATED                 39               136
  DEL PEAK  4(1P22.1) WILD-TYPE               90                53
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  4(1P22.1) MUTATED                     4
  DEL PEAK  4(1P22.1) WILD-TYPE                  14
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  4(1P22.1) MUTATED                                42
  DEL PEAK  4(1P22.1) WILD-TYPE                             483
D34V7, multiclass
                                 clus
vv                                DEL PEAK  4(1P22.1) MUTATED
  ASTROCYTOMA                                              11
  GLIOBLASTOMA MULTIFORME (GBM)                             2
  OLIGOASTROCYTOMA                                         39
  OLIGODENDROGLIOMA                                       136
  TREATED PRIMARY GBM                                       4
  UNTREATED PRIMARY (DE NOVO) GBM                          42
                                 clus
vv                                DEL PEAK  4(1P22.1) WILD-TYPE
  ASTROCYTOMA                                               183
  GLIOBLASTOMA MULTIFORME (GBM)                              28
  OLIGOASTROCYTOMA                                           90
  OLIGODENDROGLIOMA                                          53
  TREATED PRIMARY GBM                                        14
  UNTREATED PRIMARY (DE NOVO) GBM                           483
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  4(1P22.1) MUTATED                                  0     5
  DEL PEAK  4(1P22.1) WILD-TYPE                                1    16
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  4(1P22.1) MUTATED                          10   210
  DEL PEAK  4(1P22.1) WILD-TYPE                        61   749
D34V8, multiclass
                                  clus
vv                                 DEL PEAK  4(1P22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      5
  BLACK OR AFRICAN AMERICAN                                 10
  WHITE                                                    210
                                  clus
vv                                 DEL PEAK  4(1P22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   61
  WHITE                                                      749
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V9, binary
                               cls
clus                              0   1
  DEL PEAK  4(1P22.1) MUTATED    14 203
  DEL PEAK  4(1P22.1) WILD-TYPE  30 718
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1P22.1) MUTATED     14  203
  DEL PEAK  4(1P22.1) WILD-TYPE   30  718
                        clus
vv                       DEL PEAK  4(1P22.1) MUTATED
  HISPANIC OR LATINO                              14
  NOT HISPANIC OR LATINO                         203
                        clus
vv                       DEL PEAK  4(1P22.1) WILD-TYPE
  HISPANIC OR LATINO                                30
  NOT HISPANIC OR LATINO                           718
[1] 2 2
[1] FALSE

Clustering(35) Variable = DEL PEAK  5(1Q42.11) MUTATION ANALYSIS
D35V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  5(1Q42.11) MUTATED    27  51
  DEL PEAK  5(1Q42.11) WILD-TYPE 453 547
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            78                           1000 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            51                            547 
$`DEL PEAK  5(1Q42.11) MUTATED`
TCGA-HT-A619 TCGA-06-1806 TCGA-06-5411 TCGA-12-1599 TCGA-14-0740 TCGA-14-0790 
       21.40        15.32         8.35        25.68        11.97        13.78 
TCGA-14-0812 TCGA-14-1034 TCGA-14-1395 TCGA-14-1450 TCGA-19-1390 TCGA-19-2619 
        3.25        15.95         1.38        58.78        25.38         9.67 
TCGA-19-2629 TCGA-19-A6J5 TCGA-27-2524 TCGA-28-2502 TCGA-32-1977 TCGA-32-1986 
       24.23        28.54         7.59         0.66         0.10        12.69 
TCGA-32-1987 TCGA-74-6575 TCGA-74-6577 TCGA-76-6193 TCGA-RR-A6KA TCGA-CS-5395 
       14.86        20.91         4.34         2.70         6.28        21.01 
TCGA-DU-6396 TCGA-DU-8158 TCGA-DU-A5TS TCGA-DU-A76K TCGA-DU-A7TA TCGA-DU-A7TG 
       75.16         5.10        31.69        11.41        84.33        44.42 
TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YV TCGA-E1-A7YY TCGA-FG-8185 
       50.14        41.13       130.78        32.45       146.14        14.24 
TCGA-FG-A6J3 TCGA-HT-7477 TCGA-HT-7485 TCGA-HT-7857 TCGA-HT-8104 TCGA-HT-8113 
       22.26        24.26         4.01         0.23        12.23        29.59 
TCGA-HT-A5RA TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A780 TCGA-QH-A65S TCGA-S9-A6WI 
       27.35         7.59         0.23         2.37         2.53        84.99 
TCGA-S9-A89Z TCGA-TM-A84T TCGA-02-0084 TCGA-02-0099 TCGA-02-0106 TCGA-02-0281 
       20.48        23.80        12.62         3.48        11.67         3.98 
TCGA-02-0333 TCGA-02-0446 TCGA-02-2466 TCGA-06-0126 TCGA-06-0190 TCGA-06-0238 
        4.37         9.27        16.80         6.94        10.42        13.32 
TCGA-06-0402 TCGA-06-1084 TCGA-06-1802 TCGA-06-2558 TCGA-06-6390 TCGA-08-0246 
        0.26        23.93        15.32        12.49         5.39         4.18 
TCGA-08-0392 TCGA-08-0510 TCGA-12-0620 TCGA-12-0656 TCGA-12-0776 TCGA-14-0817 
        0.72         4.27        10.45        94.78         9.73         5.39 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1387 TCGA-19-1388 TCGA-26-5133 TCGA-76-6660 
       21.90         0.66         5.95        12.95        14.86         3.75 

$`DEL PEAK  5(1Q42.11) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 
       20.45        18.64        45.60        42.77        59.38        11.74 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        3.55         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        2.73         3.75         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
        1.87         3.12         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       21.73        15.65        14.73         6.77        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       14.93         3.22         2.04        15.12         0.95         6.21 
TCGA-14-0786 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1396 TCGA-14-1401 
       23.05         2.89        16.50        26.33         1.12         3.75 
TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       32.05        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.96         6.67        12.43         0.99         1.97        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.78         3.42        17.59        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 
       14.01         9.14        21.24        13.97         6.41         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       14.27         3.39         3.65         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
       14.96        17.79        10.03        13.87         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        16.77        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        0.13         6.74         4.77        15.39        21.07         0.49 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1991 TCGA-32-2491 
       15.85        19.50         1.18         4.67        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
       11.84         0.20        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       25.58         3.45        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.17         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
       16.70         3.29        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        5.03        23.90        34.45        18.64        36.20         5.92 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55       117.50         7.69        43.89        36.36        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       40.18         0.26        53.62         6.38        17.69        26.76 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       37.38        46.95        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        19.96        63.88        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 
       25.91        60.30        23.31        41.98         2.76        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.17        33.27        29.85        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC 
       26.76        21.30        17.98       139.04        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
        7.50        38.89         0.56        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
      134.27        78.21        95.57        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO 
        3.65        19.46        12.43        16.18        21.30        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7Z2 TCGA-E1-A7Z3 
       51.88        15.32         0.76        36.82        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       41.33        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       20.09        28.34        13.68        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z 
       14.76        21.53        15.02        16.44        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       36.66        48.69         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       17.42         6.54         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      106.95       172.77         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       39.48        19.23        39.09        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       63.55         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 
        0.46         2.50         5.56        13.78         0.23        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.14        16.83        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       68.32        69.27        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       24.92        31.63        12.76        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72W 
        2.30         9.44         5.88         7.96         1.28        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R 
        7.56        12.23        19.20         3.45         4.41        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50        16.70        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       98.63        31.59        18.71        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       25.38        18.61        14.93        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        45.93        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 
       22.72        51.32         8.81        57.76        16.96        27.02 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       65.00        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 
       10.62         7.33        15.91        25.71        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0451 
       12.39        14.50        10.55        47.11        11.34        16.21 
TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        6.15        20.38        47.61         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       13.94        10.45         3.19        10.82         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        3.42        56.91        10.65         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       44.58        15.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 
       15.02        24.16         0.72        19.82        13.64        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         9.01        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        3.16        35.11        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.70         0.92        43.46        46.19         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 
       40.41        16.57        20.78        26.76         6.84         4.04 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 
       26.79        11.84        13.61        33.90         1.08         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6693 TCGA-06-6694 
        4.37         0.43        31.50         7.79       120.56         7.36 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        37.84       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       12.16         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
       12.23        14.93        18.02        15.35        13.97        12.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       42.15        11.08        19.59        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        4.80         7.27        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       12.99        34.92         7.59         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.85        43.23         7.63        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0867 TCGA-14-0871 
        4.14         2.24        11.24         1.35         2.04        28.93 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
       19.30         0.79        13.78        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-1385 
       13.28         3.91        26.07        16.37        11.77        10.75 
TCGA-19-1386 TCGA-19-1389 TCGA-26-1442 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 
        9.07         4.64        31.33         5.49         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        2.33         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
        5.16        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         1.61        17.72        26.30 

  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                        146.14                         211.17 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                        12.555                         16.290 
[1] "0.1 - 146.1 (12.6)" "0.0 - 211.2 (16.3)"
[1] "hr=" "1.4"
D35V2, continuous
D35V3, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED    50  28
  DEL PEAK  5(1Q42.11) WILD-TYPE 523 484
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED     50   28
  DEL PEAK  5(1Q42.11) WILD-TYPE  523  484
                        clus
vv                       DEL PEAK  5(1Q42.11) MUTATED
  BRAIN                                            50
  CENTRAL NERVOUS SYSTEM                           28
                        clus
vv                       DEL PEAK  5(1Q42.11) WILD-TYPE
  BRAIN                                             523
  CENTRAL NERVOUS SYSTEM                            484
[1] 2 2
[1] FALSE
D35V4, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED    35  43
  DEL PEAK  5(1Q42.11) WILD-TYPE 418 589
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED     35   43
  DEL PEAK  5(1Q42.11) WILD-TYPE  418  589
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  FEMALE                           35                            418
  MALE                             43                            589
[1] 2 2
[1] FALSE
D35V5, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED    15  56
  DEL PEAK  5(1Q42.11) WILD-TYPE 243 714
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED     15   56
  DEL PEAK  5(1Q42.11) WILD-TYPE  243  714
     clus
vv    DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  NO                            15                            243
  YES                           56                            714
[1] 2 2
[1] FALSE
D35V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  5(1Q42.11) MUTATED            12                             4
  DEL PEAK  5(1Q42.11) WILD-TYPE         182                            26
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  5(1Q42.11) MUTATED                  6                10
  DEL PEAK  5(1Q42.11) WILD-TYPE              123               179
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  5(1Q42.11) MUTATED                     1
  DEL PEAK  5(1Q42.11) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  5(1Q42.11) MUTATED                                45
  DEL PEAK  5(1Q42.11) WILD-TYPE                             480
D35V7, multiclass
                                 clus
vv                                DEL PEAK  5(1Q42.11) MUTATED
  ASTROCYTOMA                                               12
  GLIOBLASTOMA MULTIFORME (GBM)                              4
  OLIGOASTROCYTOMA                                           6
  OLIGODENDROGLIOMA                                         10
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           45
                                 clus
vv                                DEL PEAK  5(1Q42.11) WILD-TYPE
  ASTROCYTOMA                                                182
  GLIOBLASTOMA MULTIFORME (GBM)                               26
  OLIGOASTROCYTOMA                                           123
  OLIGODENDROGLIOMA                                          179
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            480
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  5(1Q42.11) MUTATED                                  0     1
  DEL PEAK  5(1Q42.11) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  5(1Q42.11) MUTATED                           9    64
  DEL PEAK  5(1Q42.11) WILD-TYPE                        62   895
D35V8, multiclass
                                  clus
vv                                 DEL PEAK  5(1Q42.11) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                   9
  WHITE                                                      64
                                  clus
vv                                 DEL PEAK  5(1Q42.11) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    62
  WHITE                                                       895
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V9, binary
                                cls
clus                               0   1
  DEL PEAK  5(1Q42.11) MUTATED     2  65
  DEL PEAK  5(1Q42.11) WILD-TYPE  42 856
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(1Q42.11) MUTATED      2   65
  DEL PEAK  5(1Q42.11) WILD-TYPE   42  856
                        clus
vv                       DEL PEAK  5(1Q42.11) MUTATED
  HISPANIC OR LATINO                                2
  NOT HISPANIC OR LATINO                           65
                        clus
vv                       DEL PEAK  5(1Q42.11) WILD-TYPE
  HISPANIC OR LATINO                                 42
  NOT HISPANIC OR LATINO                            856
[1] 2 2
[1] FALSE

Clustering(36) Variable = DEL PEAK  6(1Q44) MUTATION ANALYSIS
D36V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  6(1Q44) MUTATED    31  38
  DEL PEAK  6(1Q44) WILD-TYPE 449 560
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         69                        1009 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         38                         560 
$`DEL PEAK  6(1Q44) MUTATED`
TCGA-HT-A619 TCGA-06-1806 TCGA-06-5411 TCGA-12-3648 TCGA-14-0740 TCGA-14-0812 
       21.40        15.32         8.35        26.93        11.97         3.25 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1456 TCGA-19-1390 TCGA-19-2619 TCGA-19-A6J5 
       15.95         1.38        40.96        25.38         9.67        28.54 
TCGA-32-1986 TCGA-74-6575 TCGA-74-6577 TCGA-76-4925 TCGA-76-6193 TCGA-DU-5871 
       12.69        20.91         4.34         4.80         2.70        18.94 
TCGA-DU-6396 TCGA-DU-6542 TCGA-DU-7015 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-A5TS 
       75.16         2.40        90.77         5.10        23.74        31.69 
TCGA-DU-A7TA TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5322 TCGA-E1-A7YV TCGA-E1-A7YY 
       84.33        44.42        50.14       130.78        32.45       146.14 
TCGA-FG-7636 TCGA-FG-8185 TCGA-FG-A6J3 TCGA-HT-7477 TCGA-HT-7485 TCGA-HT-7857 
       17.88        14.24        22.26        24.26         4.01         0.23 
TCGA-HT-8113 TCGA-HW-A5KL TCGA-P5-A5F4 TCGA-P5-A780 TCGA-QH-A65S TCGA-QH-A6CW 
       29.59        28.87         7.59         2.37         2.53        13.61 
TCGA-S9-A6TS TCGA-S9-A6U9 TCGA-S9-A6WI TCGA-S9-A7R1 TCGA-TM-A84I TCGA-TM-A84T 
       62.17        95.93        84.99       169.84        28.08        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RW TCGA-02-0026 TCGA-02-0084 TCGA-02-0333 TCGA-02-2466 
       21.37        26.99        24.59        12.62         4.37        16.80 
TCGA-02-2485 TCGA-06-0145 TCGA-06-0149 TCGA-06-2558 TCGA-08-0386 TCGA-08-0392 
       15.45         2.33         8.61        12.49        18.02         0.72 
TCGA-08-0510 TCGA-12-0776 TCGA-12-0780 TCGA-19-0962 TCGA-19-1387 TCGA-19-1388 
        4.27         9.73        14.86         0.66         5.95        12.95 
TCGA-26-5133 TCGA-28-5215 TCGA-76-6660 
       14.86        11.01         3.75 

$`DEL PEAK  6(1Q44) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 
       20.45        18.64        45.60        42.77        59.38        11.74 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        3.55         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        2.73         3.75         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
        1.87         3.12         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
       21.73        15.65        25.68        14.73         6.77        59.77 
TCGA-12-3646 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       44.02        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       14.93         3.22         2.04        15.12         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1396 
       23.05        13.78         2.89        16.50        26.33         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.18         0.92         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.96         3.78         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        8.61        14.27         3.39         3.65         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        3.25         0.13         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 
       14.07        16.80        14.96        17.79        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       16.77        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        4.77        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
       11.84         0.20        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 
       25.58         3.45        14.33         8.22         7.50         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.17         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
        3.29        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA 
       23.90        34.45        18.64        36.20         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55       117.50         7.69        43.89        36.36        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.26        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       26.76        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84       117.40        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       23.31        41.98         2.76        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       95.11        20.98        22.29        11.41        26.76        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TI 
       17.98       139.04        51.52        37.38         7.50        38.89 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
        0.56        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       78.21        95.57        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ 
       19.46        12.43        16.18        21.30        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       15.32         0.76        36.82        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       18.44        15.35        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       13.68        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       39.09        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 
        2.50         5.56        13.78         0.23        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.14        16.83        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       68.32        69.27        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       24.92        31.63        12.76        20.71        19.00        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        9.44         5.88         7.96         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R 
        7.56        12.23        19.20         3.45         4.41        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6UA TCGA-S9-A6UB 
       29.85        32.61        35.15        98.24         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WL TCGA-S9-A6WM 
       75.25       135.22        85.55        38.56        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R2 
       20.68        15.06        18.54        28.37        27.16        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RG 
       24.79        33.24        25.38        18.61        14.93        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        45.93        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.09        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.25        89.72        22.72 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.90         7.73        10.62         7.33        15.91        25.71 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 
       11.34         9.27        16.21         3.35        12.92        15.32 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
       11.74        20.09        17.79        10.09        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.40         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.53        15.02        24.16         0.72        19.82 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       13.64        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        72.36         4.70         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       20.78        26.76        23.93         6.84         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 
       11.84        15.32        13.61        33.90         1.08         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 
        4.37         0.43        31.50         7.79         5.39       120.56 
TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        7.36        22.68        37.84         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       22.29         3.39        12.23        14.93        15.35        13.97 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0778 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.93        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
       14.53         3.98         4.14         2.24        11.24         1.35 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        5.39         2.04        28.93        19.30         0.79        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 
       50.53        19.10        53.19        13.28         3.91        26.07 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 
       16.37        11.77        21.90        10.75         9.07         4.64 
TCGA-26-1442 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       31.33         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 
        5.42         7.36        11.38         5.42         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                       0.23                        0.03 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                     169.84                      211.17 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                      15.45                       16.01 
[1] "0.2 - 169.8 (15.4)" "0.0 - 211.2 (16.0)"
[1] "hr=" "1.1"
D36V2, continuous
D36V3, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED    35  34
  DEL PEAK  6(1Q44) WILD-TYPE 538 478
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED     35   34
  DEL PEAK  6(1Q44) WILD-TYPE  538  478
                        clus
vv                       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  BRAIN                                         35                         538
  CENTRAL NERVOUS SYSTEM                        34                         478
[1] 2 2
[1] FALSE
D36V4, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED    32  37
  DEL PEAK  6(1Q44) WILD-TYPE 421 595
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED     32   37
  DEL PEAK  6(1Q44) WILD-TYPE  421  595
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  FEMALE                        32                         421
  MALE                          37                         595
[1] 2 2
[1] FALSE
D36V5, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED    14  51
  DEL PEAK  6(1Q44) WILD-TYPE 244 719
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED     14   51
  DEL PEAK  6(1Q44) WILD-TYPE  244  719
     clus
vv    DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  NO                         14                         244
  YES                        51                         719
[1] 2 2
[1] FALSE
D36V6, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  6(1Q44) MUTATED            13                             3
  DEL PEAK  6(1Q44) WILD-TYPE         181                            27
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  6(1Q44) MUTATED                 10                11
  DEL PEAK  6(1Q44) WILD-TYPE              119               178
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK  6(1Q44) MUTATED                     1
  DEL PEAK  6(1Q44) WILD-TYPE                  17
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  6(1Q44) MUTATED                                31
  DEL PEAK  6(1Q44) WILD-TYPE                             494
D36V7, multiclass
                                 clus
vv                                DEL PEAK  6(1Q44) MUTATED
  ASTROCYTOMA                                            13
  GLIOBLASTOMA MULTIFORME (GBM)                           3
  OLIGOASTROCYTOMA                                       10
  OLIGODENDROGLIOMA                                      11
  TREATED PRIMARY GBM                                     1
  UNTREATED PRIMARY (DE NOVO) GBM                        31
                                 clus
vv                                DEL PEAK  6(1Q44) WILD-TYPE
  ASTROCYTOMA                                             181
  GLIOBLASTOMA MULTIFORME (GBM)                            27
  OLIGOASTROCYTOMA                                        119
  OLIGODENDROGLIOMA                                       178
  TREATED PRIMARY GBM                                      17
  UNTREATED PRIMARY (DE NOVO) GBM                         494
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  6(1Q44) MUTATED                                  0     1
  DEL PEAK  6(1Q44) WILD-TYPE                                1    20
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  6(1Q44) MUTATED                           5    59
  DEL PEAK  6(1Q44) WILD-TYPE                        66   900
D36V8, multiclass
                                  clus
vv                                 DEL PEAK  6(1Q44) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    1
  BLACK OR AFRICAN AMERICAN                                5
  WHITE                                                   59
                                  clus
vv                                 DEL PEAK  6(1Q44) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     20
  BLACK OR AFRICAN AMERICAN                                 66
  WHITE                                                    900
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V9, binary
                             cls
clus                            0   1
  DEL PEAK  6(1Q44) MUTATED     2  57
  DEL PEAK  6(1Q44) WILD-TYPE  42 864
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  6(1Q44) MUTATED      2   57
  DEL PEAK  6(1Q44) WILD-TYPE   42  864
                        clus
vv                       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  HISPANIC OR LATINO                             2                          42
  NOT HISPANIC OR LATINO                        57                         864
[1] 2 2
[1] FALSE

Clustering(37) Variable = DEL PEAK  7(2Q22.1) MUTATION ANALYSIS
D37V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  7(2Q22.1) MUTATED    17  51
  DEL PEAK  7(2Q22.1) WILD-TYPE 463 547
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           68                          1010 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           51                           547 
$`DEL PEAK  7(2Q22.1) MUTATED`
TCGA-06-5416 TCGA-06-5856 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-12-0615 TCGA-12-1598 
        6.71         3.75         1.87         3.12        15.35        15.65 
TCGA-12-1600 TCGA-12-3646 TCGA-14-0736 TCGA-14-0783 TCGA-14-0812 TCGA-19-1390 
       14.73        44.02        15.12         6.21         3.25        25.38 
TCGA-19-1392 TCGA-19-2625 TCGA-19-5956 TCGA-26-A7UX TCGA-28-2509 TCGA-32-1978 
        3.65         4.08        22.49        19.33         4.77        15.85 
TCGA-32-2615 TCGA-4W-AA9R TCGA-76-4934 TCGA-76-6191 TCGA-DB-5277 TCGA-DH-5142 
       15.95         4.08         2.53        16.70        50.86        63.88 
TCGA-DH-A7UR TCGA-DU-5851 TCGA-DU-6408 TCGA-DU-7014 TCGA-DU-A7T6 TCGA-E1-A7YH 
       54.25        17.46       114.08       117.40        17.98        93.21 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-FG-5963 TCGA-HT-7477 TCGA-HT-7692 
       19.46        12.43        16.18        25.48        24.26         2.96 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HW-7493 TCGA-P5-A5F6 TCGA-P5-A733 TCGA-QH-A6CW 
       16.83        17.52        69.27         1.28        13.61        13.61 
TCGA-TM-A84Q TCGA-02-0024 TCGA-02-0059 TCGA-02-0074 TCGA-02-0075 TCGA-02-0289 
       25.38        53.10         9.57        10.19        20.84        14.20 
TCGA-02-0338 TCGA-02-2466 TCGA-06-0152 TCGA-06-0182 TCGA-06-0188 TCGA-06-0414 
       10.59        16.80        12.33         3.65        44.58        35.11 
TCGA-06-0649 TCGA-06-0749 TCGA-06-1087 TCGA-06-6390 TCGA-06-6694 TCGA-12-0821 
        2.10         2.70         4.04         5.39         7.36        10.62 
TCGA-12-0826 TCGA-12-1099 TCGA-14-0867 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 
       27.78         4.14         2.04        50.53        53.19        16.37 
TCGA-19-1388 TCGA-28-5215 
       12.95        11.01 

$`DEL PEAK  7(2Q22.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M 
       20.45        18.64        21.40        45.60        42.77        59.38 
TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       15.32        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.98         8.55         2.73         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1092 TCGA-12-1599 
       26.79         2.56        14.60        17.72        21.73        25.68 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
        6.77        59.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        0.95        23.05        13.78         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.18         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.67        12.43         0.99         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.42        17.59        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
        9.14        21.24        13.97         6.41         8.61        14.27 
TCGA-19-0964 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.39         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         7.53         0.16        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
       12.10         1.78        14.07        16.80        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       28.54        10.03        13.87         9.73         7.13         9.37 
TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        9.40         8.88        18.97         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        16.77        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        0.66         6.74        15.39        21.07         0.49         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
       11.84         0.20        15.12        12.46         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.80         4.54         3.09         3.65         9.17        36.85 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        5.03        23.90        34.45        18.64        36.20         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55       117.50         7.69        43.89        36.36 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       60.10        40.18         0.26        21.01        53.62         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       17.69        26.76        37.38        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5143 TCGA-DH-5144 
       17.88        30.74        16.18        19.96        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT 
       30.21        27.81        17.19        17.19        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5853 
       13.71        18.61        18.02        14.56         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       19.89        16.83        94.52         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       26.76        21.30       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
        7.50        44.42        38.89         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YI TCGA-E1-A7YM TCGA-E1-A7YO 
      130.78        14.30        29.13         3.65        21.30        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
        0.20        47.77        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       22.26        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        1.81        16.14        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        28.87        20.71        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        5.88         7.96         7.59         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       11.64        10.95         9.01         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       33.24        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 
       43.40        45.80        46.88        37.71        20.81         7.63 
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
       11.77         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.59        20.61        87.06        77.65        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.22        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        8.35         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
        3.98        13.87        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21         3.35        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        4.18        88.14        20.25        69.90        73.84        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       15.02        24.16         0.72        19.82        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.70         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.80        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
       16.57        20.78        26.76        23.93         6.84        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
       11.84        15.32        13.61        33.90         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6693 
        5.98         4.37         0.43        31.50         7.79       120.56 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        37.84         4.18       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.72        12.56         4.27        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.68        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       18.41         7.56        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       24.79        18.48        23.51        38.76         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
      127.59         5.82         7.59        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 
       15.85         9.11        14.53         3.98         2.24        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        1.35         5.39        28.93        19.30         0.79        13.78 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 
       19.10        13.28         3.91        26.07        11.77        21.90 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 
        0.66        10.75         9.07         5.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       14.86         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        5.42         7.36        11.38         5.42         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                         1.28                          0.03 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                       117.40                        211.17 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                       15.235                        16.110 
[1] "1.3 - 117.4 (15.2)" "0.0 - 211.2 (16.1)"
[1] "hr=" "1.5"
D37V2, continuous
D37V3, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED    47  21
  DEL PEAK  7(2Q22.1) WILD-TYPE 526 491
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED     47   21
  DEL PEAK  7(2Q22.1) WILD-TYPE  526  491
                        clus
vv                       DEL PEAK  7(2Q22.1) MUTATED
  BRAIN                                           47
  CENTRAL NERVOUS SYSTEM                          21
                        clus
vv                       DEL PEAK  7(2Q22.1) WILD-TYPE
  BRAIN                                            526
  CENTRAL NERVOUS SYSTEM                           491
[1] 2 2
[1] FALSE
D37V4, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED    29  39
  DEL PEAK  7(2Q22.1) WILD-TYPE 424 593
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED     29   39
  DEL PEAK  7(2Q22.1) WILD-TYPE  424  593
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  FEMALE                          29                           424
  MALE                            39                           593
[1] 2 2
[1] FALSE
D37V5, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED    12  52
  DEL PEAK  7(2Q22.1) WILD-TYPE 246 718
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED     12   52
  DEL PEAK  7(2Q22.1) WILD-TYPE  246  718
     clus
vv    DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  NO                           12                           246
  YES                          52                           718
[1] 2 2
[1] FALSE
D37V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  7(2Q22.1) MUTATED            13                             5
  DEL PEAK  7(2Q22.1) WILD-TYPE         181                            25
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  7(2Q22.1) MUTATED                  3                 5
  DEL PEAK  7(2Q22.1) WILD-TYPE              126               184
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  7(2Q22.1) MUTATED                     2
  DEL PEAK  7(2Q22.1) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  7(2Q22.1) MUTATED                                40
  DEL PEAK  7(2Q22.1) WILD-TYPE                             485
D37V7, multiclass
                                 clus
vv                                DEL PEAK  7(2Q22.1) MUTATED
  ASTROCYTOMA                                              13
  GLIOBLASTOMA MULTIFORME (GBM)                             5
  OLIGOASTROCYTOMA                                          3
  OLIGODENDROGLIOMA                                         5
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          40
                                 clus
vv                                DEL PEAK  7(2Q22.1) WILD-TYPE
  ASTROCYTOMA                                               181
  GLIOBLASTOMA MULTIFORME (GBM)                              25
  OLIGOASTROCYTOMA                                          126
  OLIGODENDROGLIOMA                                         184
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           485
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  7(2Q22.1) MUTATED                                  0     0
  DEL PEAK  7(2Q22.1) WILD-TYPE                                1    21
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  7(2Q22.1) MUTATED                           7    61
  DEL PEAK  7(2Q22.1) WILD-TYPE                        64   898
D37V8, multiclass
                                  clus
vv                                 DEL PEAK  7(2Q22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      0
  BLACK OR AFRICAN AMERICAN                                  7
  WHITE                                                     61
                                  clus
vv                                 DEL PEAK  7(2Q22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       21
  BLACK OR AFRICAN AMERICAN                                   64
  WHITE                                                      898
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V9, binary
                               cls
clus                              0   1
  DEL PEAK  7(2Q22.1) MUTATED     0  60
  DEL PEAK  7(2Q22.1) WILD-TYPE  44 861
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(2Q22.1) MUTATED      0   60
  DEL PEAK  7(2Q22.1) WILD-TYPE   44  861
                        clus
vv                       DEL PEAK  7(2Q22.1) MUTATED
  HISPANIC OR LATINO                               0
  NOT HISPANIC OR LATINO                          60
                        clus
vv                       DEL PEAK  7(2Q22.1) WILD-TYPE
  HISPANIC OR LATINO                                44
  NOT HISPANIC OR LATINO                           861
[1] 2 2
[1] FALSE

Clustering(38) Variable = DEL PEAK  8(2Q37.1) MUTATION ANALYSIS
D38V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  8(2Q37.1) MUTATED    52  69
  DEL PEAK  8(2Q37.1) WILD-TYPE 428 529
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          121                           957 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           69                           529 
$`DEL PEAK  8(2Q37.1) MUTATED`
TCGA-DH-A66B TCGA-06-5416 TCGA-06-5856 TCGA-06-A6S0 TCGA-12-1600 TCGA-12-3646 
       42.05         6.71         3.75         3.12        14.73        44.02 
TCGA-12-5301 TCGA-14-0783 TCGA-14-0812 TCGA-14-1821 TCGA-14-4157 TCGA-16-1047 
        2.04         6.21         3.25        17.79         3.42         4.57 
TCGA-19-1390 TCGA-19-1392 TCGA-19-2625 TCGA-19-5956 TCGA-27-2521 TCGA-28-1750 
       25.38         3.65         4.08        22.49        16.77         8.35 
TCGA-28-2509 TCGA-32-1978 TCGA-32-2495 TCGA-32-2615 TCGA-41-3393 TCGA-41-6646 
        4.77        15.85        15.02        15.95         4.44        12.46 
TCGA-4W-AA9R TCGA-76-4934 TCGA-76-6657 TCGA-CS-6666 TCGA-DB-5270 TCGA-DB-5277 
        4.08         2.53         5.03        46.95       122.73        50.86 
TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A7UR TCGA-DU-5855 TCGA-DU-6395 TCGA-DU-6396 
       63.88        30.21        54.25         6.81        49.02        75.16 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7014 
       94.52       114.08         2.40        62.96       156.23       117.40 
TCGA-DU-7304 TCGA-DU-8167 TCGA-DU-A5TR TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A7T6 
       23.31        15.48        29.85        33.96        20.98        17.98 
TCGA-DU-A7TI TCGA-E1-5304 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YK TCGA-F6-A8O4 
       38.89        41.13        29.13        93.21        12.43         0.20 
TCGA-FG-A6J3 TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7601 TCGA-HT-7606 TCGA-HT-7690 
       22.26        16.54        24.26         5.03        17.29         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7860 TCGA-HT-8013 TCGA-HT-A618 
        2.96        17.52        19.23         0.49        63.55        16.83 
TCGA-HT-A61B TCGA-HW-7493 TCGA-HW-8321 TCGA-HW-A5KK TCGA-IK-7675 TCGA-P5-A5EW 
       17.52        69.27        42.54        12.76        19.00         6.71 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A733 TCGA-QH-A6CV TCGA-QH-A6CW 
        1.28         0.23        10.42        13.61        14.53        13.61 
TCGA-QH-A6X3 TCGA-RY-A83Z TCGA-S9-A6TV TCGA-S9-A6U6 TCGA-S9-A6WG TCGA-S9-A6WQ 
       10.29         9.90        18.77        35.15        85.55        14.07 
TCGA-S9-A89Z TCGA-TM-A7CA TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84Q TCGA-TQ-A7RF 
       20.48        34.78        28.08        40.83        25.38        21.37 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-02-0025 TCGA-02-0059 TCGA-02-0074 TCGA-02-0075 
       44.09        36.69        42.74         9.57        10.19        20.84 
TCGA-02-0080 TCGA-02-0084 TCGA-02-0104 TCGA-02-0338 TCGA-06-0152 TCGA-06-0182 
       89.72        12.62        65.00        10.59        12.33         3.65 
TCGA-06-0188 TCGA-06-0221 TCGA-06-0414 TCGA-06-0649 TCGA-06-2562 TCGA-06-6694 
       44.58        19.82        35.11         2.10        12.56         7.36 
TCGA-08-0351 TCGA-08-0355 TCGA-08-0512 TCGA-12-0703 TCGA-12-0826 TCGA-12-1099 
       65.33        24.56        42.15        20.38        27.78         4.14 
TCGA-14-0867 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 TCGA-19-1388 TCGA-28-5215 
        2.04        50.53        53.19        16.37        12.95        11.01 
TCGA-76-6280 
       11.38 

$`DEL PEAK  8(2Q37.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        8.55         2.73         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 
        1.87         2.56        14.60        17.72        15.35        21.73 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       15.65        25.68         6.77        59.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0862 
       15.12        11.97         0.95        23.05        13.78         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.05        58.78        23.11         7.10         1.15        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-16-0848 TCGA-16-1045 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        3.78        17.59        29.03        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
       21.24        13.97         6.41         8.61        14.27         3.39 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        1.08         7.53         0.16        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 
        1.78        14.07        16.80        14.96        17.79        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.76        18.08        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         9.21         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.22         1.55         2.83         0.13         0.66         6.74 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       15.39        21.07         0.49         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        25.18        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9S 
        9.53         0.99        11.84         0.20        15.12         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
       20.98         4.83        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 TCGA-CS-6668 
        6.38        17.69        26.76        37.38        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
       49.12        81.96        75.25        47.93        72.92        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D 
       30.74        16.18        19.96        46.06        24.59        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        17.19        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       22.42        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-7006 
       11.64       133.74        19.89        16.83         7.96        11.47 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       44.02        25.91        60.30        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       14.17        33.27        31.69        24.43        26.17        24.99 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       25.55        21.57        95.11        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
       44.42         0.56        50.14        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YI 
      134.27        78.21        95.57       130.78        14.30         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       19.46        16.18        21.30        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5963 
      145.05        32.35        39.48         0.23        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z 
       14.76        21.53        15.02        16.44        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       36.66        48.69         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 
       11.54        40.11         0.13         0.03         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
      172.77         4.01        29.85        23.18       122.47         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7694 
       42.74         0.10        31.69        14.96         0.10         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 
       14.53        39.48        39.09         0.23        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.93         1.81        16.14        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ 
       68.32        35.44        39.75        40.01        24.92        31.63 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EX 
       28.87        20.71        14.40        14.40         0.23         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         9.44         5.88         7.96         7.59 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A735 TCGA-P5-A736 
       13.25        11.64        10.95         9.01         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       12.23        13.41         9.17        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       94.03        32.65        30.87         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        62.17        87.12        41.10        40.93 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       18.64        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       98.63        31.59        18.71        54.77        48.33        49.32 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84J TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.16        24.79        33.24        18.61        14.93        23.80 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RN TCGA-TQ-A7RO 
       19.69        15.98         2.04        40.41        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        45.93        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.31         6.87        14.73         3.22 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.09        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0079 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       27.25        22.72        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        27.02        11.67        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
       25.71         4.37        25.12        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 
       17.79        10.09         8.61        19.46        46.59        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
       20.25        69.90        73.84        27.22        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        8.42         7.40        11.84         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
        0.72        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        9.01         0.26        72.36         4.70         9.57         3.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       12.62         5.75         5.75         9.80        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       26.76        23.93         6.84         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       15.32        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       17.65        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 
        0.43        31.50         7.79         5.39       120.56        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       12.16         9.80        29.23         1.28         8.42        17.95 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       18.02        15.35        13.97         0.72        12.56         4.27 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.08        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        7.27        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 
       25.97        26.66        12.13         3.65        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.76        24.79        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 TCGA-14-1037 
        2.24        11.24         1.35         5.39        28.93        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 
        0.79        13.78        19.10        13.28         3.91        26.07 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       11.77        21.90         0.66        10.75         9.07         5.95 
TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 
        4.64        31.33        14.86         5.49         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        2.33         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
       14.53        11.77        31.27        23.44        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6283 TCGA-76-6660 
       22.68        12.76         5.42         7.36         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                       156.23                        211.17 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                        17.52                         15.85 
[1] "0.1 - 156.2 (17.5)" "0.0 - 211.2 (15.8)"
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED    55  66
  DEL PEAK  8(2Q37.1) WILD-TYPE 518 446
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED     55   66
  DEL PEAK  8(2Q37.1) WILD-TYPE  518  446
                        clus
vv                       DEL PEAK  8(2Q37.1) MUTATED
  BRAIN                                           55
  CENTRAL NERVOUS SYSTEM                          66
                        clus
vv                       DEL PEAK  8(2Q37.1) WILD-TYPE
  BRAIN                                            518
  CENTRAL NERVOUS SYSTEM                           446
[1] 2 2
[1] FALSE
D38V4, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED    54  67
  DEL PEAK  8(2Q37.1) WILD-TYPE 399 565
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED     54   67
  DEL PEAK  8(2Q37.1) WILD-TYPE  399  565
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  FEMALE                          54                           399
  MALE                            67                           565
[1] 2 2
[1] FALSE
D38V5, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED    23  89
  DEL PEAK  8(2Q37.1) WILD-TYPE 235 681
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED     23   89
  DEL PEAK  8(2Q37.1) WILD-TYPE  235  681
     clus
vv    DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  NO                           23                           235
  YES                          89                           681
[1] 2 2
[1] FALSE
D38V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  8(2Q37.1) MUTATED            34                             3
  DEL PEAK  8(2Q37.1) WILD-TYPE         160                            27
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  8(2Q37.1) MUTATED                 20                12
  DEL PEAK  8(2Q37.1) WILD-TYPE              109               177
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK  8(2Q37.1) MUTATED                     1
  DEL PEAK  8(2Q37.1) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  8(2Q37.1) MUTATED                                51
  DEL PEAK  8(2Q37.1) WILD-TYPE                             474
D38V7, multiclass
                                 clus
vv                                DEL PEAK  8(2Q37.1) MUTATED
  ASTROCYTOMA                                              34
  GLIOBLASTOMA MULTIFORME (GBM)                             3
  OLIGOASTROCYTOMA                                         20
  OLIGODENDROGLIOMA                                        12
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          51
                                 clus
vv                                DEL PEAK  8(2Q37.1) WILD-TYPE
  ASTROCYTOMA                                               160
  GLIOBLASTOMA MULTIFORME (GBM)                              27
  OLIGOASTROCYTOMA                                          109
  OLIGODENDROGLIOMA                                         177
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           474
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  8(2Q37.1) MUTATED                                  0     2
  DEL PEAK  8(2Q37.1) WILD-TYPE                                1    19
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  8(2Q37.1) MUTATED                           4   114
  DEL PEAK  8(2Q37.1) WILD-TYPE                        67   845
D38V8, multiclass
                                  clus
vv                                 DEL PEAK  8(2Q37.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      2
  BLACK OR AFRICAN AMERICAN                                  4
  WHITE                                                    114
                                  clus
vv                                 DEL PEAK  8(2Q37.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       19
  BLACK OR AFRICAN AMERICAN                                   67
  WHITE                                                      845
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V9, binary
                               cls
clus                              0   1
  DEL PEAK  8(2Q37.1) MUTATED     5 107
  DEL PEAK  8(2Q37.1) WILD-TYPE  39 814
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(2Q37.1) MUTATED      5  107
  DEL PEAK  8(2Q37.1) WILD-TYPE   39  814
                        clus
vv                       DEL PEAK  8(2Q37.1) MUTATED
  HISPANIC OR LATINO                               5
  NOT HISPANIC OR LATINO                         107
                        clus
vv                       DEL PEAK  8(2Q37.1) WILD-TYPE
  HISPANIC OR LATINO                                39
  NOT HISPANIC OR LATINO                           814
[1] 2 2
[1] FALSE

Clustering(39) Variable = DEL PEAK  9(3P21.31) MUTATION ANALYSIS
D39V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  9(3P21.31) MUTATED    45  63
  DEL PEAK  9(3P21.31) WILD-TYPE 435 535
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           108                            970 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                            63                            535 
$`DEL PEAK  9(3P21.31) MUTATED`
TCGA-19-A6J4 TCGA-DU-7300 TCGA-HT-A619 TCGA-06-1806 TCGA-06-5416 TCGA-06-5859 
        3.98        62.01        21.40        15.32         6.71         4.57 
TCGA-06-A7TL TCGA-12-3653 TCGA-12-5295 TCGA-14-0862 TCGA-14-1458 TCGA-14-1823 
       17.72        14.53        14.93         2.89         6.67        17.85 
TCGA-14-3477 TCGA-19-0964 TCGA-19-2625 TCGA-26-1439 TCGA-26-1440 TCGA-28-1756 
        3.78         3.39         4.08        13.87         9.73         2.83 
TCGA-32-1991 TCGA-32-2615 TCGA-41-3393 TCGA-76-4929 TCGA-DB-5275 TCGA-DB-5277 
       16.93        15.95         4.44         3.65        47.93        50.86 
TCGA-DH-A66D TCGA-DU-6396 TCGA-DU-6542 TCGA-DU-7010 TCGA-DU-8161 TCGA-DU-8168 
       27.81        75.16         2.40        14.99        23.74        14.17 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A76R TCGA-DU-A7TA TCGA-E1-5304 TCGA-E1-5322 
       24.43        26.17        21.30        84.33        41.13       130.78 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YQ TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       19.46        12.43        51.88         0.76        32.45        36.82 
TCGA-HT-7469 TCGA-HT-7473 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7482 TCGA-HT-7606 
       11.54        16.54        24.26         6.38       106.95        17.29 
TCGA-HT-7690 TCGA-HT-8111 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-IK-7675 
        0.10         0.23        15.72        20.22        27.35        19.00 
TCGA-P5-A5F6 TCGA-P5-A77W TCGA-P5-A780 TCGA-QH-A6X9 TCGA-S9-A6WG TCGA-S9-A7IZ 
        1.28        19.20         2.37         1.91        85.55        19.99 
TCGA-S9-A7J0 TCGA-S9-A89V TCGA-TM-A84H TCGA-TM-A84J TCGA-TQ-A7RH TCGA-TQ-A7RW 
       20.02        18.71        30.44        24.16        15.98        26.99 
TCGA-VM-A8C8 TCGA-VV-A829 TCGA-WY-A859 TCGA-WY-A85E TCGA-02-0014 TCGA-02-0015 
       45.93        37.05        39.88        20.81        82.59        20.61 
TCGA-02-0055 TCGA-02-0083 TCGA-02-0084 TCGA-02-0106 TCGA-02-0113 TCGA-02-0114 
        2.50        22.72        12.62        11.67        92.65        99.98 
TCGA-02-0266 TCGA-02-0330 TCGA-02-0432 TCGA-02-2486 TCGA-06-0128 TCGA-06-0152 
       17.72        15.91        47.11        20.32        22.72        12.33 
TCGA-06-0166 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0409 TCGA-06-0745 
        5.85        24.16        19.82        13.64        72.36         7.86 
TCGA-06-0878 TCGA-06-1087 TCGA-06-6390 TCGA-08-0245 TCGA-08-0246 TCGA-08-0386 
        7.17         4.04         5.39        37.84         4.18        18.02 
TCGA-08-0390 TCGA-08-0516 TCGA-08-0517 TCGA-12-0776 TCGA-12-0826 TCGA-15-1447 
       13.97        19.59        58.68         9.73        27.78        53.19 
TCGA-15-1449 TCGA-16-0849 TCGA-19-0955 TCGA-19-1388 TCGA-28-5218 TCGA-28-5220 
       13.28        26.07        11.77        12.95         5.16        12.76 

$`DEL PEAK  9(3P21.31) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
       45.60        42.77        59.38        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         8.55         2.73         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        6.15         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96        26.79         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.60        15.35        21.73        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       12.69        34.92         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0865 
        0.95         6.21        23.05        13.78         3.25        16.50 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       26.33        15.95         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
       40.96        12.43         0.99         1.97        17.79         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 
        5.88         7.17        17.49         7.96         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-1390 TCGA-19-1392 
       13.97         6.41         8.61        14.27        25.38         3.65 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        1.08         7.53         0.16        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
        1.78        22.49        14.07        16.80        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       28.54        10.03         7.13         9.37         9.40         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
       18.97        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        16.77        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        8.48         1.22         1.55         0.13         0.66         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        4.77        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 
       19.50         1.18         4.67        12.69        14.86        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78        15.02         8.84        22.78        25.18        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 
       13.35         8.94         9.53         0.99        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
       15.12        12.46         4.08         1.45        25.58         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.91         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         9.17         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        5.03        23.90        34.45        18.64        36.20         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55       117.50         7.69        43.89        36.36 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       60.10        40.18         0.26        21.01        53.62         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       17.69        26.76        37.38        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 
       49.12       122.73        81.96        75.25        72.92        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        19.96        63.88        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       30.21        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 
       15.16       211.17        52.11        22.42        49.02        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 
       19.89        16.83        94.52       114.08         7.96        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
       62.96       156.23       154.36       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76         5.10        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       19.13        16.96        15.48        33.27        29.85        31.69 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB 
       22.29        11.41        26.76        17.98       139.04        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 
       37.38         7.50        44.42        38.89         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YL TCGA-E1-A7YM 
       14.30        29.13        93.21         3.65        16.18        21.30 
TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       75.02        15.32       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 
        6.67        40.11         0.13         0.03         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7485 
        6.54        40.34        75.19        95.93       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 
        5.03        29.85        23.18       122.47         4.57         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        31.69        14.96         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS 
        5.56        13.78        29.59        34.19        28.27         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       26.04         0.13         0.07         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C 
       16.93         1.81        16.14        16.83        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       45.44        41.49        68.32        69.27        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       20.71        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         9.44         5.88         7.96         7.59 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77X TCGA-P5-A781 
       13.61         9.60         7.56        12.23         3.45         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA TCGA-QH-A6XC 
       10.29        14.53        16.34        16.73        16.50        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I 
       65.39        24.92        16.18        59.05        40.64        28.08 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        21.37        19.69         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       33.93        61.41        31.36        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A7QS 
        7.89        39.16        20.02        23.47        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        51.06        13.32        43.96        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       46.88        37.71         7.63        11.77         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0016 TCGA-02-0021 
       23.18        10.59        35.41        20.71        87.06        77.65 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       20.12        53.10        42.74        24.59        12.16        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
        2.83        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
        6.87        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       89.72        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0115 TCGA-02-0116 
       27.02        65.00        17.65        23.18        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.54        16.93        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.32        15.45         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
       20.38        47.61         6.94         3.98        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       10.09         8.61        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       10.65        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.04        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        8.42         7.40        11.84         0.53        15.02         0.72 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.70         9.57         3.16        35.11        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
       46.88         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79        11.84        15.32        13.61        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
       16.64         5.98         4.37         0.43        31.50         7.79 
TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
      120.56         7.36        22.68       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 
        3.39        12.23        14.93        15.35         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        4.27        42.15        11.08        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        7.27        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85        43.23         7.63        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.76        24.79        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-16-0846 TCGA-16-0850 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
        3.91        16.37        21.90         0.66        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
        5.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 
       13.64        22.68         5.42         7.36        11.38         5.42 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        3.75         1.61        17.72        26.30 

  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                         17.72                          15.85 
[1] "0.1 - 130.8 (17.7)" "0.0 - 211.2 (15.8)"
[1] "hr=" "1"  
D39V2, continuous
D39V3, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED    58  51
  DEL PEAK  9(3P21.31) WILD-TYPE 515 461
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED     58   51
  DEL PEAK  9(3P21.31) WILD-TYPE  515  461
                        clus
vv                       DEL PEAK  9(3P21.31) MUTATED
  BRAIN                                            58
  CENTRAL NERVOUS SYSTEM                           51
                        clus
vv                       DEL PEAK  9(3P21.31) WILD-TYPE
  BRAIN                                             515
  CENTRAL NERVOUS SYSTEM                            461
[1] 2 2
[1] FALSE
D39V4, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED    46  63
  DEL PEAK  9(3P21.31) WILD-TYPE 407 569
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED     46   63
  DEL PEAK  9(3P21.31) WILD-TYPE  407  569
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  FEMALE                           46                            407
  MALE                             63                            569
[1] 2 2
[1] FALSE
D39V5, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED    13  91
  DEL PEAK  9(3P21.31) WILD-TYPE 245 679
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED     13   91
  DEL PEAK  9(3P21.31) WILD-TYPE  245  679
     clus
vv    DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  NO                            13                            245
  YES                           91                            679
[1] 2 2
[1] FALSE
D39V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK  9(3P21.31) MUTATED            19                             3
  DEL PEAK  9(3P21.31) WILD-TYPE         175                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK  9(3P21.31) MUTATED                 17                15
  DEL PEAK  9(3P21.31) WILD-TYPE              112               174
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK  9(3P21.31) MUTATED                     3
  DEL PEAK  9(3P21.31) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK  9(3P21.31) MUTATED                                52
  DEL PEAK  9(3P21.31) WILD-TYPE                             473
D39V7, multiclass
                                 clus
vv                                DEL PEAK  9(3P21.31) MUTATED
  ASTROCYTOMA                                               19
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                          17
  OLIGODENDROGLIOMA                                         15
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                           52
                                 clus
vv                                DEL PEAK  9(3P21.31) WILD-TYPE
  ASTROCYTOMA                                                175
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           112
  OLIGODENDROGLIOMA                                          174
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            473
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK  9(3P21.31) MUTATED                                  0     2
  DEL PEAK  9(3P21.31) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  9(3P21.31) MUTATED                           9    97
  DEL PEAK  9(3P21.31) WILD-TYPE                        62   862
D39V8, multiclass
                                  clus
vv                                 DEL PEAK  9(3P21.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   9
  WHITE                                                      97
                                  clus
vv                                 DEL PEAK  9(3P21.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    62
  WHITE                                                       862
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V9, binary
                                cls
clus                               0   1
  DEL PEAK  9(3P21.31) MUTATED     7  92
  DEL PEAK  9(3P21.31) WILD-TYPE  37 829
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3P21.31) MUTATED      7   92
  DEL PEAK  9(3P21.31) WILD-TYPE   37  829
                        clus
vv                       DEL PEAK  9(3P21.31) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                           92
                        clus
vv                       DEL PEAK  9(3P21.31) WILD-TYPE
  HISPANIC OR LATINO                                 37
  NOT HISPANIC OR LATINO                            829
[1] 2 2
[1] FALSE

Clustering(40) Variable = DEL PEAK 10(3Q13.31) MUTATION ANALYSIS
D40V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 10(3Q13.31) MUTATED    31  64
  DEL PEAK 10(3Q13.31) WILD-TYPE 449 534
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            95                            983 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            64                            534 
$`DEL PEAK 10(3Q13.31) MUTATED`
TCGA-19-A6J4 TCGA-DU-7300 TCGA-DU-A76O TCGA-HT-A619 TCGA-06-1806 TCGA-06-5859 
        3.98        62.01        17.16        21.40        15.32         4.57 
TCGA-06-A5U1 TCGA-12-1600 TCGA-12-3651 TCGA-12-3653 TCGA-14-0812 TCGA-14-1458 
        1.87        14.73        12.69        14.53         3.25         6.67 
TCGA-14-1823 TCGA-19-2621 TCGA-26-1439 TCGA-28-1752 TCGA-28-1757 TCGA-32-1973 
       17.85         1.08        13.87         8.48         0.13        21.07 
TCGA-32-2615 TCGA-76-4929 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-5281 TCGA-DU-6402 
       15.95         3.65        46.95        50.86        78.28         7.04 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7014 TCGA-DU-8167 TCGA-DU-A5TU TCGA-DU-A5TW 
        2.40        62.96       117.40        15.48        26.17        24.99 
TCGA-DU-A76K TCGA-DU-A76R TCGA-E1-5302 TCGA-E1-A7YH TCGA-E1-A7YQ TCGA-E1-A7YV 
       11.41        21.30        50.14        93.21        51.88        32.45 
TCGA-E1-A7Z6 TCGA-FG-5963 TCGA-HT-7469 TCGA-HT-7603 TCGA-HT-7606 TCGA-HT-8111 
       32.35        25.48        11.54        23.18        17.29         0.23 
TCGA-HT-8564 TCGA-HW-7489 TCGA-HW-8321 TCGA-IK-7675 TCGA-P5-A5F2 TCGA-P5-A5F6 
       15.72        41.49        42.54        19.00         7.96         1.28 
TCGA-P5-A733 TCGA-P5-A77W TCGA-P5-A780 TCGA-S9-A6TV TCGA-TM-A84J TCGA-VM-A8C8 
       13.61        19.20         2.37        18.77        24.16        45.93 
TCGA-WY-A85C TCGA-WY-A85E TCGA-02-0001 TCGA-02-0021 TCGA-02-0054 TCGA-02-0055 
       46.88        20.81        11.77        77.65         6.54         2.50 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0084 TCGA-02-0113 TCGA-02-0330 TCGA-02-0332 
        6.02        28.70        12.62        92.65        15.91        25.71 
TCGA-02-2466 TCGA-06-0128 TCGA-06-0152 TCGA-06-0182 TCGA-06-0214 TCGA-06-0216 
       16.80        22.72        12.33         3.65        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0409 TCGA-06-2569 TCGA-06-6389 TCGA-06-6390 
        0.72        19.82        72.36         0.43         7.79         5.39 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0386 TCGA-08-0390 TCGA-08-0516 TCGA-12-0691 
       37.84         4.18        18.02        13.97        19.59        12.13 
TCGA-12-0773 TCGA-12-0776 TCGA-12-0826 TCGA-12-1089 TCGA-12-1093 TCGA-14-0871 
       43.23         9.73        27.78         5.82        15.98        28.93 
TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 TCGA-28-5220 TCGA-76-6280 
       53.19        13.28        12.95        12.76        11.38 

$`DEL PEAK 10(3Q13.31) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 
       23.90        20.09        17.82        20.45        18.64        45.60 
TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
       42.77        59.38        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        6.15         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.77         4.96        26.79         3.12         2.56        14.60 
TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 
       17.72        15.35        21.73        15.65        25.68         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       59.77        44.02        26.93        15.22        10.95        34.92 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       14.93         3.22         2.04        15.12        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        6.21        23.05        13.78         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.18         0.92        40.96 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.79         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 
        7.17        17.49         7.96         3.78         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 
       13.97         6.41         8.61        14.27         3.39        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       12.10         1.78        22.49        14.07        16.80        14.96 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       17.79        28.54        10.03         9.73         7.13         9.37 
TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        9.40         8.88        18.97        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        16.77        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2502 
        8.35         7.63         1.22         1.55         2.83         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        6.74         4.77        15.39         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
       11.84         0.20        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
        7.50         4.80         4.54         3.09         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       36.20         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        36.36        60.10        40.18         0.26        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 
       53.62         6.38        17.69        26.76        37.38        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA 
       72.92        91.13        44.52        36.56        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
        7.96        11.47       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP 
       20.68        21.40        19.13        16.96        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       29.85        31.69        24.43        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A7T6 TCGA-DU-A7T8 
       95.11        20.98        22.29        26.76        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
        0.56        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YI 
       78.21        95.57       130.78        14.30        29.13         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS 
       19.46        12.43        16.18        21.30        75.02        15.32 
TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
        0.76        36.82       146.14        13.08        73.48       145.05 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       39.48         0.23         0.20        47.77        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 
       48.69         5.72        27.52         0.10         6.67        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7605 
      172.77         4.01         5.03        29.85       122.47         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 
        0.46         2.50         5.56        13.78        29.59        34.19 
TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       28.27         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.14        16.83        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 
       15.35        11.05         0.10        56.58        45.44        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ 
       69.27        35.44        39.75        40.01        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       12.76        28.87        20.71        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        7.59         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77X TCGA-P5-A781 
        9.01         9.60         7.56        12.23         3.45         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.70        11.08        12.99        88.83        94.03        32.65 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        62.17        87.12        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        28.08        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA 
       33.93        61.41        26.99        31.36        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85D TCGA-06-0209 TCGA-02-0003 
       39.88        43.40        45.80        37.71         7.63         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
       18.35        23.18        10.59        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        20.12        53.10        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       12.16        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.31         6.87        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 
       12.59        19.86         8.35         9.57        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       27.02        65.00        11.67        17.65        23.18        99.98 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 
        9.90         7.73        10.62         7.33         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        9.27        16.21         3.35        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        4.18        88.14        20.25        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
        0.53        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        9.01         0.26         4.70         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       20.78        26.76        23.93         6.84         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
       11.84        15.32        13.61        33.90         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
        5.98         4.37        31.50       120.56         7.36        22.68 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       31.10        37.58        22.29         3.39        12.23        14.93 
TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       15.35         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.68        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       18.41         7.56        14.73        12.99        34.92        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        3.65        20.38        28.41        15.06        53.85         7.63 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 
       23.51        38.76         8.94        20.58       127.59         7.59 
TCGA-12-1091 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       33.21        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 
       19.30         0.79        13.78        50.53        19.10         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 
       26.07        16.37        11.77        21.90         0.66        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        9.07         5.95         4.64        31.33        14.86         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        1.58         7.92         2.33         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 
       11.01        13.64         5.16        22.68         5.42         7.36 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                        117.40                         211.17 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                         15.95                          16.01 
[1] "0.1 - 117.4 (15.9)" "0.0 - 211.2 (16.0)"
[1] "hr=" "1.3"
D40V2, continuous
D40V3, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED    56  39
  DEL PEAK 10(3Q13.31) WILD-TYPE 517 473
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED     56   39
  DEL PEAK 10(3Q13.31) WILD-TYPE  517  473
                        clus
vv                       DEL PEAK 10(3Q13.31) MUTATED
  BRAIN                                            56
  CENTRAL NERVOUS SYSTEM                           39
                        clus
vv                       DEL PEAK 10(3Q13.31) WILD-TYPE
  BRAIN                                             517
  CENTRAL NERVOUS SYSTEM                            473
[1] 2 2
[1] FALSE
D40V4, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED    40  55
  DEL PEAK 10(3Q13.31) WILD-TYPE 413 577
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED     40   55
  DEL PEAK 10(3Q13.31) WILD-TYPE  413  577
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  FEMALE                           40                            413
  MALE                             55                            577
[1] 2 2
[1] FALSE
D40V5, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED    15  73
  DEL PEAK 10(3Q13.31) WILD-TYPE 243 697
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED     15   73
  DEL PEAK 10(3Q13.31) WILD-TYPE  243  697
     clus
vv    DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  NO                            15                            243
  YES                           73                            697
[1] 2 2
[1] FALSE
D40V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 10(3Q13.31) MUTATED            18                             3
  DEL PEAK 10(3Q13.31) WILD-TYPE         176                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 10(3Q13.31) MUTATED                  9                12
  DEL PEAK 10(3Q13.31) WILD-TYPE              120               177
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 10(3Q13.31) MUTATED                     2
  DEL PEAK 10(3Q13.31) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 10(3Q13.31) MUTATED                                51
  DEL PEAK 10(3Q13.31) WILD-TYPE                             474
D40V7, multiclass
                                 clus
vv                                DEL PEAK 10(3Q13.31) MUTATED
  ASTROCYTOMA                                               18
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           9
  OLIGODENDROGLIOMA                                         12
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           51
                                 clus
vv                                DEL PEAK 10(3Q13.31) WILD-TYPE
  ASTROCYTOMA                                                176
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           120
  OLIGODENDROGLIOMA                                          177
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            474
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 10(3Q13.31) MUTATED                                  0     3
  DEL PEAK 10(3Q13.31) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 10(3Q13.31) MUTATED                           8    84
  DEL PEAK 10(3Q13.31) WILD-TYPE                        63   875
D40V8, multiclass
                                  clus
vv                                 DEL PEAK 10(3Q13.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                   8
  WHITE                                                      84
                                  clus
vv                                 DEL PEAK 10(3Q13.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    63
  WHITE                                                       875
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V9, binary
                                cls
clus                               0   1
  DEL PEAK 10(3Q13.31) MUTATED     4  81
  DEL PEAK 10(3Q13.31) WILD-TYPE  40 840
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(3Q13.31) MUTATED      4   81
  DEL PEAK 10(3Q13.31) WILD-TYPE   40  840
                        clus
vv                       DEL PEAK 10(3Q13.31) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                           81
                        clus
vv                       DEL PEAK 10(3Q13.31) WILD-TYPE
  HISPANIC OR LATINO                                 40
  NOT HISPANIC OR LATINO                            840
[1] 2 2
[1] FALSE

Clustering(41) Variable = DEL PEAK 11(3Q29) MUTATION ANALYSIS
D41V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 11(3Q29) MUTATED    35  72
  DEL PEAK 11(3Q29) WILD-TYPE 445 526
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                        107                         971 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                         72                         526 
$`DEL PEAK 11(3Q29) MUTATED`
TCGA-19-A6J4 TCGA-DU-7300 TCGA-HT-A619 TCGA-06-1806 TCGA-06-5415 TCGA-06-5859 
        3.98        62.01        21.40        15.32         8.55         4.57 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-14-0812 TCGA-14-1821 TCGA-14-1823 
       34.92        14.53        14.93         3.25        17.79        17.85 
TCGA-14-4157 TCGA-19-1390 TCGA-19-5956 TCGA-26-1439 TCGA-27-1830 TCGA-27-2521 
        3.42        25.38        22.49        13.87         5.06        16.77 
TCGA-27-2523 TCGA-27-2528 TCGA-32-2615 TCGA-41-2575 TCGA-74-6581 TCGA-74-6584 
       16.08        15.78        15.95         9.53         8.22         7.50 
TCGA-76-4929 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-5281 TCGA-DH-A7UU TCGA-DU-6395 
        3.65        46.95        50.86        78.28        13.71        49.02 
TCGA-DU-7007 TCGA-DU-7014 TCGA-DU-7298 TCGA-DU-8161 TCGA-DU-8167 TCGA-DU-A5TU 
       62.96       117.40        18.94        23.74        15.48        26.17 
TCGA-DU-A76R TCGA-E1-5302 TCGA-E1-A7YI TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ 
       21.30        50.14         3.65        16.18        21.30        51.88 
TCGA-E1-A7YV TCGA-E1-A7Z2 TCGA-FG-5963 TCGA-FG-6691 TCGA-HT-7470 TCGA-HT-7472 
       32.45        13.08        25.48        41.33        40.11         0.03 
TCGA-HT-7477 TCGA-HT-7604 TCGA-HT-7688 TCGA-HT-8111 TCGA-HT-8564 TCGA-IK-7675 
       24.26       122.47        31.69         0.23        15.72        19.00 
TCGA-P5-A5F6 TCGA-P5-A733 TCGA-P5-A77W TCGA-P5-A780 TCGA-QH-A65S TCGA-S9-A7IZ 
        1.28        13.61        19.20         2.37         2.53        19.99 
TCGA-S9-A7J0 TCGA-S9-A89Z TCGA-TM-A84B TCGA-TM-A84J TCGA-TQ-A7RK TCGA-TQ-A7RV 
       20.02        20.48        24.92        24.16        44.09        61.41 
TCGA-VM-A8C8 TCGA-WY-A859 TCGA-WY-A85C TCGA-02-0010 TCGA-02-0026 TCGA-02-0055 
       45.93        39.88        46.88        35.41        24.59         2.50 
TCGA-02-0084 TCGA-02-0113 TCGA-02-0330 TCGA-02-0332 TCGA-06-0128 TCGA-06-0145 
       12.62        92.65        15.91        25.71        22.72         2.33 
TCGA-06-0152 TCGA-06-0158 TCGA-06-0175 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
       12.33        10.82         4.04        15.02        24.16         0.72 
TCGA-06-0221 TCGA-06-0409 TCGA-06-1801 TCGA-06-2563 TCGA-06-2565 TCGA-06-6390 
       19.82        72.36        11.84        30.64        16.64         5.39 
TCGA-06-6693 TCGA-08-0246 TCGA-08-0351 TCGA-08-0386 TCGA-08-0392 TCGA-08-0516 
      120.56         4.18        65.33        18.02         0.72        19.59 
TCGA-08-0531 TCGA-12-0662 TCGA-12-0776 TCGA-12-0826 TCGA-12-0829 TCGA-12-1098 
        7.56        38.17         9.73        27.78        20.58         3.98 
TCGA-14-0871 TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 TCGA-28-5220 
       28.93        53.19        13.28        12.95        12.76 

$`DEL PEAK 11(3Q29) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
       45.60        42.77        59.38        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        6.15         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96        26.79         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 
       14.60        17.72        15.35        21.73        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       10.95        12.69         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0862 TCGA-14-0865 
        0.95         6.21        23.05        13.78         2.89        16.50 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       26.33        15.95         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 
       40.96         6.67        12.43         0.99         1.97         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-16-0848 
        5.88         7.17        17.49         7.96         3.78        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 
       13.97         6.41         8.61        14.27         3.39         3.65 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
       12.10         1.78        14.07        16.80        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       28.54        10.03         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        8.88        18.97        19.33        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-28-1746 TCGA-28-1747 
       18.08         7.59         2.86        14.40         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 
        2.83         0.13         0.66         6.74         4.77        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.02         8.84        22.78        25.18        21.14         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        8.94         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       12.46         4.08         1.45        25.58         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 
        4.34        14.33         4.80         4.54         3.09         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        2.53        36.85        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       18.64        36.20         5.92         6.28        20.55       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01        53.62         6.38        17.69        26.76        37.38 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 
       47.93        72.92        91.13        44.52        36.56        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 
       11.24        17.88        30.74        16.18        19.96        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       46.06        24.59        30.21        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       54.25        23.21        17.46        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        7.96         2.40        11.47       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
       10.36         7.96        94.32        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76         5.10        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        16.96        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       31.69        24.43        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T6 
       95.11        20.98        22.29        11.41        26.76        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
       38.89         0.56        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU 
       93.21        19.46        12.43        75.02        15.32         0.76 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
       36.82       146.14        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.23         0.20        47.77        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       14.93        42.54        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       22.26        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7473 
       27.52         0.10         6.67        11.54         0.13        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75        17.42         6.54         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
       23.18         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 
        0.76        44.68         6.05        42.74         0.10        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       29.59        34.19        28.27         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C 
       16.93         1.81        16.14        16.83        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       45.44        41.49        68.32        69.27        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       20.71        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         9.44         5.88         7.96         7.59 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R 
        9.60         7.56        12.23         3.45         4.41        15.16 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50        16.70        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        18.71        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       65.39        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       33.93        26.99        31.36        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A 
       23.21         8.05        51.06        13.32        43.96        43.40 
TCGA-WY-A85B TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       45.80        37.71        20.81         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       18.35        23.18        10.59        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       87.06        77.65        20.12        53.10        42.74        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.31         6.87        14.73         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        6.54        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       26.43        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.25        89.72        22.72        51.32         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
       20.38        47.61         6.94         3.98        33.67        12.95 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
       10.29         2.20        11.74        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        8.61        19.46        46.59        13.94        10.45         3.19 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         3.42        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 
       19.66         3.29        13.12         4.47         3.22        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.40         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       11.84         0.53        13.64        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26         4.70         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
       16.57        20.78        26.76        23.93         6.84         4.04 
TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
       26.79        15.32        13.61        33.90         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 
        4.93        17.65        12.56         5.95         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
        0.43        31.50         7.79         7.36        22.68        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       29.23         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       37.58        22.29         3.39        12.23        14.93        15.35 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 
       13.97        12.56         4.27        42.15        11.08        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
       19.33        10.75         4.80         7.27        15.98        18.41 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        0.10        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.41        15.06        53.85        43.23         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
       38.76         8.94       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       15.98        12.23        15.85         9.11        14.53         4.14 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 
        2.24        11.24         1.35         5.39         2.04        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0849 
        0.79        13.78        50.53        19.10         3.91        26.07 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
       16.37        11.77        21.90         0.66        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 
        5.95         4.64        31.33        14.86         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
       13.64         5.16        22.68         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                       0.03                        0.07 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                     122.47                      211.17 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                      18.94                       15.65 
[1] "0.0 - 122.5 (18.9)" "0.1 - 211.2 (15.7)"
[1] "hr=" "1.1"
D41V2, continuous
D41V3, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED    61  46
  DEL PEAK 11(3Q29) WILD-TYPE 512 466
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED     61   46
  DEL PEAK 11(3Q29) WILD-TYPE  512  466
                        clus
vv                       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  BRAIN                                         61                         512
  CENTRAL NERVOUS SYSTEM                        46                         466
[1] 2 2
[1] FALSE
D41V4, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED    42  65
  DEL PEAK 11(3Q29) WILD-TYPE 411 567
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED     42   65
  DEL PEAK 11(3Q29) WILD-TYPE  411  567
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  FEMALE                        42                         411
  MALE                          65                         567
[1] 2 2
[1] FALSE
D41V5, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED    21  81
  DEL PEAK 11(3Q29) WILD-TYPE 237 689
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED     21   81
  DEL PEAK 11(3Q29) WILD-TYPE  237  689
     clus
vv    DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  NO                         21                         237
  YES                        81                         689
[1] 2 2
[1] FALSE
D41V6, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 11(3Q29) MUTATED            23                             2
  DEL PEAK 11(3Q29) WILD-TYPE         171                            28
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 11(3Q29) MUTATED                  9                14
  DEL PEAK 11(3Q29) WILD-TYPE              120               175
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK 11(3Q29) MUTATED                     2
  DEL PEAK 11(3Q29) WILD-TYPE                  16
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 11(3Q29) MUTATED                                57
  DEL PEAK 11(3Q29) WILD-TYPE                             468
D41V7, multiclass
                                 clus
vv                                DEL PEAK 11(3Q29) MUTATED
  ASTROCYTOMA                                            23
  GLIOBLASTOMA MULTIFORME (GBM)                           2
  OLIGOASTROCYTOMA                                        9
  OLIGODENDROGLIOMA                                      14
  TREATED PRIMARY GBM                                     2
  UNTREATED PRIMARY (DE NOVO) GBM                        57
                                 clus
vv                                DEL PEAK 11(3Q29) WILD-TYPE
  ASTROCYTOMA                                             171
  GLIOBLASTOMA MULTIFORME (GBM)                            28
  OLIGOASTROCYTOMA                                        120
  OLIGODENDROGLIOMA                                       175
  TREATED PRIMARY GBM                                      16
  UNTREATED PRIMARY (DE NOVO) GBM                         468
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 11(3Q29) MUTATED                                  0     2
  DEL PEAK 11(3Q29) WILD-TYPE                                1    19
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 11(3Q29) MUTATED                           8    95
  DEL PEAK 11(3Q29) WILD-TYPE                        63   864
D41V8, multiclass
                                  clus
vv                                 DEL PEAK 11(3Q29) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    2
  BLACK OR AFRICAN AMERICAN                                8
  WHITE                                                   95
                                  clus
vv                                 DEL PEAK 11(3Q29) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     19
  BLACK OR AFRICAN AMERICAN                                 63
  WHITE                                                    864
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V9, binary
                             cls
clus                            0   1
  DEL PEAK 11(3Q29) MUTATED     5  89
  DEL PEAK 11(3Q29) WILD-TYPE  39 832
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(3Q29) MUTATED      5   89
  DEL PEAK 11(3Q29) WILD-TYPE   39  832
                        clus
vv                       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  HISPANIC OR LATINO                             5                          39
  NOT HISPANIC OR LATINO                        89                         832
[1] 2 2
[1] FALSE

Clustering(42) Variable = DEL PEAK 12(4Q34.3) MUTATION ANALYSIS
D42V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 12(4Q34.3) MUTATED   125 104
  DEL PEAK 12(4Q34.3) WILD-TYPE 355 494
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          229                           849 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          104                           494 
$`DEL PEAK 12(4Q34.3) MUTATED`
TCGA-DH-A66B TCGA-FG-A713 TCGA-HT-A619 TCGA-IK-8125 TCGA-06-5416 TCGA-06-5856 
       42.05        20.45        21.40        42.77         6.71         3.75 
TCGA-06-5859 TCGA-06-A5U0 TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 TCGA-12-3653 
        4.57        26.79        15.65        59.77        44.02        14.53 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0862 TCGA-14-1453 TCGA-14-1454 TCGA-14-1458 
       15.12        11.97         2.89         1.15        30.18         6.67 
TCGA-14-1821 TCGA-14-1823 TCGA-16-0848 TCGA-16-1045 TCGA-19-1390 TCGA-19-2629 
       17.79        17.85        17.59        29.03        25.38        24.23 
TCGA-19-4065 TCGA-19-A6J5 TCGA-26-A7UX TCGA-27-1838 TCGA-27-2518 TCGA-28-1749 
        7.04        28.54        19.33        11.51        24.76         9.21 
TCGA-28-1756 TCGA-32-1973 TCGA-32-2491 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 
        2.83        21.07        12.23         8.84        22.78        21.14 
TCGA-41-5651 TCGA-4W-AA9R TCGA-76-4934 TCGA-76-6285 TCGA-76-6286 TCGA-OX-A56R 
       15.12         4.08         2.53         8.35        20.98         5.92 
TCGA-CS-4943 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 
       36.36        46.95        48.30        75.25        47.93        50.86 
TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XE TCGA-DB-A4XH TCGA-DB-A64W 
       44.52        78.28        18.84        37.45        31.63        14.40 
TCGA-DB-A75O TCGA-DH-A669 TCGA-DH-A66G TCGA-DH-A7UV TCGA-DU-5851 TCGA-DU-5853 
       30.74        30.21        17.19        18.61        17.46        13.38 
TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6405 TCGA-DU-6410 
       18.94        15.16        65.75         1.22        19.89         7.96 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7299 
       62.96       156.23        14.99        30.67        94.32        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7309 TCGA-DU-8165 TCGA-DU-8168 TCGA-DU-A5TR 
       25.91        60.30         2.76        19.13        14.17        29.85 
TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S3 TCGA-DU-A6S8 TCGA-DU-A76R 
       31.69        26.17        24.99        21.57        22.29        21.30 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
      139.04        84.33        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YK TCGA-E1-A7YS 
       57.93       134.27       130.78        14.30        12.43        15.32 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-A4MY TCGA-FG-A60J 
       17.88        22.55        14.24        14.96        23.70        14.76 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-HT-7467 TCGA-HT-7468 
       21.53        15.02        16.44        22.26         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7480 
       11.54         0.13        16.54         6.54        24.26        75.19 
TCGA-HT-7677 TCGA-HT-7688 TCGA-HT-7692 TCGA-HT-7856 TCGA-HT-8105 TCGA-HT-A5R7 
       16.24        31.69         2.96        39.09         6.25        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RC TCGA-HT-A74J TCGA-HT-A74K TCGA-HW-7487 TCGA-HW-7489 
        0.07         5.33        10.52        15.35        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-8321 TCGA-IK-7675 TCGA-P5-A5EV TCGA-P5-A5EZ 
       68.32        69.27        42.54        19.00         0.23         2.30 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A780 TCGA-QH-A6X4 
       13.61         9.60        12.23        19.20         2.37        14.53 
TCGA-QH-A6XA TCGA-RY-A83Z TCGA-S9-A6TW TCGA-S9-A6WD TCGA-S9-A6WL TCGA-S9-A6WP 
       16.50         9.90        41.10        75.25        31.10        18.64 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QY TCGA-S9-A89Z 
        7.92        23.51        19.99        20.02        28.37        20.48 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84R TCGA-TM-A84T 
       48.33        49.32        34.78        65.39        18.61        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RR TCGA-TQ-A7RU 
       21.37        44.09        36.69        31.20        25.87        33.93 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85E 
       26.99        45.93        13.32        39.88        43.40        20.81 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0054 TCGA-02-0064 TCGA-02-0079 TCGA-02-0432 
       53.10        24.59         6.54        19.73        27.25        47.11 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0129 TCGA-06-0138 TCGA-06-0152 
       16.80        15.32        15.45        33.67        24.23        12.33 
TCGA-06-0166 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0192 TCGA-06-0216 
        5.85         3.22         4.04         4.18        38.96        24.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0744 TCGA-06-1087 TCGA-06-1800 
       35.11        12.62         5.75        46.88         4.04        26.79 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2569 TCGA-06-6389 TCGA-06-6390 
       13.61        33.90         1.08         0.43         7.79         5.39 
TCGA-08-0246 TCGA-08-0350 TCGA-08-0351 TCGA-08-0354 TCGA-08-0356 TCGA-08-0358 
        4.18        29.23        65.33        17.95        31.10        22.29 
TCGA-08-0386 TCGA-12-0619 TCGA-12-0691 TCGA-12-0769 TCGA-12-0827 TCGA-12-1098 
       18.02        34.92        12.13        15.06        38.76         3.98 
TCGA-14-0787 TCGA-14-0813 TCGA-14-0867 TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 
        2.24         1.35         2.04        13.78        53.19        13.28 
TCGA-19-1387 TCGA-19-1388 TCGA-26-1442 TCGA-28-2514 TCGA-28-5214 TCGA-28-5220 
        5.95        12.95        31.33         5.26        23.44        12.76 
TCGA-76-6283 
        5.42 

$`DEL PEAK 12(4Q34.3) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A87N 
       62.01        17.16        23.90        20.09        17.82        18.64 
TCGA-HW-7490 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
       45.60        59.38        15.32        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        4.54         8.81         8.98         8.55         2.73         6.15 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.23         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
        4.96         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 
       15.35        21.73        25.68        14.73         6.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
        2.04         0.95         6.21        23.05        13.78         3.25 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78        23.11         7.10         0.92        40.96 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
       12.43         0.99         1.97         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-1047 TCGA-16-1055 
       17.49         7.96         3.78         3.42         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 
       14.01         9.14        21.24        13.97         6.41         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       14.27         3.39         3.65         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        4.08         7.00         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
       14.96        17.79        10.03        13.87         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-27-1830 TCGA-27-1831 
        9.37         9.40         8.88        18.97         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        16.77        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.22         1.55         0.13         0.66         6.74         4.77 
TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.39         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        14.86        16.93        20.78        15.02 
TCGA-32-2615 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       15.95        25.18         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44        11.84         0.20        12.46         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.80         4.54         3.09         3.65         9.17        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 
       16.70         3.29         2.70        17.06         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC 
       23.90        34.45        18.64        36.20         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
      117.50         7.69        43.89        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01        53.62         6.38        17.69        26.76        37.38 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5276 TCGA-DB-5278 
       49.94        49.12       122.73        81.96        72.92        91.13 
TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG 
       36.56        46.42        30.21        39.78        33.57        72.95 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       27.81        29.23        18.51        12.10        11.24        17.88 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D 
       16.18        19.96        63.88        46.06        24.59        27.81 
TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-5847 
       17.19        54.25        23.21        17.46        13.71        18.02 
TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 
       14.56         6.74         8.45         6.81       182.33        17.49 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04        11.64       133.74        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
      114.08         2.40        11.47       154.36       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84       117.40        90.77        26.30        10.36         7.96 
TCGA-DU-7298 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       18.94        23.31        41.98         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TT 
       20.68        21.40        16.96        15.48        33.27        24.43 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L 
       33.96        25.55        95.11        20.98        11.41        26.76 
TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       17.98        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
        0.56        78.21        95.57        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YU 
       19.46        16.18        21.30        75.02        51.88         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       32.35        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       18.44        15.35        20.61        20.09        28.34        13.68 
TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       16.01        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       18.71        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7478 
       27.52        40.11         0.03         3.75        17.42         6.38 
TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       40.34        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
        0.16         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
       14.96         0.10         0.10        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       39.48        19.23         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
       27.35         0.10         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74L TCGA-HT-A74O 
       16.83        17.52        17.65         2.43        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ 
       56.58        35.44        39.75        40.01        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW 
       12.76        28.87        20.71        14.40        14.40         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        7.99         2.37         9.44         5.88         7.96         7.59 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A736 TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
        9.01         7.56         3.45         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X5 
       13.61        12.23        13.41         9.17        10.29        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       16.73         1.91        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       94.03        32.65        30.87         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TX 
       19.59        30.67        62.17        87.12        18.77        40.93 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE 
       35.15        98.24        95.93         5.85       123.65       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       85.55        38.56        84.99        19.86        26.47        18.61 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       14.07        36.13        26.93         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       15.06        18.54        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B 
       30.05        98.63        31.59        18.71        54.77        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84S TCGA-TQ-A7RG 
       40.83        24.79        33.24        25.38        14.93        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RN TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       15.98         2.04        40.41        33.73        30.05        26.14 
TCGA-TQ-A7RV TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       61.41        31.36        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
        8.05        51.06        43.96        45.80        46.88        37.71 
TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
        7.63        11.77         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       20.12        42.74        12.16        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.22        15.09        12.59         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       10.19        20.84        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.18        92.65        99.98        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.73        10.62         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
       25.12        10.59        12.39        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2486 TCGA-06-0119 
        9.27        16.21         3.35        12.92        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       12.95        25.35        14.30        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       10.09         8.61        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0176 
       10.65        19.66         3.29        13.12         4.47        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       44.58        15.42        10.42         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02         0.72        19.82        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       48.69        10.82         9.01         0.26        72.36         4.70 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
        9.57         3.16         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        26.40         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1801 TCGA-06-1802 TCGA-06-2558 
       26.76        23.93         6.84        11.84        15.32        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
        5.98         4.37        31.50       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       37.84       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0357 TCGA-08-0359 
        9.80         1.28         8.42        24.56        37.58         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        4.27        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.73        12.99        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       38.17        25.97        26.66         3.65        20.38        28.41 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.76        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       15.98        12.23        15.85         9.11        14.53         4.14 
TCGA-14-0789 TCGA-14-0817 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-1444 
       11.24         5.39        28.93        19.30         0.79        50.53 
TCGA-15-1446 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 
       19.10         3.91        26.07        16.37        11.77        21.90 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-26-5133 TCGA-26-5134 
        0.66        10.75         9.07         4.64        14.86         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        1.58         7.92         2.33         7.30        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
       17.88        14.53        11.77        31.27        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6660 
        5.16        22.68         5.42         7.36        11.38         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                       156.23                        211.17 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                        20.02                         15.02 
[1] "0.1 - 156.2 (20.0)" "0.0 - 211.2 (15.0)"
[1] "hr=" "1.5"
D42V2, continuous
D42V3, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED    93 137
  DEL PEAK 12(4Q34.3) WILD-TYPE 480 375
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     93  137
  DEL PEAK 12(4Q34.3) WILD-TYPE  480  375
                        clus
vv                       DEL PEAK 12(4Q34.3) MUTATED
  BRAIN                                           93
  CENTRAL NERVOUS SYSTEM                         137
                        clus
vv                       DEL PEAK 12(4Q34.3) WILD-TYPE
  BRAIN                                            480
  CENTRAL NERVOUS SYSTEM                           375
[1] 2 2
[1] FALSE
D42V4, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED    85 145
  DEL PEAK 12(4Q34.3) WILD-TYPE 368 487
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     85  145
  DEL PEAK 12(4Q34.3) WILD-TYPE  368  487
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  FEMALE                          85                           368
  MALE                           145                           487
[1] 2 2
[1] FALSE
D42V5, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED    61 155
  DEL PEAK 12(4Q34.3) WILD-TYPE 197 615
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     61  155
  DEL PEAK 12(4Q34.3) WILD-TYPE  197  615
     clus
vv    DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  NO                           61                           197
  YES                         155                           615
[1] 2 2
[1] FALSE
D42V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 12(4Q34.3) MUTATED            48                             6
  DEL PEAK 12(4Q34.3) WILD-TYPE         146                            24
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 12(4Q34.3) MUTATED                 36                53
  DEL PEAK 12(4Q34.3) WILD-TYPE               93               136
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 12(4Q34.3) MUTATED                     2
  DEL PEAK 12(4Q34.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 12(4Q34.3) MUTATED                                85
  DEL PEAK 12(4Q34.3) WILD-TYPE                             440
D42V7, multiclass
                                 clus
vv                                DEL PEAK 12(4Q34.3) MUTATED
  ASTROCYTOMA                                              48
  GLIOBLASTOMA MULTIFORME (GBM)                             6
  OLIGOASTROCYTOMA                                         36
  OLIGODENDROGLIOMA                                        53
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          85
                                 clus
vv                                DEL PEAK 12(4Q34.3) WILD-TYPE
  ASTROCYTOMA                                               146
  GLIOBLASTOMA MULTIFORME (GBM)                              24
  OLIGOASTROCYTOMA                                           93
  OLIGODENDROGLIOMA                                         136
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           440
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 12(4Q34.3) MUTATED                                  0     7
  DEL PEAK 12(4Q34.3) WILD-TYPE                                1    14
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 12(4Q34.3) MUTATED                          15   207
  DEL PEAK 12(4Q34.3) WILD-TYPE                        56   752
D42V8, multiclass
                                  clus
vv                                 DEL PEAK 12(4Q34.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      7
  BLACK OR AFRICAN AMERICAN                                 15
  WHITE                                                    207
                                  clus
vv                                 DEL PEAK 12(4Q34.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       14
  BLACK OR AFRICAN AMERICAN                                   56
  WHITE                                                      752
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V9, binary
                               cls
clus                              0   1
  DEL PEAK 12(4Q34.3) MUTATED    12 194
  DEL PEAK 12(4Q34.3) WILD-TYPE  32 727
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     12  194
  DEL PEAK 12(4Q34.3) WILD-TYPE   32  727
                        clus
vv                       DEL PEAK 12(4Q34.3) MUTATED
  HISPANIC OR LATINO                              12
  NOT HISPANIC OR LATINO                         194
                        clus
vv                       DEL PEAK 12(4Q34.3) WILD-TYPE
  HISPANIC OR LATINO                                32
  NOT HISPANIC OR LATINO                           727
[1] 2 2
[1] FALSE

Clustering(43) Variable = DEL PEAK 13(5P15.33) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 13(5P15.33) MUTATED    47  58
  DEL PEAK 13(5P15.33) WILD-TYPE 433 540
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           105                            973 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                            58                            540 
$`DEL PEAK 13(5P15.33) MUTATED`
TCGA-DB-A4XC TCGA-E1-A7YN TCGA-12-3652 TCGA-12-3653 TCGA-14-0740 TCGA-14-0865 
       46.72        23.90        34.92        14.53        11.97        16.50 
TCGA-14-1453 TCGA-14-1456 TCGA-14-1821 TCGA-19-1787 TCGA-19-4065 TCGA-19-5954 
        1.15        40.96        17.79        12.66         7.04        12.10 
TCGA-19-A6J5 TCGA-27-1834 TCGA-27-1835 TCGA-27-2521 TCGA-28-1755 TCGA-41-5651 
       28.54        40.54        21.30        16.77         1.55        15.12 
TCGA-4W-AA9R TCGA-74-6575 TCGA-76-4925 TCGA-76-4929 TCGA-CS-4943 TCGA-DB-5275 
        4.08        20.91         4.80         3.65        36.36        47.93 
TCGA-DB-5276 TCGA-DB-5281 TCGA-DB-A4XE TCGA-DB-A4XH TCGA-DB-A64X TCGA-DH-5140 
       72.92        78.28        37.45        31.63        18.51        19.96 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DU-6399 TCGA-DU-7007 TCGA-DU-7306 TCGA-DU-8165 
       27.81        17.19        65.75        62.96        41.98        19.13 
TCGA-DU-A7T6 TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-A7YI TCGA-E1-A7YV TCGA-E1-A7Z4 
       17.98        50.14        41.13         3.65        32.45       145.05 
TCGA-FG-5962 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A6J3 
       47.77        36.82        14.93        18.38        23.70        22.26 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7873 TCGA-HT-7879 
        3.75        17.42        31.69        14.96        23.61         3.68 
TCGA-HT-7884 TCGA-HT-8106 TCGA-HT-A614 TCGA-HT-A61B TCGA-HT-A74O TCGA-P5-A5F4 
       11.28         0.10         2.70        17.52         0.10         7.59 
TCGA-P5-A72W TCGA-P5-A780 TCGA-RY-A83Z TCGA-S9-A6TV TCGA-S9-A6WM TCGA-S9-A7IX 
       10.42         2.37         9.90        18.77        19.86        26.93 
TCGA-S9-A7R7 TCGA-TM-A84I TCGA-TQ-A7RH TCGA-WY-A859 TCGA-02-0014 TCGA-02-0052 
       98.63        28.08        15.98        39.88        82.59        12.59 
TCGA-02-0069 TCGA-02-0084 TCGA-02-0115 TCGA-02-0339 TCGA-02-2483 TCGA-06-0128 
       28.70        12.62        15.65        12.39        15.32        22.72 
TCGA-06-0148 TCGA-06-0151 TCGA-06-0188 TCGA-06-0216 TCGA-06-0414 TCGA-06-0686 
       10.09        46.59        44.58        24.16        35.11        14.20 
TCGA-06-1087 TCGA-06-2569 TCGA-06-6389 TCGA-08-0245 TCGA-08-0344 TCGA-08-0351 
        4.04         0.43         7.79        37.84       115.86        65.33 
TCGA-08-0386 TCGA-08-0516 TCGA-08-0517 TCGA-12-0657 TCGA-12-0818 TCGA-12-1093 
       18.02        19.59        58.68         0.10        91.76        15.98 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-16-0846 TCGA-16-0850 TCGA-19-1387 
        5.39         2.04        28.93         3.91        16.37         5.95 
TCGA-19-1388 TCGA-26-5133 TCGA-28-5215 
       12.95        14.86        11.01 

$`DEL PEAK 13(5P15.33) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        51.55        46.88        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       62.01        17.16        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
       26.79         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       15.35        21.73        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       14.93         3.22         2.04        15.12         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       23.05        13.78         3.25         2.89        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        7.10        30.18         0.92         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.96         3.78         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        8.61        14.27         3.39        25.38         3.65         7.17 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
        8.02        18.90         4.73         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
       16.80        14.96        17.79        10.03        13.87         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        7.13         9.37         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 
        5.06        16.60         9.86        24.23        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.76        18.08        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        7.63         8.48         1.22         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        6.74         4.77        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9S 
        0.99         4.44        11.84         0.20        12.46         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
       25.58         3.45         4.34        14.33         8.22         7.50 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         9.17         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        5.03        23.90        34.45        18.64        36.20         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 
        6.28        20.55       117.50         7.69        43.89        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.26        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       26.76        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
      122.73        81.96        75.25        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF 
       36.56        46.42        18.84        30.21        39.78        33.57 
TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        14.40        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       17.88        30.74        16.18        63.88        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       30.21        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
      117.40        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       95.11        20.98        22.29        11.41        26.76        21.30 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       38.89         0.56        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ 
       19.46        12.43        16.18        21.30        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
       15.32         0.76        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       32.35        39.48         0.23         0.20        25.48        52.21 
TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       18.77        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       16.01        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       18.71        14.76        21.53        15.02        16.44        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 
        0.76        44.68         6.05        42.74         0.10         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 
       19.23        39.09         0.23        50.63         0.49        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 
        0.33         0.13         5.33        35.47         3.72        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        0.10         5.33        16.93         1.81        16.14        16.83 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 
       17.65         2.43        10.52        15.35        11.05        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       45.44        41.49        68.32        69.27        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        19.00        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         9.44         5.88         7.96 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        1.28         0.23        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23        13.41 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50        16.70        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       32.65        30.87         5.46        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        62.17        87.12        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO 
       85.55        38.56        84.99        31.10        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ 
       18.64        14.07        36.13         7.92        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       30.44        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI 
       18.61        14.93        23.80        21.37        19.69         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       45.93        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       51.06        13.32        43.96        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       37.71        20.81         7.63        11.77         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 
       23.18        10.59        35.41        20.71        20.61        87.06 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       77.65        20.12        53.10        42.74        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 
       18.31         6.87        14.73         3.22        15.09         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       26.43        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.65        99.98        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 
       25.71         4.37        25.12        10.59        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       47.61         6.94         3.98        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 
        2.20        11.74         2.33        20.09        17.79         8.61 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         3.42        56.91        10.65         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       73.84        27.22        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.40         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
       11.84         0.53        15.02         0.72        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
       72.36         4.70         9.57         3.16        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 
        5.75         9.80         2.10        23.57        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        6.84        26.79        11.84        15.32        13.61        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6390 
        5.95        16.64         5.98         4.37        31.50         5.39 
TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
      120.56         7.36        22.68         4.18         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 
       25.71        12.16         9.80        29.23         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        4.27        42.15        11.08        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        7.27        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 
       34.92        10.45         7.59        94.78        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       12.23        15.85         9.11        14.53         3.98         4.14 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        2.24        11.24         1.35        19.30         0.79        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-19-0955 
       50.53        19.10        53.19        13.28        26.07        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-26-1442 
       21.90         0.66        10.75         9.07         4.64        31.33 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 
        5.49         1.58         7.92         2.33         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       23.44        13.64         5.16        22.68        12.76         5.42 
TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        7.36        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                        145.05                         211.17 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                         18.02                          15.72 
[1] "0.1 - 145.1 (18.0)" "0.0 - 211.2 (15.7)"
[1] "hr=" "1.1"
D43V2, continuous
D43V3, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED    56  50
  DEL PEAK 13(5P15.33) WILD-TYPE 517 462
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED     56   50
  DEL PEAK 13(5P15.33) WILD-TYPE  517  462
                        clus
vv                       DEL PEAK 13(5P15.33) MUTATED
  BRAIN                                            56
  CENTRAL NERVOUS SYSTEM                           50
                        clus
vv                       DEL PEAK 13(5P15.33) WILD-TYPE
  BRAIN                                             517
  CENTRAL NERVOUS SYSTEM                            462
[1] 2 2
[1] FALSE
D43V4, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED    42  64
  DEL PEAK 13(5P15.33) WILD-TYPE 411 568
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED     42   64
  DEL PEAK 13(5P15.33) WILD-TYPE  411  568
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  FEMALE                           42                            411
  MALE                             64                            568
[1] 2 2
[1] FALSE
D43V5, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED    11  88
  DEL PEAK 13(5P15.33) WILD-TYPE 247 682
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED     11   88
  DEL PEAK 13(5P15.33) WILD-TYPE  247  682
     clus
vv    DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  NO                            11                            247
  YES                           88                            682
[1] 2 2
[1] FALSE
D43V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 13(5P15.33) MUTATED            23                             3
  DEL PEAK 13(5P15.33) WILD-TYPE         171                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 13(5P15.33) MUTATED                 19                 8
  DEL PEAK 13(5P15.33) WILD-TYPE              110               181
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 13(5P15.33) MUTATED                     1
  DEL PEAK 13(5P15.33) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 13(5P15.33) MUTATED                                52
  DEL PEAK 13(5P15.33) WILD-TYPE                             473
D43V7, multiclass
                                 clus
vv                                DEL PEAK 13(5P15.33) MUTATED
  ASTROCYTOMA                                               23
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                          19
  OLIGODENDROGLIOMA                                          8
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           52
                                 clus
vv                                DEL PEAK 13(5P15.33) WILD-TYPE
  ASTROCYTOMA                                                171
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           110
  OLIGODENDROGLIOMA                                          181
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            473
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 13(5P15.33) MUTATED                                  0     3
  DEL PEAK 13(5P15.33) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 13(5P15.33) MUTATED                           7    95
  DEL PEAK 13(5P15.33) WILD-TYPE                        64   864
D43V8, multiclass
                                  clus
vv                                 DEL PEAK 13(5P15.33) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                   7
  WHITE                                                      95
                                  clus
vv                                 DEL PEAK 13(5P15.33) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    64
  WHITE                                                       864
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V9, binary
                                cls
clus                               0   1
  DEL PEAK 13(5P15.33) MUTATED     4  89
  DEL PEAK 13(5P15.33) WILD-TYPE  40 832
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(5P15.33) MUTATED      4   89
  DEL PEAK 13(5P15.33) WILD-TYPE   40  832
                        clus
vv                       DEL PEAK 13(5P15.33) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                           89
                        clus
vv                       DEL PEAK 13(5P15.33) WILD-TYPE
  HISPANIC OR LATINO                                 40
  NOT HISPANIC OR LATINO                            832
[1] 2 2
[1] FALSE

Clustering(44) Variable = DEL PEAK 14(5Q34) MUTATION ANALYSIS
D44V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 14(5Q34) MUTATED    58  73
  DEL PEAK 14(5Q34) WILD-TYPE 422 525
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        131                         947 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                         73                         525 
$`DEL PEAK 14(5Q34) MUTATED`
TCGA-CS-6665 TCGA-DH-A66B TCGA-06-A5U0 TCGA-06-A7TL TCGA-12-1600 TCGA-12-3653 
       51.55        42.05        26.79        17.72        14.73        14.53 
TCGA-14-0740 TCGA-14-0865 TCGA-14-1453 TCGA-14-1821 TCGA-14-3477 TCGA-16-1045 
       11.97        16.50         1.15        17.79         3.78        29.03 
TCGA-19-0960 TCGA-19-1786 TCGA-19-2629 TCGA-19-4065 TCGA-19-A6J5 TCGA-26-5135 
        8.61         7.17        24.23         7.04        28.54         8.88 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-2521 TCGA-28-1756 TCGA-41-2572 
       40.54        21.30        30.05        16.77         2.83        13.35 
TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9R TCGA-76-4925 TCGA-76-4929 TCGA-76-4934 
        0.20        15.12         4.08         4.80         3.65         2.53 
TCGA-RR-A6KC TCGA-CS-6666 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A4XH 
       20.55        46.95        72.92        50.86        78.28        31.63 
TCGA-DB-A64X TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UU 
       18.51        11.24        19.96        27.81        17.19        13.71 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-8165 
       65.75        87.45       114.08        62.96        14.99        19.13 
TCGA-DU-A5TU TCGA-DU-A6S7 TCGA-DU-A7T6 TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5305 
       26.17        20.98        17.98        50.14        41.13        79.99 
TCGA-E1-5307 TCGA-E1-A7YE TCGA-E1-A7Z2 TCGA-FG-5963 TCGA-FG-A4MW TCGA-FG-A6J3 
       57.93        29.13        13.08        25.48        18.38        22.26 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7477 TCGA-HT-7609 TCGA-HT-7879 TCGA-HT-7884 
       11.54        40.11        24.26        45.99         3.68        11.28 
TCGA-HT-7902 TCGA-HT-8106 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A618 TCGA-IK-7675 
       31.43         0.10        20.22         2.70        16.83        19.00 
TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A72X TCGA-QH-A65S TCGA-RY-A83Z TCGA-S9-A6TS 
        2.30         5.88        13.25         2.53         9.90        62.17 
TCGA-S9-A6TV TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A7IS TCGA-S9-A7R7 TCGA-S9-A89Z 
       18.77        19.86        18.61         7.92        98.63        20.48 
TCGA-TM-A7CF TCGA-TM-A84I TCGA-TQ-A7RM TCGA-VM-A8CF TCGA-WH-A86K TCGA-WY-A859 
       65.39        28.08        36.69        20.02        13.32        39.88 
TCGA-WY-A85B TCGA-WY-A85D TCGA-02-0010 TCGA-02-0011 TCGA-02-0026 TCGA-02-0052 
       45.80        37.71        35.41        20.71        24.59        12.59 
TCGA-02-0069 TCGA-02-0084 TCGA-02-0104 TCGA-02-0333 TCGA-02-2483 TCGA-06-0128 
       28.70        12.62        65.00         4.37        15.32        22.72 
TCGA-06-0148 TCGA-06-0175 TCGA-06-0188 TCGA-06-0211 TCGA-06-0237 TCGA-06-0414 
       10.09         4.04        44.58        11.84        13.64        35.11 
TCGA-06-0644 TCGA-06-0649 TCGA-06-0686 TCGA-06-0744 TCGA-06-1087 TCGA-06-2569 
       12.62         2.10        14.20        46.88         4.04         0.43 
TCGA-06-6389 TCGA-08-0344 TCGA-08-0350 TCGA-08-0386 TCGA-08-0516 TCGA-08-0517 
        7.79       115.86        29.23        18.02        19.59        58.68 
TCGA-08-0524 TCGA-12-0818 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-15-1444 
        7.27        91.76         5.39         2.04        28.93        50.53 
TCGA-15-1447 TCGA-16-0850 TCGA-19-1387 TCGA-26-5133 TCGA-28-5215 
       53.19        16.37         5.95        14.86        11.01 

$`DEL PEAK 14(5Q34) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-7300 
        1.48         3.98        46.88        46.72        31.82        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 
       21.40        45.60        42.77        59.38        15.32        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 
        1.87         3.12         2.56        14.60        15.35        21.73 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       15.65        25.68         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 
        2.04        15.12         0.95         6.21        23.05        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 
        3.25         2.89        26.33        15.95         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.05        58.78        23.11         7.10        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        3.42        17.59         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 
       21.24        13.97         6.41        14.27         3.39        25.38 
TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        3.65        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 
        1.08         7.53         0.16         4.08         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 
       22.49        14.07        16.80        14.96        17.79        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5136 
       13.87         9.73         7.13         9.37         9.40        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1837 
       19.33         5.06        16.60         9.86        24.23        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.76        18.08        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 
        7.63         8.48         1.22         1.55         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        6.74         4.77        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85        19.23         0.85         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 
        4.44        11.84        12.46         1.45        25.58         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 
       20.91         4.34        14.33         8.22         7.50         4.54 
TCGA-76-4928 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.09         9.17        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-CS-4938 
       34.45        18.64        36.20         5.92         6.28       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01        53.62         6.38        17.69        26.76        37.38 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA 
       47.93        91.13        44.52        36.56        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L 
       30.21        39.78        37.45        33.57        72.95        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       29.23        14.40        12.10        17.88        30.74        16.18 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR 
       63.88        46.06        24.59        30.21        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       23.21        17.46        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       75.16        46.06         1.22         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       19.89        16.83        94.52         7.96         2.40        11.47 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
      156.23       154.36       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       18.94        44.02        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       24.43        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA 
       22.29        11.41        26.76        21.30       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
       51.52        37.38         7.50        44.42        38.89         0.56 
TCGA-E1-5303 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       67.46       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
      146.14        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
        0.20        47.77        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX 
       14.96        22.52        32.61        38.27        10.72        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       23.70        14.76        21.53        15.02        16.44        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
        6.67         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7611 
        4.57        17.29         3.16        22.06        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
       37.15         0.33         0.13         5.33        35.47         3.72 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61B TCGA-HT-A61C 
        5.33        16.93         1.81        16.14        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       45.44        41.49        68.32        69.27        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       20.71        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        2.37         9.44         7.96         7.59         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       10.42        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
       15.16        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23        13.41         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        5.46        28.08         2.07        19.59        30.67        87.12 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX 
       31.10        26.47        18.64        14.07        36.13        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 
       99.06        30.05        31.59        18.71        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       49.32        34.78        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       30.44        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
        2.04        40.41        44.09        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       45.93        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       43.96        43.40        46.88        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
        4.73        18.35        23.18        10.59        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       87.06        77.65        20.12        53.10        42.74        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 
       18.31         6.87        14.73         3.22        15.09         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       26.43        25.05         5.49        10.19        20.84        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        27.02        11.67        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
       25.71        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       47.61         6.94         3.98        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 
        2.20        11.74         2.33        20.09        17.79         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
       10.82         9.44        11.80         3.42        56.91        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       91.00         4.18        88.14        20.25         3.65        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       73.84        27.22        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.40         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.53        15.02        24.16         0.72        19.82        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        4.70         9.57         3.16         5.75         5.75         9.80 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       23.57        26.40         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       26.76        23.93         6.84        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2570 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 
       31.50         5.39       120.56         7.36        22.68        37.84 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
        4.18         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       37.58        22.29         3.39        12.23        14.93        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       13.97         0.72        12.56         4.27        42.15        11.08 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       19.33        10.75         4.80        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.73        14.93        14.86        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82         7.59        33.21        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
        9.11        14.53         3.98         4.14         2.24        11.24 
TCGA-14-0813 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
        1.35        19.30         0.79        13.78        19.10        13.28 
TCGA-16-0846 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 
        3.91        26.07        11.77        21.90         0.66        10.75 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5134 TCGA-26-5139 
        9.07        12.95         4.64        31.33         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       17.88        14.53        11.77        31.27        23.44        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
        5.16        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                       0.10                        0.03 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                     115.86                      211.17 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                      18.77                       15.65 
[1] "0.1 - 115.9 (18.8)" "0.0 - 211.2 (15.7)"
[1] "hr=" "1.1"
D44V2, continuous
D44V3, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED    69  63
  DEL PEAK 14(5Q34) WILD-TYPE 504 449
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED     69   63
  DEL PEAK 14(5Q34) WILD-TYPE  504  449
                        clus
vv                       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  BRAIN                                         69                         504
  CENTRAL NERVOUS SYSTEM                        63                         449
[1] 2 2
[1] FALSE
D44V4, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED    63  69
  DEL PEAK 14(5Q34) WILD-TYPE 390 563
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED     63   69
  DEL PEAK 14(5Q34) WILD-TYPE  390  563
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  FEMALE                        63                         390
  MALE                          69                         563
[1] 2 2
[1] FALSE
D44V5, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED    17 106
  DEL PEAK 14(5Q34) WILD-TYPE 241 664
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED     17  106
  DEL PEAK 14(5Q34) WILD-TYPE  241  664
     clus
vv    DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  NO                         17                         241
  YES                       106                         664
[1] 2 2
[1] FALSE
D44V6, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 14(5Q34) MUTATED            40                             6
  DEL PEAK 14(5Q34) WILD-TYPE         154                            24
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 14(5Q34) MUTATED                 13                10
  DEL PEAK 14(5Q34) WILD-TYPE              116               179
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK 14(5Q34) MUTATED                     1
  DEL PEAK 14(5Q34) WILD-TYPE                  17
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 14(5Q34) MUTATED                                62
  DEL PEAK 14(5Q34) WILD-TYPE                             463
D44V7, multiclass
                                 clus
vv                                DEL PEAK 14(5Q34) MUTATED
  ASTROCYTOMA                                            40
  GLIOBLASTOMA MULTIFORME (GBM)                           6
  OLIGOASTROCYTOMA                                       13
  OLIGODENDROGLIOMA                                      10
  TREATED PRIMARY GBM                                     1
  UNTREATED PRIMARY (DE NOVO) GBM                        62
                                 clus
vv                                DEL PEAK 14(5Q34) WILD-TYPE
  ASTROCYTOMA                                             154
  GLIOBLASTOMA MULTIFORME (GBM)                            24
  OLIGOASTROCYTOMA                                        116
  OLIGODENDROGLIOMA                                       179
  TREATED PRIMARY GBM                                      17
  UNTREATED PRIMARY (DE NOVO) GBM                         463
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 14(5Q34) MUTATED                                  0     3
  DEL PEAK 14(5Q34) WILD-TYPE                                1    18
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 14(5Q34) MUTATED                          11   118
  DEL PEAK 14(5Q34) WILD-TYPE                        60   841
D44V8, multiclass
                                  clus
vv                                 DEL PEAK 14(5Q34) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         0
  ASIAN                                                    3
  BLACK OR AFRICAN AMERICAN                               11
  WHITE                                                  118
                                  clus
vv                                 DEL PEAK 14(5Q34) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                     18
  BLACK OR AFRICAN AMERICAN                                 60
  WHITE                                                    841
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V9, binary
                             cls
clus                            0   1
  DEL PEAK 14(5Q34) MUTATED     5 113
  DEL PEAK 14(5Q34) WILD-TYPE  39 808
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(5Q34) MUTATED      5  113
  DEL PEAK 14(5Q34) WILD-TYPE   39  808
                        clus
vv                       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  HISPANIC OR LATINO                             5                          39
  NOT HISPANIC OR LATINO                       113                         808
[1] 2 2
[1] FALSE

Clustering(45) Variable = DEL PEAK 15(6P25.3) MUTATION ANALYSIS
D45V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 15(6P25.3) MUTATED    40  97
  DEL PEAK 15(6P25.3) WILD-TYPE 440 501
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          137                           941 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           97                           501 
$`DEL PEAK 15(6P25.3) MUTATED`
TCGA-19-A6J4 TCGA-HW-7490 TCGA-06-1806 TCGA-06-5410 TCGA-06-5416 TCGA-06-5856 
        3.98        45.60        15.32         3.55         6.71         3.75 
TCGA-12-1602 TCGA-12-3646 TCGA-14-0736 TCGA-14-0865 TCGA-14-1396 TCGA-14-1453 
        6.77        44.02        15.12        16.50         1.12         1.15 
TCGA-14-1823 TCGA-14-3477 TCGA-16-1460 TCGA-19-1392 TCGA-19-4065 TCGA-19-5947 
       17.85         3.78         6.41         3.65         7.04         6.64 
TCGA-19-5960 TCGA-26-1439 TCGA-27-1832 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 
       14.96        13.87         9.86        16.77         7.59         8.35 
TCGA-28-1757 TCGA-28-2506 TCGA-28-2509 TCGA-32-1976 TCGA-32-1980 TCGA-32-4210 
        0.13         6.74         4.77         0.49         1.18         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-41-4097 TCGA-41-5651 TCGA-74-6573 TCGA-74-6575 
       12.59        10.85         0.20        15.12         3.45        20.91 
TCGA-76-4925 TCGA-76-4928 TCGA-76-6285 TCGA-OX-A56R TCGA-CS-5397 TCGA-CS-6666 
        4.80         3.09         8.35         5.92         6.38        46.95 
TCGA-DB-5277 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64O TCGA-DH-A669 TCGA-DH-A66G 
       50.86        33.57        31.63        25.48        30.21        17.19 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6407 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-A7T6 
        1.22         7.04        94.52         5.10        23.74        17.98 
TCGA-E1-A7YI TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7Z4 TCGA-FG-5963 TCGA-FG-5965 
        3.65        51.88        15.32       145.05        25.48        36.82 
TCGA-FG-6690 TCGA-FG-A70Y TCGA-HT-7692 TCGA-HT-7855 TCGA-HT-7873 TCGA-HT-7884 
       42.54        28.54         2.96        19.23        23.61        11.28 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A614 TCGA-HT-A617 TCGA-HT-A74L TCGA-HW-7493 
       15.72         0.23         2.70        16.14        11.05        69.27 
TCGA-HW-8322 TCGA-IK-7675 TCGA-P5-A5EZ TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-QH-A6CS 
       24.92        19.00         2.30         7.59         1.28        19.33 
TCGA-QH-A6CX TCGA-S9-A6TV TCGA-S9-A6TZ TCGA-S9-A7IS TCGA-TM-A7CF TCGA-TQ-A7RR 
       12.23        18.77        36.82         7.92        65.39        25.87 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CD TCGA-06-0209 TCGA-02-0023 
       61.41        26.99        45.93         7.89         7.63        20.12 
TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 TCGA-02-0051 TCGA-02-0074 TCGA-02-0080 
       24.59        10.52         3.22        15.09        10.19        89.72 
TCGA-02-0086 TCGA-02-0113 TCGA-02-0115 TCGA-02-0266 TCGA-02-0281 TCGA-02-0289 
        8.81        92.65        15.65        17.72         3.98        14.20 
TCGA-02-0325 TCGA-06-0129 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 TCGA-06-0162 
       10.62        33.67        12.95        24.23        10.29         3.42 
TCGA-06-0166 TCGA-06-0184 TCGA-06-0216 TCGA-06-0238 TCGA-06-0402 TCGA-06-0644 
        5.85        69.90        24.16        13.32         0.26        12.62 
TCGA-06-0649 TCGA-06-1087 TCGA-06-2561 TCGA-06-6390 TCGA-06-6694 TCGA-08-0246 
        2.10         4.04        17.65         5.39         7.36         4.18 
TCGA-08-0353 TCGA-08-0389 TCGA-08-0392 TCGA-08-0510 TCGA-08-0512 TCGA-12-0616 
        8.42        15.35         0.72         4.27        42.15        14.73 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0822 TCGA-12-1098 TCGA-14-0817 TCGA-16-0846 
       12.13         3.65        23.51         3.98         5.39         3.91 
TCGA-16-0850 TCGA-19-1388 TCGA-26-6174 TCGA-28-2514 TCGA-28-5220 
       16.37        12.95         2.33         5.26        12.76 

$`DEL PEAK 15(6P25.3) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5411 
       18.64        21.40        42.77        59.38        11.74         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        4.54         8.81         8.98         8.55         2.73         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        4.57         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 
        4.77         4.96        26.79         1.87         3.12         2.56 
TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 
       14.60        17.72        15.35        21.73        15.65        25.68 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       14.73        59.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
        0.95         6.21        23.05        13.78         3.25         2.89 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       26.33        15.95         1.38         3.75        32.05        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.97        17.79         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 
        7.17        17.49         7.96         3.42        17.59        29.03 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        8.61        14.27         3.39        25.38         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 
        0.16         4.08        24.23         7.00        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 
       16.80        17.79        28.54        10.03         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.60        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        24.76        18.08        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         9.21         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2502 TCGA-32-1970 TCGA-32-1973 
        1.22         1.55         2.83         0.66        15.39        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85        19.50         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 
       22.78        25.18        21.14        19.86        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6577 TCGA-74-6578 
       12.46         4.08         1.45        25.58         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        8.22         7.50         4.54         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6286 
       36.85        16.70         3.29         2.70        17.06        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55       117.50         7.69        43.89        36.36 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 
       60.10        40.18         0.26        21.01        53.62        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       26.76        37.38        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
       81.96        75.25        47.93        72.92        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       36.56        78.28        46.42        18.84        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       37.45        72.95        24.20        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 
       11.24        17.88        30.74        16.18        19.96        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US 
       46.06        24.59        27.81        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 
       75.16        46.06        65.75        87.45        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       19.89        16.83       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       23.31        41.98         2.76        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
       44.42        38.89         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       14.30        29.13        93.21        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       21.30        75.02         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       13.08        73.48        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-6692 
       47.77        52.21        18.77        14.93        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       13.68        14.24        16.01        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 
       21.53        15.02        16.44        22.26        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       48.69         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
       14.96         0.10         0.10        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 
       39.48        39.09         0.23        50.63         0.49        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
       28.27        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B 
        0.10         5.33        16.93         1.81        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74O TCGA-HW-7486 
       17.65         2.43        10.52        15.35         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       45.44        41.49        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X 
       42.54        31.63        12.76        28.87        20.71        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40         0.23         6.71         7.99         2.37         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        5.88         7.96         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       12.62        15.85        14.04        14.83        14.53        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW 
        2.07        19.59        30.67        62.17        87.12        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       40.93        35.38        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX 
       26.47        18.61        18.64        14.07        36.13        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C 
       54.77        48.33        49.32        34.78        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU 
       36.69        33.73        31.20        30.05        26.14        33.93 
TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF 
       31.36        43.20        13.51         0.10        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 
       37.71        20.81        11.77         4.73        18.35        23.18 
TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 
       10.59        35.41        20.71        82.59        20.61        87.06 
TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       77.65        53.10        42.74        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
       14.14         3.62        10.72        18.31         6.87        14.73 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 
       20.84        27.25        22.72        12.62        51.32        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 
       23.18        99.98        48.95        16.54        16.93        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       14.47        13.87        15.95        12.23         9.90         7.73 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 
        3.98        22.72        25.35        14.30        26.70        11.90 
TCGA-06-0140 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        0.20         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 
       10.45         3.19        10.82         9.44        11.80        56.91 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       10.65        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.04        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        27.22        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.40         5.56         0.39         7.66         8.42 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        7.40        11.84         0.53        15.02         0.72        19.82 
TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 
       13.64        20.42        48.69        10.82         9.01        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0646 
        4.70         9.57         3.16        35.11         5.75         5.75 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.80        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.70         0.92        43.46        46.19         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79        11.84        15.32        13.61        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
       12.49         4.93        12.56        30.64         5.95        16.64 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6693 
        5.98         4.37         0.43        31.50         7.79       120.56 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        37.84       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       12.16         9.80        29.23        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 TCGA-08-0514 TCGA-08-0516 
       14.93        18.02        13.97        12.56        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.68        19.33        10.75         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       18.41         7.56        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 
       94.78         0.10        38.17        25.97        26.66        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0867 
       14.53         4.14         2.24        11.24         1.35         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       53.19        13.28        26.07        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 
       10.75         9.07         5.95         4.64        31.33        14.86 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        5.49         1.58         7.92         7.30        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
       13.64         5.16        22.68         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                       145.05                        211.17 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                        12.13                         16.70 
[1] "0.1 - 145.1 (12.1)" "0.0 - 211.2 (16.7)"
[1] "hr=" "1.8"
D45V2, continuous
D45V3, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED    88  50
  DEL PEAK 15(6P25.3) WILD-TYPE 485 462
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED     88   50
  DEL PEAK 15(6P25.3) WILD-TYPE  485  462
                        clus
vv                       DEL PEAK 15(6P25.3) MUTATED
  BRAIN                                           88
  CENTRAL NERVOUS SYSTEM                          50
                        clus
vv                       DEL PEAK 15(6P25.3) WILD-TYPE
  BRAIN                                            485
  CENTRAL NERVOUS SYSTEM                           462
[1] 2 2
[1] FALSE
D45V4, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED    57  81
  DEL PEAK 15(6P25.3) WILD-TYPE 396 551
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED     57   81
  DEL PEAK 15(6P25.3) WILD-TYPE  396  551
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  FEMALE                          57                           396
  MALE                            81                           551
[1] 2 2
[1] FALSE
D45V5, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED    28  97
  DEL PEAK 15(6P25.3) WILD-TYPE 230 673
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED     28   97
  DEL PEAK 15(6P25.3) WILD-TYPE  230  673
     clus
vv    DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  NO                           28                           230
  YES                          97                           673
[1] 2 2
[1] FALSE
D45V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 15(6P25.3) MUTATED            24                             3
  DEL PEAK 15(6P25.3) WILD-TYPE         170                            27
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 15(6P25.3) MUTATED                 10                16
  DEL PEAK 15(6P25.3) WILD-TYPE              119               173
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 15(6P25.3) MUTATED                     2
  DEL PEAK 15(6P25.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 15(6P25.3) MUTATED                                83
  DEL PEAK 15(6P25.3) WILD-TYPE                             442
D45V7, multiclass
                                 clus
vv                                DEL PEAK 15(6P25.3) MUTATED
  ASTROCYTOMA                                              24
  GLIOBLASTOMA MULTIFORME (GBM)                             3
  OLIGOASTROCYTOMA                                         10
  OLIGODENDROGLIOMA                                        16
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          83
                                 clus
vv                                DEL PEAK 15(6P25.3) WILD-TYPE
  ASTROCYTOMA                                               170
  GLIOBLASTOMA MULTIFORME (GBM)                              27
  OLIGOASTROCYTOMA                                          119
  OLIGODENDROGLIOMA                                         173
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           442
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 15(6P25.3) MUTATED                                  1     3
  DEL PEAK 15(6P25.3) WILD-TYPE                                0    18
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 15(6P25.3) MUTATED                          10   119
  DEL PEAK 15(6P25.3) WILD-TYPE                        61   840
D45V8, multiclass
                                  clus
vv                                 DEL PEAK 15(6P25.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           1
  ASIAN                                                      3
  BLACK OR AFRICAN AMERICAN                                 10
  WHITE                                                    119
                                  clus
vv                                 DEL PEAK 15(6P25.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                       18
  BLACK OR AFRICAN AMERICAN                                   61
  WHITE                                                      840
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V9, binary
                               cls
clus                              0   1
  DEL PEAK 15(6P25.3) MUTATED     7 116
  DEL PEAK 15(6P25.3) WILD-TYPE  37 805
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(6P25.3) MUTATED      7  116
  DEL PEAK 15(6P25.3) WILD-TYPE   37  805
                        clus
vv                       DEL PEAK 15(6P25.3) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         116
                        clus
vv                       DEL PEAK 15(6P25.3) WILD-TYPE
  HISPANIC OR LATINO                                37
  NOT HISPANIC OR LATINO                           805
[1] 2 2
[1] FALSE

Clustering(46) Variable = DEL PEAK 16(6Q22.31) MUTATION ANALYSIS
D46V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 16(6Q22.31) MUTATED    70 167
  DEL PEAK 16(6Q22.31) WILD-TYPE 410 431
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           237                            841 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           167                            431 
$`DEL PEAK 16(6Q22.31) MUTATED`
TCGA-19-A6J4 TCGA-DH-A66B TCGA-HT-A619 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
        3.98        42.05        21.40        15.32        11.74         3.55 
TCGA-06-5413 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-6699 TCGA-06-A5U1 
        8.81         8.55         6.71         3.75         1.55         1.87 
TCGA-06-A6S1 TCGA-12-0615 TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-12-5299 
        2.56        15.35         6.77        44.02        14.53         3.22 
TCGA-14-0736 TCGA-14-0865 TCGA-14-1396 TCGA-14-1453 TCGA-14-1823 TCGA-14-4157 
       15.12        16.50         1.12         1.15        17.85         3.42 
TCGA-16-1045 TCGA-16-1060 TCGA-16-1063 TCGA-19-1392 TCGA-19-2619 TCGA-19-2629 
       29.03         9.14        13.97         3.65         9.67        24.23 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        7.04         6.64        18.90        14.96        10.03        13.87 
TCGA-26-1443 TCGA-27-1832 TCGA-27-1833 TCGA-27-2524 TCGA-27-2526 TCGA-28-1750 
        7.13         9.86        24.23         7.59         2.86         8.35 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1980 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 
        6.74         4.77         1.18        15.02        15.95        22.78 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 
       21.14         3.72        12.59        10.85         0.85        13.35 
TCGA-41-3392 TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
        0.99         0.20        15.12        25.58         3.45        20.91 
TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-6282 TCGA-76-6285 
        4.80         3.09         3.65         9.17        17.06         8.35 
TCGA-OX-A56R TCGA-CS-4944 TCGA-CS-5397 TCGA-CS-6666 TCGA-DB-5280 TCGA-DB-A4XF 
        5.92        60.10         6.38        46.95        36.56        33.57 
TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A75M TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5855 
       31.63        25.48        17.88        30.21        18.02         6.81 
TCGA-DU-5872 TCGA-DU-6400 TCGA-DU-6405 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7012 
       17.49         1.22        19.89         2.40        11.47         6.54 
TCGA-DU-7014 TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-A7T6 TCGA-DU-A7TC 
      117.40        18.94         5.10        23.74        17.98        37.38 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-A7YK TCGA-E1-A7YQ TCGA-E1-A7YS 
       41.13        79.99        57.93        12.43        51.88        15.32 
TCGA-E1-A7Z2 TCGA-FG-5963 TCGA-FG-7636 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A6J3 
       13.08        25.48        17.88        32.61        38.27        22.26 
TCGA-FN-7833 TCGA-HT-7475 TCGA-HT-7606 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7692 
       27.52        17.42        17.29        31.69        14.96         2.96 
TCGA-HT-7855 TCGA-HT-7884 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RB TCGA-HT-A617 
       19.23        11.28        15.72         0.23         0.10        16.14 
TCGA-HW-A5KK TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
       12.76         0.23         2.30         7.96         7.59         1.28 
TCGA-P5-A72W TCGA-P5-A780 TCGA-QH-A6CS TCGA-QH-A6CX TCGA-QH-A870 TCGA-RY-A83Z 
       10.42         2.37        19.33        12.23        12.99         9.90 
TCGA-S9-A6TZ TCGA-S9-A6U6 TCGA-S9-A7IS TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 
       36.82        35.15         7.92        10.39        99.06        31.59 
TCGA-TM-A7CF TCGA-TM-A84Q TCGA-TQ-A7RF TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       65.39        25.38        21.37        26.99        31.36        45.93 
TCGA-VM-A8CD TCGA-VM-A8CF TCGA-WY-A85B TCGA-06-0209 TCGA-02-0003 TCGA-02-0007 
        7.89        20.02        45.80         7.63         4.73        23.18 
TCGA-02-0014 TCGA-02-0023 TCGA-02-0026 TCGA-02-0038 TCGA-02-0039 TCGA-02-0048 
       82.59        20.12        24.59        10.72        10.52         3.22 
TCGA-02-0051 TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 TCGA-02-0074 TCGA-02-0080 
       15.09         8.35         6.02        26.43        10.19        89.72 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0099 TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 
       51.32         8.81         3.48        11.67        92.65        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0281 TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 
       48.95        16.54         3.98        12.23         7.73        10.62 
TCGA-02-0330 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-2466 TCGA-02-2483 
       15.91        14.50        10.55        47.11        16.80        15.32 
TCGA-06-0122 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 TCGA-06-0154 TCGA-06-0162 
        6.15        12.95        24.23        10.29        13.94         3.42 
TCGA-06-0166 TCGA-06-0171 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0192 
        5.85        13.12        69.90        73.84        27.22        38.96 
TCGA-06-0201 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0402 TCGA-06-0644 
        0.39        15.02        24.16         0.72         0.26        12.62 
TCGA-06-0646 TCGA-06-0649 TCGA-06-0750 TCGA-06-2557 TCGA-06-2561 TCGA-06-6390 
        5.75         2.10         0.92         1.08        17.65         5.39 
TCGA-06-6694 TCGA-08-0246 TCGA-08-0353 TCGA-08-0355 TCGA-08-0358 TCGA-08-0375 
        7.36         4.18         8.42        24.56        22.29        12.23 
TCGA-08-0380 TCGA-08-0392 TCGA-08-0510 TCGA-08-0512 TCGA-08-0517 TCGA-08-0525 
       14.93         0.72         4.27        42.15        58.68        15.98 
TCGA-12-0616 TCGA-12-0654 TCGA-12-0656 TCGA-12-0691 TCGA-12-0692 TCGA-12-0772 
       14.73         7.59        94.78        12.13         3.65        53.85 
TCGA-12-0780 TCGA-12-0822 TCGA-12-1089 TCGA-12-1093 TCGA-12-1095 TCGA-12-1098 
       14.86        23.51         5.82        15.98        15.85         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0817 TCGA-14-1037 TCGA-15-0742 TCGA-16-0846 
        4.14         2.24         5.39        19.30        13.78         3.91 
TCGA-19-0962 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5213 
        0.66         5.26        14.93        11.28        14.53        31.27 
TCGA-28-5220 TCGA-28-6450 TCGA-76-6660 
       12.76         5.42         3.75 

$`DEL PEAK 16(6Q22.31) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-7300 
        1.48        51.55        46.88        46.72        31.82        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 
       45.60        42.77        59.38         8.35         4.54         8.98 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        2.73         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TK 
        4.77         4.77         4.96        26.79         3.12        14.60 
TCGA-06-A7TL TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
       17.72        21.73        15.65        25.68        14.73        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       26.93        15.22        10.95        12.69        34.92        14.93 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 
        2.04        11.97         0.95         6.21        23.05        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 
        3.25         2.89        26.33        15.95         1.38         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.05        58.78        23.11         7.10        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.96         6.67        12.43         0.99         1.97        17.79 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-16-0848 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-16-1460 
       17.59         4.57        10.29        14.01        21.24         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        8.61        14.27         3.39        25.38         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        3.25         0.13         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 
        4.08         7.00        17.19         8.02         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 
        1.78        22.49        14.07        16.80        17.79        28.54 
TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        9.73         9.37         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        5.06        16.60        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2527 
       11.51        24.76        18.08        16.77        16.08        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         9.21         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-32-1970 
        1.22         1.55         2.83         0.13         0.66        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 
       21.07         0.49         0.10        15.85        19.50         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2632 
       12.69        14.86        16.93        12.23        20.78         8.84 
TCGA-32-2638 TCGA-32-4213 TCGA-32-5222 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 
       25.18        19.86        19.23         8.94         9.53         4.44 
TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-74-6577 TCGA-74-6578 
       11.84        12.46         4.08         1.45         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        8.22         7.50         4.54         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        3.29         2.70        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 
       34.45        18.64        36.20         6.28        20.55       117.50 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
        7.69        43.89        36.36        40.18         0.26        21.01 
TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 TCGA-CS-6668 
       53.62        17.69        26.76        37.38        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.86        91.13        44.52        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64P 
       30.21        39.78        37.45        72.95        24.20        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        11.24        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       63.88        46.06        24.59        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 
       54.25        23.21        17.46        13.71        18.61        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 
       17.46         6.74        13.38         8.45       182.33        18.94 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       46.06        65.75        87.45         7.04        11.64       133.74 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7007 TCGA-DU-7008 
       16.83        94.52       114.08         7.96        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
      154.36        14.99       105.21         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 
       26.30        10.36         7.96        94.32        44.02        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 
       60.30        23.31        41.98         2.76        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TD 
       26.76        21.30       139.04        84.33        51.52         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5311 
       44.42        38.89         0.56        50.14        67.46       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YU 
        3.65        19.46        16.18        21.30        75.02         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       32.45        36.82       146.14        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       39.48         0.23         0.20        47.77        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       16.01        14.96        22.52        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       23.70        14.76        21.53        15.02        16.44        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7468 
       10.78        36.66        48.69         5.72         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
      122.47         4.57         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7691 
       44.68         6.05        42.74         0.10         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 
       17.52         6.90        14.53        39.48        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47         3.72        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
       13.78         0.23        29.59        34.19        28.27        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 
        0.13        20.22         0.07        27.35         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.93         1.81        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        68.32        69.27        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       42.54        24.92        31.63        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40        14.40         6.71         7.99         2.37         9.44 
TCGA-P5-A5F1 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        5.88         0.23        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        14.53        13.61        13.41         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       11.08        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U1 
       18.77        41.10        40.93        35.38        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       29.85        32.61        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       30.05        98.63        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       49.32        34.78        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       18.61        14.93        23.80        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-VM-A8C9 TCGA-VM-A8CA 
       26.14        25.87        33.93        61.41        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        0.10        39.16        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0001 TCGA-02-0006 TCGA-02-0009 
       46.88        37.71        20.81        11.77        18.35        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 
       35.41        20.71        20.61        87.06        77.65        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       18.31         6.87        14.73        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
       19.86         9.57        19.73        28.70        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0087 TCGA-02-0089 
       20.84        27.25        22.72        12.62        57.76        16.96 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0260 
       27.02        65.00        17.65        23.18        99.98        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0321 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        9.90         7.33        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       12.39        11.34         9.27        16.21         3.35        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       15.45        20.32         2.70        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        22.72        33.67        25.35        14.30        26.70 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
       11.90         0.20         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 
       10.45         3.19        10.82         9.44        11.80        56.91 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       10.65        19.66         3.29         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0188 
       91.00         4.18        88.14        20.25         3.65        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0206 
       15.42        10.42         4.67         7.40         5.56         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0221 TCGA-06-0237 
        8.42         7.40        11.84         0.53        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 
       13.32        20.42        48.69        10.82         9.01        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 
        4.70         9.57         3.16        35.11         5.75         9.80 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        2.70        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
       20.78        26.76        23.93         6.84         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 
       11.84        15.32        13.61        33.90        12.49         4.93 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6693 TCGA-08-0244 TCGA-08-0245 
        0.43        31.50         7.79       120.56        22.68        37.84 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      115.86         1.74         8.42        25.71        12.16         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
       29.23        65.33         1.28        17.95        31.10        37.58 
TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0514 
        3.39        18.02        15.35        13.97        12.56        11.08 
TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       19.59        19.33        10.75         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0657 TCGA-12-0662 
        7.56        12.99        34.92        10.45         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 
       25.97        26.66        20.38        28.41        15.06        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        7.63         9.73        14.93        91.76        24.79        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-14-0789 
        7.59        33.21        12.23         9.11        14.53        11.24 
TCGA-14-0813 TCGA-14-0867 TCGA-14-0871 TCGA-14-1043 TCGA-15-1444 TCGA-15-1446 
        1.35         2.04        28.93         0.79        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 
       53.19        13.28        26.07        16.37        11.77        21.90 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 
       10.75         9.07         5.95        12.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       14.86         5.49         1.58         7.92         2.33         7.30 
TCGA-28-5208 TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       17.88        11.77        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 
       22.68         7.36        11.38         5.42         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                        117.40                         211.17 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                         12.99                          17.19 
[1] "0.1 - 117.4 (13.0)" "0.0 - 211.2 (17.2)"
[1] "hr=" "1.9"
D46V2, continuous
D46V3, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED   162  77
  DEL PEAK 16(6Q22.31) WILD-TYPE 411 435
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED    162   77
  DEL PEAK 16(6Q22.31) WILD-TYPE  411  435
                        clus
vv                       DEL PEAK 16(6Q22.31) MUTATED
  BRAIN                                           162
  CENTRAL NERVOUS SYSTEM                           77
                        clus
vv                       DEL PEAK 16(6Q22.31) WILD-TYPE
  BRAIN                                             411
  CENTRAL NERVOUS SYSTEM                            435
[1] 2 2
[1] FALSE
D46V4, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED   110 129
  DEL PEAK 16(6Q22.31) WILD-TYPE 343 503
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED    110  129
  DEL PEAK 16(6Q22.31) WILD-TYPE  343  503
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  FEMALE                          110                            343
  MALE                            129                            503
[1] 2 2
[1] FALSE
D46V5, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED    43 181
  DEL PEAK 16(6Q22.31) WILD-TYPE 215 589
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED     43  181
  DEL PEAK 16(6Q22.31) WILD-TYPE  215  589
     clus
vv    DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  NO                            43                            215
  YES                          181                            589
[1] 2 2
[1] FALSE
D46V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 16(6Q22.31) MUTATED            47                             7
  DEL PEAK 16(6Q22.31) WILD-TYPE         147                            23
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 16(6Q22.31) MUTATED                 11                19
  DEL PEAK 16(6Q22.31) WILD-TYPE              118               170
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 16(6Q22.31) MUTATED                     7
  DEL PEAK 16(6Q22.31) WILD-TYPE                  11
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 16(6Q22.31) MUTATED                               148
  DEL PEAK 16(6Q22.31) WILD-TYPE                             377
D46V7, multiclass
                                 clus
vv                                DEL PEAK 16(6Q22.31) MUTATED
  ASTROCYTOMA                                               47
  GLIOBLASTOMA MULTIFORME (GBM)                              7
  OLIGOASTROCYTOMA                                          11
  OLIGODENDROGLIOMA                                         19
  TREATED PRIMARY GBM                                        7
  UNTREATED PRIMARY (DE NOVO) GBM                          148
                                 clus
vv                                DEL PEAK 16(6Q22.31) WILD-TYPE
  ASTROCYTOMA                                                147
  GLIOBLASTOMA MULTIFORME (GBM)                               23
  OLIGOASTROCYTOMA                                           118
  OLIGODENDROGLIOMA                                          170
  TREATED PRIMARY GBM                                         11
  UNTREATED PRIMARY (DE NOVO) GBM                            377
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 16(6Q22.31) MUTATED                                  1     6
  DEL PEAK 16(6Q22.31) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 16(6Q22.31) MUTATED                          20   205
  DEL PEAK 16(6Q22.31) WILD-TYPE                        51   754
D46V8, multiclass
                                  clus
vv                                 DEL PEAK 16(6Q22.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  20
  WHITE                                                     205
                                  clus
vv                                 DEL PEAK 16(6Q22.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    51
  WHITE                                                       754
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V9, binary
                                cls
clus                               0   1
  DEL PEAK 16(6Q22.31) MUTATED     5 204
  DEL PEAK 16(6Q22.31) WILD-TYPE  39 717
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(6Q22.31) MUTATED      5  204
  DEL PEAK 16(6Q22.31) WILD-TYPE   39  717
                        clus
vv                       DEL PEAK 16(6Q22.31) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          204
                        clus
vv                       DEL PEAK 16(6Q22.31) WILD-TYPE
  HISPANIC OR LATINO                                 39
  NOT HISPANIC OR LATINO                            717
[1] 2 2
[1] FALSE

Clustering(47) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
D47V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 17(6Q26) MUTATED    77 181
  DEL PEAK 17(6Q26) WILD-TYPE 403 417
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        258                         820 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        181                         417 
$`DEL PEAK 17(6Q26) MUTATED`
TCGA-19-A6J4 TCGA-DH-A66B TCGA-HT-A619 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
        3.98        42.05        21.40        15.32        11.74         3.55 
TCGA-06-5413 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-5859 TCGA-06-6699 
        8.81         8.55         6.71         3.75         4.57         1.55 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-12-0615 TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 
        1.87         2.56        15.35         6.77        44.02        14.53 
TCGA-12-5299 TCGA-14-0736 TCGA-14-0862 TCGA-14-0865 TCGA-14-1395 TCGA-14-1402 
        3.22        15.12         2.89        16.50         1.38        32.05 
TCGA-14-1453 TCGA-14-1823 TCGA-14-4157 TCGA-16-1045 TCGA-16-1047 TCGA-16-1060 
        1.15        17.85         3.42        29.03         4.57         9.14 
TCGA-16-1063 TCGA-19-1392 TCGA-19-1789 TCGA-19-2619 TCGA-19-2629 TCGA-19-2631 
       13.97         3.65         3.25         9.67        24.23         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 TCGA-19-5956 TCGA-19-5960 TCGA-26-1439 
        7.04         6.64        18.90        22.49        14.96        13.87 
TCGA-26-1443 TCGA-27-1832 TCGA-27-1833 TCGA-27-2518 TCGA-27-2521 TCGA-27-2524 
        7.13         9.86        24.23        24.76        16.77         7.59 
TCGA-28-1747 TCGA-28-1750 TCGA-28-1753 TCGA-28-2506 TCGA-28-2509 TCGA-32-1978 
        2.53         8.35         1.22         6.74         4.77        15.85 
TCGA-32-1980 TCGA-32-1982 TCGA-32-2495 TCGA-32-2615 TCGA-32-4208 TCGA-32-4210 
        1.18         4.67        15.02        15.95        21.14         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-41-2572 TCGA-41-3392 TCGA-41-4097 TCGA-41-5651 
       12.59        10.85        13.35         0.99         0.20        15.12 
TCGA-4W-AA9T TCGA-74-6573 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-6282 
       25.58         3.45         3.09         3.65         9.17        17.06 
TCGA-76-6285 TCGA-OX-A56R TCGA-CS-4944 TCGA-CS-5397 TCGA-CS-6666 TCGA-DB-5280 
        8.35         5.92        60.10         6.38        46.95        36.56 
TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A75M TCGA-DH-A669 TCGA-DU-5847 
       33.57        31.63        25.48        17.88        30.21        18.02 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6400 TCGA-DU-6405 TCGA-DU-6542 
        8.45         6.81        17.49         1.22        19.89         2.40 
TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 
       11.47         6.54       117.40        18.94         5.10        23.74 
TCGA-DU-A7T6 TCGA-DU-A7TC TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YJ TCGA-E1-A7YK 
       17.98        37.38        57.93       130.78        19.46        12.43 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7Z2 TCGA-E1-A7Z4 TCGA-FG-5963 TCGA-FG-7636 
       51.88        15.32        13.08       145.05        25.48        17.88 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A6J3 TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7475 
       32.61        38.27        22.26        27.52         0.03        17.42 
TCGA-HT-7606 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7692 TCGA-HT-7855 TCGA-HT-7884 
       17.29        31.69        14.96         2.96        19.23        11.28 
TCGA-HT-8108 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RB TCGA-HT-A617 TCGA-HW-A5KK 
        2.50        15.72         0.23         0.10        16.14        12.76 
TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W 
        0.23         2.30         7.96         7.59         1.28        10.42 
TCGA-P5-A736 TCGA-P5-A780 TCGA-QH-A6CS TCGA-QH-A6CX TCGA-QH-A870 TCGA-S9-A6TZ 
        7.56         2.37        19.33        12.23        12.99        36.82 
TCGA-S9-A6U6 TCGA-S9-A7IX TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7CF TCGA-TM-A84Q 
       35.15        26.93        99.06        31.59        65.39        25.38 
TCGA-TQ-A7RF TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8CD TCGA-VM-A8CF 
       21.37        26.99        31.36        45.93         7.89        20.02 
TCGA-VV-A86M TCGA-WY-A85B TCGA-06-0209 TCGA-02-0003 TCGA-02-0007 TCGA-02-0015 
       16.01        45.80         7.63         4.73        23.18        20.61 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0039 TCGA-02-0048 
       77.65        20.12        24.59        12.16        10.52         3.22 
TCGA-02-0051 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0074 
       15.09        19.86         8.35         9.57         6.02        10.19 
TCGA-02-0080 TCGA-02-0086 TCGA-02-0089 TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 
       89.72         8.81        16.96        11.67        92.65        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0281 TCGA-02-0289 TCGA-02-0317 TCGA-02-0324 
       48.95        16.54         3.98        14.20        12.23         7.73 
TCGA-02-0325 TCGA-02-0330 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-2466 
       10.62        15.91        14.50        10.55        47.11        16.80 
TCGA-02-2483 TCGA-06-0124 TCGA-06-0125 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 
       15.32        20.38        47.61        12.95        24.23        10.29 
TCGA-06-0142 TCGA-06-0155 TCGA-06-0162 TCGA-06-0166 TCGA-06-0184 TCGA-06-0185 
        2.20        10.45         3.42         5.85        69.90        73.84 
TCGA-06-0187 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0644 TCGA-06-0646 
       27.22        15.02        24.16         0.72        12.62         5.75 
TCGA-06-0649 TCGA-06-0750 TCGA-06-0878 TCGA-06-0882 TCGA-06-1084 TCGA-06-1087 
        2.10         0.92         7.17        20.78        23.93         4.04 
TCGA-06-2557 TCGA-06-2561 TCGA-06-6390 TCGA-06-6694 TCGA-08-0246 TCGA-08-0353 
        1.08        17.65         5.39         7.36         4.18         8.42 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0392 
       24.56        31.10        22.29        12.23        14.93         0.72 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0517 TCGA-08-0525 TCGA-12-0616 TCGA-12-0654 
        4.27        42.15        58.68        15.98        14.73         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 
       94.78         0.10        12.13         3.65        28.41        15.06 
TCGA-12-0772 TCGA-12-0780 TCGA-12-0822 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 
       53.85        14.86        23.51         5.82        33.21        15.98 
TCGA-12-1095 TCGA-12-1099 TCGA-14-0817 TCGA-14-1037 TCGA-15-0742 TCGA-15-1446 
       15.85         4.14         5.39        19.30        13.78        19.10 
TCGA-16-0846 TCGA-19-0962 TCGA-19-1386 TCGA-26-6173 TCGA-28-2514 TCGA-28-5204 
        3.91         0.66         9.07         7.92         5.26        14.93 
TCGA-28-5207 TCGA-28-5209 TCGA-28-5213 TCGA-28-5220 TCGA-76-6660 TCGA-81-5911 
       11.28        14.53        31.27        12.76         3.75        17.72 

$`DEL PEAK 17(6Q26) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-7300 
        1.48        51.55        46.88        46.72        31.82        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 
       45.60        42.77        59.38         8.35         4.54         8.98 
TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        2.73         6.15         5.23         8.32        12.85         4.77 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TK TCGA-06-A7TL 
        4.77         4.96        26.79         3.12        14.60        17.72 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 
       21.73        15.65        25.68        14.73        59.77        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5301 
       15.22        10.95        12.69        34.92        14.93         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
       11.97         0.95         6.21        23.05        13.78         3.25 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 
       26.33        15.95         1.12         3.75        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.97        17.79         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-16-0848 TCGA-16-1055 TCGA-16-1056 
       17.49         7.96         3.78        17.59        10.29        14.01 
TCGA-16-1062 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 
       21.24         6.41         8.61        14.27         3.39        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        7.17        12.66         0.13         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 
        0.16         4.08        17.19         8.02         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
        1.78        14.07        16.80        17.79        28.54        10.03 
TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        9.73         9.37         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        5.06        16.60        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       11.51        18.08        16.08         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1755 TCGA-28-1756 
        0.20         9.21         7.63         8.48         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        0.13         0.66        15.39        21.07         0.49         0.10 
TCGA-32-1979 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
       19.50        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 
        8.84        22.78        25.18        19.86        19.23         0.85 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9R 
        8.94         9.53         4.44        11.84        12.46         4.08 
TCGA-4W-AA9S TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        1.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        4.80         4.54         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        2.70        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       18.64        36.20         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       43.89        36.36        40.18         0.26        21.01        53.62 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.69        26.76        37.38        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       91.13        44.52        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q 
       39.78        37.45        72.95        24.20        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 
       12.10        11.24        30.74        16.18        19.96        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       46.06        24.59        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 
       23.21        17.46        13.71        18.61        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6392 
        6.74        13.38       182.33        18.94        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04        11.64       133.74        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
      114.08         7.96        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
      105.21         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
        7.96        94.32        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
       41.98         2.76        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       95.11        20.98        22.29        11.41        26.76        21.30 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
      139.04        84.33        51.52         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 
        0.56        50.14        67.46        41.13        79.99       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       78.21        95.57        14.30        29.13        93.21         3.65 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       16.18        21.30        75.02         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
      146.14        73.48        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       47.77        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       41.33        18.44        15.35        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
        5.72         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 
       29.85        23.18       122.47         4.57         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         0.10        17.52         6.90        14.53        39.48 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC 
       26.04         0.13        20.22         0.07        27.35         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C 
        2.70        16.93         1.81        16.83        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 
       45.44        41.49        68.32        69.27        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM 
       40.01        42.54        24.92        31.63        28.87        20.71 
TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       19.00        14.40        14.40         6.71         7.99         2.37 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        9.44         5.88         0.23        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
        9.01        13.61         9.60        12.23        19.20         3.45 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.83        14.53        13.61        13.41         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       11.08        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 
       87.12        18.77        41.10        40.93        35.38        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       25.81        29.85        32.61        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
       36.13         7.92        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z 
      169.84        10.39        30.05        98.63        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C 
       54.77        48.33        49.32        34.78        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RG 
       24.79        33.24        18.61        14.93        23.80        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       43.20        13.51         0.10        39.16        23.47        37.05 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0001 TCGA-02-0006 
       43.40        46.88        37.71        20.81        11.77        18.35 
TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0024 
       10.59        35.41        20.71        82.59        87.06        53.10 
TCGA-02-0025 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       42.74        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       18.31         6.87        14.73        12.59         6.54         2.50 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 
       19.73        26.43        28.70        25.05         5.49        20.84 
TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0099 
       27.25        22.72        12.62        51.32        57.76         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0260 
       27.02        65.00        17.65        23.18        99.98        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0290 TCGA-02-0321 
       17.72        10.75        14.47        13.87        15.95         9.90 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.33        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2485 
       11.34         9.27        16.21         3.35        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
       20.32         2.70         6.15         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        25.35        14.30        26.70        11.90         0.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        12.33        13.94         3.19        10.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
        9.44        11.80        56.91        10.65        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.12         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       88.14        20.25         3.65        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0221 TCGA-06-0237 
        8.42         7.40        11.84         0.53        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 
       72.36         4.70         9.57         3.16        35.11         5.75 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.80        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0875 TCGA-06-0876 TCGA-06-0879 TCGA-06-0881 
        2.70         2.70        43.46        46.19        40.41        16.57 
TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       26.76         6.84        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       33.90        12.49         4.93        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
       16.64         5.98         4.37         0.43        31.50         7.79 
TCGA-06-6693 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
      120.56        22.68        37.84       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0354 TCGA-08-0357 TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
       17.95        37.58         3.39        18.02        15.35        13.97 
TCGA-08-0509 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       12.56        11.08        19.59        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        7.27        18.41         7.56        12.99        34.92        10.45 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0773 TCGA-12-0775 
       38.17        25.97        26.66        20.38        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.73        14.93        91.76        24.79        18.48        10.62 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 
       27.78        38.76         8.94        20.58       127.59         7.59 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 
       12.23         9.11        14.53         3.98         2.24        11.24 
TCGA-14-0813 TCGA-14-0867 TCGA-14-0871 TCGA-14-1043 TCGA-15-1444 TCGA-15-1447 
        1.35         2.04        28.93         0.79        50.53        53.19 
TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 
       13.28        26.07        16.37        11.77        21.90        10.75 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        5.95        12.95         4.64        31.33        14.86         5.49 
TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 TCGA-28-5208 TCGA-28-5211 TCGA-28-5214 
        1.58         2.33         7.30        17.88        11.77        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 
       11.01        13.64         5.16        22.68         5.42         7.36 
TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 TCGA-87-5896 
       11.38         5.42         1.61        26.30 

  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                       0.03                        0.07 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                     145.05                      211.17 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                      13.92                       17.19 
[1] "0.0 - 145.1 (13.9)" "0.1 - 211.2 (17.2)"
[1] "hr=" "1.8"
D47V2, continuous
D47V3, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED   179  81
  DEL PEAK 17(6Q26) WILD-TYPE 394 431
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED    179   81
  DEL PEAK 17(6Q26) WILD-TYPE  394  431
                        clus
vv                       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  BRAIN                                        179                         394
  CENTRAL NERVOUS SYSTEM                        81                         431
[1] 2 2
[1] FALSE
D47V4, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED   118 142
  DEL PEAK 17(6Q26) WILD-TYPE 335 490
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED    118  142
  DEL PEAK 17(6Q26) WILD-TYPE  335  490
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  FEMALE                       118                         335
  MALE                         142                         490
[1] 2 2
[1] FALSE
D47V5, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED    43 199
  DEL PEAK 17(6Q26) WILD-TYPE 215 571
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED     43  199
  DEL PEAK 17(6Q26) WILD-TYPE  215  571
     clus
vv    DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  NO                         43                         215
  YES                       199                         571
[1] 2 2
[1] FALSE
D47V6, continuous
                             vv
clus                          ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 17(6Q26) MUTATED            48                             8
  DEL PEAK 17(6Q26) WILD-TYPE         146                            22
                             vv
clus                          OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 17(6Q26) MUTATED                 12                21
  DEL PEAK 17(6Q26) WILD-TYPE              117               168
                             vv
clus                          TREATED PRIMARY GBM
  DEL PEAK 17(6Q26) MUTATED                     9
  DEL PEAK 17(6Q26) WILD-TYPE                   9
                             vv
clus                          UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 17(6Q26) MUTATED                               162
  DEL PEAK 17(6Q26) WILD-TYPE                             363
D47V7, multiclass
                                 clus
vv                                DEL PEAK 17(6Q26) MUTATED
  ASTROCYTOMA                                            48
  GLIOBLASTOMA MULTIFORME (GBM)                           8
  OLIGOASTROCYTOMA                                       12
  OLIGODENDROGLIOMA                                      21
  TREATED PRIMARY GBM                                     9
  UNTREATED PRIMARY (DE NOVO) GBM                       162
                                 clus
vv                                DEL PEAK 17(6Q26) WILD-TYPE
  ASTROCYTOMA                                             146
  GLIOBLASTOMA MULTIFORME (GBM)                            22
  OLIGOASTROCYTOMA                                        117
  OLIGODENDROGLIOMA                                       168
  TREATED PRIMARY GBM                                       9
  UNTREATED PRIMARY (DE NOVO) GBM                         363
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 17(6Q26) MUTATED                                  1     5
  DEL PEAK 17(6Q26) WILD-TYPE                                0    16
                             vv
clus                          BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 17(6Q26) MUTATED                          21   225
  DEL PEAK 17(6Q26) WILD-TYPE                        50   734
D47V8, multiclass
                                  clus
vv                                 DEL PEAK 17(6Q26) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                         1
  ASIAN                                                    5
  BLACK OR AFRICAN AMERICAN                               21
  WHITE                                                  225
                                  clus
vv                                 DEL PEAK 17(6Q26) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     16
  BLACK OR AFRICAN AMERICAN                                 50
  WHITE                                                    734
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V9, binary
                             cls
clus                            0   1
  DEL PEAK 17(6Q26) MUTATED     7 221
  DEL PEAK 17(6Q26) WILD-TYPE  37 700
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(6Q26) MUTATED      7  221
  DEL PEAK 17(6Q26) WILD-TYPE   37  700
                        clus
vv                       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  HISPANIC OR LATINO                             7                          37
  NOT HISPANIC OR LATINO                       221                         700
[1] 2 2
[1] FALSE

Clustering(48) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
D48V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 18(8P23.2) MUTATED    26  61
  DEL PEAK 18(8P23.2) WILD-TYPE 454 537
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           87                           991 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           61                           537 
$`DEL PEAK 18(8P23.2) MUTATED`
TCGA-DH-A66B TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-A5U1 TCGA-12-1598 
       42.05        11.74         8.35         8.81         1.87        15.65 
TCGA-12-3651 TCGA-14-0736 TCGA-14-0862 TCGA-14-1034 TCGA-14-1450 TCGA-14-1794 
       12.69        15.12         2.89        15.95        58.78         0.99 
TCGA-14-1823 TCGA-16-1056 TCGA-16-1063 TCGA-19-0960 TCGA-19-1786 TCGA-26-1439 
       17.85        14.01        13.97         8.61         7.17        13.87 
TCGA-26-5136 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1757 TCGA-28-2502 
       18.97        16.77         7.59         8.35         0.13         0.66 
TCGA-28-2509 TCGA-32-4208 TCGA-32-4210 TCGA-32-4719 TCGA-4W-AA9T TCGA-76-4934 
        4.77        21.14         3.72        10.85        25.58         2.53 
TCGA-CS-4943 TCGA-DB-5277 TCGA-DH-5140 TCGA-DH-5142 TCGA-DU-5847 TCGA-DU-7006 
       36.36        50.86        19.96        63.88        18.02        11.47 
TCGA-DU-8165 TCGA-DU-A7TC TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-A7YQ TCGA-E1-A7YV 
       19.13        37.38         0.56        41.13        51.88        32.45 
TCGA-HT-7475 TCGA-HT-7688 TCGA-HT-8564 TCGA-HT-A4DS TCGA-P5-A5F6 TCGA-QH-A6CV 
       17.42        31.69        15.72         0.23         1.28        14.53 
TCGA-S9-A6WM TCGA-TQ-A7RR TCGA-02-0001 TCGA-02-0009 TCGA-02-0025 TCGA-02-0051 
       19.86        25.87        11.77        10.59        42.74        15.09 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0086 TCGA-02-0106 TCGA-02-0111 TCGA-02-0115 
        9.57         6.02         8.81        11.67        23.18        15.65 
TCGA-02-0281 TCGA-02-0324 TCGA-02-0430 TCGA-02-2486 TCGA-06-0159 TCGA-06-0169 
        3.98         7.73        10.55        20.32         9.44         3.29 
TCGA-06-0171 TCGA-06-0195 TCGA-06-0216 TCGA-06-0410 TCGA-06-0743 TCGA-06-6693 
       13.12         7.40        24.16         4.70        26.40       120.56 
TCGA-08-0246 TCGA-08-0392 TCGA-08-0510 TCGA-08-0525 TCGA-12-0691 TCGA-12-0776 
        4.18         0.72         4.27        15.98        12.13         9.73 
TCGA-12-0826 TCGA-12-0827 TCGA-12-1093 TCGA-12-1098 TCGA-15-1447 TCGA-16-0846 
       27.78        38.76        15.98         3.98        53.19         3.91 
TCGA-19-1385 TCGA-28-2514 TCGA-28-5204 
       10.75         5.26        14.93 

$`DEL PEAK 18(8P23.2) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        3.55         4.54         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        3.75         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 
        4.77         1.55         4.77         4.96        26.79         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 
        2.56        14.60        17.72        15.35        21.73        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
       11.97         0.95         6.21        23.05        13.78         3.25 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       16.50        26.33         1.38         1.12         3.75        32.05 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.18         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
        6.67        12.43         1.97        17.79         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 
        7.17        17.49         7.96         3.78         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 
       29.03         4.57        10.29         9.14        21.24         6.41 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 
       14.27         3.39        25.38         3.65        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-A7UX 
        9.73         7.13         9.37         9.40         8.88        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        18.08        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2506 
        7.63         8.48         1.22         1.55         2.83         6.74 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.39        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.86        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       12.46         4.08         1.45         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.17        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
      117.50         7.69        43.89        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01        53.62         6.38        17.69        26.76        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       46.95        48.30        49.94        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       75.25        47.93        72.92        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
       78.28        46.42        18.84        30.21        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       46.06        24.59        30.21        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 
       54.25        23.21        17.46        13.71        18.61        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
      114.08         7.96         2.40        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
       14.99       105.21         6.54         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       44.02        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
       20.98        22.29        11.41        26.76        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
      139.04        84.33        51.52         7.50        44.42        38.89 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       50.14        67.46        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS 
       19.46        12.43        16.18        21.30        75.02        15.32 
TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
        0.76        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
       13.78         0.23        29.59        34.19        28.27        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       28.87        20.71        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.96         7.59         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        94.03        32.65        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       31.20        30.05        26.14        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        45.93        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0003 
       45.80        46.88        37.71        20.81         7.63         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       18.35        23.18        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 
       87.06        77.65        20.12        53.10        24.59        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 
       18.31         6.87        14.73         3.22        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        2.50        19.86         8.35        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72        12.62        51.32        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 
       27.02        65.00        17.65        92.65        99.98        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       16.54        16.93        17.72        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 
       14.20        15.95        12.23         9.90        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.32        15.45         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 
       13.94        10.45         3.19        10.82        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0173 TCGA-06-0174 
       56.91        10.65         5.85        19.66         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.04        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       38.96         4.67         5.56         0.39         7.66         8.42 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        7.40        11.84         0.53        15.02         0.72        19.82 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       13.64        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26        72.36         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       23.93         6.84         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6694 TCGA-08-0244 
        0.43        31.50         7.79         5.39         7.36        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       37.84       115.86         1.74         8.42        25.71        12.16 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        9.80        29.23        65.33         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0512 
       14.93        18.02        15.35        13.97        12.56        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.08        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        7.27        18.41         7.56        14.73        12.99        34.92 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       26.66         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.23         7.63        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       18.48        10.62        23.51         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        5.82         7.59        33.21        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 
       14.53         4.14         2.24        11.24         1.35         5.39 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
        2.04        28.93        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 
       19.10        13.28        26.07        16.37        11.77        21.90 
TCGA-19-0962 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 
        0.66         9.07         5.95        12.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       14.86         5.49         1.58         7.92         2.33         7.30 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        12.76         5.42 
TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        7.36        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                       120.56                        211.17 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                        13.12                         16.44 
[1] "0.1 - 120.6 (13.1)" "0.0 - 211.2 (16.4)"
[1] "hr=" "1.7"
D48V2, continuous
D48V3, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED    66  22
  DEL PEAK 18(8P23.2) WILD-TYPE 507 490
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED     66   22
  DEL PEAK 18(8P23.2) WILD-TYPE  507  490
                        clus
vv                       DEL PEAK 18(8P23.2) MUTATED
  BRAIN                                           66
  CENTRAL NERVOUS SYSTEM                          22
                        clus
vv                       DEL PEAK 18(8P23.2) WILD-TYPE
  BRAIN                                            507
  CENTRAL NERVOUS SYSTEM                           490
[1] 2 2
[1] FALSE
D48V4, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED    38  50
  DEL PEAK 18(8P23.2) WILD-TYPE 415 582
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED     38   50
  DEL PEAK 18(8P23.2) WILD-TYPE  415  582
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  FEMALE                          38                           415
  MALE                            50                           582
[1] 2 2
[1] FALSE
D48V5, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED    11  71
  DEL PEAK 18(8P23.2) WILD-TYPE 247 699
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED     11   71
  DEL PEAK 18(8P23.2) WILD-TYPE  247  699
     clus
vv    DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  NO                           11                           247
  YES                          71                           699
[1] 2 2
[1] FALSE
D48V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 18(8P23.2) MUTATED            13                             3
  DEL PEAK 18(8P23.2) WILD-TYPE         181                            27
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 18(8P23.2) MUTATED                  5                 4
  DEL PEAK 18(8P23.2) WILD-TYPE              124               185
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 18(8P23.2) MUTATED                     1
  DEL PEAK 18(8P23.2) WILD-TYPE                  17
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 18(8P23.2) MUTATED                                62
  DEL PEAK 18(8P23.2) WILD-TYPE                             463
D48V7, multiclass
                                 clus
vv                                DEL PEAK 18(8P23.2) MUTATED
  ASTROCYTOMA                                              13
  GLIOBLASTOMA MULTIFORME (GBM)                             3
  OLIGOASTROCYTOMA                                          5
  OLIGODENDROGLIOMA                                         4
  TREATED PRIMARY GBM                                       1
  UNTREATED PRIMARY (DE NOVO) GBM                          62
                                 clus
vv                                DEL PEAK 18(8P23.2) WILD-TYPE
  ASTROCYTOMA                                               181
  GLIOBLASTOMA MULTIFORME (GBM)                              27
  OLIGOASTROCYTOMA                                          124
  OLIGODENDROGLIOMA                                         185
  TREATED PRIMARY GBM                                        17
  UNTREATED PRIMARY (DE NOVO) GBM                           463
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 18(8P23.2) MUTATED                                  0     6
  DEL PEAK 18(8P23.2) WILD-TYPE                                1    15
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 18(8P23.2) MUTATED                           6    72
  DEL PEAK 18(8P23.2) WILD-TYPE                        65   887
D48V8, multiclass
                                  clus
vv                                 DEL PEAK 18(8P23.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      6
  BLACK OR AFRICAN AMERICAN                                  6
  WHITE                                                     72
                                  clus
vv                                 DEL PEAK 18(8P23.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       15
  BLACK OR AFRICAN AMERICAN                                   65
  WHITE                                                      887
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V9, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED     2  76
  DEL PEAK 18(8P23.2) WILD-TYPE  42 845
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED      2   76
  DEL PEAK 18(8P23.2) WILD-TYPE   42  845
                        clus
vv                       DEL PEAK 18(8P23.2) MUTATED
  HISPANIC OR LATINO                               2
  NOT HISPANIC OR LATINO                          76
                        clus
vv                       DEL PEAK 18(8P23.2) WILD-TYPE
  HISPANIC OR LATINO                                42
  NOT HISPANIC OR LATINO                           845
[1] 2 2
[1] FALSE

Clustering(49) Variable = DEL PEAK 19(8Q24.3) MUTATION ANALYSIS
D49V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 19(8Q24.3) MUTATED    29  49
  DEL PEAK 19(8Q24.3) WILD-TYPE 451 549
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           78                          1000 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           49                           549 
$`DEL PEAK 19(8Q24.3) MUTATED`
TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-12-1598 TCGA-12-5301 TCGA-14-0736 
       11.74         8.35         8.81        15.65         2.04        15.12 
TCGA-14-1034 TCGA-14-1450 TCGA-14-1794 TCGA-14-1823 TCGA-19-2619 TCGA-19-5950 
       15.95        58.78         0.99        17.85         9.67        17.19 
TCGA-26-1439 TCGA-28-1750 TCGA-28-2502 TCGA-28-2509 TCGA-32-4719 TCGA-41-3915 
       13.87         8.35         0.66         4.77        10.85        11.84 
TCGA-74-6584 TCGA-76-4934 TCGA-DB-5281 TCGA-DB-A64X TCGA-DH-5140 TCGA-DH-A7UU 
        7.50         2.53        78.28        18.51        19.96        13.71 
TCGA-DU-7006 TCGA-DU-7301 TCGA-DU-8165 TCGA-DU-A7TJ TCGA-E1-A7YD TCGA-E1-A7YI 
       11.47        25.91        19.13         0.56        14.30         3.65 
TCGA-E1-A7YQ TCGA-FG-5965 TCGA-FG-8185 TCGA-FG-A4MY TCGA-FG-A70Y TCGA-HT-7610 
       51.88        36.82        14.24        23.70        28.54        56.09 
TCGA-HT-7879 TCGA-HT-8111 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HW-8321 TCGA-P5-A5F6 
        3.68         0.23        15.72         0.23        42.54         1.28 
TCGA-QH-A6CV TCGA-S9-A6WM TCGA-VM-A8C8 TCGA-WY-A859 TCGA-WY-A85E TCGA-02-0001 
       14.53        19.86        45.93        39.88        20.81        11.77 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0024 TCGA-02-0048 TCGA-02-0051 TCGA-02-0070 
       82.59        20.61        53.10         3.22        15.09        25.05 
TCGA-02-0086 TCGA-02-0115 TCGA-02-0281 TCGA-02-0324 TCGA-06-0159 TCGA-06-0171 
        8.81        15.65         3.98         7.73         9.44        13.12 
TCGA-06-0195 TCGA-06-0216 TCGA-06-0221 TCGA-06-0410 TCGA-06-0743 TCGA-06-1087 
        7.40        24.16        19.82         4.70        26.40         4.04 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0355 TCGA-08-0510 TCGA-08-0525 
       22.68        37.84         4.18        24.56         4.27        15.98 
TCGA-08-0529 TCGA-12-0821 TCGA-12-0826 TCGA-16-0846 TCGA-19-1388 TCGA-28-2514 
       18.41        10.62        27.78         3.91        12.95         5.26 

$`DEL PEAK 19(8Q24.3) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M 
       20.45        18.64        21.40        45.60        42.77        59.38 
TCGA-06-1806 TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
       15.32         3.55         4.54         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 
        2.73         3.75         6.15         4.57         5.23         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
       12.85         4.77         1.55         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
        1.87         3.12         2.56        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       21.73        25.68        14.73         6.77        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       26.93        15.22        10.95        12.69        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
       14.93         3.22        11.97         0.95         6.21        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1395 
       13.78         3.25         2.89        16.50        26.33         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        1.12         3.75        32.05        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.18         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.79         7.63         5.88         7.17        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.78         3.42        17.59        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 
       14.01         9.14        21.24        13.97         6.41         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       14.27         3.39        25.38         3.65         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        3.25         0.13         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 
        4.08        24.23         7.00         7.04         6.64         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 
       16.80        14.96        17.79        28.54        10.03         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        7.13         9.37         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        16.77 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.21         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        2.83         0.13         6.74        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.86        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        25.18        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       19.86        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R 
        0.99         4.44         0.20        15.12        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        1.45        25.58         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        8.22         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       36.20         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       43.89        36.36        60.10        40.18         0.26        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       53.62         6.38        17.69        26.76        37.38        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       46.42        18.84        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K 
       31.40        27.45        27.81        29.23        14.40        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5142 TCGA-DH-5143 
       11.24        17.88        30.74        16.18        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       23.21        17.46        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        7.96         2.40        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        26.76        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 
       51.52        37.38         7.50        44.42        38.89        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK 
       95.57       130.78        29.13        93.21        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       16.18        21.30        75.02        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       16.01        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.38        18.71        14.76        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 
       22.26        10.78        36.66        48.69         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
        3.16        22.06        45.99        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        0.13         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
        5.56        13.78        29.59        34.19        28.27        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       39.75        40.01        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       20.71        19.00        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         9.44         5.88         7.96 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        7.59         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX 
       15.85        14.04        19.33        14.83        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       31.36        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       51.06        13.32        43.96        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-06-0209 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
       37.71         7.63         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       35.41        20.71        87.06        77.65        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 
       10.72        10.52        18.31         6.87        14.73        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        28.70         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 
       27.25        89.72        22.72        12.62        51.32        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        92.65        99.98        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
       12.23         9.90        10.62         7.33        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 
       13.94        10.45         3.19        10.82        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 
       56.91        10.65         5.85        19.66         3.29         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         4.67         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        8.42         7.40        11.84         0.53        15.02         0.72 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       13.64        13.32        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26        72.36         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0344 
       31.50         7.79         5.39       120.56         7.36       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
       65.33         1.28         8.42        17.95        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       22.29         3.39        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       13.97         0.72        12.56        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0531 
       58.68        19.33        10.75         4.80         7.27         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.73        14.93        14.86        91.76        24.79        18.48 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
       14.53         3.98         4.14         2.24        11.24         1.35 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        5.39         2.04        28.93        19.30         0.79        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 
       50.53        19.10        53.19        13.28        26.07        16.37 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       11.77        21.90         0.66        10.75         9.07         5.95 
TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 
        4.64        31.33        14.86         5.49         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        2.33         7.30        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 
       22.68        12.76         5.42         7.36        11.38         5.42 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        3.75         1.61        17.72        26.30 

  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                         0.23                          0.03 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                        82.59                        211.17 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                       14.270                        16.225 
[1] "0.2 - 82.6 (14.3)"  "0.0 - 211.2 (16.2)"
[1] "hr=" "1.5"
D49V2, continuous
D49V3, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED    51  27
  DEL PEAK 19(8Q24.3) WILD-TYPE 522 485
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED     51   27
  DEL PEAK 19(8Q24.3) WILD-TYPE  522  485
                        clus
vv                       DEL PEAK 19(8Q24.3) MUTATED
  BRAIN                                           51
  CENTRAL NERVOUS SYSTEM                          27
                        clus
vv                       DEL PEAK 19(8Q24.3) WILD-TYPE
  BRAIN                                            522
  CENTRAL NERVOUS SYSTEM                           485
[1] 2 2
[1] FALSE
D49V4, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED    37  41
  DEL PEAK 19(8Q24.3) WILD-TYPE 416 591
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED     37   41
  DEL PEAK 19(8Q24.3) WILD-TYPE  416  591
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  FEMALE                          37                           416
  MALE                            41                           591
[1] 2 2
[1] FALSE
D49V5, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED    10  65
  DEL PEAK 19(8Q24.3) WILD-TYPE 248 705
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED     10   65
  DEL PEAK 19(8Q24.3) WILD-TYPE  248  705
     clus
vv    DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  NO                           10                           248
  YES                          65                           705
[1] 2 2
[1] FALSE
D49V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 19(8Q24.3) MUTATED            12                             1
  DEL PEAK 19(8Q24.3) WILD-TYPE         182                            29
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 19(8Q24.3) MUTATED                  9                 6
  DEL PEAK 19(8Q24.3) WILD-TYPE              120               183
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 19(8Q24.3) MUTATED                     2
  DEL PEAK 19(8Q24.3) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 19(8Q24.3) MUTATED                                48
  DEL PEAK 19(8Q24.3) WILD-TYPE                             477
D49V7, multiclass
                                 clus
vv                                DEL PEAK 19(8Q24.3) MUTATED
  ASTROCYTOMA                                              12
  GLIOBLASTOMA MULTIFORME (GBM)                             1
  OLIGOASTROCYTOMA                                          9
  OLIGODENDROGLIOMA                                         6
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          48
                                 clus
vv                                DEL PEAK 19(8Q24.3) WILD-TYPE
  ASTROCYTOMA                                               182
  GLIOBLASTOMA MULTIFORME (GBM)                              29
  OLIGOASTROCYTOMA                                          120
  OLIGODENDROGLIOMA                                         183
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           477
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 19(8Q24.3) MUTATED                                  0     3
  DEL PEAK 19(8Q24.3) WILD-TYPE                                1    18
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 19(8Q24.3) MUTATED                           6    62
  DEL PEAK 19(8Q24.3) WILD-TYPE                        65   897
D49V8, multiclass
                                  clus
vv                                 DEL PEAK 19(8Q24.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      3
  BLACK OR AFRICAN AMERICAN                                  6
  WHITE                                                     62
                                  clus
vv                                 DEL PEAK 19(8Q24.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       18
  BLACK OR AFRICAN AMERICAN                                   65
  WHITE                                                      897
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V9, binary
                               cls
clus                              0   1
  DEL PEAK 19(8Q24.3) MUTATED     3  64
  DEL PEAK 19(8Q24.3) WILD-TYPE  41 857
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8Q24.3) MUTATED      3   64
  DEL PEAK 19(8Q24.3) WILD-TYPE   41  857
                        clus
vv                       DEL PEAK 19(8Q24.3) MUTATED
  HISPANIC OR LATINO                               3
  NOT HISPANIC OR LATINO                          64
                        clus
vv                       DEL PEAK 19(8Q24.3) WILD-TYPE
  HISPANIC OR LATINO                                41
  NOT HISPANIC OR LATINO                           857
[1] 2 2
[1] FALSE

Clustering(50) Variable = DEL PEAK 20(9P21.3) MUTATION ANALYSIS
D50V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 20(9P21.3) MUTATED   173 415
  DEL PEAK 20(9P21.3) WILD-TYPE 307 183
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          588                           490 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          415                           183 
$`DEL PEAK 20(9P21.3) MUTATED`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-E1-A7YN TCGA-FG-A87N 
        1.48         3.98        46.88        46.72        23.90        18.64 
TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 
       45.60        15.32        11.74         3.55         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 
        8.98         8.55         2.73         3.75         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
        8.32        12.85         1.55         4.77         4.96        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 
        1.87         3.12         2.56        17.72        15.35        21.73 
TCGA-12-1599 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       25.68         6.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0862 
       11.97         0.95         6.21        23.05        13.78         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       16.50        26.33         1.38         1.12         3.75        32.05 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
        7.10         1.15         0.92         6.67        12.43         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        7.96         3.42        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
        9.14        21.24        13.97         8.61        14.27         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         3.65         7.17         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        4.87         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 
       22.49        14.07        16.80        28.54        13.87         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.13         9.37        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 
       24.23        40.54        30.05        14.04        16.77        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
        7.59         2.86        15.78         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        7.63         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2506 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        6.74        15.39        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
       19.50         4.67        12.69        16.93        20.78        15.02 
TCGA-32-2615 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       15.95        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85        19.23        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T 
        4.44         0.20        12.46         4.08         1.45        25.58 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.91         4.34        14.33         8.22         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 
       36.85        16.70         3.29        17.06         8.35         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        5.03        23.90        36.20         5.92         6.28        20.55 
TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       36.36        40.18        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6666 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-5281 
       26.76        46.95        47.93        50.86        44.52        78.28 
TCGA-DB-A4XB TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64V TCGA-DB-A75L 
       30.21        33.57        31.63        24.20        29.23        11.24 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-A7UR TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 
       16.18        19.96        54.25        18.02        17.46         6.74 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6402 
        8.45         6.81        49.02        46.06        65.75         7.04 
TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6542 TCGA-DU-7006 
       11.64        19.89        16.83        94.52         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
       62.96         6.54       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       10.36         7.96        18.94        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8168 TCGA-DU-A5TY 
       41.98         5.10        23.74        14.60        14.17        33.96 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T6 TCGA-DU-A7TA 
       20.98        22.29        11.41        26.76        17.98        84.33 
TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-A7YD TCGA-E1-A7YE 
        7.50         0.56        41.13        57.93        14.30        29.13 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YV 
        3.65        19.46        21.30        51.88        15.32        32.45 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-EZ-7264 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       13.08        73.48        39.48         0.20        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-8185 TCGA-FG-A4MU 
       36.82        42.54        18.44        17.88        14.24        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       18.38        18.71        23.70        22.26        28.54        10.78 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7475 
       48.69         5.72        11.54        40.11         0.13        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7606 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
        6.54        24.26        17.29         0.10        31.69        14.96 
TCGA-HT-7692 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7902 TCGA-HT-8011 
        2.96        19.23         0.23         0.49        31.43        16.24 
TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       12.23         2.50         0.23        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A74J TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KK 
        2.70        10.52        39.75        40.01        24.92        12.76 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F2 
       20.71        19.00        14.40         0.23         2.30         7.96 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72Z TCGA-P5-A780 TCGA-QH-A6CV 
        7.59         1.28         0.23        11.64         2.37        14.53 
TCGA-QH-A6CX TCGA-QH-A6CZ TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-RY-A83Z TCGA-S9-A6TS 
       12.23         9.17         1.91        16.70         9.90        62.17 
TCGA-S9-A6TW TCGA-S9-A6U0 TCGA-S9-A6UA TCGA-S9-A6WH TCGA-S9-A6WM TCGA-S9-A7IS 
       41.10        24.39         5.85        38.56        19.86         7.92 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R8 
       26.93        19.99        20.02       169.84        99.06        31.59 
TCGA-S9-A89Z TCGA-TM-A7CF TCGA-TM-A84H TCGA-TM-A84J TCGA-TQ-A7RH TCGA-TQ-A7RP 
       20.48        65.39        30.44        24.16        15.98        30.05 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CF 
       26.99        31.36        45.93         0.10         7.89        20.02 
TCGA-VV-A86M TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85B 
       16.01        51.06        13.32        43.96        39.88        45.80 
TCGA-06-0209 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 
        7.63        23.18        10.59        35.41        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0027 TCGA-02-0037 
       87.06        77.65        20.12        53.10        12.16         3.62 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 
       10.72        18.31        14.73         3.22        15.09         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0064 TCGA-02-0068 TCGA-02-0071 TCGA-02-0080 
       19.86         8.35        19.73        26.43         5.49        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 
       22.72        51.32         8.81        16.96         3.48        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.18        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 
       16.54        16.93        17.72        10.75         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 
       14.20        15.95        12.23         9.90        10.62         7.33 
TCGA-02-0330 TCGA-02-0333 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       15.91         4.37        12.39        14.50        10.55        47.11 
TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 
        9.27        16.21        16.80        12.92        15.32        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 
       22.72        25.35        14.30        26.70        11.90        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
        2.20        11.74         2.33        10.09        19.46        46.59 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
       13.94        10.45        10.82         3.42        56.91         5.85 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 
        3.29        13.12         4.47         4.04         4.18        20.25 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 
       73.84        27.22        44.58        10.42        38.96         0.39 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        8.42         7.40        11.84        15.02        24.16         0.72 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 
       19.82        13.64        48.69        10.82         9.01        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.70         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.80         2.10        23.57        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0882 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.78        23.93         6.84        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-2557 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       13.61         1.08        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-6389 TCGA-06-6693 
       16.64         5.98         4.37         0.43         7.79       120.56 
TCGA-06-6694 TCGA-08-0244 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        7.36        22.68         4.18         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       12.16         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0390 TCGA-08-0392 
       37.58        22.29         3.39        12.23        13.97         0.72 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56         4.27        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0620 TCGA-12-0654 
       10.75        15.98        18.41         7.56        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
       94.78         0.10        25.97        26.66        12.13         3.65 
TCGA-12-0707 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       28.41         7.63        14.93        14.86        91.76        24.79 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
      127.59         5.82        33.21        15.98        12.23        15.85 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
       14.53         3.98         4.14         2.24        11.24         1.35 
TCGA-14-0817 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
        5.39        28.93        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 TCGA-19-0962 
       19.10        53.19        13.28         3.91        11.77         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 
       10.75         9.07         5.95        12.95         4.64        31.33 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        5.49         1.58         2.33         7.30         5.26        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 
       17.88        14.53        11.77        31.27        11.01        13.64 
TCGA-28-5220 TCGA-28-6450 TCGA-76-6280 TCGA-76-6660 TCGA-81-5910 TCGA-87-5896 
       12.76         5.42        11.38         3.75         1.61        26.30 

$`DEL PEAK 20(9P21.3) WILD-TYPE`
TCGA-CS-6665 TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-FG-8187 
       51.55        31.82        42.05        62.01        17.16        20.09 
TCGA-FG-A60K TCGA-FG-A713 TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 
       17.82        20.45        21.40        42.77        59.38         8.35 
TCGA-06-5416 TCGA-06-5858 TCGA-06-6698 TCGA-06-A7TK TCGA-12-1598 TCGA-12-1600 
        6.71         6.15         4.77        14.60        15.65        14.73 
TCGA-12-3644 TCGA-12-3646 TCGA-14-0812 TCGA-14-1034 TCGA-14-1450 TCGA-14-1451 
       59.77        44.02         3.25        15.95        58.78        23.11 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1794 TCGA-14-3477 TCGA-16-0848 TCGA-16-1460 
       30.18        40.96         0.99         3.78        17.59         6.41 
TCGA-19-1787 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-5960 TCGA-19-A60I 
       12.66         1.08         7.53         0.16        14.96        17.79 
TCGA-26-1438 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-27-1835 TCGA-27-1838 
       10.03         9.40         8.88        18.97        21.30        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2527 TCGA-28-1746 TCGA-28-1752 TCGA-28-2509 
       24.76        18.08        14.40         0.20         8.48         4.77 
TCGA-32-1980 TCGA-32-1987 TCGA-32-2491 TCGA-32-2632 TCGA-32-2634 TCGA-41-2571 
        1.18        14.86        12.23         8.84        22.78         0.85 
TCGA-41-3915 TCGA-41-5651 TCGA-76-6193 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 
       11.84        15.12         2.70        20.98        34.45        18.64 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5394 TCGA-CS-6290 
      117.50         7.69        43.89        60.10         0.26        37.38 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       48.30        49.94        49.12       122.73        81.96        75.25 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XD 
       72.92        91.13        36.56        46.42        18.84        39.78 
TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       37.45        72.95        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M 
       27.45        27.81        14.40        18.51        12.10        17.88 
TCGA-DB-A75O TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       30.74        63.88        46.06        24.59        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        17.19        23.21        17.46        13.71        18.61 
TCGA-DU-5849 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
       14.56        13.38       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6400 TCGA-DU-6401 
      211.17        52.11        22.42        75.16         1.22        87.45 
TCGA-DU-6404 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
      133.74       114.08         7.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7309 TCGA-DU-8163 
      105.21         8.84        94.32        44.02         2.76        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        16.96        15.48        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 
       31.69        24.43        26.17        24.99        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG 
       95.11        21.30       139.04        51.52        37.38        44.42 
TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 
       38.89        50.14        67.46        79.99       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YH TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YO 
       95.57       130.78        93.21        12.43        16.18        75.02 
TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O3 
        0.76        36.82       146.14       145.05        32.35         0.23 
TCGA-FG-5962 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7638 
       47.77        18.77        14.93        41.33        15.35        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8188 
       20.61        20.09        28.34        13.68        16.01        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       22.52        32.61        38.27        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A710 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7472 
       16.44        36.66        27.52         0.10         6.67         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       16.54         3.75         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
      122.47         4.57         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 
       44.68         6.05        42.74         0.10         0.10        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 
        6.90        14.53        39.48        39.09        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
        3.72        11.28         1.64         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 
       37.87        33.01         6.25         0.10         0.46         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HT-A616 
       26.04         0.13        20.22         0.07        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K 
       16.14        16.83        17.52        17.65         2.43        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8321 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-KT-A74X 
       69.27        35.44        42.54        31.63        28.87        14.40 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A72W 
        6.71         7.99         2.37         9.44         5.88        10.42 
TCGA-P5-A72X TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       13.25        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       12.23        19.20         3.45         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW 
       12.62        15.85        14.04        19.33        14.83        13.61 
TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA 
       13.41        10.29        14.53        16.34        16.73        16.50 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        5.46        28.08         2.07        19.59        30.67        87.12 
TCGA-S9-A6TV TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       18.77        40.93        35.38        36.82        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD 
       32.61        35.15        98.24        95.93       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO 
      135.22        85.55        84.99        31.10        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 
       18.64        14.07        36.13        23.51         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R2 
       20.68        15.06        18.54        28.37        27.16        10.39 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       30.05        98.63        18.71        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I 
       34.78        24.92        16.18        59.05        40.64        28.08 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        21.37        19.69         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       36.69        33.73        31.20        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       61.41        43.20        13.51        39.16        23.47        37.05 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       23.21         8.05        43.40        46.88        37.71        20.81 
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0011 TCGA-02-0025 TCGA-02-0026 
       11.77         4.73        18.35        20.71        42.74        24.59 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0052 
       90.58         2.83        14.14        10.52         6.87        12.59 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 
        2.50         9.57         6.02        28.70        25.05        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0084 TCGA-02-0087 TCGA-02-0102 TCGA-02-0113 
       20.84        27.25        12.62        57.76        27.02        92.65 
TCGA-02-0271 TCGA-02-0324 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0440 
       14.47         7.73        25.71        25.12        10.59        11.34 
TCGA-02-0456 TCGA-02-2485 TCGA-06-0129 TCGA-06-0130 TCGA-06-0138 TCGA-06-0140 
        3.35        15.45        33.67        12.95        24.23         0.20 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0157 TCGA-06-0159 
       20.09        17.79         8.61        12.33         3.19         9.44 
TCGA-06-0160 TCGA-06-0165 TCGA-06-0168 TCGA-06-0174 TCGA-06-0176 TCGA-06-0178 
       11.80        10.65        19.66         3.22        91.00        88.14 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
        3.65        69.90        15.42         4.67         7.40         5.56 
TCGA-06-0206 TCGA-06-0213 TCGA-06-0238 TCGA-06-0240 TCGA-06-0402 TCGA-06-0414 
        7.66         0.53        13.32        20.42         0.26        35.11 
TCGA-06-0686 TCGA-06-0749 TCGA-06-0881 TCGA-06-0939 TCGA-06-1087 TCGA-06-1805 
       14.20         2.70        16.57        26.76         4.04        33.90 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2570 TCGA-06-6390 TCGA-08-0245 TCGA-08-0344 
       12.49         4.93        31.50         5.39        37.84       115.86 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
        9.80        29.23        65.33        14.93        18.02        15.35 
TCGA-08-0512 TCGA-08-0521 TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       42.15         4.80         7.27        14.73        12.99        34.92 
TCGA-12-0662 TCGA-12-0703 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0776 
       38.17        20.38        15.06        53.85        43.23         9.73 
TCGA-12-0820 TCGA-12-1090 TCGA-12-1096 TCGA-14-0867 TCGA-16-0849 TCGA-16-0850 
       18.48         7.59         9.11         2.04        26.07        16.37 
TCGA-19-0957 TCGA-26-5133 TCGA-26-6173 TCGA-28-5207 TCGA-28-5214 TCGA-28-5218 
       21.90        14.86         7.92        11.28        23.44         5.16 
TCGA-28-5219 TCGA-32-2616 TCGA-76-6283 TCGA-81-5911 
       22.68         7.36         5.42        17.72 

  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                       169.84                        211.17 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                       13.825                        19.265 
[1] "0.1 - 169.8 (13.8)" "0.0 - 211.2 (19.3)"
[1] "hr=" "2.9"
D50V2, continuous
D50V3, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED   418 174
  DEL PEAK 20(9P21.3) WILD-TYPE 155 338
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED    418  174
  DEL PEAK 20(9P21.3) WILD-TYPE  155  338
                        clus
vv                       DEL PEAK 20(9P21.3) MUTATED
  BRAIN                                          418
  CENTRAL NERVOUS SYSTEM                         174
                        clus
vv                       DEL PEAK 20(9P21.3) WILD-TYPE
  BRAIN                                            155
  CENTRAL NERVOUS SYSTEM                           338
[1] 2 2
[1] FALSE
D50V4, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED   254 338
  DEL PEAK 20(9P21.3) WILD-TYPE 199 294
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED    254  338
  DEL PEAK 20(9P21.3) WILD-TYPE  199  294
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  FEMALE                         254                           199
  MALE                           338                           294
[1] 2 2
[1] FALSE
D50V5, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED    96 460
  DEL PEAK 20(9P21.3) WILD-TYPE 162 310
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED     96  460
  DEL PEAK 20(9P21.3) WILD-TYPE  162  310
     clus
vv    DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  NO                           96                           162
  YES                         460                           310
[1] 2 2
[1] FALSE
D50V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 20(9P21.3) MUTATED            85                            22
  DEL PEAK 20(9P21.3) WILD-TYPE         109                             8
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 20(9P21.3) MUTATED                 36                53
  DEL PEAK 20(9P21.3) WILD-TYPE               93               136
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 20(9P21.3) MUTATED                    15
  DEL PEAK 20(9P21.3) WILD-TYPE                   3
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 20(9P21.3) MUTATED                               381
  DEL PEAK 20(9P21.3) WILD-TYPE                             144
D50V7, multiclass
                                 clus
vv                                DEL PEAK 20(9P21.3) MUTATED
  ASTROCYTOMA                                              85
  GLIOBLASTOMA MULTIFORME (GBM)                            22
  OLIGOASTROCYTOMA                                         36
  OLIGODENDROGLIOMA                                        53
  TREATED PRIMARY GBM                                      15
  UNTREATED PRIMARY (DE NOVO) GBM                         381
                                 clus
vv                                DEL PEAK 20(9P21.3) WILD-TYPE
  ASTROCYTOMA                                               109
  GLIOBLASTOMA MULTIFORME (GBM)                               8
  OLIGOASTROCYTOMA                                           93
  OLIGODENDROGLIOMA                                         136
  TREATED PRIMARY GBM                                         3
  UNTREATED PRIMARY (DE NOVO) GBM                           144
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 20(9P21.3) MUTATED                                  0    12
  DEL PEAK 20(9P21.3) WILD-TYPE                                1     9
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 20(9P21.3) MUTATED                          50   511
  DEL PEAK 20(9P21.3) WILD-TYPE                        21   448
D50V8, multiclass
                                  clus
vv                                 DEL PEAK 20(9P21.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                     12
  BLACK OR AFRICAN AMERICAN                                 50
  WHITE                                                    511
                                  clus
vv                                 DEL PEAK 20(9P21.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                        9
  BLACK OR AFRICAN AMERICAN                                   21
  WHITE                                                      448
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V9, binary
                               cls
clus                              0   1
  DEL PEAK 20(9P21.3) MUTATED    17 494
  DEL PEAK 20(9P21.3) WILD-TYPE  27 427
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) MUTATED     17  494
  DEL PEAK 20(9P21.3) WILD-TYPE   27  427
                        clus
vv                       DEL PEAK 20(9P21.3) MUTATED
  HISPANIC OR LATINO                              17
  NOT HISPANIC OR LATINO                         494
                        clus
vv                       DEL PEAK 20(9P21.3) WILD-TYPE
  HISPANIC OR LATINO                                27
  NOT HISPANIC OR LATINO                           427
[1] 2 2
[1] FALSE

Clustering(51) Variable = DEL PEAK 21(10P15.3) MUTATION ANALYSIS
D51V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 21(10P15.3) MUTATED   107 440
  DEL PEAK 21(10P15.3) WILD-TYPE 373 158
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           547                            531 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           440                            158 
$`DEL PEAK 21(10P15.3) MUTATED`
TCGA-19-A6J4 TCGA-E1-A7YN TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        3.98        23.90        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 
        8.81         8.98         8.55         2.73         3.75         4.57 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.23         8.32        12.85         4.77         1.55         4.77 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1598 
       26.79         1.87         2.56        14.60        15.35        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       23.05        13.78         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       15.95         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 
        7.10         1.15        30.18         0.92        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.97        17.79        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       17.49         7.96        17.59        29.03         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0963 TCGA-19-0964 
       14.01         9.14        21.24        13.97        14.27         3.39 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.65         7.17         3.25         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       22.49        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       13.87         9.73         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       21.30        30.05        14.04        24.76        18.08        16.08 
TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        7.59        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1757 TCGA-28-2502 
        8.35         7.63         8.48         1.22         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        6.74         4.77        15.39         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 
       19.50         1.18         4.67        12.69        14.86        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 
       20.78        15.02        15.95        22.78        25.18         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       12.46         4.08         1.45        25.58         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.34        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.17         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-OX-A56R TCGA-RR-A6KA 
        5.03        23.90        34.45        18.64         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       20.55         7.69        21.01         6.38        17.69        26.76 
TCGA-DB-5279 TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-5847 
       44.52        24.20        25.48        19.96        30.21        18.02 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 
        6.74         8.45         7.04        11.64        19.89        16.83 
TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 
       11.47         6.54         8.84        10.36         7.96        18.94 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L 
        5.10        23.74        19.13        33.96        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5311 TCGA-E1-A7YD TCGA-E1-A7YJ 
       21.30         7.50         0.56       134.27        14.30        19.46 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 
       16.18        21.30        51.88        18.77        18.44        20.09 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7471 TCGA-HT-7477 
       10.72        18.38        10.78         5.72         0.13        24.26 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8110 
        0.23         0.49         3.72        16.24        12.23        13.78 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HT-A61C 
       15.72         0.23        27.35         5.33        16.14        17.65 
TCGA-HT-A74H TCGA-HW-A5KK TCGA-KT-A7W1 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-QH-A6CS 
        2.43        12.76        14.40         7.59         0.23        19.33 
TCGA-QH-A6CV TCGA-QH-A6XC TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6UA TCGA-S9-A6WM 
       14.53        16.70         9.90        62.17         5.85        19.86 
TCGA-S9-A7IX TCGA-S9-A7R2 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I 
       26.93        10.39        18.71        54.77        24.92        28.08 
TCGA-TM-A84J TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-VM-A8CD TCGA-VW-A8FI TCGA-06-0209 
       24.16        36.69        30.05         7.89         8.05         7.63 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
        4.73        18.35        10.59        87.06        77.65        20.12 
TCGA-02-0024 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       53.10        12.16         2.83        14.14         3.62        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       10.52        18.31         6.87         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 
        6.54         2.50        19.86         9.57        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0084 
       25.05         5.49        10.19        20.84        27.25        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
       51.32         8.81        16.96         3.48        27.02        11.67 
TCGA-02-0107 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 
       17.65        92.65        15.65        48.95        16.93        10.75 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.73        10.62        15.91        25.71         4.37        25.12 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.27        16.21         3.35 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       20.38         6.94        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 
       24.23        11.90         0.20        10.29        11.74         2.33 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0155 
       17.79         8.61        19.46        46.59        12.33        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
        3.19        10.82         9.44         3.42        56.91         5.85 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
        4.18        20.25        69.90        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       15.42        10.42        38.96         4.67         7.40         5.56 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 
        0.39         7.66         8.42         7.40        11.84        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       24.16         0.72        19.82        13.64        13.32        48.69 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0644 
       10.82         0.26        72.36         4.70        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       26.76        23.93         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       13.61         1.08        12.49        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-6390 TCGA-06-6693 
        5.95        16.64         5.98         4.37         5.39       120.56 
TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
        7.36        22.68        37.84         4.18         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       25.71        12.16         9.80         1.28         8.42        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 
       14.93        18.02        15.35        13.97        12.56         4.27 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0520 TCGA-08-0521 TCGA-08-0529 TCGA-12-0616 
       42.15        11.08        10.75         4.80        18.41        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       12.99        34.92        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        15.06        53.85         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1091 TCGA-12-1093 
       27.78        38.76         8.94        20.58        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 
       12.23        15.85         9.11        14.53         3.98         2.24 
TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 
       11.24         1.35         5.39         2.04        28.93        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 
        0.79        13.78        19.10        13.28         3.91        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       21.90         0.66        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 
        4.64        14.86         5.49         1.58         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01        13.64        22.68        12.76 
TCGA-28-6450 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        5.42        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

$`DEL PEAK 21(10P15.3) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       62.01        17.16        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5416 
       21.40        45.60        42.77        59.38        15.32         6.71 
TCGA-06-5858 TCGA-06-6701 TCGA-06-A6S0 TCGA-06-A7TL TCGA-12-1092 TCGA-14-1396 
        6.15         4.96         3.12        17.72        21.73         1.12 
TCGA-14-1456 TCGA-14-1458 TCGA-14-3477 TCGA-14-4157 TCGA-16-1460 TCGA-19-0960 
       40.96         6.67         3.78         3.42         6.41         8.61 
TCGA-19-1390 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-5958 TCGA-26-1443 
       25.38        12.66         0.13         9.67        14.07         7.13 
TCGA-27-1838 TCGA-27-2521 TCGA-27-2526 TCGA-28-1755 TCGA-28-1756 TCGA-32-1973 
       11.51        16.77         2.86         1.55         2.83        21.07 
TCGA-32-1991 TCGA-32-2632 TCGA-32-4208 TCGA-41-5651 TCGA-76-6664 TCGA-CS-4938 
       16.93         8.84        21.14        15.12        36.20       117.50 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 
       43.89        36.36        60.10        40.18         0.26        53.62 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       37.38        46.95        48.30        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       36.56        78.28        46.42        18.84        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q 
       37.45        33.57        72.95        31.63        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5142 
       12.10        11.24        17.88        30.74        16.18        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       46.06        24.59        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 
       23.21        17.46        13.71        18.61        14.56        17.46 
TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
       13.38         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6404 TCGA-DU-6407 TCGA-DU-6408 
       65.75         1.22        87.45       133.74        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        7.96         2.40        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 
      105.21       117.40        90.77        30.67        26.30        94.32 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       44.02        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A7T6 
       25.55        21.57        95.11        20.98        22.29        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TI 
      139.04        84.33        51.52        37.38        44.42        38.89 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 
       50.14        67.46        41.13        79.99        57.93        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK 
       95.57       130.78        29.13        93.21         3.65        12.43 
TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       75.02        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 
        0.20        47.77        25.48        52.21        36.82        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       42.54        41.33        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       32.61        38.27        18.71        23.70        14.76        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        22.26        28.54        36.66        48.69 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 
       27.52         0.10         6.67        11.54        40.11         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75        17.42         6.54         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 
        5.33        35.47        11.28        31.43         1.64         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       63.55         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.46         2.50         5.56         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RB 
       28.27        26.04         0.13        20.22         0.07         0.10 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74J 
        2.70        16.93         1.81        16.83        17.52        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       68.32        69.27        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       24.92        31.63        28.87        20.71        19.00        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        5.88         7.96         1.28        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX 
       12.62        15.85        14.04        14.83        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
        1.91        16.50        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       32.65        30.87         5.46        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        87.12        18.77        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       14.07        36.13         7.92        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       27.16       169.84        99.06        30.05        98.63        31.59 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       20.48        48.33        49.32        34.78        65.39        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       59.05        40.64        30.44        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO 
       15.98         2.04        40.41        44.09        33.73        31.20 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF 
       45.93        43.20        13.51         0.10        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K 
       23.47        37.05        16.01        23.21        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
       20.81        11.77        23.18        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 TCGA-02-0047 TCGA-02-0058 
       20.61        42.74        24.59        90.58        14.73         8.35 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 TCGA-02-0083 TCGA-02-0087 TCGA-02-0104 
        6.02        28.70        89.72        22.72        57.76        65.00 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 
       23.18        99.98        16.54        17.72        14.47         7.33 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 TCGA-06-0125 TCGA-06-0127 
       10.59        12.39        47.11        12.92        47.61         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0148 TCGA-06-0154 
       22.72        33.67         2.20        20.09        10.09        13.94 
TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0182 TCGA-06-0213 
       11.80        10.65        91.00        88.14         3.65         0.53 
TCGA-06-0240 TCGA-06-0397 TCGA-06-0412 TCGA-06-0413 TCGA-06-1086 TCGA-06-1805 
       20.42         9.01         9.57         3.16         6.84        33.90 
TCGA-06-2559 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-08-0344 TCGA-08-0350 
        4.93         0.43        31.50         7.79       115.86        29.23 
TCGA-08-0351 TCGA-08-0392 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0524 
       65.33         0.72        19.59        58.68        19.33         7.27 
TCGA-08-0525 TCGA-08-0531 TCGA-12-0773 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       15.98         7.56        43.23       127.59         5.82         7.59 
TCGA-12-1099 TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-26-1442 
        4.14        50.53        53.19        26.07        16.37        31.33 
TCGA-26-6173 TCGA-28-5218 TCGA-32-2616 
        7.92         5.16         7.36 

  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                        134.27                         211.17 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                         12.43                          22.52 
[1] "0.1 - 134.3 (12.4)" "0.0 - 211.2 (22.5)"
[1] "hr=" "6"  
D51V2, continuous
D51V3, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED   466  83
  DEL PEAK 21(10P15.3) WILD-TYPE 107 429
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED    466   83
  DEL PEAK 21(10P15.3) WILD-TYPE  107  429
                        clus
vv                       DEL PEAK 21(10P15.3) MUTATED
  BRAIN                                           466
  CENTRAL NERVOUS SYSTEM                           83
                        clus
vv                       DEL PEAK 21(10P15.3) WILD-TYPE
  BRAIN                                             107
  CENTRAL NERVOUS SYSTEM                            429
[1] 2 2
[1] FALSE
D51V4, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED   214 335
  DEL PEAK 21(10P15.3) WILD-TYPE 239 297
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED    214  335
  DEL PEAK 21(10P15.3) WILD-TYPE  239  297
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  FEMALE                          214                            239
  MALE                            335                            297
[1] 2 2
[1] FALSE
D51V5, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED    75 445
  DEL PEAK 21(10P15.3) WILD-TYPE 183 325
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED     75  445
  DEL PEAK 21(10P15.3) WILD-TYPE  183  325
     clus
vv    DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  NO                            75                            183
  YES                          445                            325
[1] 2 2
[1] FALSE
D51V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 21(10P15.3) MUTATED            50                            22
  DEL PEAK 21(10P15.3) WILD-TYPE         144                             8
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 21(10P15.3) MUTATED                 15                18
  DEL PEAK 21(10P15.3) WILD-TYPE              114               171
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 21(10P15.3) MUTATED                    11
  DEL PEAK 21(10P15.3) WILD-TYPE                   7
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 21(10P15.3) MUTATED                               433
  DEL PEAK 21(10P15.3) WILD-TYPE                              92
D51V7, multiclass
                                 clus
vv                                DEL PEAK 21(10P15.3) MUTATED
  ASTROCYTOMA                                               50
  GLIOBLASTOMA MULTIFORME (GBM)                             22
  OLIGOASTROCYTOMA                                          15
  OLIGODENDROGLIOMA                                         18
  TREATED PRIMARY GBM                                       11
  UNTREATED PRIMARY (DE NOVO) GBM                          433
                                 clus
vv                                DEL PEAK 21(10P15.3) WILD-TYPE
  ASTROCYTOMA                                                144
  GLIOBLASTOMA MULTIFORME (GBM)                                8
  OLIGOASTROCYTOMA                                           114
  OLIGODENDROGLIOMA                                          171
  TREATED PRIMARY GBM                                          7
  UNTREATED PRIMARY (DE NOVO) GBM                             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 21(10P15.3) MUTATED                                  1     9
  DEL PEAK 21(10P15.3) WILD-TYPE                                0    12
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 21(10P15.3) MUTATED                          48   470
  DEL PEAK 21(10P15.3) WILD-TYPE                        23   489
D51V8, multiclass
                                  clus
vv                                 DEL PEAK 21(10P15.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       9
  BLACK OR AFRICAN AMERICAN                                  48
  WHITE                                                     470
                                  clus
vv                                 DEL PEAK 21(10P15.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        12
  BLACK OR AFRICAN AMERICAN                                    23
  WHITE                                                       489
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V9, binary
                                cls
clus                               0   1
  DEL PEAK 21(10P15.3) MUTATED    12 455
  DEL PEAK 21(10P15.3) WILD-TYPE  32 466
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10P15.3) MUTATED     12  455
  DEL PEAK 21(10P15.3) WILD-TYPE   32  466
                        clus
vv                       DEL PEAK 21(10P15.3) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          455
                        clus
vv                       DEL PEAK 21(10P15.3) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            466
[1] 2 2
[1] FALSE

Clustering(52) Variable = DEL PEAK 22(10P13) MUTATION ANALYSIS
D52V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 22(10P13) MUTATED   104 443
  DEL PEAK 22(10P13) WILD-TYPE 376 155
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         547                          531 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         443                          155 
$`DEL PEAK 22(10P13) MUTATED`
TCGA-19-A6J4 TCGA-E1-A7YN TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        3.98        23.90        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 
        8.81         8.98         8.55         2.73         3.75         4.57 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.23         8.32        12.85         4.77         1.55         4.77 
TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1598 TCGA-12-1599 
        1.87         2.56        14.60        15.35        15.65        25.68 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       14.73         6.77        59.77        44.02        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        12.69        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.04        15.12        11.97         0.95         6.21        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 
       13.78         3.25         2.89        16.50        26.33        15.95 
TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.38         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        1.15        30.18         0.92        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.79        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        7.96        17.59        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 
        9.14        21.24        13.97        14.27         3.39         3.65 
TCGA-19-1786 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        7.17         3.25         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       16.80        14.96        17.79        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        9.73         9.37         9.40         8.88        18.97        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       14.04        24.76        18.08        16.77        16.08         7.59 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        7.63         8.48         1.22         0.13         0.66         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
        4.77        15.39         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        14.86        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       15.95        22.78        25.18         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9R 
        0.99         4.44        11.84         0.20        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        1.45        25.58         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.50         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4941 
       34.45        18.64         5.92         6.28        20.55         7.69 
TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5279 TCGA-DB-A64L 
       21.01         6.38        17.69        26.76        44.52        24.20 
TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 
       25.48        19.96        30.21        18.02         6.74         8.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7012 
        7.04        11.64        19.89        16.83        11.47         6.54 
TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 
        8.84        10.36         7.96        18.94         5.10        23.74 
TCGA-DU-8165 TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7TD 
       19.13        33.96        11.41        26.76        21.30         7.50 
TCGA-DU-A7TJ TCGA-E1-5311 TCGA-E1-A7YD TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM 
        0.56       134.27        14.30        19.46        16.18        21.30 
TCGA-E1-A7YQ TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-A4MU TCGA-FG-A4MW 
       51.88        18.77        18.44        20.09        10.72        18.38 
TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7471 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 
       10.78         5.72         0.13         0.23         0.49         3.72 
TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RA 
       16.24        12.23        13.78        15.72         0.23        27.35 
TCGA-HT-A5RC TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HW-A5KK TCGA-KT-A7W1 
        5.33        16.14        17.65         2.43        12.76        14.40 
TCGA-P5-A72U TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6XC TCGA-RY-A83Z TCGA-S9-A6TS 
        0.23        19.33        14.53        16.70         9.90        62.17 
TCGA-S9-A6U0 TCGA-S9-A6UA TCGA-S9-A6WM TCGA-S9-A7IX TCGA-S9-A7R2 TCGA-S9-A89V 
       24.39         5.85        19.86        26.93        10.39        18.71 
TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RM TCGA-TQ-A7RP 
       54.77        24.92        28.08        24.16        36.69        30.05 
TCGA-VM-A8CD TCGA-VW-A8FI TCGA-06-0209 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 
        7.89         8.05         7.63         4.73        18.35        10.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16         2.83        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       18.31         6.87         3.22        15.09        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        2.50        19.86         9.57        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0084 TCGA-02-0085 
        5.49        10.19        20.84        27.25        12.62        51.32 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 
        8.81        16.96         3.48        27.02        11.67        17.65 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 
       92.65        15.65        48.95        16.93        10.75         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.90         7.73 
TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 
       10.62        15.91        25.71         4.37        25.12        14.50 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       10.55        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        6.94        22.72        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 
       24.23        11.90         0.20        10.29        11.74         2.33 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       17.79         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 
       10.45         3.19        10.82         9.44         3.42        56.91 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.85        19.66         3.29        13.12         4.47         3.22 
TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        4.04         4.18        20.25        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       15.02        24.16         0.72        19.82        13.64        13.32 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       48.69        10.82         0.26        72.36         4.70         9.57 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
       16.57        20.78        26.76        23.93         4.04        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 
       11.84        15.32        13.61         1.08        12.49        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        5.39       120.56         7.36        22.68        37.84         4.18 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 
        1.74         8.42        25.71        12.16         9.80         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0520 TCGA-08-0521 
       12.56         4.27        42.15        11.08        10.75         4.80 
TCGA-08-0529 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       18.41        14.73        12.99        34.92        10.45         7.59 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       94.78         0.10        38.17        25.97        26.66        12.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        3.65        20.38        28.41        15.06        53.85         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.73        14.93        14.86        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1091 
       23.51        27.78        38.76         8.94        20.58        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 
        2.24        11.24         1.35         5.39         2.04        28.93 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-19-0955 
       19.30         0.79        13.78        19.10        13.28        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       21.90         0.66        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 
        4.64        14.86         5.49         1.58         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01        13.64        22.68        12.76 
TCGA-28-6450 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        5.42        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

$`DEL PEAK 22(10P13) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       62.01        17.16        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5416 
       21.40        45.60        42.77        59.38        15.32         6.71 
TCGA-06-5858 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TL TCGA-12-1092 
        6.15         4.96        26.79         3.12        17.72        21.73 
TCGA-14-1396 TCGA-14-1456 TCGA-14-1458 TCGA-14-3477 TCGA-14-4157 TCGA-16-1460 
        1.12        40.96         6.67         3.78         3.42         6.41 
TCGA-19-0960 TCGA-19-1390 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-5958 
        8.61        25.38        12.66         0.13         9.67        14.07 
TCGA-26-1443 TCGA-27-1836 TCGA-27-1838 TCGA-27-2526 TCGA-28-1755 TCGA-28-1756 
        7.13        30.05        11.51         2.86         1.55         2.83 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1991 TCGA-32-2632 TCGA-32-4208 TCGA-41-5651 
       21.07         0.49        16.93         8.84        21.14        15.12 
TCGA-76-6664 TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
       36.20       117.50        43.89        36.36        60.10        40.18 
TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
        0.26        53.62        37.38        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.86        91.13        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F 
       16.18        63.88        46.06        24.59        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       14.56        17.46        13.38         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6404 
       75.16        46.06        65.75         1.22        87.45       133.74 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 
       94.52       114.08         7.96         2.40        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      154.36        14.99       105.21       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       26.30        94.32        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
       41.98         2.76        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       26.17        24.99        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       22.29        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42        38.89        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH 
       57.93        78.21        95.57       130.78        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
        3.65        12.43        75.02        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       36.82        14.93        42.54        41.33        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       22.55        20.61        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY 
       14.96        22.52        32.61        38.27        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       36.66        48.69        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 
       39.48        19.23        39.09        50.63        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
        0.33         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       31.43         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 
        0.23        29.59        34.19        28.27        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       20.22         0.07         0.10         2.70        16.93         1.81 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       16.83        17.52        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL 
       39.75        40.01        42.54        24.92        31.63        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       20.71        19.00        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         9.44         5.88         7.96         7.59 
TCGA-P5-A5F6 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        1.28        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.04        14.83        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        5.46        28.08         2.07        19.59        30.67        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 
       18.77        41.10        40.93        35.38        36.82        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB 
       29.85        32.61        35.15        98.24        95.93       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 
       15.06        18.54        28.37        27.16       169.84        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 
       30.05        98.63        31.59        20.48        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       34.78        65.39        16.18        59.05        40.64        30.44 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       44.09        33.73        31.20        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       23.21        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-02-0001 TCGA-02-0007 
       45.80        46.88        37.71        20.81        11.77        23.18 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0026 TCGA-02-0028 TCGA-02-0047 
       35.41        20.71        82.59        24.59        90.58        14.73 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 TCGA-02-0083 TCGA-02-0087 
        8.35         6.02        28.70        89.72        22.72        57.76 
TCGA-02-0104 TCGA-02-0111 TCGA-02-0114 TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 
       65.00        23.18        99.98        16.54        17.72        14.47 
TCGA-02-0326 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 TCGA-06-0125 
        7.33        10.59        12.39        47.11        12.92        47.61 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0148 TCGA-06-0160 
        3.98        33.67         2.20        20.09        10.09        11.80 
TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0182 TCGA-06-0213 TCGA-06-0240 
       10.65        91.00        88.14         3.65         0.53        20.42 
TCGA-06-0397 TCGA-06-0413 TCGA-06-1086 TCGA-06-1805 TCGA-06-2559 TCGA-06-2569 
        9.01         3.16         6.84        33.90         4.93         0.43 
TCGA-06-2570 TCGA-06-6389 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0392 
       31.50         7.79       115.86        29.23        65.33         0.72 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0524 TCGA-08-0525 TCGA-08-0531 
       19.59        58.68        19.33         7.27        15.98         7.56 
TCGA-12-0773 TCGA-12-0818 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1099 
       43.23        91.76       127.59         5.82         7.59         4.14 
TCGA-15-1444 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-26-1442 
       50.53        53.19         3.91        26.07        16.37        31.33 
TCGA-26-6173 TCGA-28-5218 TCGA-32-2616 
        7.92         5.16         7.36 

  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                      134.27                       211.17 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                       12.49                        22.55 
[1] "0.1 - 134.3 (12.5)" "0.0 - 211.2 (22.6)"
[1] "hr=" "6.2"
D52V2, continuous
D52V3, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED   467  82
  DEL PEAK 22(10P13) WILD-TYPE 106 430
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED    467   82
  DEL PEAK 22(10P13) WILD-TYPE  106  430
                        clus
vv                       DEL PEAK 22(10P13) MUTATED
  BRAIN                                         467
  CENTRAL NERVOUS SYSTEM                         82
                        clus
vv                       DEL PEAK 22(10P13) WILD-TYPE
  BRAIN                                           106
  CENTRAL NERVOUS SYSTEM                          430
[1] 2 2
[1] FALSE
D52V4, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED   211 338
  DEL PEAK 22(10P13) WILD-TYPE 242 294
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED    211  338
  DEL PEAK 22(10P13) WILD-TYPE  242  294
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  FEMALE                        211                          242
  MALE                          338                          294
[1] 2 2
[1] FALSE
D52V5, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED    73 447
  DEL PEAK 22(10P13) WILD-TYPE 185 323
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED     73  447
  DEL PEAK 22(10P13) WILD-TYPE  185  323
     clus
vv    DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  NO                          73                          185
  YES                        447                          323
[1] 2 2
[1] FALSE
D52V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 22(10P13) MUTATED            50                            21
  DEL PEAK 22(10P13) WILD-TYPE         144                             9
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 22(10P13) MUTATED                 15                17
  DEL PEAK 22(10P13) WILD-TYPE              114               172
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 22(10P13) MUTATED                    11
  DEL PEAK 22(10P13) WILD-TYPE                   7
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 22(10P13) MUTATED                               435
  DEL PEAK 22(10P13) WILD-TYPE                              90
D52V7, multiclass
                                 clus
vv                                DEL PEAK 22(10P13) MUTATED
  ASTROCYTOMA                                             50
  GLIOBLASTOMA MULTIFORME (GBM)                           21
  OLIGOASTROCYTOMA                                        15
  OLIGODENDROGLIOMA                                       17
  TREATED PRIMARY GBM                                     11
  UNTREATED PRIMARY (DE NOVO) GBM                        435
                                 clus
vv                                DEL PEAK 22(10P13) WILD-TYPE
  ASTROCYTOMA                                              144
  GLIOBLASTOMA MULTIFORME (GBM)                              9
  OLIGOASTROCYTOMA                                         114
  OLIGODENDROGLIOMA                                        172
  TREATED PRIMARY GBM                                        7
  UNTREATED PRIMARY (DE NOVO) GBM                           90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 22(10P13) MUTATED                                  1     9
  DEL PEAK 22(10P13) WILD-TYPE                                0    12
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 22(10P13) MUTATED                          47   471
  DEL PEAK 22(10P13) WILD-TYPE                        24   488
D52V8, multiclass
                                  clus
vv                                 DEL PEAK 22(10P13) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                     9
  BLACK OR AFRICAN AMERICAN                                47
  WHITE                                                   471
                                  clus
vv                                 DEL PEAK 22(10P13) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      12
  BLACK OR AFRICAN AMERICAN                                  24
  WHITE                                                     488
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V9, binary
                              cls
clus                             0   1
  DEL PEAK 22(10P13) MUTATED    12 455
  DEL PEAK 22(10P13) WILD-TYPE  32 466
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(10P13) MUTATED     12  455
  DEL PEAK 22(10P13) WILD-TYPE   32  466
                        clus
vv                       DEL PEAK 22(10P13) MUTATED
  HISPANIC OR LATINO                             12
  NOT HISPANIC OR LATINO                        455
                        clus
vv                       DEL PEAK 22(10P13) WILD-TYPE
  HISPANIC OR LATINO                               32
  NOT HISPANIC OR LATINO                          466
[1] 2 2
[1] FALSE

Clustering(53) Variable = DEL PEAK 23(10Q23.31) MUTATION ANALYSIS
D53V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 23(10Q23.31) MUTATED   133 488
  DEL PEAK 23(10Q23.31) WILD-TYPE 347 110
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                            621                             457 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                            488                             110 
$`DEL PEAK 23(10Q23.31) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-E1-A7YN TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        3.98        51.55        23.90        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         8.55         2.73         3.75 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        4.57         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK 
        4.77        26.79         1.87         3.12         2.56        14.60 
TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       17.72        15.35        21.73        15.65        25.68        14.73 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.77        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       12.69        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 
       15.12        11.97         0.95         6.21        23.05        13.78 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
        3.25         2.89        16.50        26.33        15.95         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 
       30.18         0.92        12.43         0.99         1.97        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       17.59        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 
       21.24        13.97         8.61        14.27         3.39         3.65 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.17         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        24.23         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 
        1.78        22.49        16.80        14.96        17.79        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        16.77        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 
        7.63         8.48         1.22         1.55         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        6.74         4.77        15.39        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.17         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 
        2.70        17.06         8.35        20.98         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-5277 
        7.69        21.01         6.38        17.69        26.76        50.86 
TCGA-DB-5279 TCGA-DB-A4XF TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A75L TCGA-DH-5140 
       44.52        33.57        24.20        25.48        11.24        19.96 
TCGA-DH-A669 TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6396 
       30.21        13.71        18.02         6.74         8.45        75.16 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 
       65.75        87.45         7.04        11.64        19.89        16.83 
TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
       11.47       156.23        14.99         6.54         8.84       117.40 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 
       10.36         7.96        18.94         5.10        23.74        19.13 
TCGA-DU-8167 TCGA-DU-A5TY TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7TD 
       15.48        33.96        11.41        26.76        21.30         7.50 
TCGA-DU-A7TJ TCGA-E1-5311 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YI TCGA-E1-A7YJ 
        0.56       134.27        14.30        29.13         3.65        19.46 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7YV TCGA-E1-A7Z2 TCGA-FG-6688 
       16.18        21.30        51.88        32.45        13.08        18.77 
TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A6J3 TCGA-FG-A70Z 
       18.44        20.09        10.72        18.38        22.26        10.78 
TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7476 TCGA-HT-7606 TCGA-HT-7857 
        5.72        11.54         0.13         6.54        17.29         0.23 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 
        0.49         3.72        16.24        12.23         2.50        13.78 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 
       15.72         0.23        20.22        27.35         5.33        16.14 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HW-8321 TCGA-HW-A5KK TCGA-IK-7675 TCGA-KT-A7W1 
       17.65         2.43        42.54        12.76        19.00        14.40 
TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-P5-A72U TCGA-P5-A780 TCGA-QH-A6CS TCGA-QH-A6CV 
        2.30         7.96         0.23         2.37        19.33        14.53 
TCGA-QH-A6CX TCGA-QH-A6XC TCGA-RY-A83X TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6U0 
       12.23        16.70        30.87         9.90        62.17        24.39 
TCGA-S9-A6UA TCGA-S9-A6WM TCGA-S9-A7IX TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R2 
        5.85        19.86        26.93        20.02        18.54        10.39 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RM 
       20.48        54.77        24.92        28.08        24.16        36.69 
TCGA-TQ-A7RP TCGA-VM-A8CD TCGA-VW-A8FI TCGA-WY-A85D TCGA-06-0209 TCGA-02-0003 
       30.05         7.89         8.05        37.71         7.63         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
       18.35        23.18        10.59        35.41        20.71        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 
       20.61        87.06        77.65        20.12        24.59        12.16 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
        2.83        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        6.87         3.22        12.59         6.54         2.50        19.86 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
        9.57        19.73        26.43        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       20.84        27.25        22.72        12.62        51.32         8.81 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.96         3.48        27.02        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        92.65        15.65        48.95        16.54        16.93 
TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.90         7.73        10.62        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
       25.12        10.59        14.50        10.55        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.21         3.35        16.80        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 
       24.23        11.90         0.20        10.29        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.42        56.91         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        4.47         3.22         4.04         4.18        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       69.90        73.84        27.22        44.58        15.42        10.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       38.96         4.67         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        8.42         7.40        11.84         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.72        19.82        13.64        13.32        48.69        10.82 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 
        0.26        72.36         4.70         9.57        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       26.76        23.93         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-6390 
       12.56         5.95        16.64         5.98         4.37         5.39 
TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 
      120.56         7.36        22.68        37.84         4.18         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 
        8.42        25.71        12.16         9.80         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
       12.23        14.93        18.02        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 
       12.56         4.27        42.15        11.08        19.33        10.75 
TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        4.80        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       34.92        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85         7.63         9.73        14.93        14.86 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 
        8.94        20.58       127.59         5.82        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 
       12.23        15.85         9.11        14.53         4.14         2.24 
TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 
       11.24         1.35         5.39         2.04        28.93        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0850 
        0.79        13.78        50.53        19.10        13.28        16.37 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       11.77        21.90         0.66        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 
       12.95         4.64        14.86         5.49         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        2.33         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       22.68        12.76         5.42        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

$`DEL PEAK 23(10Q23.31) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 
       17.16        20.09        17.82        20.45        18.64        21.40 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5416 TCGA-06-5858 
       45.60        42.77        59.38        15.32         6.71         6.15 
TCGA-06-6701 TCGA-14-1396 TCGA-14-1456 TCGA-14-1458 TCGA-14-1821 TCGA-14-4157 
        4.96         1.12        40.96         6.67        17.79         3.42 
TCGA-16-1460 TCGA-19-1390 TCGA-19-1787 TCGA-19-5958 TCGA-28-1756 TCGA-76-6656 
        6.41        25.38        12.66        14.07         2.83         4.83 
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
      117.50        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       53.62        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 
      122.73        81.96        75.25        47.93        72.92        91.13 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       36.56        78.28        46.42        18.84        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       37.45        72.95        31.63        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       17.88        30.74        16.18        63.88        46.06        24.59 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 
       18.61        14.56        17.46        13.38         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6404 TCGA-DU-6407 TCGA-DU-6408 
       49.02        46.06         1.22       133.74        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7015 
        7.96         2.40        62.96       154.36       105.21        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
       30.67        26.30        94.32        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       23.31        41.98         2.76        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       16.96        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       26.17        24.99        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       22.29        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42        38.89        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YH TCGA-E1-A7YK 
       57.93        78.21        95.57       130.78        93.21        12.43 
TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z3 
       75.02        15.32         0.76        36.82       146.14        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       25.48        52.21        36.82        14.93        42.54        41.33 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 
       15.35        17.88        22.55        20.61        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       28.54        36.66        48.69        27.52         0.10         6.67 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 
       40.11         0.03        16.54         3.75        17.42        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       39.09        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47        11.28        31.43         1.64 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 
        9.40        63.55         0.10        37.87        33.01         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.10         0.46         5.56         0.23        29.59        34.19 
TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 
       28.27        26.04         0.13         0.07         0.10         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74K 
       16.93         1.81        16.83        17.52        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ 
       69.27        35.44        39.75        40.01        24.92        31.63 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       28.87        20.71        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72W 
        2.37         9.44         5.88         7.59         1.28        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R 
        7.56        12.23        19.20         3.45         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW 
        2.53        12.62        15.85        14.04        14.83        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
        1.91        16.50        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       32.65         5.46        28.08         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
        7.92        23.51        19.99         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 
       15.06        28.37        27.16       169.84        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       98.63        31.59        18.71        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L 
       65.39        16.18        59.05        40.64        30.44        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       33.73        31.20        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85E TCGA-02-0001 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 
       46.88        20.81        11.77        53.10        42.74        90.58 
TCGA-02-0047 TCGA-02-0051 TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 
       14.73        15.09         8.35         6.02        28.70        89.72 
TCGA-02-0087 TCGA-02-0114 TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 TCGA-02-0339 
       57.76        99.98        17.72        14.47         7.33        12.39 
TCGA-02-0432 TCGA-02-2470 TCGA-06-0142 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 
       47.11        12.92         2.20        11.80        10.65        91.00 
TCGA-06-0178 TCGA-06-0240 TCGA-06-0397 TCGA-06-0413 TCGA-06-1086 TCGA-06-2563 
       88.14        20.42         9.01         3.16         6.84        30.64 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 
        0.43        31.50         7.79       115.86        29.23        65.33 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0524 TCGA-12-0773 TCGA-12-0818 TCGA-12-1090 
       19.59        58.68         7.27        43.23        91.76         7.59 
TCGA-12-1098 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 TCGA-26-1442 TCGA-28-5218 
        3.98        53.19         3.91        26.07        31.33         5.16 
TCGA-32-2616 
        7.36 

  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                         156.23                          211.17 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                          12.69                           24.59 
[1] "0.1 - 156.2 (12.7)" "0.0 - 211.2 (24.6)"
[1] "hr=" "6.8"
D53V2, continuous
D53V3, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10Q23.31) MUTATED   510 114
  DEL PEAK 23(10Q23.31) WILD-TYPE  63 398
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10Q23.31) MUTATED    510  114
  DEL PEAK 23(10Q23.31) WILD-TYPE   63  398
                        clus
vv                       DEL PEAK 23(10Q23.31) MUTATED
  BRAIN                                            510
  CENTRAL NERVOUS SYSTEM                           114
                        clus
vv                       DEL PEAK 23(10Q23.31) WILD-TYPE
  BRAIN                                               63
  CENTRAL NERVOUS SYSTEM                             398
[1] 2 2
[1] FALSE
D53V4, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10Q23.31) MUTATED   257 367
  DEL PEAK 23(10Q23.31) WILD-TYPE 196 265
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10Q23.31) MUTATED    257  367
  DEL PEAK 23(10Q23.31) WILD-TYPE  196  265
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  FEMALE                           257                             196
  MALE                             367                             265
[1] 2 2
[1] FALSE
D53V5, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10Q23.31) MUTATED    87 506
  DEL PEAK 23(10Q23.31) WILD-TYPE 171 264
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10Q23.31) MUTATED     87  506
  DEL PEAK 23(10Q23.31) WILD-TYPE  171  264
     clus
vv    DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  NO                             87                             171
  YES                           506                             264
[1] 2 2
[1] FALSE
D53V6, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 23(10Q23.31) MUTATED            68                            25
  DEL PEAK 23(10Q23.31) WILD-TYPE         126                             5
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 23(10Q23.31) MUTATED                 19                27
  DEL PEAK 23(10Q23.31) WILD-TYPE              110               162
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 23(10Q23.31) MUTATED                    13
  DEL PEAK 23(10Q23.31) WILD-TYPE                   5
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 23(10Q23.31) MUTATED                               472
  DEL PEAK 23(10Q23.31) WILD-TYPE                              53
D53V7, multiclass
                                 clus
vv                                DEL PEAK 23(10Q23.31) MUTATED
  ASTROCYTOMA                                                68
  GLIOBLASTOMA MULTIFORME (GBM)                              25
  OLIGOASTROCYTOMA                                           19
  OLIGODENDROGLIOMA                                          27
  TREATED PRIMARY GBM                                        13
  UNTREATED PRIMARY (DE NOVO) GBM                           472
                                 clus
vv                                DEL PEAK 23(10Q23.31) WILD-TYPE
  ASTROCYTOMA                                                 126
  GLIOBLASTOMA MULTIFORME (GBM)                                 5
  OLIGOASTROCYTOMA                                            110
  OLIGODENDROGLIOMA                                           162
  TREATED PRIMARY GBM                                           5
  UNTREATED PRIMARY (DE NOVO) GBM                              53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 23(10Q23.31) MUTATED                                  1    11
  DEL PEAK 23(10Q23.31) WILD-TYPE                                0    10
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 23(10Q23.31) MUTATED                          53   537
  DEL PEAK 23(10Q23.31) WILD-TYPE                        18   422
D53V8, multiclass
                                  clus
vv                                 DEL PEAK 23(10Q23.31) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       11
  BLACK OR AFRICAN AMERICAN                                   53
  WHITE                                                      537
                                  clus
vv                                 DEL PEAK 23(10Q23.31) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               0
  ASIAN                                                         10
  BLACK OR AFRICAN AMERICAN                                     18
  WHITE                                                        422
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V9, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10Q23.31) MUTATED    16 524
  DEL PEAK 23(10Q23.31) WILD-TYPE  28 397
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10Q23.31) MUTATED     16  524
  DEL PEAK 23(10Q23.31) WILD-TYPE   28  397
                        clus
vv                       DEL PEAK 23(10Q23.31) MUTATED
  HISPANIC OR LATINO                                16
  NOT HISPANIC OR LATINO                           524
                        clus
vv                       DEL PEAK 23(10Q23.31) WILD-TYPE
  HISPANIC OR LATINO                                  28
  NOT HISPANIC OR LATINO                             397
[1] 2 2
[1] FALSE

Clustering(54) Variable = DEL PEAK 24(10Q26.3) MUTATION ANALYSIS
D54V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 24(10Q26.3) MUTATED   163 494
  DEL PEAK 24(10Q26.3) WILD-TYPE 317 104
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                           657                            421 
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                           494                            104 
$`DEL PEAK 24(10Q26.3) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-DH-A66B TCGA-E1-A7YN TCGA-FG-A87N TCGA-06-5408 
        3.98        51.55        42.05        23.90        18.64        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        2.73         3.75         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        4.77         1.55         4.77        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 
        2.56        14.60        17.72        15.35        21.73        15.65 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.68        14.73         6.77        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.22        10.95        12.69        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.04        15.12        11.97         0.95         6.21 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       23.05        13.78         3.25         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       15.95         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 
        7.10         1.15        30.18         0.92        12.43         0.99 
TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.85         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.96         3.78         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0960 
       10.29        14.01         9.14        21.24        13.97         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
       14.27         3.39        25.38         3.65         7.17         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       13.87         9.73         7.13         9.37         9.40         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       18.97        19.33         5.06         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.77         7.59         2.86        14.40        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 
        0.13         0.66         6.74         4.77        15.39        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.86        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
       15.95        22.78        25.18        21.14         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 
       12.46         4.08         1.45        25.58         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.34        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.17         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        5.03        23.90        34.45        18.64        36.20         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 
        6.28        20.55         7.69        21.01         6.38        17.69 
TCGA-CS-6188 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-A4XF TCGA-DB-A64L TCGA-DB-A64O 
       26.76        50.86        44.52        33.57        24.20        25.48 
TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A7UU TCGA-DU-5847 
       11.24        19.96        30.21        27.81        13.71        18.02 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6399 
        6.74        13.38         8.45        17.49        75.16        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04        11.64        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7012 
      114.08        11.47        62.96       156.23        14.99         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 
        8.84       117.40        90.77        10.36         7.96        18.94 
TCGA-DU-7301 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8165 TCGA-DU-A5TY 
       25.91         5.10        23.74        14.60        19.13        33.96 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5311 
       11.41        26.76        21.30         7.50         0.56       134.27 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM 
       14.30        29.13         3.65        19.46        16.18        21.30 
TCGA-E1-A7YQ TCGA-E1-A7YV TCGA-E1-A7Z2 TCGA-E1-A7Z4 TCGA-FG-6688 TCGA-FG-6692 
       51.88        32.45        13.08       145.05        18.77        18.44 
TCGA-FG-7643 TCGA-FG-8188 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A6J3 TCGA-FG-A70Z 
       20.09        14.96        10.72        18.38        22.26        10.78 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7476 
       48.69         5.72        11.54         0.13        16.54         6.54 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7606 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7693 
      172.77         4.01        17.29        31.69         0.10        17.52 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-7902 
        0.23         0.49        23.61         3.68         3.72        31.43 
TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-8564 
       16.24        12.23         2.50        13.78        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HT-A61C 
        0.23        20.22        27.35         5.33        16.14        17.65 
TCGA-HT-A74H TCGA-HW-8321 TCGA-HW-A5KK TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EZ 
        2.43        42.54        12.76        19.00        14.40         2.30 
TCGA-P5-A5F2 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A780 TCGA-QH-A6CS TCGA-QH-A6CV 
        7.96         0.23        10.42         2.37        19.33        14.53 
TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XC TCGA-RY-A83X TCGA-RY-A83Z 
       12.23        10.29         1.91        16.70        30.87         9.90 
TCGA-S9-A6TS TCGA-S9-A6U0 TCGA-S9-A6UB TCGA-S9-A6WM TCGA-S9-A6WQ TCGA-S9-A7IS 
       62.17        24.39       123.65        19.86        14.07         7.92 
TCGA-S9-A7IX TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 
       26.93        20.02        15.06        18.54        10.39        99.06 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84I TCGA-TM-A84J 
       20.48        54.77        65.39        24.92        28.08        24.16 
TCGA-TQ-A7RF TCGA-TQ-A7RJ TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-VM-A8CD 
       21.37        40.41        36.69        30.05        25.87         7.89 
TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A85D TCGA-06-0209 TCGA-02-0003 TCGA-02-0006 
        8.05        13.32        37.71         7.63         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       23.18        10.59        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       87.06        77.65        20.12        42.74        24.59        12.16 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
        2.83        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
        6.87         3.22        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
       19.86         8.35         9.57        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        27.25        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.32         8.81        16.96         3.48        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       11.67        17.65        92.65        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 
       12.23         9.90         7.73        10.62        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
        4.37        25.12        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 
        9.27        16.21         3.35        16.80        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.98        22.72        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 
       26.70        24.23        11.90         0.20        10.29        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        9.44         3.42        56.91         5.85        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 
       13.12         4.47         3.22         4.04         4.18        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       24.16         0.72        19.82        13.64        13.32        48.69 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 
       10.82         0.26        72.36         4.70         9.57        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76        23.93         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       15.32        13.61        33.90         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
       17.65        12.56        30.64         5.95        16.64         5.98 
TCGA-06-2567 TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        4.37         5.39       120.56        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 
        1.74         8.42        25.71        12.16         9.80         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        3.39        12.23        14.93        18.02        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 
        0.72        12.56         4.27        42.15        11.08        58.68 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       19.33        10.75         4.80        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 
       20.38        28.41        15.06        53.85         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.93        14.86        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       33.21        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        3.98         2.24        11.24         1.35         5.39         2.04 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 
       19.30         0.79        13.78        50.53        19.10        13.28 
TCGA-16-0846 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1386 
        3.91        16.37        11.77        21.90         0.66         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 
        5.95         4.64        14.86         5.49         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        2.33         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       22.68        12.76         5.42        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

$`DEL PEAK 24(10Q26.3) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-7300 TCGA-DU-A76O 
        1.48        46.88        46.72        31.82        62.01        17.16 
TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 
       20.09        17.82        20.45        21.40        45.60        42.77 
TCGA-R8-A73M TCGA-06-1806 TCGA-06-5416 TCGA-06-5858 TCGA-06-6701 TCGA-14-1396 
       59.38        15.32         6.71         6.15         4.96         1.12 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1821 TCGA-16-1460 TCGA-19-1787 TCGA-27-1831 
       40.96         6.67        17.79         6.41        12.66        16.60 
TCGA-27-2523 TCGA-28-1755 TCGA-28-1756 TCGA-32-2632 TCGA-CS-4938 TCGA-CS-4942 
       16.08         1.55         2.83         8.84       117.50        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6290 
       36.36        60.10        40.18         0.26        53.62        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       46.95        48.30        49.94        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 
       75.25        47.93        72.92        91.13        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG 
       46.42        18.84        30.21        39.78        37.45        72.95 
TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       31.63        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O 
       29.23        14.40        18.51        12.10        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66F TCGA-DH-A66G 
       16.18        63.88        46.06        24.59        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 
       54.25        23.21        17.46        18.61        14.56        17.46 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        6.81       182.33        18.94        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6404 TCGA-DU-6410 
       22.42        49.02        46.06         1.22       133.74         7.96 
TCGA-DU-6542 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 
        2.40       154.36       105.21        30.67        26.30        94.32 
TCGA-DU-7299 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8163 
       44.02        60.30        23.31        41.98         2.76        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 
       31.69        24.43        26.17        24.99        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       95.11        20.98        22.29        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 
       51.52        37.38        44.42        38.89        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       41.13        79.99        57.93        78.21        95.57       130.78 
TCGA-E1-A7YH TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YW 
       93.21        12.43        75.02        15.32         0.76        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
      146.14        73.48        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
       47.77        25.48        52.21        36.82        14.93        42.54 
TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 
       41.33        15.35        17.88        22.55        20.61        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       13.68        14.24        16.01        22.52        32.61        38.27 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A710 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 
       28.54        36.66        27.52         0.10         6.67        40.11 
TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        0.03         3.75        17.42        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
       75.19        95.93       106.95         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
      122.47         4.57         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7691 
       44.68         6.05        42.74         0.10        14.96         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
        2.96         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7858 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 
       50.63        37.15         0.33         0.13         5.33        35.47 
TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       11.28         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 
       33.01         6.25         0.10         0.46         5.56         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB 
       29.59        34.19        26.04         0.13         0.07         0.10 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74J 
        2.70        16.93         1.81        16.83        17.52        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 
       68.32        69.27        35.44        39.75        40.01        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW 
       31.63        28.87        20.71        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A5F6 
        7.99         2.37         9.44         5.88         7.59         1.28 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R 
        7.56        12.23        19.20         3.45         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CW 
        2.53        12.62        15.85        14.04        14.83        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA 
       13.41         9.17        14.53        16.34        16.73        16.50 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83Y 
       11.08        12.99        88.83        94.03        32.65         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       41.10        40.93        35.38        36.82        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WD 
       32.61        35.15        98.24        95.93         5.85        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
      135.22        85.55        38.56        84.99        31.10        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 
       18.61        18.64        36.13        23.51        19.99         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R4 
        2.04        20.68        28.37        27.16       169.84        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       98.63        31.59        18.71        48.33        49.32        34.78 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M 
       16.18        59.05        40.64        30.44        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RG 
       33.24        25.38        18.61        14.93        23.80        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ 
       15.98         2.04        44.09        33.73        31.20        26.14 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        45.93        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       16.01        23.21        51.06        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85E TCGA-02-0001 TCGA-02-0024 TCGA-02-0028 
       45.80        46.88        20.81        11.77        53.10        90.58 
TCGA-02-0047 TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 TCGA-02-0087 TCGA-02-0111 
       14.73         6.02        28.70        89.72        57.76        23.18 
TCGA-02-0114 TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 TCGA-02-0338 TCGA-02-0339 
       99.98        17.72        14.47         7.33        10.59        12.39 
TCGA-02-2470 TCGA-06-0142 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 
       12.92         2.20        11.80        10.65        91.00        88.14 
TCGA-06-0240 TCGA-06-0397 TCGA-06-0413 TCGA-06-1086 TCGA-06-2569 TCGA-06-2570 
       20.42         9.01         3.16         6.84         0.43        31.50 
TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0350 TCGA-08-0351 TCGA-08-0516 
        7.79         7.36        37.84        29.23        65.33        19.59 
TCGA-08-0524 TCGA-12-0773 TCGA-12-0818 TCGA-12-1090 TCGA-12-1099 TCGA-14-0871 
        7.27        43.23        91.76         7.59         4.14        28.93 
TCGA-15-1447 TCGA-16-0849 TCGA-19-1385 TCGA-19-1388 TCGA-26-1442 TCGA-28-5218 
       53.19        26.07        10.75        12.95        31.33         5.16 
TCGA-32-2616 
        7.36 

  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                        172.77                         211.17 
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                         13.61                          23.70 
[1] "0.1 - 172.8 (13.6)" "0.0 - 211.2 (23.7)"
[1] "hr=" "5.3"
D54V2, continuous
D54V3, binary
                                cls
clus                               0   1
  DEL PEAK 24(10Q26.3) MUTATED   511 150
  DEL PEAK 24(10Q26.3) WILD-TYPE  62 362
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q26.3) MUTATED    511  150
  DEL PEAK 24(10Q26.3) WILD-TYPE   62  362
                        clus
vv                       DEL PEAK 24(10Q26.3) MUTATED
  BRAIN                                           511
  CENTRAL NERVOUS SYSTEM                          150
                        clus
vv                       DEL PEAK 24(10Q26.3) WILD-TYPE
  BRAIN                                              62
  CENTRAL NERVOUS SYSTEM                            362
[1] 2 2
[1] FALSE
D54V4, binary
                                cls
clus                               0   1
  DEL PEAK 24(10Q26.3) MUTATED   275 386
  DEL PEAK 24(10Q26.3) WILD-TYPE 178 246
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q26.3) MUTATED    275  386
  DEL PEAK 24(10Q26.3) WILD-TYPE  178  246
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  FEMALE                          275                            178
  MALE                            386                            246
[1] 2 2
[1] FALSE
D54V5, binary
                                cls
clus                               0   1
  DEL PEAK 24(10Q26.3) MUTATED   101 530
  DEL PEAK 24(10Q26.3) WILD-TYPE 157 240
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q26.3) MUTATED    101  530
  DEL PEAK 24(10Q26.3) WILD-TYPE  157  240
     clus
vv    DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  NO                           101                            157
  YES                          530                            240
[1] 2 2
[1] FALSE
D54V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 24(10Q26.3) MUTATED            81                            25
  DEL PEAK 24(10Q26.3) WILD-TYPE         113                             5
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 24(10Q26.3) MUTATED                 32                37
  DEL PEAK 24(10Q26.3) WILD-TYPE               97               152
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 24(10Q26.3) MUTATED                    14
  DEL PEAK 24(10Q26.3) WILD-TYPE                   4
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 24(10Q26.3) MUTATED                               472
  DEL PEAK 24(10Q26.3) WILD-TYPE                              53
D54V7, multiclass
                                 clus
vv                                DEL PEAK 24(10Q26.3) MUTATED
  ASTROCYTOMA                                               81
  GLIOBLASTOMA MULTIFORME (GBM)                             25
  OLIGOASTROCYTOMA                                          32
  OLIGODENDROGLIOMA                                         37
  TREATED PRIMARY GBM                                       14
  UNTREATED PRIMARY (DE NOVO) GBM                          472
                                 clus
vv                                DEL PEAK 24(10Q26.3) WILD-TYPE
  ASTROCYTOMA                                                113
  GLIOBLASTOMA MULTIFORME (GBM)                                5
  OLIGOASTROCYTOMA                                            97
  OLIGODENDROGLIOMA                                          152
  TREATED PRIMARY GBM                                          4
  UNTREATED PRIMARY (DE NOVO) GBM                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 24(10Q26.3) MUTATED                                  1    11
  DEL PEAK 24(10Q26.3) WILD-TYPE                                0    10
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 24(10Q26.3) MUTATED                          55   572
  DEL PEAK 24(10Q26.3) WILD-TYPE                        16   387
D54V8, multiclass
                                  clus
vv                                 DEL PEAK 24(10Q26.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      11
  BLACK OR AFRICAN AMERICAN                                  55
  WHITE                                                     572
                                  clus
vv                                 DEL PEAK 24(10Q26.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        10
  BLACK OR AFRICAN AMERICAN                                    16
  WHITE                                                       387
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V9, binary
                                cls
clus                               0   1
  DEL PEAK 24(10Q26.3) MUTATED    19 558
  DEL PEAK 24(10Q26.3) WILD-TYPE  25 363
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q26.3) MUTATED     19  558
  DEL PEAK 24(10Q26.3) WILD-TYPE   25  363
                        clus
vv                       DEL PEAK 24(10Q26.3) MUTATED
  HISPANIC OR LATINO                               19
  NOT HISPANIC OR LATINO                          558
                        clus
vv                       DEL PEAK 24(10Q26.3) WILD-TYPE
  HISPANIC OR LATINO                                 25
  NOT HISPANIC OR LATINO                            363
[1] 2 2
[1] FALSE

Clustering(55) Variable = DEL PEAK 25(11P15.5) MUTATION ANALYSIS
D55V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 25(11P15.5) MUTATED    95 138
  DEL PEAK 25(11P15.5) WILD-TYPE 385 460
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           233                            845 
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           138                            460 
$`DEL PEAK 25(11P15.5) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-1806 TCGA-06-5408 TCGA-06-5856 TCGA-06-A7TK 
        3.98        51.55        15.32        11.74         3.75        14.60 
TCGA-06-A7TL TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 
       17.72         6.77        44.02        14.53        11.97         6.21 
TCGA-14-0865 TCGA-14-1453 TCGA-14-1454 TCGA-14-1459 TCGA-14-1794 TCGA-14-1821 
       16.50         1.15        30.18        12.43         0.99        17.79 
TCGA-14-1823 TCGA-14-3477 TCGA-16-0848 TCGA-16-1045 TCGA-19-1390 TCGA-19-1392 
       17.85         3.78        17.59        29.03        25.38         3.65 
TCGA-19-2623 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-27-1830 TCGA-27-2521 
        7.53        16.80        14.96        13.87         5.06        16.77 
TCGA-28-1756 TCGA-28-2502 TCGA-28-2509 TCGA-32-1973 TCGA-32-1976 TCGA-32-2615 
        2.83         0.66         4.77        21.07         0.49        15.95 
TCGA-32-2632 TCGA-32-4208 TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 TCGA-74-6584 
        8.84        21.14         3.72        10.85        11.84         7.50 
TCGA-76-4934 TCGA-76-6286 TCGA-CS-4943 TCGA-CS-6290 TCGA-CS-6666 TCGA-DB-5275 
        2.53        20.98        36.36        37.38        46.95        47.93 
TCGA-DB-5277 TCGA-DB-A64X TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A66D 
       50.86        18.51        11.24        19.96        63.88        27.81 
TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-6396 
       17.19        17.46        13.71        17.46        13.38        75.16 
TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7014 
      114.08        11.47        62.96       156.23        14.99       117.40 
TCGA-DU-7015 TCGA-DU-7298 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8165 TCGA-DU-8166 
       90.77        18.94         2.76         5.10        19.13        16.96 
TCGA-DU-8167 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A6S7 TCGA-DU-A7TA 
       15.48        29.85        31.69        26.17        20.98        84.33 
TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-A7YE TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YL 
       50.14        41.13        29.13         3.65        12.43        16.18 
TCGA-E1-A7YU TCGA-E1-A7YW TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-8188 TCGA-FG-A4MW 
        0.76        36.82        36.82        14.93        14.96        18.38 
TCGA-FG-A4MY TCGA-FG-A60L TCGA-HT-7470 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7601 
       23.70        21.53        40.11        24.26         6.38         5.03 
TCGA-HT-7603 TCGA-HT-7607 TCGA-HT-7676 TCGA-HT-7686 TCGA-HT-7690 TCGA-HT-7693 
       23.18         3.16         0.16        42.74         0.10        17.52 
TCGA-HT-7873 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8104 TCGA-HT-8111 
       23.61        31.43        63.55        37.87        12.23         0.23 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A616 
       34.19        28.27        15.72        20.22         2.70         1.81 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74O TCGA-HW-7493 TCGA-HW-8319 TCGA-IK-7675 
       16.83        17.52         0.10        69.27        39.75        19.00 
TCGA-P5-A5F6 TCGA-P5-A735 TCGA-QH-A65S TCGA-QH-A6XA TCGA-RY-A83Z TCGA-S9-A6TV 
        1.28         9.60         2.53        16.50         9.90        18.77 
TCGA-S9-A6WM TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R4 TCGA-S9-A7R7 
       19.86        19.99        20.02        18.54        30.05        98.63 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A84I TCGA-TM-A84J 
       18.71        20.48        54.77        48.33        28.08        24.16 
TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-VM-A8CF TCGA-WH-A86K 
       15.98        40.41        25.87        61.41        20.02        13.32 
TCGA-WY-A859 TCGA-WY-A85C TCGA-WY-A85E TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 
       39.88        46.88        20.81        35.41        82.59        20.61 
TCGA-02-0016 TCGA-02-0024 TCGA-02-0033 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       87.06        53.10         2.83        14.73         3.22        15.09 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 
       12.59         2.50         8.35         9.57        28.70        10.19 
TCGA-02-0075 TCGA-02-0084 TCGA-02-0086 TCGA-02-0087 TCGA-02-0099 TCGA-02-0104 
       20.84        12.62         8.81        57.76         3.48        65.00 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0281 TCGA-02-0332 TCGA-02-0456 TCGA-02-2466 
       92.65        99.98         3.98        25.71         3.35        16.80 
TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-0146 TCGA-06-0159 TCGA-06-0166 
       15.32        22.72        33.67        20.09         9.44         5.85 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 TCGA-06-0192 TCGA-06-0197 TCGA-06-0213 
        3.22         4.18        69.90        38.96         5.56         0.53 
TCGA-06-0216 TCGA-06-0221 TCGA-06-0238 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 
       24.16        19.82        13.32        72.36         4.70        35.11 
TCGA-06-0649 TCGA-06-0686 TCGA-06-1086 TCGA-06-1800 TCGA-06-1805 TCGA-06-2558 
        2.10        14.20         6.84        26.79        33.90        12.49 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 
        0.43        31.50         7.79         7.36        37.84         4.18 
TCGA-08-0348 TCGA-08-0351 TCGA-08-0353 TCGA-08-0355 TCGA-08-0375 TCGA-08-0380 
       12.16        65.33         8.42        24.56        12.23        14.93 
TCGA-08-0510 TCGA-08-0517 TCGA-12-0616 TCGA-12-0619 TCGA-12-0691 TCGA-12-0772 
        4.27        58.68        14.73        34.92        12.13        53.85 
TCGA-12-0819 TCGA-12-0822 TCGA-12-0827 TCGA-12-1099 TCGA-14-0813 TCGA-14-0817 
       24.79        23.51        38.76         4.14         1.35         5.39 
TCGA-14-0867 TCGA-14-0871 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        2.04        28.93        50.53        53.19        13.28         3.91 
TCGA-16-0850 TCGA-19-1387 TCGA-26-1442 TCGA-26-5133 TCGA-28-5216 
       16.37         5.95        31.33        14.86        13.64 

$`DEL PEAK 25(11P15.5) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5410 TCGA-06-5411 
       21.40        45.60        42.77        59.38         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        6.15         4.57         5.23         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        1.55         4.77         4.96        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        2.56        15.35        21.73        15.65        25.68        14.73 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.77        26.93        15.22        10.95        12.69        34.92 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        15.12         0.95        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
       13.78         3.25         2.89        26.33        15.95         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.05        58.78        23.11         7.10 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 
        0.92        40.96         6.67         1.97         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-1047 TCGA-16-1055 
        7.17        17.49         7.96         3.42         4.57        10.29 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 
       14.01         9.14        21.24        13.97         6.41         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       14.27         3.39         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         1.08         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-A60I 
        4.73        12.10         1.78        22.49        14.07        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       28.54        10.03         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        8.88        18.97        19.33        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       18.08        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 TCGA-32-1970 TCGA-32-1977 
        1.22         1.55         0.13         6.74        15.39         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2634 TCGA-32-2638 
       16.93        12.23        20.78        15.02        22.78        25.18 
TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.86        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44         0.20        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         4.80         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        9.17        36.85        16.70         3.29         2.70        17.06 
TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
        8.35         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       36.20         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       43.89        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
        6.38        17.69        26.76        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 
      122.73        81.96        75.25        72.92        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       36.56        78.28        46.42        18.84        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5143 
       14.40        12.10        17.88        30.74        16.18        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UV 
       24.59        30.21        17.19        54.25        23.21        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       18.02        14.56         6.74         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       49.02        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
       11.64       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-6542 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7018 
        2.40       154.36       105.21         6.54         8.84        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 
       26.30        10.36         7.96        94.32        44.02        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       60.30        23.31        41.98        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY 
       21.40        14.17        33.27        24.43        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       25.55        21.57        95.11        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30        17.98       139.04        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
       44.42        38.89         0.56        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH 
      134.27        78.21        95.57       130.78        14.30        93.21 
TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YV 
       19.46        21.30        75.02        51.88        15.32        32.45 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 
        0.23         0.20        47.77        25.48        52.21        18.77 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A60J 
       22.52        32.61        38.27        10.72        18.71        14.76 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       48.69         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 
       29.85       122.47         4.57        17.29        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 
       56.09        57.60         0.23        14.27        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 
       44.68         6.05         0.10        31.69        14.96         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
        2.96         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63         0.49        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 
        3.68         5.33        35.47         3.72        11.28         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       16.24         9.40         0.10        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-A4DS 
        0.46         2.50         5.56        13.78        29.59         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13         0.07        27.35         0.10         5.33 
TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.93        16.14        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7495 
       11.05        56.58        45.44        41.49        68.32        35.44 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       20.71        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         9.44         5.88         7.96         7.59 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
       13.61         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
        4.41        15.16        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XC 
       10.29        14.53        16.34        16.73         1.91        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       87.12        41.10        40.93        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 
       36.13         7.92        26.93        23.51         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       20.68        15.06        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       99.06        31.59        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M 
       16.18        59.05        40.64        30.44        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
       19.69         2.04        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       30.05        26.14        33.93        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH 
       43.20        13.51         0.10         7.89        39.16        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 
       37.05        16.01        23.21         8.05        51.06        43.96 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85D TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       43.40        45.80        37.71         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0021 TCGA-02-0023 
       18.35        23.18        10.59        20.71        77.65        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        12.16        90.58        14.14         3.62 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0054 TCGA-02-0057 
       10.72        10.52        18.31         6.87         6.54        19.86 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 
        6.02        19.73        26.43        25.05         5.49        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 TCGA-02-0102 TCGA-02-0106 
       89.72        22.72        51.32        16.96        27.02        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       17.65        23.18        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2485 
       47.11        11.34         9.27        16.21        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
        3.98        12.95        25.35        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       17.79        10.09         8.61        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 
       13.94        10.45         3.19        10.82        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       56.91        10.65        19.66         3.29        13.12         4.47 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
        4.04        91.00        88.14        20.25         3.65        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 
       27.22        44.58        15.42        10.42         4.67         7.40 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 
        0.39         7.66         8.42         7.40        11.84        15.02 
TCGA-06-0219 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
        0.72        13.64        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        0.26         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        9.80        23.57        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 
       16.57        20.78        26.76        23.93         4.04        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32        13.61         1.08         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-6390 
       30.64         5.95        16.64         5.98         4.37         5.39 
TCGA-06-6693 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
      120.56        22.68       115.86         1.74         8.42        25.71 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 
        9.80        29.23         1.28        17.95        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
       22.29         3.39        18.02        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 
       12.56        42.15        11.08        19.59        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 
        4.80         7.27        15.98        18.41         7.56        12.99 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.45         7.59        94.78         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 
       26.66         3.65        20.38        28.41        15.06        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 
        7.63         9.73        14.93        14.86        91.76        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       10.62        27.78         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 TCGA-14-1037 TCGA-14-1043 
       14.53         3.98         2.24        11.24        19.30         0.79 
TCGA-15-0742 TCGA-15-1446 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       13.78        19.10        26.07        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-26-5134 TCGA-26-5139 
       10.75         9.07        12.95         4.64         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
        5.16        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                        156.23                         211.17 
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                         17.46                          15.45 
[1] "0.1 - 156.2 (17.5)" "0.0 - 211.2 (15.4)"
[1] "hr=" "1.1"
D55V2, continuous
D55V3, binary
                                cls
clus                               0   1
  DEL PEAK 25(11P15.5) MUTATED   129 105
  DEL PEAK 25(11P15.5) WILD-TYPE 444 407
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(11P15.5) MUTATED    129  105
  DEL PEAK 25(11P15.5) WILD-TYPE  444  407
                        clus
vv                       DEL PEAK 25(11P15.5) MUTATED
  BRAIN                                           129
  CENTRAL NERVOUS SYSTEM                          105
                        clus
vv                       DEL PEAK 25(11P15.5) WILD-TYPE
  BRAIN                                             444
  CENTRAL NERVOUS SYSTEM                            407
[1] 2 2
[1] FALSE
D55V4, binary
                                cls
clus                               0   1
  DEL PEAK 25(11P15.5) MUTATED   111 123
  DEL PEAK 25(11P15.5) WILD-TYPE 342 509
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(11P15.5) MUTATED    111  123
  DEL PEAK 25(11P15.5) WILD-TYPE  342  509
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  FEMALE                          111                            342
  MALE                            123                            509
[1] 2 2
[1] FALSE
D55V5, binary
                                cls
clus                               0   1
  DEL PEAK 25(11P15.5) MUTATED    41 180
  DEL PEAK 25(11P15.5) WILD-TYPE 217 590
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(11P15.5) MUTATED     41  180
  DEL PEAK 25(11P15.5) WILD-TYPE  217  590
     clus
vv    DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  NO                            41                            217
  YES                          180                            590
[1] 2 2
[1] FALSE
D55V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 25(11P15.5) MUTATED            59                             6
  DEL PEAK 25(11P15.5) WILD-TYPE         135                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 25(11P15.5) MUTATED                 29                17
  DEL PEAK 25(11P15.5) WILD-TYPE              100               172
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 25(11P15.5) MUTATED                     6
  DEL PEAK 25(11P15.5) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 25(11P15.5) MUTATED                               117
  DEL PEAK 25(11P15.5) WILD-TYPE                             408
D55V7, multiclass
                                 clus
vv                                DEL PEAK 25(11P15.5) MUTATED
  ASTROCYTOMA                                               59
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                          29
  OLIGODENDROGLIOMA                                         17
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          117
                                 clus
vv                                DEL PEAK 25(11P15.5) WILD-TYPE
  ASTROCYTOMA                                                135
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           100
  OLIGODENDROGLIOMA                                          172
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            408
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 25(11P15.5) MUTATED                                  0     3
  DEL PEAK 25(11P15.5) WILD-TYPE                                1    18
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 25(11P15.5) MUTATED                          14   211
  DEL PEAK 25(11P15.5) WILD-TYPE                        57   748
D55V8, multiclass
                                  clus
vv                                 DEL PEAK 25(11P15.5) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       3
  BLACK OR AFRICAN AMERICAN                                  14
  WHITE                                                     211
                                  clus
vv                                 DEL PEAK 25(11P15.5) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        18
  BLACK OR AFRICAN AMERICAN                                    57
  WHITE                                                       748
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V9, binary
                                cls
clus                               0   1
  DEL PEAK 25(11P15.5) MUTATED     9 197
  DEL PEAK 25(11P15.5) WILD-TYPE  35 724
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(11P15.5) MUTATED      9  197
  DEL PEAK 25(11P15.5) WILD-TYPE   35  724
                        clus
vv                       DEL PEAK 25(11P15.5) MUTATED
  HISPANIC OR LATINO                                9
  NOT HISPANIC OR LATINO                          197
                        clus
vv                       DEL PEAK 25(11P15.5) WILD-TYPE
  HISPANIC OR LATINO                                 35
  NOT HISPANIC OR LATINO                            724
[1] 2 2
[1] FALSE

Clustering(56) Variable = DEL PEAK 26(11P15.1) MUTATION ANALYSIS
D56V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(11P15.1) MUTATED    63 112
  DEL PEAK 26(11P15.1) WILD-TYPE 417 486
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                           175                            903 
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                           112                            486 
$`DEL PEAK 26(11P15.1) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-1806 TCGA-06-5856 TCGA-06-A7TK TCGA-06-A7TL 
        3.98        51.55        15.32         3.75        14.60        17.72 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 TCGA-14-0865 
        6.77        44.02        14.53        11.97         6.21        16.50 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1459 TCGA-14-1794 TCGA-14-1821 TCGA-14-1823 
        1.15        30.18        12.43         0.99        17.79        17.85 
TCGA-14-3477 TCGA-16-0848 TCGA-16-1045 TCGA-19-1390 TCGA-19-1392 TCGA-19-2623 
        3.78        17.59        29.03        25.38         3.65         7.53 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-27-1830 TCGA-28-1756 TCGA-28-2502 
       16.80        14.96        13.87         5.06         2.83         0.66 
TCGA-28-2509 TCGA-32-1976 TCGA-32-2615 TCGA-32-2632 TCGA-32-4210 TCGA-32-4719 
        4.77         0.49        15.95         8.84         3.72        10.85 
TCGA-41-3915 TCGA-74-6584 TCGA-76-4934 TCGA-76-6286 TCGA-DB-5277 TCGA-DH-5140 
       11.84         7.50         2.53        20.98        50.86        19.96 
TCGA-DH-5142 TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-6396 
       63.88        27.81        17.19        17.46        13.71        75.16 
TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7014 
      114.08        11.47        62.96       156.23        14.99       117.40 
TCGA-DU-7015 TCGA-DU-8158 TCGA-DU-8165 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU 
       90.77         5.10        19.13        29.85        31.69        26.17 
TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-A7YE TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YL 
       50.14        41.13        29.13         3.65        12.43        16.18 
TCGA-E1-A7YV TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-A4MW TCGA-FG-A60L 
       32.45        25.48        36.82        14.93        18.38        21.53 
TCGA-HT-7470 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7601 TCGA-HT-7607 TCGA-HT-7686 
       40.11        24.26         6.38         5.03         3.16        42.74 
TCGA-HT-7693 TCGA-HT-7873 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8111 
       17.52        23.61        31.43        63.55        37.87         0.23 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 
       28.27        15.72        20.22         2.70         1.81        16.83 
TCGA-HT-A61B TCGA-HW-8319 TCGA-IK-7675 TCGA-P5-A5F6 TCGA-P5-A72Z TCGA-QH-A65S 
       17.52        39.75        19.00         1.28        11.64         2.53 
TCGA-RY-A83Z TCGA-S9-A6WM TCGA-S9-A7J0 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z 
        9.90        19.86        20.02        98.63        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RH TCGA-TQ-A7RR 
       54.77        48.33        28.08        24.16        15.98        25.87 
TCGA-VM-A8CF TCGA-WY-A859 TCGA-02-0010 TCGA-02-0024 TCGA-02-0033 TCGA-02-0047 
       20.02        39.88        35.41        53.10         2.83        14.73 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 
        3.22        12.59         2.50         9.57        28.70        10.19 
TCGA-02-0075 TCGA-02-0084 TCGA-02-0086 TCGA-02-0087 TCGA-02-0099 TCGA-02-0113 
       20.84        12.62         8.81        57.76         3.48        92.65 
TCGA-02-0114 TCGA-02-0281 TCGA-02-0332 TCGA-02-0456 TCGA-02-2466 TCGA-06-0128 
       99.98         3.98        25.71         3.35        16.80        22.72 
TCGA-06-0159 TCGA-06-0166 TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 TCGA-06-0192 
        9.44         5.85         3.22         4.18        69.90        38.96 
TCGA-06-0197 TCGA-06-0216 TCGA-06-0238 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 
        5.56        24.16        13.32        72.36         4.70        35.11 
TCGA-06-0649 TCGA-06-0686 TCGA-06-1086 TCGA-06-1800 TCGA-06-1805 TCGA-06-2558 
        2.10        14.20         6.84        26.79        33.90        12.49 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0353 
        0.43        31.50         7.79         7.36        37.84         8.42 
TCGA-08-0510 TCGA-12-0616 TCGA-12-0619 TCGA-12-0772 TCGA-12-0819 TCGA-12-0822 
        4.27        14.73        34.92        53.85        24.79        23.51 
TCGA-12-0827 TCGA-12-1099 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-15-1447 
       38.76         4.14         5.39         2.04        28.93        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0850 TCGA-19-1387 TCGA-26-1442 TCGA-26-5133 
       13.28         3.91        16.37         5.95        31.33        14.86 
TCGA-28-5216 
       13.64 

$`DEL PEAK 26(11P15.1) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 
       21.40        45.60        42.77        59.38        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        2.73         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96        26.79         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 
        3.12         2.56        15.35        21.73        15.65        25.68 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       14.73        59.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       34.92        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       23.05        13.78         3.25         2.89        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1825 
        7.10         0.92        40.96         6.67         1.97         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-1047 
        5.88         7.17        17.49         7.96         3.42         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        8.61        14.27         3.39         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         4.87         1.08         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.90         4.73        12.10         1.78        22.49        14.07 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       17.79        28.54        10.03         9.73         7.13         9.37 
TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1832 
        9.40         8.88        18.97        19.33        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        16.77        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 
        7.63         8.48         1.22         1.55         0.13         6.74 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.39        21.07         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.86        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 
       15.02        22.78        25.18        21.14        12.59        19.86 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
        4.44         0.20        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.80         4.54         3.09         3.65         9.17        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 
       16.70         3.29         2.70        17.06         8.35         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        5.03        23.90        34.45        18.64        36.20         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
        6.28        20.55       117.50         7.69        43.89        36.36 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       60.10        40.18         0.26        21.01        53.62         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       17.69        26.76        37.38        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       17.88        30.74        16.18        46.06        24.59        30.21 
TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       17.19        54.25        23.21        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       49.02        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 
       11.64       133.74        19.89        16.83        94.52         7.96 
TCGA-DU-6542 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7018 
        2.40       154.36       105.21         6.54         8.84        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 
       25.91        60.30        23.31        41.98         2.76        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       33.27        24.43        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       95.11        20.98        22.29        11.41        26.76        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
       44.42        38.89         0.56        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH 
      134.27        78.21        95.57       130.78        14.30        93.21 
TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       19.46        21.30        75.02        51.88        15.32         0.76 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6688 
       39.48         0.23         0.20        47.77        52.21        18.77 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX 
       14.96        22.52        32.61        38.27        10.72        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       23.70        14.76        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
        6.67        11.54         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       17.42         6.54        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
      172.77         4.01        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
       17.29        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63         0.49        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 
        5.33        35.47         3.72        11.28         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        9.40         0.10        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 
        0.46         2.50         5.56        13.78        29.59        34.19 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
        5.33        16.93        16.14        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        69.27        35.44        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 
       31.63        12.76        28.87        20.71        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        5.88         7.96         7.59         0.23        10.42        13.25 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V 
       19.20         3.45         2.37         4.41        15.16        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 
       88.83        94.03        32.65        30.87         5.46        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        26.93        23.51        19.99         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-TM-A7C5 TCGA-TM-A7CA 
       10.39        99.06        30.05        31.59        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        21.37        19.69         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU 
       36.69        33.73        31.20        30.05        26.14        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10         7.89        39.16        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A 
       23.21         8.05        51.06        13.32        43.96        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 
        4.73        18.35        23.18        10.59        20.71        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        77.65        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16        90.58        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       18.31         6.87        15.09         6.54        19.86         8.35 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 
        6.02        19.73        26.43        25.05         5.49        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 
       89.72        22.72        51.32        16.96        27.02        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       11.67        17.65        23.18        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.93        17.72        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 
       10.55        47.11        11.34         9.27        16.21        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.32        15.45        20.32         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       47.61         6.94         3.98        33.67        12.95        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19        10.82        11.80         3.42        56.91        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 
       19.66         3.29        13.12         4.47         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       88.14        20.25         3.65        73.84        27.22        44.58 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 
       15.42        10.42         4.67         7.40         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        8.42         7.40        11.84         0.53        15.02         0.72 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       19.82        13.64        20.42        48.69        10.82         9.01 
TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        0.26         9.57         3.16        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        9.80        23.57        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 
       16.57        20.78        26.76        23.93         4.04        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32        13.61         1.08         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-6390 
       30.64         5.95        16.64         5.98         4.37         5.39 
TCGA-06-6693 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
      120.56        22.68         4.18       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
       12.23        14.93        18.02        15.35        13.97         0.72 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
       12.56        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       12.99        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       15.06        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       91.76        18.48        10.62        27.78         8.94        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
      127.59         5.82         7.59        33.21        15.98        12.23 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 
       15.85         9.11        14.53         3.98         2.24        11.24 
TCGA-14-0813 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        1.35        19.30         0.79        13.78        50.53        19.10 
TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 
       26.07        11.77        21.90         0.66        10.75         9.07 
TCGA-19-1388 TCGA-19-1389 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
       12.95         4.64         5.49         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77        31.27        23.44        11.01         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
       12.76         5.42         7.36        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                          0.23                           0.03 
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                        156.23                         211.17 
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                         16.80                          15.91 
[1] "0.2 - 156.2 (16.8)" "0.0 - 211.2 (15.9)"
[1] "hr=" "1.2"
D56V2, continuous
D56V3, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.1) MUTATED   104  72
  DEL PEAK 26(11P15.1) WILD-TYPE 469 440
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.1) MUTATED    104   72
  DEL PEAK 26(11P15.1) WILD-TYPE  469  440
                        clus
vv                       DEL PEAK 26(11P15.1) MUTATED
  BRAIN                                           104
  CENTRAL NERVOUS SYSTEM                           72
                        clus
vv                       DEL PEAK 26(11P15.1) WILD-TYPE
  BRAIN                                             469
  CENTRAL NERVOUS SYSTEM                            440
[1] 2 2
[1] FALSE
D56V4, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.1) MUTATED    86  90
  DEL PEAK 26(11P15.1) WILD-TYPE 367 542
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.1) MUTATED     86   90
  DEL PEAK 26(11P15.1) WILD-TYPE  367  542
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  FEMALE                           86                            367
  MALE                             90                            542
[1] 2 2
[1] FALSE
D56V5, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.1) MUTATED    30 136
  DEL PEAK 26(11P15.1) WILD-TYPE 228 634
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.1) MUTATED     30  136
  DEL PEAK 26(11P15.1) WILD-TYPE  228  634
     clus
vv    DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  NO                            30                            228
  YES                          136                            634
[1] 2 2
[1] FALSE
D56V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 26(11P15.1) MUTATED            43                             5
  DEL PEAK 26(11P15.1) WILD-TYPE         151                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 26(11P15.1) MUTATED                 15                14
  DEL PEAK 26(11P15.1) WILD-TYPE              114               175
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 26(11P15.1) MUTATED                     5
  DEL PEAK 26(11P15.1) WILD-TYPE                  13
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 26(11P15.1) MUTATED                                94
  DEL PEAK 26(11P15.1) WILD-TYPE                             431
D56V7, multiclass
                                 clus
vv                                DEL PEAK 26(11P15.1) MUTATED
  ASTROCYTOMA                                               43
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          15
  OLIGODENDROGLIOMA                                         14
  TREATED PRIMARY GBM                                        5
  UNTREATED PRIMARY (DE NOVO) GBM                           94
                                 clus
vv                                DEL PEAK 26(11P15.1) WILD-TYPE
  ASTROCYTOMA                                                151
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                           114
  OLIGODENDROGLIOMA                                          175
  TREATED PRIMARY GBM                                         13
  UNTREATED PRIMARY (DE NOVO) GBM                            431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 26(11P15.1) MUTATED                                  0     1
  DEL PEAK 26(11P15.1) WILD-TYPE                                1    20
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 26(11P15.1) MUTATED                          13   159
  DEL PEAK 26(11P15.1) WILD-TYPE                        58   800
D56V8, multiclass
                                  clus
vv                                 DEL PEAK 26(11P15.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       1
  BLACK OR AFRICAN AMERICAN                                  13
  WHITE                                                     159
                                  clus
vv                                 DEL PEAK 26(11P15.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        20
  BLACK OR AFRICAN AMERICAN                                    58
  WHITE                                                       800
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V9, binary
                                cls
clus                               0   1
  DEL PEAK 26(11P15.1) MUTATED     5 150
  DEL PEAK 26(11P15.1) WILD-TYPE  39 771
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.1) MUTATED      5  150
  DEL PEAK 26(11P15.1) WILD-TYPE   39  771
                        clus
vv                       DEL PEAK 26(11P15.1) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                          150
                        clus
vv                       DEL PEAK 26(11P15.1) WILD-TYPE
  HISPANIC OR LATINO                                 39
  NOT HISPANIC OR LATINO                            771
[1] 2 2
[1] FALSE

Clustering(57) Variable = DEL PEAK 27(11P11.2) MUTATION ANALYSIS
D57V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 27(11P11.2) MUTATED    46 112
  DEL PEAK 27(11P11.2) WILD-TYPE 434 486
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           158                            920 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           112                            486 
$`DEL PEAK 27(11P11.2) MUTATED`
TCGA-19-A6J4 TCGA-CS-6665 TCGA-06-1806 TCGA-06-5856 TCGA-06-A7TK TCGA-06-A7TL 
        3.98        51.55        15.32         3.75        14.60        17.72 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 TCGA-14-0865 
        6.77        44.02        14.53        11.97         6.21        16.50 
TCGA-14-1454 TCGA-14-1459 TCGA-14-1794 TCGA-14-1821 TCGA-14-1823 TCGA-14-3477 
       30.18        12.43         0.99        17.79        17.85         3.78 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1392 TCGA-19-2623 TCGA-19-5951 TCGA-19-5959 
       29.03        25.38         3.65         7.53         8.02        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-27-1830 TCGA-27-2521 TCGA-28-2509 TCGA-32-1976 
       14.96        13.87         5.06        16.77         4.77         0.49 
TCGA-32-1986 TCGA-32-2615 TCGA-32-2632 TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 
       12.69        15.95         8.84         3.72        10.85        11.84 
TCGA-74-6584 TCGA-76-4934 TCGA-76-6286 TCGA-DB-5277 TCGA-DH-5140 TCGA-DH-5142 
        7.50         2.53        20.98        50.86        19.96        63.88 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-6396 TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7007 
       17.46        13.71        75.16       114.08        11.47        62.96 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-8158 TCGA-DU-8165 TCGA-DU-A5TR 
       14.99       117.40        90.77         5.10        19.13        29.85 
TCGA-DU-A5TS TCGA-DU-A7TJ TCGA-E1-5304 TCGA-E1-A7YE TCGA-E1-A7YI TCGA-E1-A7YL 
       31.69         0.56        41.13        29.13         3.65        16.18 
TCGA-E1-A7YV TCGA-FG-5963 TCGA-FG-6689 TCGA-FG-A4MW TCGA-HT-7470 TCGA-HT-7477 
       32.45        25.48        14.93        18.38        40.11        24.26 
TCGA-HT-7686 TCGA-HT-7693 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 
       42.74        17.52         3.72        31.43        63.55        37.87 
TCGA-HT-8111 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A61B 
        0.23        15.72        20.22         2.70         1.81        17.52 
TCGA-HW-8319 TCGA-IK-7675 TCGA-P5-A5F6 TCGA-QH-A65S TCGA-RY-A83Z TCGA-S9-A6WM 
       39.75        19.00         1.28         2.53         9.90        19.86 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84I TCGA-TM-A84J TCGA-TQ-A7RM 
       18.71        20.48        54.77        28.08        24.16        36.69 
TCGA-TQ-A7RR TCGA-WY-A859 TCGA-02-0010 TCGA-02-0024 TCGA-02-0033 TCGA-02-0047 
       25.87        39.88        35.41        53.10         2.83        14.73 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 
        3.22        12.59         2.50         9.57        28.70        10.19 
TCGA-02-0075 TCGA-02-0084 TCGA-02-0086 TCGA-02-0087 TCGA-02-0113 TCGA-02-0114 
       20.84        12.62         8.81        57.76        92.65        99.98 
TCGA-02-0115 TCGA-02-0266 TCGA-02-0281 TCGA-02-0332 TCGA-02-0456 TCGA-02-2466 
       15.65        17.72         3.98        25.71         3.35        16.80 
TCGA-06-0128 TCGA-06-0159 TCGA-06-0166 TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 
       22.72         9.44         5.85         3.22         4.18        69.90 
TCGA-06-0188 TCGA-06-0192 TCGA-06-0197 TCGA-06-0216 TCGA-06-0238 TCGA-06-0409 
       44.58        38.96         5.56        24.16        13.32        72.36 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 TCGA-06-0686 TCGA-06-0876 TCGA-06-1086 
        4.70        35.11         2.10        14.20        46.19         6.84 
TCGA-06-1800 TCGA-06-1805 TCGA-06-2570 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 
       26.79        33.90        31.50         7.79         7.36        37.84 
TCGA-08-0353 TCGA-08-0510 TCGA-12-0616 TCGA-12-0619 TCGA-12-0670 TCGA-12-0772 
        8.42         4.27        14.73        34.92        25.97        53.85 
TCGA-12-0819 TCGA-12-0822 TCGA-12-0827 TCGA-12-1099 TCGA-14-0817 TCGA-14-0867 
       24.79        23.51        38.76         4.14         5.39         2.04 
TCGA-14-0871 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0850 TCGA-19-1387 
       28.93        53.19        13.28         3.91        16.37         5.95 
TCGA-26-5133 TCGA-28-5216 
       14.86        13.64 

$`DEL PEAK 27(11P11.2) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 
        1.48        46.88        46.72        31.82        42.05        62.01 
TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N 
       17.16        23.90        20.09        17.82        20.45        18.64 
TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 
       21.40        45.60        42.77        59.38        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        2.73         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96        26.79         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 
        3.12         2.56        15.35        21.73        15.65        25.68 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       14.73        59.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       34.92        14.93         3.22         2.04        15.12         0.95 
TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       23.05        13.78         3.25         2.89        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 
        7.10         1.15         0.92        40.96         6.67         1.97 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-16-0848 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       17.59         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1786 
       13.97         6.41         8.61        14.27         3.39         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        24.23         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
       17.19        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 
       14.07        17.79        28.54        10.03         9.73         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1831 
        9.37         9.40         8.88        18.97        19.33        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.76        18.08        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 
        0.66         6.74        15.39        21.07         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       20.78        15.02        22.78        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       19.86        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R 
        0.99         4.44         0.20        15.12        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        1.45        25.58         3.45        20.91         4.34        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        8.22         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       72.92        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5143 TCGA-DH-5144 
       11.24        17.88        30.74        16.18        46.06        24.59 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 
      211.17        52.11        22.42        49.02        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7008 TCGA-DU-7009 
       16.83        94.52         7.96         2.40       156.23       154.36 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
      105.21         6.54         8.84        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TT 
       21.40        16.96        15.48        14.17        33.27        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
       20.98        22.29        11.41        26.76        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       38.89        50.14        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YJ 
       78.21        95.57       130.78        14.30        93.21        19.46 
TCGA-E1-A7YK TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       12.43        21.30        75.02        51.88        15.32         0.76 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
       39.48         0.23         0.20        47.77        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       18.77        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       16.01        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       22.26        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10         6.67        11.54         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75        17.42         6.54         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 
        0.16        16.24         0.76        44.68         6.05         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7694 
       31.69        14.96         0.10         0.10         2.96         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        5.33        35.47        11.28         1.64        16.24         9.40 
TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
        0.10        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        2.50         5.56        13.78        29.59        34.19        28.27 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61C TCGA-HT-A74H 
        5.33        16.93        16.14        16.83        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8321 
       41.49        68.32        69.27        35.44        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X 
       24.92        31.63        12.76        28.87        20.71        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W 
        9.44         5.88         7.96         7.59         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
       15.16        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23        13.41         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        5.46        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       98.63        31.59        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84L 
       24.92        16.18        59.05        40.64        30.44        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV 
       33.73        31.20        30.05        26.14        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A 
       23.21         8.05        51.06        13.32        43.96        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 
        4.73        18.35        23.18        10.59        20.71        82.59 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        87.06        77.65        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16        90.58        14.14         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       18.31         6.87        15.09         6.54        19.86         8.35 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 
        6.02        19.73        26.43        25.05         5.49        27.25 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       89.72        22.72        51.32        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0116 TCGA-02-0258 
       65.00        11.67        17.65        23.18        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.93        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 
       47.11        11.34         9.27        16.21        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        33.67        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       26.70        24.23        11.90         0.20        10.29         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
       10.82        11.80         3.42        56.91        10.65        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
        3.29        13.12         4.47         4.04        91.00        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
       20.25         3.65        73.84        27.22        15.42        10.42 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        4.67         7.40         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
       11.84         0.53        15.02         0.72        19.82        13.64 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 
       20.42        48.69        10.82         9.01         0.26         9.57 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
        3.16        12.62         5.75         5.75         9.80        23.57 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       43.46         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 
       23.93         4.04        11.84        15.32        13.61         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-6390 TCGA-06-6693 
       16.64         5.98         4.37         0.43         5.39       120.56 
TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       12.16         9.80        29.23        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       14.93        18.02        15.35        13.97         0.72        12.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       42.15        11.08        19.59        58.68        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 
        4.80         7.27        15.98        18.41         7.56        12.99 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 
       10.45         7.59        94.78         0.10        38.17        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 
       12.13         3.65        20.38        28.41        15.06        43.23 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 
        7.63         9.73        14.93        14.86        91.76        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       10.62        27.78         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-1037 
       14.53         3.98         2.24        11.24         1.35        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0849 TCGA-19-0955 
        0.79        13.78        50.53        19.10        26.07        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 
       21.90         0.66        10.75         9.07        12.95         4.64 
TCGA-26-1442 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       31.33         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       31.27        23.44        11.01         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        5.42         7.36        11.38         5.42         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                          0.23                           0.03 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                        117.40                         211.17 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                        16.435                         15.965 
[1] "0.2 - 117.4 (16.4)" "0.0 - 211.2 (16.0)"
[1] "hr=" "1.4"
D57V2, continuous
D57V3, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P11.2) MUTATED   105  54
  DEL PEAK 27(11P11.2) WILD-TYPE 468 458
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P11.2) MUTATED    105   54
  DEL PEAK 27(11P11.2) WILD-TYPE  468  458
                        clus
vv                       DEL PEAK 27(11P11.2) MUTATED
  BRAIN                                           105
  CENTRAL NERVOUS SYSTEM                           54
                        clus
vv                       DEL PEAK 27(11P11.2) WILD-TYPE
  BRAIN                                             468
  CENTRAL NERVOUS SYSTEM                            458
[1] 2 2
[1] FALSE
D57V4, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P11.2) MUTATED    73  86
  DEL PEAK 27(11P11.2) WILD-TYPE 380 546
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P11.2) MUTATED     73   86
  DEL PEAK 27(11P11.2) WILD-TYPE  380  546
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  FEMALE                           73                            380
  MALE                             86                            546
[1] 2 2
[1] FALSE
D57V5, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P11.2) MUTATED    23 126
  DEL PEAK 27(11P11.2) WILD-TYPE 235 644
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P11.2) MUTATED     23  126
  DEL PEAK 27(11P11.2) WILD-TYPE  235  644
     clus
vv    DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  NO                            23                            235
  YES                          126                            644
[1] 2 2
[1] FALSE
D57V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 27(11P11.2) MUTATED            30                             5
  DEL PEAK 27(11P11.2) WILD-TYPE         164                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 27(11P11.2) MUTATED                 13                11
  DEL PEAK 27(11P11.2) WILD-TYPE              116               178
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 27(11P11.2) MUTATED                     6
  DEL PEAK 27(11P11.2) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 27(11P11.2) MUTATED                                94
  DEL PEAK 27(11P11.2) WILD-TYPE                             431
D57V7, multiclass
                                 clus
vv                                DEL PEAK 27(11P11.2) MUTATED
  ASTROCYTOMA                                               30
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          13
  OLIGODENDROGLIOMA                                         11
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                           94
                                 clus
vv                                DEL PEAK 27(11P11.2) WILD-TYPE
  ASTROCYTOMA                                                164
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                           116
  OLIGODENDROGLIOMA                                          178
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 27(11P11.2) MUTATED                                  0     2
  DEL PEAK 27(11P11.2) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 27(11P11.2) MUTATED                          13   140
  DEL PEAK 27(11P11.2) WILD-TYPE                        58   819
D57V8, multiclass
                                  clus
vv                                 DEL PEAK 27(11P11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  13
  WHITE                                                     140
                                  clus
vv                                 DEL PEAK 27(11P11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    58
  WHITE                                                       819
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V9, binary
                                cls
clus                               0   1
  DEL PEAK 27(11P11.2) MUTATED     7 132
  DEL PEAK 27(11P11.2) WILD-TYPE  37 789
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11P11.2) MUTATED      7  132
  DEL PEAK 27(11P11.2) WILD-TYPE   37  789
                        clus
vv                       DEL PEAK 27(11P11.2) MUTATED
  HISPANIC OR LATINO                                7
  NOT HISPANIC OR LATINO                          132
                        clus
vv                       DEL PEAK 27(11P11.2) WILD-TYPE
  HISPANIC OR LATINO                                 37
  NOT HISPANIC OR LATINO                            789
[1] 2 2
[1] FALSE

Clustering(58) Variable = DEL PEAK 28(12P13.1) MUTATION ANALYSIS
D58V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 28(12P13.1) MUTATED    38  70
  DEL PEAK 28(12P13.1) WILD-TYPE 442 528
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                           108                            970 
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                            70                            528 
$`DEL PEAK 28(12P13.1) MUTATED`
TCGA-CS-6665 TCGA-06-5415 TCGA-06-5859 TCGA-06-6697 TCGA-06-6700 TCGA-12-1598 
       51.55         8.55         4.57        12.85         4.77        15.65 
TCGA-12-1600 TCGA-12-3646 TCGA-14-0783 TCGA-14-1451 TCGA-14-1794 TCGA-14-3477 
       14.73        44.02         6.21        23.11         0.99         3.78 
TCGA-16-1055 TCGA-19-0960 TCGA-19-1390 TCGA-19-2623 TCGA-19-4065 TCGA-26-5132 
       10.29         8.61        25.38         7.53         7.04         9.40 
TCGA-26-5136 TCGA-27-1836 TCGA-32-1978 TCGA-32-2494 TCGA-32-4208 TCGA-76-4935 
       18.97        30.05        15.85        20.78        21.14        36.85 
TCGA-76-6193 TCGA-76-6664 TCGA-CS-4943 TCGA-DB-5279 TCGA-DB-A4XH TCGA-DU-5855 
        2.70        36.20        36.36        44.52        31.63         6.81 
TCGA-DU-6403 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7299 TCGA-DU-7304 TCGA-DU-A6S6 
       11.64         2.40        62.96        44.02        23.31        95.11 
TCGA-DU-A76R TCGA-E1-5302 TCGA-E1-A7YI TCGA-E1-A7YS TCGA-E1-A7YV TCGA-FG-5965 
       21.30        50.14         3.65        15.32        32.45        36.82 
TCGA-FG-6690 TCGA-FG-A6J3 TCGA-FG-A711 TCGA-HT-7470 TCGA-HT-7879 TCGA-HT-8106 
       42.54        22.26        48.69        40.11         3.68         0.10 
TCGA-HT-8108 TCGA-HT-A5R7 TCGA-HW-A5KM TCGA-P5-A5EW TCGA-P5-A72X TCGA-S9-A6U1 
        2.50        20.22        20.71         6.71        13.25        25.81 
TCGA-S9-A6UA TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R4 TCGA-S9-A89V 
        5.85        20.02        18.54        10.39        30.05        18.71 
TCGA-TM-A84I TCGA-TQ-A7RF TCGA-02-0014 TCGA-02-0026 TCGA-02-0034 TCGA-02-0038 
       28.08        21.37        82.59        24.59        14.14        10.72 
TCGA-02-0055 TCGA-02-0071 TCGA-02-0075 TCGA-02-0085 TCGA-02-0087 TCGA-02-0104 
        2.50         5.49        20.84        51.32        57.76        65.00 
TCGA-02-0113 TCGA-06-0129 TCGA-06-0147 TCGA-06-0149 TCGA-06-0159 TCGA-06-0175 
       92.65        33.67        17.79         8.61         9.44         4.04 
TCGA-06-0190 TCGA-06-0195 TCGA-06-0197 TCGA-06-0221 TCGA-06-0237 TCGA-06-0414 
       10.42         7.40         5.56        19.82        13.64        35.11 
TCGA-06-0646 TCGA-06-1801 TCGA-06-2570 TCGA-06-6390 TCGA-06-6694 TCGA-08-0245 
        5.75        11.84        31.50         5.39         7.36        37.84 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0359 TCGA-08-0386 TCGA-08-0510 TCGA-08-0514 
       12.16         9.80         3.39        18.02         4.27        11.08 
TCGA-08-0518 TCGA-12-0619 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-16-0849 
       19.33        34.92         5.39         2.04        28.93        26.07 
TCGA-16-0850 TCGA-19-1385 TCGA-19-1388 TCGA-28-2514 TCGA-28-5204 TCGA-76-6283 
       16.37        10.75        12.95         5.26        14.93         5.42 

$`DEL PEAK 28(12P13.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 
        6.71         2.73         3.75         6.15         5.23         8.32 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 
        4.77         1.55         4.96        26.79         1.87         3.12 
TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 
        2.56        14.60        17.72        15.35        21.73        25.68 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
        6.77        59.77        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.92        14.53        14.93         3.22         2.04        15.12 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
       11.97         0.95        23.05        13.78         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       32.05        58.78         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
       40.96         6.67        12.43         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.17        17.49         7.96         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       17.59        29.03         4.57        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 
       13.97         6.41        14.27         3.39         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5135 TCGA-26-A7UX 
       13.87         9.73         7.13         9.37         8.88        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        16.77        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.21         8.35         7.63         8.48         1.22         1.55 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 
        2.83         0.13         0.66         6.74         4.77        15.39 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       21.07         0.49         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 
       12.69        14.86        16.93        12.23        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.84        22.78        25.18         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.50         4.80         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 
        3.65         9.17         2.53        16.70         3.29        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       18.64         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       43.89        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       72.92        50.86        91.13        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        39.78        37.45        33.57        72.95 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 
       17.46         6.74        13.38         8.45       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 
        7.96        94.32        18.94        25.91        60.30        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T6 
       21.57        20.98        22.29        11.41        26.76        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
       38.89         0.56        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO 
       93.21        19.46        12.43        16.18        21.30        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
       51.88         0.76        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-6692 
       25.48        52.21        18.77        14.93        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        17.88        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       13.68        14.24        16.01        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       21.53        15.02        16.44        28.54        10.78        36.66 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 
        5.72        27.52         0.10         6.67        11.54         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
       37.15         0.33         0.13         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 
        0.10        37.87        33.01        12.23         6.25         0.46 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA 
       15.72         0.23        26.04         0.13         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       31.63        12.76        28.87        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72Z 
        7.96         7.59         1.28         0.23        10.42        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50        16.70        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       24.39        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 
       36.13         7.92        26.93        23.51        19.99         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
        2.04        20.68        15.06        28.37        27.16       169.84 
TCGA-S9-A7R3 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       99.06        98.63        31.59        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RH 
       25.38        18.61        14.93        23.80        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        45.93        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        87.06        77.65        20.12        53.10        42.74 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0039 TCGA-02-0043 
       12.16        90.58         2.83         3.62        10.52        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
        6.87        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       28.70        25.05        10.19        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
       12.62         8.81        16.96         3.48        27.02        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.18        99.98        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.93        17.72        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.90         7.73        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        22.72        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
        2.33        20.09        10.09        19.46        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 
       13.94        10.45         3.19        10.82        11.80         3.42 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
       38.96         4.67         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0238 
       11.84         0.53        15.02        24.16         0.72        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        48.69        10.82         9.01         0.26        72.36 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0648 
        4.70         9.57         3.16        12.62         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.70         0.92        43.46        46.19         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
        4.04        26.79        15.32        13.61        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-6389 TCGA-06-6693 
       16.64         5.98         4.37         0.43         7.79       120.56 
TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       29.23        65.33         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       31.10        37.58        22.29        12.23        14.93        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 
       13.97         0.72        12.56        42.15        19.59        58.68 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.73        12.99        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.41        15.06        53.85        43.23         7.63         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.94        20.58       127.59 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82         7.59        33.21        15.98        12.23        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 
        9.11        14.53         3.98         4.14         2.24        11.24 
TCGA-14-0813 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        1.35        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       53.19        13.28         3.91        11.77        21.90         0.66 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        9.07         5.95         4.64        31.33        14.86         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        1.58         7.92         2.33         7.30        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
        5.16        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        3.75         1.61        17.72        26.30 

  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                         95.11                         211.17 
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                        15.750                         15.995 
[1] "0.1 - 95.1 (15.8)"  "0.0 - 211.2 (16.0)"
[1] "hr=" "1.3"
D58V2, continuous
D58V3, binary
                                cls
clus                               0   1
  DEL PEAK 28(12P13.1) MUTATED    72  38
  DEL PEAK 28(12P13.1) WILD-TYPE 501 474
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.1) MUTATED     72   38
  DEL PEAK 28(12P13.1) WILD-TYPE  501  474
                        clus
vv                       DEL PEAK 28(12P13.1) MUTATED
  BRAIN                                            72
  CENTRAL NERVOUS SYSTEM                           38
                        clus
vv                       DEL PEAK 28(12P13.1) WILD-TYPE
  BRAIN                                             501
  CENTRAL NERVOUS SYSTEM                            474
[1] 2 2
[1] FALSE
D58V4, binary
                                cls
clus                               0   1
  DEL PEAK 28(12P13.1) MUTATED    49  61
  DEL PEAK 28(12P13.1) WILD-TYPE 404 571
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.1) MUTATED     49   61
  DEL PEAK 28(12P13.1) WILD-TYPE  404  571
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  FEMALE                           49                            404
  MALE                             61                            571
[1] 2 2
[1] FALSE
D58V5, binary
                                cls
clus                               0   1
  DEL PEAK 28(12P13.1) MUTATED    20  84
  DEL PEAK 28(12P13.1) WILD-TYPE 238 686
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.1) MUTATED     20   84
  DEL PEAK 28(12P13.1) WILD-TYPE  238  686
     clus
vv    DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  NO                            20                            238
  YES                           84                            686
[1] 2 2
[1] FALSE
D58V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 28(12P13.1) MUTATED            20                             2
  DEL PEAK 28(12P13.1) WILD-TYPE         174                            28
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 28(12P13.1) MUTATED                  9                 9
  DEL PEAK 28(12P13.1) WILD-TYPE              120               180
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 28(12P13.1) MUTATED                     1
  DEL PEAK 28(12P13.1) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 28(12P13.1) MUTATED                                69
  DEL PEAK 28(12P13.1) WILD-TYPE                             456
D58V7, multiclass
                                 clus
vv                                DEL PEAK 28(12P13.1) MUTATED
  ASTROCYTOMA                                               20
  GLIOBLASTOMA MULTIFORME (GBM)                              2
  OLIGOASTROCYTOMA                                           9
  OLIGODENDROGLIOMA                                          9
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           69
                                 clus
vv                                DEL PEAK 28(12P13.1) WILD-TYPE
  ASTROCYTOMA                                                174
  GLIOBLASTOMA MULTIFORME (GBM)                               28
  OLIGOASTROCYTOMA                                           120
  OLIGODENDROGLIOMA                                          180
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            456
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 28(12P13.1) MUTATED                                  0     2
  DEL PEAK 28(12P13.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 28(12P13.1) MUTATED                           3   101
  DEL PEAK 28(12P13.1) WILD-TYPE                        68   858
D58V8, multiclass
                                  clus
vv                                 DEL PEAK 28(12P13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   3
  WHITE                                                     101
                                  clus
vv                                 DEL PEAK 28(12P13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    68
  WHITE                                                       858
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V9, binary
                                cls
clus                               0   1
  DEL PEAK 28(12P13.1) MUTATED     1  95
  DEL PEAK 28(12P13.1) WILD-TYPE  43 826
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.1) MUTATED      1   95
  DEL PEAK 28(12P13.1) WILD-TYPE   43  826
                        clus
vv                       DEL PEAK 28(12P13.1) MUTATED
  HISPANIC OR LATINO                                1
  NOT HISPANIC OR LATINO                           95
                        clus
vv                       DEL PEAK 28(12P13.1) WILD-TYPE
  HISPANIC OR LATINO                                 43
  NOT HISPANIC OR LATINO                            826
[1] 2 2
[1] FALSE

Clustering(59) Variable = DEL PEAK 29(12Q12) MUTATION ANALYSIS
D59V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 29(12Q12) MUTATED    66  80
  DEL PEAK 29(12Q12) WILD-TYPE 414 518
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                         146                          932 
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                          80                          518 
$`DEL PEAK 29(12Q12) MUTATED`
TCGA-CS-6665 TCGA-DH-A66B TCGA-DU-A76O TCGA-06-5856 TCGA-06-A7TL TCGA-12-1600 
       51.55        42.05        17.16         3.75        17.72        14.73 
TCGA-12-3646 TCGA-14-0740 TCGA-14-0783 TCGA-14-1451 TCGA-14-1453 TCGA-14-1458 
       44.02        11.97         6.21        23.11         1.15         6.67 
TCGA-14-1794 TCGA-14-1821 TCGA-14-3477 TCGA-16-1056 TCGA-19-1390 TCGA-19-2623 
        0.99        17.79         3.78        14.01        25.38         7.53 
TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-5132 TCGA-26-5136 TCGA-28-1746 
        7.04        14.96        10.03         9.40        18.97         0.20 
TCGA-28-1756 TCGA-32-1978 TCGA-32-2494 TCGA-32-4208 TCGA-32-4210 TCGA-41-2571 
        2.83        15.85        20.78        21.14         3.72         0.85 
TCGA-41-5651 TCGA-76-4935 TCGA-76-6193 TCGA-RR-A6KA TCGA-CS-4941 TCGA-DB-5275 
       15.12        36.85         2.70         6.28         7.69        47.93 
TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A75K TCGA-DU-5871 
       50.86        44.52        33.57        31.63        12.10        18.94 
TCGA-DU-6401 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-8166 
       87.45         2.40        62.96       156.23        14.99        16.96 
TCGA-DU-8167 TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S6 TCGA-DU-A76R TCGA-DU-A7TI 
       15.48        26.17        33.96        95.11        21.30        38.89 
TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-A7YH TCGA-E1-A7YK TCGA-E1-A7YS TCGA-E1-A7Z4 
       50.14        41.13        93.21        12.43        15.32       145.05 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-A4MX TCGA-FG-A6J3 TCGA-HT-7470 TCGA-HT-7474 
       14.93        42.54        18.71        22.26        40.11         3.75 
TCGA-HT-7478 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7884 TCGA-HT-7902 
        6.38        42.74        31.69         0.10        11.28        31.43 
TCGA-HT-8018 TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8563 TCGA-HT-A5R7 TCGA-HT-A618 
       37.87         0.10         2.50        28.27        20.22        16.83 
TCGA-HT-A61B TCGA-P5-A5EW TCGA-P5-A5EZ TCGA-P5-A5F4 TCGA-P5-A72W TCGA-P5-A72X 
       17.52         6.71         2.30         7.59        10.42        13.25 
TCGA-P5-A731 TCGA-S9-A6TV TCGA-S9-A6U1 TCGA-S9-A6UA TCGA-S9-A6WQ TCGA-S9-A7QX 
        9.01        18.77        25.81         5.85        14.07        18.54 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-TM-A84I TCGA-TQ-A7RR TCGA-VM-A8C8 
       30.05        98.63        18.71        28.08        25.87        45.93 
TCGA-VM-A8CB TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85B TCGA-02-0034 TCGA-02-0046 
        0.10        13.32        39.88        45.80        14.14         6.87 
TCGA-02-0055 TCGA-02-0071 TCGA-02-0075 TCGA-02-0084 TCGA-02-0087 TCGA-02-0102 
        2.50         5.49        20.84        12.62        57.76        27.02 
TCGA-02-0104 TCGA-02-0113 TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 TCGA-06-0159 
       65.00        92.65        20.09        17.79         8.61         9.44 
TCGA-06-0173 TCGA-06-0175 TCGA-06-0184 TCGA-06-0190 TCGA-06-0195 TCGA-06-0197 
        4.47         4.04        69.90        10.42         7.40         5.56 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0410 TCGA-06-0414 TCGA-06-0875 TCGA-06-6389 
       19.82        13.64         4.70        35.11        43.46         7.79 
TCGA-06-6390 TCGA-06-6694 TCGA-08-0245 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 
        5.39         7.36        37.84        12.16         9.80        65.33 
TCGA-08-0386 TCGA-08-0510 TCGA-08-0514 TCGA-12-0619 TCGA-12-0662 TCGA-14-0813 
       18.02         4.27        11.08        34.92        38.17         1.35 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-16-0849 TCGA-16-0850 TCGA-19-0957 
        5.39         2.04        28.93        26.07        16.37        21.90 
TCGA-19-1388 TCGA-76-6660 
       12.95         3.75 

$`DEL PEAK 29(12Q12) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-7300 
        1.48         3.98        46.88        46.72        31.82        62.01 
TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 
       23.90        20.09        17.82        20.45        18.64        21.40 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
       45.60        42.77        59.38        15.32        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        2.73         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        4.77         1.55         4.77         4.96        26.79         1.87 
TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 
        3.12         2.56        14.60        15.35        21.73        15.65 
TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.68         6.77        59.77        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       12.69        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
       15.12         0.95        23.05        13.78         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78         7.10        30.18         0.92        40.96 
TCGA-14-1459 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
       12.43         1.97        17.85         7.63         5.88         7.17 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
       17.49         7.96         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 
       10.29         9.14        21.24        13.97         6.41         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       14.27         3.39         3.65         7.17        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         4.87         1.08         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       24.23         7.00         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73        12.10         1.78        22.49        14.07        16.80 
TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       17.79        28.54        13.87         9.73         7.13         9.37 
TCGA-26-5135 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        8.88        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        16.77        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
       15.78         2.53         9.21         8.35         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.22         1.55         0.13         0.66         6.74         4.77 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       15.39        21.07         0.49         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 
        4.67        12.69        14.86        16.93        12.23        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 
       15.95         8.84        22.78        25.18        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85        19.23        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
        4.44        11.84         0.20        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4934 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        2.53        16.70         3.29        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
        5.92        20.55       117.50        43.89        36.36        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.26        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       26.76        37.38        46.95        48.30        49.94        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 
      122.73        81.96        75.25        72.92        91.13        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
       78.28        46.42        18.84        30.21        39.78        37.45 
TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75L 
       27.45        27.81        29.23        14.40        18.51        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       17.88        30.74        16.18        19.96        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 
       75.16        46.06        65.75         1.22         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
       11.47       154.36       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       18.94        44.02        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       19.13        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       24.99        25.55        21.57        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       26.76        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 
        7.50        44.42         0.56        67.46        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ 
        3.65        19.46        16.18        21.30        75.02        51.88 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       52.21        36.82        18.77        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       10.72        18.38        23.70        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       16.44        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10         6.67        11.54         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 
       16.54        17.42         6.54        24.26        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7689 
       16.24         0.76        44.68         6.05         0.10        14.96 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
        3.72         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 
       33.01        12.23         6.25         0.46         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
        0.23        29.59        34.19        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
        0.13         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.93         1.81        16.14        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        45.44        41.49 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       68.32        69.27        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       24.92        31.63        12.76        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40        14.40         0.23         7.99         2.37         9.44 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72Z TCGA-P5-A730 
        5.88         7.96         1.28         0.23        11.64        10.95 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW 
        2.07        19.59        30.67        62.17        87.12        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 
       40.93        35.38        36.82        24.39        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       35.15        98.24        95.93       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.61        18.64        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 
       28.37        27.16       169.84        10.39        99.06        31.59 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J 
       24.92        16.18        59.05        40.64        30.44        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA 
       33.93        61.41        26.99        31.36        43.20        13.51 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85C 
       23.21         8.05        51.06        43.96        43.40        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       37.71        20.81         7.63        11.77         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       23.18        10.59        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       87.06        77.65        20.12        53.10        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16        90.58         2.83         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       18.31        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       28.70        25.05        10.19        27.25        89.72        22.72 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0106 TCGA-02-0107 
       51.32         8.81        16.96         3.48        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.72        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        33.67        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        2.33        10.09        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
       10.45         3.19        10.82        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 
       10.65         5.85        19.66         3.29        13.12         3.22 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
       91.00         4.18        88.14        20.25         3.65        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0194 TCGA-06-0201 
       27.22        44.58        15.42        38.96         4.67         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       24.16         0.72        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
        9.01         0.26        72.36         9.57         3.16        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       23.93         6.84         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-6693 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        0.43        31.50       120.56        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 
        1.74         8.42        25.71        29.23         1.28         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       12.23        14.93        15.35        13.97         0.72        12.56 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       42.15        19.59        58.68        19.33        10.75         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        7.27        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 
       10.45         7.59        94.78         0.10        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       12.13         3.65        20.38        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.79        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        4.14         2.24        11.24        19.30         0.79        13.78 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 
       50.53        19.10        53.19        13.28         3.91        11.77 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 
        0.66        10.75         9.07         5.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       14.86         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 
       12.76         5.42         7.36        11.38         5.42         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                      156.23                       211.17 
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                       16.60                        15.98 
[1] "0.1 - 156.2 (16.6)" "0.0 - 211.2 (16.0)"
[1] "hr=" "1"  
D59V2, continuous
D59V3, binary
                              cls
clus                             0   1
  DEL PEAK 29(12Q12) MUTATED    77  70
  DEL PEAK 29(12Q12) WILD-TYPE 496 442
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(12Q12) MUTATED     77   70
  DEL PEAK 29(12Q12) WILD-TYPE  496  442
                        clus
vv                       DEL PEAK 29(12Q12) MUTATED
  BRAIN                                          77
  CENTRAL NERVOUS SYSTEM                         70
                        clus
vv                       DEL PEAK 29(12Q12) WILD-TYPE
  BRAIN                                           496
  CENTRAL NERVOUS SYSTEM                          442
[1] 2 2
[1] FALSE
D59V4, binary
                              cls
clus                             0   1
  DEL PEAK 29(12Q12) MUTATED    63  84
  DEL PEAK 29(12Q12) WILD-TYPE 390 548
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(12Q12) MUTATED     63   84
  DEL PEAK 29(12Q12) WILD-TYPE  390  548
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  FEMALE                         63                          390
  MALE                           84                          548
[1] 2 2
[1] FALSE
D59V5, binary
                              cls
clus                             0   1
  DEL PEAK 29(12Q12) MUTATED    29 108
  DEL PEAK 29(12Q12) WILD-TYPE 229 662
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(12Q12) MUTATED     29  108
  DEL PEAK 29(12Q12) WILD-TYPE  229  662
     clus
vv    DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  NO                          29                          229
  YES                        108                          662
[1] 2 2
[1] FALSE
D59V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 29(12Q12) MUTATED            42                             4
  DEL PEAK 29(12Q12) WILD-TYPE         152                            26
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 29(12Q12) MUTATED                 16                12
  DEL PEAK 29(12Q12) WILD-TYPE              113               177
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 29(12Q12) MUTATED                     2
  DEL PEAK 29(12Q12) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 29(12Q12) MUTATED                                71
  DEL PEAK 29(12Q12) WILD-TYPE                             454
D59V7, multiclass
                                 clus
vv                                DEL PEAK 29(12Q12) MUTATED
  ASTROCYTOMA                                             42
  GLIOBLASTOMA MULTIFORME (GBM)                            4
  OLIGOASTROCYTOMA                                        16
  OLIGODENDROGLIOMA                                       12
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         71
                                 clus
vv                                DEL PEAK 29(12Q12) WILD-TYPE
  ASTROCYTOMA                                              152
  GLIOBLASTOMA MULTIFORME (GBM)                             26
  OLIGOASTROCYTOMA                                         113
  OLIGODENDROGLIOMA                                        177
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          454
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 29(12Q12) MUTATED                                  0     0
  DEL PEAK 29(12Q12) WILD-TYPE                                1    21
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 29(12Q12) MUTATED                           7   135
  DEL PEAK 29(12Q12) WILD-TYPE                        64   824
D59V8, multiclass
                                  clus
vv                                 DEL PEAK 29(12Q12) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     0
  BLACK OR AFRICAN AMERICAN                                 7
  WHITE                                                   135
                                  clus
vv                                 DEL PEAK 29(12Q12) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  64
  WHITE                                                     824
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V9, binary
                              cls
clus                             0   1
  DEL PEAK 29(12Q12) MUTATED     3 125
  DEL PEAK 29(12Q12) WILD-TYPE  41 796
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(12Q12) MUTATED      3  125
  DEL PEAK 29(12Q12) WILD-TYPE   41  796
                        clus
vv                       DEL PEAK 29(12Q12) MUTATED
  HISPANIC OR LATINO                              3
  NOT HISPANIC OR LATINO                        125
                        clus
vv                       DEL PEAK 29(12Q12) WILD-TYPE
  HISPANIC OR LATINO                               41
  NOT HISPANIC OR LATINO                          796
[1] 2 2
[1] FALSE

Clustering(60) Variable = DEL PEAK 30(12Q15) MUTATION ANALYSIS
D60V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 30(12Q15) MUTATED    60  81
  DEL PEAK 30(12Q15) WILD-TYPE 420 517
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                         141                          937 
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                          81                          517 
$`DEL PEAK 30(12Q15) MUTATED`
TCGA-DH-A66B TCGA-06-6695 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1600 TCGA-12-1602 
       42.05         8.32        14.60        17.72        14.73         6.77 
TCGA-12-3646 TCGA-14-0740 TCGA-14-0783 TCGA-14-1451 TCGA-14-1453 TCGA-14-1794 
       44.02        11.97         6.21        23.11         1.15         0.99 
TCGA-14-3477 TCGA-19-1390 TCGA-19-2623 TCGA-19-2624 TCGA-19-4065 TCGA-19-5960 
        3.78        25.38         7.53         0.16         7.04        14.96 
TCGA-26-1438 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-32-4210 TCGA-32-4211 
       10.03         9.40         8.88        18.97         3.72        12.59 
TCGA-41-2571 TCGA-74-6584 TCGA-76-6193 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5279 
        0.85         7.50         2.70        47.93        50.86        44.52 
TCGA-DB-A4XH TCGA-DH-5142 TCGA-DU-5871 TCGA-DU-6401 TCGA-DU-6542 TCGA-DU-7007 
       31.63        63.88        18.94        87.45         2.40        62.96 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-8167 TCGA-DU-A5TU TCGA-DU-A6S6 TCGA-DU-A76R 
      156.23        14.99        15.48        26.17        95.11        21.30 
TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-A7YH TCGA-E1-A7YK TCGA-E1-A7YS 
       38.89        50.14        41.13        93.21        12.43        15.32 
TCGA-E1-A7YV TCGA-E1-A7Z4 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-A4MX TCGA-FG-A6J3 
       32.45       145.05        14.93        42.54        18.71        22.26 
TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7690 
       40.11         3.75         6.38        42.74        31.69         0.10 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8018 TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8563 
       11.28        31.43        37.87         0.10         2.50        28.27 
TCGA-HT-A5R7 TCGA-HT-A618 TCGA-HT-A61B TCGA-IK-7675 TCGA-P5-A5EW TCGA-P5-A5EZ 
       20.22        16.83        17.52        19.00         6.71         2.30 
TCGA-P5-A5F4 TCGA-P5-A72W TCGA-P5-A72X TCGA-S9-A6TV TCGA-S9-A6U1 TCGA-S9-A6WQ 
        7.59        10.42        13.25        18.77        25.81        14.07 
TCGA-S9-A7QX TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-TM-A84I TCGA-TQ-A7RR 
       18.54        30.05        98.63        18.71        28.08        25.87 
TCGA-VM-A8C8 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85B TCGA-02-0034 TCGA-02-0052 
       45.93        13.32        39.88        45.80        14.14        12.59 
TCGA-02-0055 TCGA-02-0071 TCGA-02-0075 TCGA-02-0084 TCGA-02-0087 TCGA-02-0099 
        2.50         5.49        20.84        12.62        57.76         3.48 
TCGA-02-0102 TCGA-02-0113 TCGA-02-0266 TCGA-02-2466 TCGA-06-0140 TCGA-06-0146 
       27.02        92.65        17.72        16.80         0.20        20.09 
TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 TCGA-06-0162 TCGA-06-0173 
       17.79         8.61        12.33         9.44         3.42         4.47 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 TCGA-06-0190 TCGA-06-0197 TCGA-06-0221 
        3.22         4.18        69.90        10.42         5.56        19.82 
TCGA-06-0237 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 TCGA-06-0875 TCGA-06-0939 
       13.64         4.70        35.11         2.10        43.46        26.76 
TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0349 TCGA-08-0386 TCGA-08-0510 
        7.79         7.36        37.84         9.80        18.02         4.27 
TCGA-08-0514 TCGA-12-0616 TCGA-12-0619 TCGA-12-1088 TCGA-14-0813 TCGA-14-0817 
       11.08        14.73        34.92       127.59         1.35         5.39 
TCGA-14-0867 TCGA-14-0871 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-19-0957 
        2.04        28.93        53.19        26.07        16.37        21.90 
TCGA-19-1388 TCGA-28-5214 TCGA-76-6660 
       12.95        23.44         3.75 

$`DEL PEAK 30(12Q15) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        5.23        12.85         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-12-0615 TCGA-12-1092 
       26.79         1.87         3.12         2.56        15.35        21.73 
TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       15.65        25.68        59.77        26.93        15.22        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       12.69        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
       15.12         0.95        23.05        13.78         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       16.50        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       32.05        58.78         7.10        30.18         0.92        40.96 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
        6.67        12.43         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 
        5.88         7.17        17.49         7.96         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 
       13.97         6.41         8.61        14.27         3.39         3.65 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.17        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        1.08         4.08        24.23         7.00         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 
       14.07        16.80        17.79        28.54        13.87         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.13         9.37        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        16.77        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.78         0.20         2.53         9.21         8.35 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        0.66         6.74         4.77        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.86        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 
        8.84        22.78        25.18        21.14        19.86        10.85 
TCGA-32-5222 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
       19.23        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
       11.84         0.20        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.80         4.54         3.09         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       36.85        16.70         3.29        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 
       49.94        49.12       122.73        81.96        75.25        72.92 
TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       91.13        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O 
       39.78        37.45        33.57        72.95        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       16.18        19.96        46.06        24.59        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        8.45         6.81       182.33        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        1.22         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7011 
       94.52       114.08         7.96        11.47       154.36       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 
       10.36         7.96        94.32        18.94        44.02        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8168 
       14.60        20.68        21.40        19.13        16.96        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY 
       33.27        29.85        31.69        24.43        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       25.55        21.57        20.98        22.29        11.41        26.76 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       44.42         0.56        67.46        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YI 
       78.21        95.57       130.78        14.30        29.13         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YU 
       19.46        16.18        21.30        75.02        51.88         0.76 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z6 TCGA-EZ-7264 
       36.82       146.14        13.08        73.48        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       18.77        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       23.70        14.76        21.53        15.02        16.44        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7475 
        6.67        11.54         0.13         0.03        16.54        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54        24.26        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 
       44.68         6.05         0.10        14.96         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-8010 
        0.13         3.68         5.33        35.47         3.72         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 
       16.24         9.40        63.55         0.10        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        6.25         0.46         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 
       34.19        15.72         0.23        26.04         0.13         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       16.14        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 
        0.10        56.58        45.44        41.49        68.32        69.27 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       12.76        28.87        20.71        14.40        14.40         0.23 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 
        7.99         2.37         9.44         5.88         7.96         1.28 
TCGA-P5-A72U TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
        0.23        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.70        11.08        12.99        88.83        94.03        32.65 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        62.17        87.12        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       36.82        24.39        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       18.64        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY 
       20.02         8.19         2.04        20.68        15.06        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 TCGA-S9-A89Z 
       27.16       169.84        10.39        99.06        31.59        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU 
       36.69        33.73        31.20        30.05        26.14        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       61.41        26.99        31.36        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85C 
       23.21         8.05        51.06        43.96        43.40        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       37.71        20.81         7.63        11.77         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       23.18        10.59        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       87.06        77.65        20.12        53.10        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       12.16        90.58         2.83         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 
       18.31         6.87        14.73         3.22        15.09         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       28.70        25.05        10.19        27.25        89.72        22.72 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       51.32         8.81        16.96        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.27        16.21         3.35 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 
       10.29         2.20        11.74         2.33        10.09        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 
       46.59        13.94        10.45         3.19        10.82        11.80 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.91        10.65         5.85        19.66         3.29        13.12 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
        4.04        91.00        88.14        20.25         3.65        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       27.22        44.58        15.42        38.96         4.67         7.40 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         7.66         8.42         7.40        11.84         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       15.02        24.16         0.72        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.82         9.01         0.26        72.36         9.57         3.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       12.62         5.75         5.75         9.80        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-1084 
       46.19         7.17        40.41        16.57        20.78        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
       31.50         5.39       120.56        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 
        1.74         8.42        25.71        12.16        29.23        65.33 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       22.29         3.39        12.23        14.93        15.35        13.97 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        0.72        12.56        42.15        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       12.99        10.45         7.59        94.78         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        26.66        12.13         3.65        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 
       27.78        38.76         8.94        20.58         5.82         7.59 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       33.21        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-1037 TCGA-14-1043 
        3.98         4.14         2.24        11.24        19.30         0.79 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-19-0955 
       13.78        50.53        19.10        13.28         3.91        11.77 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 
        0.66        10.75         9.07         5.95         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       14.86         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       31.27        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 TCGA-81-5911 
        5.42         7.36        11.38         5.42         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                      156.23                       211.17 
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                       16.37                        15.98 
[1] "0.1 - 156.2 (16.4)" "0.0 - 211.2 (16.0)"
[1] "hr=" "1"  
D60V2, continuous
D60V3, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q15) MUTATED    79  63
  DEL PEAK 30(12Q15) WILD-TYPE 494 449
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q15) MUTATED     79   63
  DEL PEAK 30(12Q15) WILD-TYPE  494  449
                        clus
vv                       DEL PEAK 30(12Q15) MUTATED
  BRAIN                                          79
  CENTRAL NERVOUS SYSTEM                         63
                        clus
vv                       DEL PEAK 30(12Q15) WILD-TYPE
  BRAIN                                           494
  CENTRAL NERVOUS SYSTEM                          449
[1] 2 2
[1] FALSE
D60V4, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q15) MUTATED    60  82
  DEL PEAK 30(12Q15) WILD-TYPE 393 550
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q15) MUTATED     60   82
  DEL PEAK 30(12Q15) WILD-TYPE  393  550
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  FEMALE                         60                          393
  MALE                           82                          550
[1] 2 2
[1] FALSE
D60V5, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q15) MUTATED    29 104
  DEL PEAK 30(12Q15) WILD-TYPE 229 666
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q15) MUTATED     29  104
  DEL PEAK 30(12Q15) WILD-TYPE  229  666
     clus
vv    DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  NO                          29                          229
  YES                        104                          666
[1] 2 2
[1] FALSE
D60V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 30(12Q15) MUTATED            37                             5
  DEL PEAK 30(12Q15) WILD-TYPE         157                            25
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 30(12Q15) MUTATED                 14                12
  DEL PEAK 30(12Q15) WILD-TYPE              115               177
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 30(12Q15) MUTATED                     3
  DEL PEAK 30(12Q15) WILD-TYPE                  15
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 30(12Q15) MUTATED                                71
  DEL PEAK 30(12Q15) WILD-TYPE                             454
D60V7, multiclass
                                 clus
vv                                DEL PEAK 30(12Q15) MUTATED
  ASTROCYTOMA                                             37
  GLIOBLASTOMA MULTIFORME (GBM)                            5
  OLIGOASTROCYTOMA                                        14
  OLIGODENDROGLIOMA                                       12
  TREATED PRIMARY GBM                                      3
  UNTREATED PRIMARY (DE NOVO) GBM                         71
                                 clus
vv                                DEL PEAK 30(12Q15) WILD-TYPE
  ASTROCYTOMA                                              157
  GLIOBLASTOMA MULTIFORME (GBM)                             25
  OLIGOASTROCYTOMA                                         115
  OLIGODENDROGLIOMA                                        177
  TREATED PRIMARY GBM                                       15
  UNTREATED PRIMARY (DE NOVO) GBM                          454
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 30(12Q15) MUTATED                                  0     0
  DEL PEAK 30(12Q15) WILD-TYPE                                1    21
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 30(12Q15) MUTATED                           6   130
  DEL PEAK 30(12Q15) WILD-TYPE                        65   829
D60V8, multiclass
                                  clus
vv                                 DEL PEAK 30(12Q15) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     0
  BLACK OR AFRICAN AMERICAN                                 6
  WHITE                                                   130
                                  clus
vv                                 DEL PEAK 30(12Q15) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      21
  BLACK OR AFRICAN AMERICAN                                  65
  WHITE                                                     829
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V9, binary
                              cls
clus                             0   1
  DEL PEAK 30(12Q15) MUTATED     5 120
  DEL PEAK 30(12Q15) WILD-TYPE  39 801
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(12Q15) MUTATED      5  120
  DEL PEAK 30(12Q15) WILD-TYPE   39  801
                        clus
vv                       DEL PEAK 30(12Q15) MUTATED
  HISPANIC OR LATINO                              5
  NOT HISPANIC OR LATINO                        120
                        clus
vv                       DEL PEAK 30(12Q15) WILD-TYPE
  HISPANIC OR LATINO                               39
  NOT HISPANIC OR LATINO                          801
[1] 2 2
[1] FALSE

Clustering(61) Variable = DEL PEAK 31(13Q14.2) MUTATION ANALYSIS
D61V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 31(13Q14.2) MUTATED   130 251
  DEL PEAK 31(13Q14.2) WILD-TYPE 350 347
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           381                            697 
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           251                            347 
$`DEL PEAK 31(13Q14.2) MUTATED`
TCGA-CS-6670 TCGA-06-1806 TCGA-06-5408 TCGA-06-5412 TCGA-06-5414 TCGA-06-5416 
       46.88        15.32        11.74         4.54         8.98         6.71 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6701 TCGA-06-A7TK TCGA-12-0615 TCGA-12-1092 
        3.75         4.57         4.96        14.60        15.35        21.73 
TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3652 TCGA-12-3653 
       15.65         6.77        59.77        44.02        34.92        14.53 
TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 TCGA-14-0812 TCGA-14-0862 
       14.93        15.12        11.97         6.21         3.25         2.89 
TCGA-14-0865 TCGA-14-1034 TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 
       16.50        15.95         1.12        23.11         1.15        30.18 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1823 TCGA-14-1825 TCGA-14-3477 TCGA-16-1045 
       40.96         6.67        17.85         7.63         3.78        29.03 
TCGA-16-1055 TCGA-16-1060 TCGA-19-1392 TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 
       10.29         9.14         3.65         1.08         7.53         4.08 
TCGA-19-2629 TCGA-19-4065 TCGA-19-5947 TCGA-19-5955 TCGA-19-A60I TCGA-26-1438 
       24.23         7.04         6.64         1.78        17.79        10.03 
TCGA-26-1439 TCGA-26-5132 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1832 
       13.87         9.40        18.97        19.33         5.06         9.86 
TCGA-27-1834 TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1752 
       40.54        18.08        16.77         7.59         8.35         8.48 
TCGA-28-2502 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
        0.66         4.77        15.39        21.07         0.49         0.10 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2632 TCGA-32-2634 TCGA-32-4210 TCGA-32-4213 
       14.86        12.23         8.84        22.78         3.72        19.86 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 
       10.85         0.85         8.94         0.99        11.84         0.20 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-74-6573 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 
        4.08         1.45         3.45         3.65         2.53        36.85 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 TCGA-76-6661 TCGA-76-6662 
        3.29         2.70         8.35        20.98        23.90        34.45 
TCGA-CS-4943 TCGA-CS-6290 TCGA-CS-6666 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-A4XA 
       36.36        37.38        46.95        47.93        50.86        18.84 
TCGA-DB-A4XE TCGA-DB-A64X TCGA-DB-A75O TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 
       37.45        18.51        30.74        19.96        63.88        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 
       27.81        17.19        13.71        18.02         6.74        13.38 
TCGA-DU-6392 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7006 
      211.17        65.75         1.22        94.52       114.08        11.47 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 
      156.23        14.99        10.36         7.96        18.94        44.02 
TCGA-DU-7301 TCGA-DU-8158 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       25.91         5.10        19.13        15.48        14.17        33.27 
TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A6S3 TCGA-DU-A6S7 TCGA-DU-A76R TCGA-DU-A7T8 
       31.69        26.17        21.57        20.98        21.30       139.04 
TCGA-DU-A7TA TCGA-DU-A7TI TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5307 
       84.33        38.89        50.14        67.46        41.13        57.93 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YL TCGA-E1-A7YQ 
      130.78        14.30        29.13        93.21        16.18        51.88 
TCGA-E1-A7YS TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-FG-5962 TCGA-FG-5963 
       15.32        36.82       146.14        73.48        47.77        25.48 
TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6692 TCGA-FG-7641 TCGA-FG-8188 
       52.21        18.77        14.93        18.44        20.61        14.96 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J3 TCGA-FG-A70Y 
       23.70        14.76        21.53        15.02        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7475 
       10.78         5.72        11.54        40.11         0.13        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7604 TCGA-HT-7605 
        6.54        24.26       106.95       172.77       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7692 
       17.29         0.23        31.69        14.96         0.10         2.96 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7873 TCGA-HT-7902 TCGA-HT-8106 TCGA-HT-8563 
       39.09         0.23        23.61        31.43         0.10        28.27 
TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A617 TCGA-HT-A61B TCGA-HT-A74O 
       15.72        20.22         2.70        16.14        17.52         0.10 
TCGA-HW-7489 TCGA-HW-7491 TCGA-KT-A74X TCGA-P5-A5EZ TCGA-P5-A5F4 TCGA-P5-A72W 
       41.49        68.32        14.40         2.30         7.59        10.42 
TCGA-P5-A737 TCGA-QH-A65S TCGA-QH-A65Z TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY 
       12.23         2.53        14.04        14.53        13.61        13.41 
TCGA-QH-A6X8 TCGA-RY-A83Z TCGA-RY-A847 TCGA-S9-A6TV TCGA-S9-A6UA TCGA-S9-A7IS 
       16.73         9.90        30.67        18.77         5.85         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J3 TCGA-S9-A89V 
       26.93        23.51        19.99        20.02        20.68        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84F TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84R 
       20.48        54.77        59.05        28.08        40.83        18.61 
TCGA-TM-A84S TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RM TCGA-TQ-A7RW TCGA-VM-A8CD 
       14.93        15.98        40.41        36.69        26.99         7.89 
TCGA-VM-A8CF TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 
       20.02        20.81         7.63        11.77        18.35        23.18 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0033 
       35.41        20.71        20.12        53.10        24.59         2.83 
TCGA-02-0034 TCGA-02-0039 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.14        10.52        15.09        12.59         6.54         2.50 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 
        9.57        19.73        26.43        28.70        20.84        27.25 
TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
        3.48        65.00        11.67        92.65        99.98        15.65 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0330 TCGA-02-0339 TCGA-02-0430 TCGA-02-0440 
        9.90        10.62        15.91        12.39        10.55        11.34 
TCGA-02-0446 TCGA-02-0456 TCGA-02-2483 TCGA-06-0122 TCGA-06-0128 TCGA-06-0130 
        9.27         3.35        15.32         6.15        22.72        12.95 
TCGA-06-0138 TCGA-06-0140 TCGA-06-0143 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 
       24.23         0.20        11.74        17.79         8.61        12.33 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0177 
       10.82         9.44         3.42        56.91         5.85         4.18 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 
        3.65        69.90        44.58        10.42        38.96         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        5.56         0.39         7.66         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0402 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 
        0.72        19.82         0.26         4.70         3.16        35.11 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0745 TCGA-06-0875 TCGA-06-0881 TCGA-06-0939 
        9.80         2.10         7.86        43.46        16.57        26.76 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2566 TCGA-06-2567 
       33.90         1.08        12.49         4.93         5.98         4.37 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 TCGA-08-0347 
       31.50         7.79         7.36        37.84         4.18        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0354 TCGA-08-0357 TCGA-08-0359 
       12.16         9.80        29.23        17.95        37.58         3.39 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       18.02        15.35         0.72        12.56         4.27        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0620 TCGA-12-0662 
       11.08        19.59        58.68        10.75        10.45        38.17 
TCGA-12-0670 TCGA-12-0691 TCGA-12-0769 TCGA-12-0772 TCGA-12-0776 TCGA-12-0819 
       25.97        12.13        15.06        53.85         9.73        24.79 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1091 
       27.78        38.76         8.94        20.58       127.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 
       15.98        12.23         9.11        14.53         4.14         2.24 
TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 
        5.39         2.04        19.30        13.78        50.53        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-1385 TCGA-19-1387 
       13.28         3.91        26.07        16.37        10.75         5.95 
TCGA-19-1389 TCGA-26-5133 TCGA-26-6173 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
        4.64        14.86         7.92        11.01        13.64        22.68 
TCGA-32-2616 TCGA-76-6283 TCGA-81-5911 
        7.36         5.42        17.72 

$`DEL PEAK 31(13Q14.2) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        51.55        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5410 
       18.64        21.40        45.60        42.77        59.38         3.55 
TCGA-06-5411 TCGA-06-5413 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 
        8.35         8.81         8.55         2.73         6.15         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 
        8.32        12.85         4.77         1.55         4.77        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TL TCGA-12-1599 TCGA-12-1600 
        1.87         3.12         2.56        17.72        25.68        14.73 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-5299 TCGA-12-5301 
       26.93        15.22        10.95        12.69         3.22         2.04 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0866 TCGA-14-1395 TCGA-14-1401 
        0.95        23.05        13.78        26.33         1.38         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 
       32.05        58.78         7.10         0.92        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
        1.97        17.79         5.88         7.17        17.49         7.96 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 
        3.42        17.59         4.57        14.01        21.24        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1786 
        6.41         8.61        14.27         3.39        25.38         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 
       12.66         3.25         0.13         9.67         4.87         0.16 
TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        7.00        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J5 TCGA-26-1440 
       22.49        14.07        16.80        14.96        28.54         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5135 TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 
        7.13         9.37         8.88        16.60        24.23        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 TCGA-27-2526 
       30.05        14.04        11.51        24.76        16.08         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 
       14.40        15.78         0.20         2.53         9.21         7.63 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-32-1978 
        1.22         1.55         2.83         0.13         6.74        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 
       15.02        15.95        25.18        21.14        12.59        19.23 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9T 
       13.35         9.53         4.44        15.12        12.46        25.58 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.91         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-6191 TCGA-76-6282 TCGA-76-6656 
        4.54         3.09         9.17        16.70        17.06         4.83 
TCGA-76-6657 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        5.03        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
      117.50         7.69        43.89        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6667 
       21.01        53.62         6.38        17.69        26.76        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 
       49.94        49.12       122.73        81.96        75.25        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB 
       91.13        44.52        36.56        78.28        46.42        30.21 
TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       39.78        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5143 
       14.40        12.10        11.24        17.88        16.18        46.06 
TCGA-DH-5144 TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UV 
       24.59        17.19        54.25        23.21        17.46        18.61 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       14.56        17.46         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       46.06        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 TCGA-DU-7011 
       16.83         7.96         2.40        62.96       154.36       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
        6.54         8.84       117.40        90.77        30.67        26.30 
TCGA-DU-7294 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 
       94.32        60.30        23.31        41.98         2.76        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-A5TR TCGA-DU-A5TT 
       14.60        20.68        21.40        16.96        29.85        24.43 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K 
       24.99        33.96        25.55        95.11        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
       26.76        17.98        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YI 
        0.56        79.99       134.27        78.21        95.57         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YU TCGA-E1-A7YV 
       19.46        12.43        21.30        75.02         0.76        32.45 
TCGA-E1-A7Z2 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       13.08       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       36.82        42.54        41.33        15.35        17.88        22.55 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8189 
       20.09        28.34        13.68        14.24        16.01        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A6J1 
       32.61        38.27        10.72        18.38        18.71        16.44 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7472 
       36.66        48.69        27.52         0.10         6.67         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
       16.54         3.75         6.38        40.34        75.19        95.93 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7607 TCGA-HT-7608 
        4.01         5.03        29.85        23.18         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       45.99        56.09        57.60        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7691 
        0.76        44.68         6.05        42.74         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 
       17.52         6.90        14.53        39.48        19.23        50.63 
TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
        0.49        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
       35.47         3.72        11.28         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA 
       34.19         0.23        26.04         0.13         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61C 
        0.10         5.33        16.93         1.81        16.83        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 
        2.43        10.52        15.35        11.05        56.58        45.44 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 
       31.63        12.76        28.87        20.71        19.00        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         7.99         2.37         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        7.96         1.28         0.23        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A77W TCGA-P5-A77X 
        9.01        13.61         9.60         7.56        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A6CS 
        2.37         4.41        15.16        12.62        15.85        19.33 
TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       14.83        12.23         9.17        10.29        14.53        16.34 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 
       94.03        32.65        30.87         5.46        28.08         2.07 
TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       19.59        62.17        87.12        41.10        40.93        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QW 
       18.64        14.07        36.13         8.19         2.04        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       30.05        98.63        31.59        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J 
       65.39        24.92        16.18        40.64        30.44        24.16 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       24.79        33.24        25.38        23.80        21.37        19.69 
TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
        2.04        44.09        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       25.87        33.93        61.41        31.36        45.93        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
       13.51         0.10        39.16        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-02-0003 TCGA-02-0009 
       43.40        45.80        46.88        37.71         4.73        10.59 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0025 TCGA-02-0027 
       82.59        20.61        87.06        77.65        42.74        12.16 
TCGA-02-0028 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
       90.58         3.62        10.72        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0070 TCGA-02-0071 
        3.22        19.86         8.35         6.02        25.05         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       10.19        89.72        22.72        12.62        51.32         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0116 
       57.76        16.96        27.02        17.65        23.18        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 TCGA-02-0326 
       13.87        14.20        15.95        12.23         7.73         7.33 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0432 
       25.71         4.37        25.12        10.59        14.50        47.11 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.21        16.80        12.92        15.45        20.32         2.70 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0132 
       20.38        47.61         6.94         3.98        33.67        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 
       14.30        26.70        11.90        10.29         2.20         2.33 
TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       20.09        10.09        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0160 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        3.19        11.80        10.65        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
        4.47         3.22         4.04        91.00        88.14        20.25 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0194 TCGA-06-0208 TCGA-06-0210 
       73.84        27.22        15.42         4.67         8.42         7.40 
TCGA-06-0211 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       11.84        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        9.01        72.36         9.57        12.62         5.75         5.75 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 
       23.57        14.20        26.40        46.88         2.70         2.70 
TCGA-06-0750 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 TCGA-06-1086 
        0.92        46.19         7.17        40.41        20.78         6.84 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2569 
       17.65        12.56        30.64         5.95        16.64         0.43 
TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        5.39       120.56        22.68       115.86         1.74         8.42 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0358 
       65.33         1.28         8.42        24.56        31.10        22.29 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0390 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 
       12.23        14.93        13.97        19.33         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        18.41         7.56        14.73        12.99        34.92 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        7.59        94.78         0.10        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       28.41        43.23         7.63        14.93        14.86        91.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-1089 TCGA-12-1090 TCGA-12-1095 
       18.48        10.62        23.51         5.82         7.59        15.85 
TCGA-12-1098 TCGA-14-0789 TCGA-14-0813 TCGA-14-0871 TCGA-14-1043 TCGA-15-1446 
        3.98        11.24         1.35        28.93         0.79        19.10 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1386 TCGA-19-1388 TCGA-26-1442 
       11.77        21.90         0.66         9.07        12.95        31.33 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        5.49         1.58         2.33         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-76-6280 TCGA-76-6660 TCGA-81-5910 
        5.16        12.76         5.42        11.38         3.75         1.61 
TCGA-87-5896 
       26.30 

  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                        211.17                         182.33 
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                         15.09                          16.70 
[1] "0.1 - 211.2 (15.1)" "0.0 - 182.3 (16.7)"
[1] "hr=" "1.4"
D61V2, continuous
D61V3, binary
                                cls
clus                               0   1
  DEL PEAK 31(13Q14.2) MUTATED   240 142
  DEL PEAK 31(13Q14.2) WILD-TYPE 333 370
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(13Q14.2) MUTATED    240  142
  DEL PEAK 31(13Q14.2) WILD-TYPE  333  370
                        clus
vv                       DEL PEAK 31(13Q14.2) MUTATED
  BRAIN                                           240
  CENTRAL NERVOUS SYSTEM                          142
                        clus
vv                       DEL PEAK 31(13Q14.2) WILD-TYPE
  BRAIN                                             333
  CENTRAL NERVOUS SYSTEM                            370
[1] 2 2
[1] FALSE
D61V4, binary
                                cls
clus                               0   1
  DEL PEAK 31(13Q14.2) MUTATED   148 234
  DEL PEAK 31(13Q14.2) WILD-TYPE 305 398
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(13Q14.2) MUTATED    148  234
  DEL PEAK 31(13Q14.2) WILD-TYPE  305  398
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  FEMALE                          148                            305
  MALE                            234                            398
[1] 2 2
[1] FALSE
D61V5, binary
                                cls
clus                               0   1
  DEL PEAK 31(13Q14.2) MUTATED    71 293
  DEL PEAK 31(13Q14.2) WILD-TYPE 187 477
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(13Q14.2) MUTATED     71  293
  DEL PEAK 31(13Q14.2) WILD-TYPE  187  477
     clus
vv    DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  NO                            71                            187
  YES                          293                            477
[1] 2 2
[1] FALSE
D61V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 31(13Q14.2) MUTATED            63                            10
  DEL PEAK 31(13Q14.2) WILD-TYPE         131                            20
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 31(13Q14.2) MUTATED                 36                43
  DEL PEAK 31(13Q14.2) WILD-TYPE               93               146
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 31(13Q14.2) MUTATED                     6
  DEL PEAK 31(13Q14.2) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 31(13Q14.2) MUTATED                               224
  DEL PEAK 31(13Q14.2) WILD-TYPE                             301
D61V7, multiclass
                                 clus
vv                                DEL PEAK 31(13Q14.2) MUTATED
  ASTROCYTOMA                                               63
  GLIOBLASTOMA MULTIFORME (GBM)                             10
  OLIGOASTROCYTOMA                                          36
  OLIGODENDROGLIOMA                                         43
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          224
                                 clus
vv                                DEL PEAK 31(13Q14.2) WILD-TYPE
  ASTROCYTOMA                                                131
  GLIOBLASTOMA MULTIFORME (GBM)                               20
  OLIGOASTROCYTOMA                                            93
  OLIGODENDROGLIOMA                                          146
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            301
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 31(13Q14.2) MUTATED                                  1     6
  DEL PEAK 31(13Q14.2) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 31(13Q14.2) MUTATED                          26   342
  DEL PEAK 31(13Q14.2) WILD-TYPE                        45   617
D61V8, multiclass
                                  clus
vv                                 DEL PEAK 31(13Q14.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  26
  WHITE                                                     342
                                  clus
vv                                 DEL PEAK 31(13Q14.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    45
  WHITE                                                       617
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V9, binary
                                cls
clus                               0   1
  DEL PEAK 31(13Q14.2) MUTATED    12 331
  DEL PEAK 31(13Q14.2) WILD-TYPE  32 590
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(13Q14.2) MUTATED     12  331
  DEL PEAK 31(13Q14.2) WILD-TYPE   32  590
                        clus
vv                       DEL PEAK 31(13Q14.2) MUTATED
  HISPANIC OR LATINO                               12
  NOT HISPANIC OR LATINO                          331
                        clus
vv                       DEL PEAK 31(13Q14.2) WILD-TYPE
  HISPANIC OR LATINO                                 32
  NOT HISPANIC OR LATINO                            590
[1] 2 2
[1] FALSE

Clustering(62) Variable = DEL PEAK 32(13Q22.1) MUTATION ANALYSIS
D62V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 32(13Q22.1) MUTATED   124 240
  DEL PEAK 32(13Q22.1) WILD-TYPE 356 358
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                           364                            714 
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                           240                            358 
$`DEL PEAK 32(13Q22.1) MUTATED`
TCGA-CS-6670 TCGA-06-1806 TCGA-06-5408 TCGA-06-5412 TCGA-06-5414 TCGA-06-5416 
       46.88        15.32        11.74         4.54         8.98         6.71 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6701 TCGA-06-A6S1 TCGA-06-A7TK TCGA-12-0615 
        3.75         4.57         4.96         2.56        14.60        15.35 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-5295 
       21.73        15.65         6.77        59.77        44.02        14.93 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
       15.12        11.97         6.21        13.78         3.25         2.89 
TCGA-14-0865 TCGA-14-1034 TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 
       16.50        15.95         1.12        23.11         1.15        30.18 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1823 TCGA-14-1825 TCGA-14-3477 TCGA-16-1045 
       40.96         6.67        17.85         7.63         3.78        29.03 
TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 TCGA-19-1392 TCGA-19-2621 TCGA-19-2623 
       10.29         9.14        21.24         3.65         1.08         7.53 
TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 TCGA-19-5947 TCGA-19-5955 TCGA-19-A60I 
        4.08        24.23         7.04         6.64         1.78        17.79 
TCGA-26-1439 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1832 TCGA-27-1834 
       13.87        18.97        19.33         5.06         9.86        40.54 
TCGA-27-2519 TCGA-27-2521 TCGA-28-1746 TCGA-28-1750 TCGA-28-1752 TCGA-28-2502 
       18.08        16.77         0.20         8.35         8.48         0.66 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1987 TCGA-32-2491 TCGA-32-2634 
        4.77        15.39         0.49        14.86        12.23        22.78 
TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 
        3.72        19.86        10.85         8.94         0.99        11.84 
TCGA-41-4097 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 
        0.20         4.08         1.45         3.65         2.53        36.85 
TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 TCGA-76-6661 TCGA-CS-4943 TCGA-CS-6290 
        2.70         8.35        20.98        23.90        36.36        37.38 
TCGA-CS-6666 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-A4XA TCGA-DB-A4XE TCGA-DB-A64X 
       46.95        47.93        50.86        18.84        37.45        18.51 
TCGA-DB-A75O TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F 
       30.74        19.96        63.88        30.21        27.81        17.19 
TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5853 TCGA-DU-6392 TCGA-DU-6399 TCGA-DU-6400 
       13.71        18.02        13.38       211.17        65.75         1.22 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7290 
       94.52       114.08        11.47       156.23        14.99        10.36 
TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-8158 TCGA-DU-8165 
        7.96        18.94        44.02        25.91         5.10        19.13 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S3 
       15.48        14.17        31.69        26.17        33.96        21.57 
TCGA-DU-A6S7 TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-E1-5303 TCGA-E1-5304 
       20.98        21.30       139.04        84.33        67.46        41.13 
TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       57.93       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YL TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YW TCGA-E1-A7YY TCGA-FG-5962 
       16.18        51.88        15.32        36.82       146.14        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6692 TCGA-FG-7641 
       25.48        52.21        18.77        14.93        18.44        20.61 
TCGA-FG-8188 TCGA-FG-A4MT TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       14.96        38.27        23.70        14.76        21.53        15.02 
TCGA-FG-A6J3 TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       22.26        10.78         5.72        11.54        40.11         0.13 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7482 TCGA-HT-7604 TCGA-HT-7605 
       17.42         6.54        24.26       106.95       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
       17.29        57.60         0.23        31.69        14.96         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7873 TCGA-HT-7882 
        2.96         6.90        39.09         0.23        23.61         3.72 
TCGA-HT-7902 TCGA-HT-8106 TCGA-HT-8564 TCGA-HT-A5R7 TCGA-HT-A614 TCGA-HT-A617 
       31.43         0.10        15.72        20.22         2.70        16.14 
TCGA-HT-A61B TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7491 TCGA-KT-A74X TCGA-P5-A5EZ 
       17.52         0.10        41.49        68.32        14.40         2.30 
TCGA-P5-A5F4 TCGA-P5-A72W TCGA-P5-A737 TCGA-QH-A65S TCGA-QH-A65Z TCGA-QH-A6CV 
        7.59        10.42        12.23         2.53        14.04        14.53 
TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6X8 TCGA-RY-A83Z TCGA-RY-A847 TCGA-S9-A6UA 
       13.61        13.41        16.73         9.90        30.67         5.85 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J3 TCGA-S9-A89V 
        7.92        26.93        23.51        20.02        20.68        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A84F TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84R 
       20.48        54.77        59.05        28.08        40.83        18.61 
TCGA-TM-A84S TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RM TCGA-VM-A8CD TCGA-VM-A8CF 
       14.93        15.98        40.41        36.69         7.89        20.02 
TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 
       20.81         7.63        11.77        18.35        23.18        35.41 
TCGA-02-0011 TCGA-02-0023 TCGA-02-0026 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       20.71        20.12        24.59        90.58         2.83        14.14 
TCGA-02-0039 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0059 
       10.52        15.09        12.59         6.54         2.50         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0099 
       19.73        26.43        28.70        20.84        27.25         3.48 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 TCGA-02-0258 TCGA-02-0321 
       65.00        11.67        92.65        15.65        16.54         9.90 
TCGA-02-0325 TCGA-02-0330 TCGA-02-0339 TCGA-02-0440 TCGA-02-0446 TCGA-02-0456 
       10.62        15.91        12.39        11.34         9.27         3.35 
TCGA-02-2483 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0128 TCGA-06-0130 
       15.32         6.15        20.38        47.61        22.72        12.95 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 
       24.23        11.90         0.20        11.74        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0152 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 
       10.09         8.61        12.33        10.82         9.44         3.42 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0177 TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 
       56.91         5.85         4.18         3.65        69.90        44.58 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0213 
       38.96         7.40         5.56         0.39         7.66         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0402 TCGA-06-0410 TCGA-06-0414 TCGA-06-0648 
       15.02         0.72         0.26         4.70        35.11         9.80 
TCGA-06-0649 TCGA-06-0745 TCGA-06-0875 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 
        2.10         7.86        43.46        16.57        26.76        23.93 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        4.04        26.79        11.84        15.32        13.61        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2567 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 
        1.08        12.49         4.37         7.79         7.36        37.84 
TCGA-08-0246 TCGA-08-0347 TCGA-08-0349 TCGA-08-0354 TCGA-08-0357 TCGA-08-0359 
        4.18        25.71         9.80        17.95        37.58         3.39 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       18.02        15.35         0.72        12.56         4.27        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0619 TCGA-12-0620 TCGA-12-0662 
       19.59        58.68        10.75        34.92        10.45        38.17 
TCGA-12-0670 TCGA-12-0691 TCGA-12-0769 TCGA-12-0772 TCGA-12-0776 TCGA-12-0819 
       25.97        12.13        15.06        53.85         9.73        24.79 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1091 
       27.78        38.76         8.94        20.58       127.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 
       15.98        12.23         9.11        14.53         4.14         2.24 
TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 
        5.39         2.04        19.30        13.78        53.19        13.28 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 
        3.91        26.07        16.37        10.75         5.95         4.64 
TCGA-26-5133 TCGA-26-6173 TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       14.86         7.92        11.28        11.01        13.64        22.68 
TCGA-28-5220 TCGA-32-2616 TCGA-76-6283 TCGA-81-5911 
       12.76         7.36         5.42        17.72 

$`DEL PEAK 32(13Q22.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        51.55        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5410 
       18.64        21.40        45.60        42.77        59.38         3.55 
TCGA-06-5411 TCGA-06-5413 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 
        8.35         8.81         8.55         2.73         6.15         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-A5U0 
        8.32        12.85         4.77         1.55         4.77        26.79 
TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A7TL TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 
        1.87         3.12        17.72        25.68        14.73        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 
       15.22        10.95        12.69        34.92        14.53         3.22 
TCGA-12-5301 TCGA-14-0781 TCGA-14-0786 TCGA-14-0866 TCGA-14-1395 TCGA-14-1401 
        2.04         0.95        23.05        26.33         1.38         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 
       32.05        58.78         7.10         0.92        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
        1.97        17.79         5.88         7.17        17.49         7.96 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1047 TCGA-16-1056 TCGA-16-1063 TCGA-16-1460 
        3.42        17.59         4.57        14.01        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        8.61        14.27         3.39        25.38         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 TCGA-19-2631 
        3.25         0.13         9.67         4.87         0.16         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5956 
       17.19         8.02        18.90         4.73        12.10        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 
       14.07        16.80        14.96        28.54        10.03         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-27-1831 TCGA-27-1833 
        7.13         9.37         9.40         8.88        16.60        24.23 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 
       21.30        30.05        14.04        11.51        24.76        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.78         2.53         9.21 
TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 
        7.63         1.22         1.55         2.83         0.13         6.74 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       21.07         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       12.69        16.93        20.78        15.02        15.95         8.84 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       25.18        21.14        12.59        19.23         0.85        13.35 
TCGA-41-2575 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9T TCGA-74-6573 
        9.53         4.44        15.12        12.46        25.58         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.91         4.34        14.33         8.22         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 
        4.54         3.09         9.17        16.70         3.29        17.06 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R 
        4.83         5.03        34.45        18.64        36.20         5.92 
TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 
        6.28        20.55       117.50         7.69        43.89        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.26        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       26.76        48.30        49.94        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       75.25        72.92        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.42        30.21        39.78        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       27.81        29.23        14.40        12.10        11.24        17.88 
TCGA-DB-A75P TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       16.18        46.06        24.59        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 
       17.46        18.61        14.56        17.46         6.74         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6402 
       22.42        49.02        75.16        46.06        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-6542 
       11.64       133.74        19.89        16.83         7.96         2.40 
TCGA-DU-7007 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
       62.96       154.36       105.21         6.54         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7302 TCGA-DU-7304 
       90.77        30.67        26.30        94.32        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76        23.74        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A6S2 
       16.96        33.27        29.85        24.43        24.99        25.55 
TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T6 TCGA-DU-A7TB 
       95.11        22.29        11.41        26.76        17.98        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 
       37.38         7.50        44.42        38.89         0.56        50.14 
TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YJ TCGA-E1-A7YK 
       79.99       134.27        78.21        95.57        19.46        12.43 
TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7Z2 TCGA-E1-A7Z3 
       21.30        75.02         0.76        32.45        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5965 
      145.05        32.35        39.48         0.23         0.20        36.82 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7643 
       42.54        41.33        15.35        17.88        22.55        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-8191 
       28.34        13.68        14.24        16.01        22.52        32.61 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A710 
       10.72        18.38        18.71        16.44        28.54        36.66 
TCGA-FG-A711 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7472 TCGA-HT-7473 
       48.69        27.52         0.10         6.67         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 
        3.75         6.38        40.34        75.19        95.93       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7607 TCGA-HT-7608 
        4.01         5.03        29.85        23.18         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       45.99        56.09        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7691 TCGA-HT-7693 
       44.68         6.05        42.74         0.10         0.10        17.52 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 
       14.53        39.48        19.23        50.63         0.49        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 
        0.33         0.13         3.68         5.33        35.47        11.28 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS 
       13.78         0.23        29.59        34.19        28.27         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13         0.07        27.35         0.10         5.33 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.93         1.81        16.83        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7493 TCGA-HW-7495 
       15.35        11.05        56.58        45.44        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       28.87        20.71        19.00        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 
        7.99         2.37         9.44         5.88         7.96         1.28 
TCGA-P5-A72U TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
        0.23        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        9.60         7.56        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CX 
       15.16        12.62        15.85        19.33        14.83        12.23 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA 
        9.17        10.29        14.53        16.34         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.70        11.08        12.99        88.83        94.03        32.65 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS 
       30.87         5.46        28.08         2.07        19.59        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
       95.93       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QW 
       14.07        36.13        19.99         8.19         2.04        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       30.05        98.63        31.59        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J 
       65.39        24.92        16.18        40.64        30.44        24.16 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       24.79        33.24        25.38        23.80        21.37        19.69 
TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
        2.04        44.09        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        45.93 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       43.20        13.51         0.10        39.16        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-02-0003 
       39.88        43.40        45.80        46.88        37.71         4.73 
TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 
       10.59        82.59        20.61        87.06        77.65        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
       42.74        12.16         3.62        10.72        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0070 
       14.73         3.22        19.86         8.35         6.02        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        10.19        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 
        8.81        57.76        16.96        27.02        17.65        23.18 
TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       99.98        48.95        16.93        17.72        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 
        3.98        13.87        14.20        15.95        12.23         7.73 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 
        7.33        25.71         4.37        25.12        10.59        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
       10.55        47.11        16.21        16.80        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0132 
       20.32         2.70         6.94         3.98        33.67        25.35 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0150 
       14.30        26.70        10.29         2.20         2.33        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 TCGA-06-0165 
       46.59        13.94        10.45         3.19        11.80        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.66         3.29        13.12         4.47         3.22         4.04 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       91.00        88.14        20.25        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0216 
       10.42         4.67         8.42         7.40        11.84        24.16 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       19.82        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
        9.01        72.36         9.57         3.16        12.62         5.75 
TCGA-06-0646 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
        5.75        23.57        14.20        26.40        46.88         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 
        2.70         0.92        46.19         7.17        40.41        20.78 
TCGA-06-1086 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        6.84         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-6390 TCGA-06-6693 
       16.64         5.98         0.43        31.50         5.39       120.56 
TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0350 
       22.68       115.86         1.74         8.42        12.16        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0358 
       65.33         1.28         8.42        24.56        31.10        22.29 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0390 TCGA-08-0514 TCGA-08-0518 TCGA-08-0521 
       12.23        14.93        13.97        11.08        19.33         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        7.27        15.98        18.41         7.56        14.73        12.99 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        7.59        94.78         0.10        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       28.41        43.23         7.63        14.93        14.86        91.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-1089 TCGA-12-1090 TCGA-12-1095 
       18.48        10.62        23.51         5.82         7.59        15.85 
TCGA-12-1098 TCGA-14-0789 TCGA-14-0813 TCGA-14-0871 TCGA-14-1043 TCGA-15-1444 
        3.98        11.24         1.35        28.93         0.79        50.53 
TCGA-15-1446 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1386 TCGA-19-1388 
       19.10        11.77        21.90         0.66         9.07        12.95 
TCGA-26-1442 TCGA-26-5134 TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 
       31.33         5.49         1.58         2.33         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       14.93        17.88        14.53        11.77        31.27        23.44 
TCGA-28-5218 TCGA-28-6450 TCGA-76-6280 TCGA-76-6660 TCGA-81-5910 TCGA-87-5896 
        5.16         5.42        11.38         3.75         1.61        26.30 

  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                        211.17                         182.33 
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                         15.04                          16.80 
[1] "0.1 - 211.2 (15.0)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.5"
D62V2, continuous
D62V3, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q22.1) MUTATED   228 137
  DEL PEAK 32(13Q22.1) WILD-TYPE 345 375
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q22.1) MUTATED    228  137
  DEL PEAK 32(13Q22.1) WILD-TYPE  345  375
                        clus
vv                       DEL PEAK 32(13Q22.1) MUTATED
  BRAIN                                           228
  CENTRAL NERVOUS SYSTEM                          137
                        clus
vv                       DEL PEAK 32(13Q22.1) WILD-TYPE
  BRAIN                                             345
  CENTRAL NERVOUS SYSTEM                            375
[1] 2 2
[1] FALSE
D62V4, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q22.1) MUTATED   144 221
  DEL PEAK 32(13Q22.1) WILD-TYPE 309 411
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q22.1) MUTATED    144  221
  DEL PEAK 32(13Q22.1) WILD-TYPE  309  411
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  FEMALE                          144                            309
  MALE                            221                            411
[1] 2 2
[1] FALSE
D62V5, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q22.1) MUTATED    71 278
  DEL PEAK 32(13Q22.1) WILD-TYPE 187 492
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q22.1) MUTATED     71  278
  DEL PEAK 32(13Q22.1) WILD-TYPE  187  492
     clus
vv    DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  NO                            71                            187
  YES                          278                            492
[1] 2 2
[1] FALSE
D62V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 32(13Q22.1) MUTATED            59                            10
  DEL PEAK 32(13Q22.1) WILD-TYPE         135                            20
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 32(13Q22.1) MUTATED                 34                44
  DEL PEAK 32(13Q22.1) WILD-TYPE               95               145
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 32(13Q22.1) MUTATED                     5
  DEL PEAK 32(13Q22.1) WILD-TYPE                  13
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 32(13Q22.1) MUTATED                               213
  DEL PEAK 32(13Q22.1) WILD-TYPE                             312
D62V7, multiclass
                                 clus
vv                                DEL PEAK 32(13Q22.1) MUTATED
  ASTROCYTOMA                                               59
  GLIOBLASTOMA MULTIFORME (GBM)                             10
  OLIGOASTROCYTOMA                                          34
  OLIGODENDROGLIOMA                                         44
  TREATED PRIMARY GBM                                        5
  UNTREATED PRIMARY (DE NOVO) GBM                          213
                                 clus
vv                                DEL PEAK 32(13Q22.1) WILD-TYPE
  ASTROCYTOMA                                                135
  GLIOBLASTOMA MULTIFORME (GBM)                               20
  OLIGOASTROCYTOMA                                            95
  OLIGODENDROGLIOMA                                          145
  TREATED PRIMARY GBM                                         13
  UNTREATED PRIMARY (DE NOVO) GBM                            312
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 32(13Q22.1) MUTATED                                  1     6
  DEL PEAK 32(13Q22.1) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 32(13Q22.1) MUTATED                          26   326
  DEL PEAK 32(13Q22.1) WILD-TYPE                        45   633
D62V8, multiclass
                                  clus
vv                                 DEL PEAK 32(13Q22.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  26
  WHITE                                                     326
                                  clus
vv                                 DEL PEAK 32(13Q22.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    45
  WHITE                                                       633
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V9, binary
                                cls
clus                               0   1
  DEL PEAK 32(13Q22.1) MUTATED    10 314
  DEL PEAK 32(13Q22.1) WILD-TYPE  34 607
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(13Q22.1) MUTATED     10  314
  DEL PEAK 32(13Q22.1) WILD-TYPE   34  607
                        clus
vv                       DEL PEAK 32(13Q22.1) MUTATED
  HISPANIC OR LATINO                               10
  NOT HISPANIC OR LATINO                          314
                        clus
vv                       DEL PEAK 32(13Q22.1) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            607
[1] 2 2
[1] FALSE

Clustering(63) Variable = DEL PEAK 33(14Q13.1) MUTATION ANALYSIS
D63V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 33(14Q13.1) MUTATED    73 170
  DEL PEAK 33(14Q13.1) WILD-TYPE 407 428
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           243                            835 
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           170                            428 
$`DEL PEAK 33(14Q13.1) MUTATED`
TCGA-19-A6J4 TCGA-HT-A619 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5416 
        3.98        21.40        11.74         8.35         8.81         6.71 
TCGA-06-5856 TCGA-06-6388 TCGA-06-6697 TCGA-06-6699 TCGA-06-A5U1 TCGA-06-A6S1 
        3.75         5.23        12.85         1.55         1.87         2.56 
TCGA-06-A7TL TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3651 
       17.72        21.73        15.65        25.68         6.77        12.69 
TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0862 TCGA-14-0865 
       14.53        14.93        15.12         6.21         2.89        16.50 
TCGA-14-1455 TCGA-14-1459 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
        0.92        12.43        17.85         7.63         7.17        17.49 
TCGA-14-3477 TCGA-16-0848 TCGA-16-1045 TCGA-19-1390 TCGA-19-1791 TCGA-19-2623 
        3.78        17.59        29.03        25.38         0.13         7.53 
TCGA-19-2625 TCGA-19-2629 TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 
        4.08        24.23         6.64        22.49        14.96        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 
       13.87         9.73         9.86        40.54        21.30        18.08 
TCGA-27-2527 TCGA-28-1750 TCGA-28-1756 TCGA-28-2506 TCGA-28-2509 TCGA-32-1976 
       14.40         8.35         2.83         6.74         4.77         0.49 
TCGA-32-1980 TCGA-32-2615 TCGA-32-2634 TCGA-32-4210 TCGA-32-5222 TCGA-41-2573 
        1.18        15.95        22.78         3.72        19.23         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-4W-AA9R 
        9.53         0.99         4.44        11.84         0.20         4.08 
TCGA-74-6575 TCGA-74-6581 TCGA-74-6584 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 
       20.91         8.22         7.50         3.09         3.65         2.53 
TCGA-76-6191 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6664 TCGA-OX-A56R 
       16.70         2.70        17.06         8.35        36.20         5.92 
TCGA-CS-4941 TCGA-CS-6668 TCGA-DB-5279 TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 
        7.69        49.94        44.52        24.20        25.48        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-6397 TCGA-DU-6399 
       63.88        46.06        18.02         6.74        46.06        65.75 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7290 TCGA-DU-7302 
       11.47        62.96        14.99         6.54        10.36        60.30 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76R 
        5.10        23.74        19.13        22.29        26.76        21.30 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ 
      130.78        14.30        93.21        16.18        21.30        51.88 
TCGA-E1-A7YS TCGA-E1-A7Z2 TCGA-FG-7643 TCGA-FG-8191 TCGA-FG-A6J3 TCGA-FG-A70Z 
       15.32        13.08        20.09        32.61        22.26        10.78 
TCGA-HT-7616 TCGA-HT-7902 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A617 
        0.23        31.43        13.78        15.72         0.23        16.14 
TCGA-HT-A618 TCGA-HT-A61C TCGA-HW-A5KK TCGA-P5-A5EZ TCGA-P5-A77X TCGA-QH-A6CS 
       16.83        17.65        12.76         2.30         3.45        19.33 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CZ TCGA-RY-A840 TCGA-S9-A6TS TCGA-S9-A6WM 
       14.53        13.61         9.17        28.08        62.17        19.86 
TCGA-S9-A7IX TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A89V TCGA-TM-A84I TCGA-TQ-A7RN 
       26.93        27.16        10.39        18.71        28.08        33.73 
TCGA-TQ-A7RR TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CF TCGA-VV-A829 TCGA-WY-A858 
       25.87         0.10         7.89        20.02        37.05        43.96 
TCGA-WY-A85B TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0016 
       45.80        11.77        23.18        35.41        20.71        87.06 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0047 
       53.10        42.74        14.14        10.72        10.52        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0055 TCGA-02-0074 TCGA-02-0086 TCGA-02-0099 
        3.22        15.09         2.50        10.19         8.81         3.48 
TCGA-02-0107 TCGA-02-0113 TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 
       17.65        92.65         3.98         7.73        10.62        15.91 
TCGA-02-0332 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       25.71        11.34         9.27        16.21         3.35        16.80 
TCGA-02-2483 TCGA-02-2486 TCGA-06-0125 TCGA-06-0128 TCGA-06-0130 TCGA-06-0138 
       15.32        20.32        47.61        22.72        12.95        24.23 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0146 TCGA-06-0162 TCGA-06-0166 TCGA-06-0188 
       10.29        11.74        20.09         3.42         5.85        44.58 
TCGA-06-0194 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0241 TCGA-06-0397 
        4.67        24.16         0.72        19.82        48.69         9.01 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 TCGA-06-0745 
       72.36         4.70        12.62         5.75         2.10         7.86 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-1084 
        2.70         0.92        43.46        46.19         7.17        23.93 
TCGA-06-2561 TCGA-06-6389 TCGA-06-6390 TCGA-08-0245 TCGA-08-0347 TCGA-08-0352 
       17.65         7.79         5.39        37.84        25.71         1.28 
TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 TCGA-08-0512 TCGA-08-0520 TCGA-08-0524 
       14.93        13.97         0.72        42.15        10.75         7.27 
TCGA-12-0616 TCGA-12-0654 TCGA-12-0662 TCGA-12-0692 TCGA-12-0703 TCGA-12-0775 
       14.73         7.59        38.17         3.65        20.38         7.63 
TCGA-12-0821 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1096 
       10.62       127.59         5.82        33.21        15.98         9.11 
TCGA-12-1099 TCGA-14-0813 TCGA-14-0817 TCGA-15-0742 TCGA-15-1447 TCGA-19-1389 
        4.14         1.35         5.39        13.78        53.19         4.64 
TCGA-26-5133 TCGA-26-5134 TCGA-26-6173 TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 
       14.86         5.49         7.92         5.26        11.28        31.27 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5220 
       11.01        13.64        12.76 

$`DEL PEAK 33(14Q13.1) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 TCGA-06-5410 
       18.64        45.60        42.77        59.38        15.32         3.55 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        4.54         8.98         8.55         2.73         6.15         4.57 
TCGA-06-6695 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 
        8.32         4.77         4.77         4.96        26.79         3.12 
TCGA-06-A7TK TCGA-12-0615 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       14.60        15.35        14.73        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       15.22        10.95        34.92         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 TCGA-14-1034 
        0.95        23.05        13.78         3.25        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1794 
        7.10         1.15        30.18        40.96         6.67         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1827 TCGA-14-2555 TCGA-14-4157 TCGA-16-1047 
        1.97        17.79         5.88         7.96         3.42         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        8.61        14.27         3.39         3.65         7.17        12.66 
TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2631 
        3.25         9.67         4.87         1.08         0.16         7.00 
TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        7.04        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1443 
        1.78        14.07        16.80        17.79        28.54         7.13 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 
        9.37         9.40         8.88        18.97        19.33         5.06 
TCGA-27-1831 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       16.60        24.23        30.05        14.04        11.51        24.76 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 
       16.77        16.08         7.59         2.86        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.21         7.63         8.48         1.22         1.55 
TCGA-28-1757 TCGA-28-2502 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 
        0.13         0.66        15.39        21.07         0.10        15.85 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
       19.50         4.67        12.69        14.86        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       20.78        15.02         8.84        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-5651 TCGA-41-6646 
       19.86        10.85         0.85        13.35        15.12        12.46 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-76-4925 
        1.45        25.58         3.45         4.34        14.33         4.80 
TCGA-76-4926 TCGA-76-4931 TCGA-76-4935 TCGA-76-6192 TCGA-76-6286 TCGA-76-6656 
        4.54         9.17        36.85         3.29        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-RR-A6KA TCGA-RR-A6KC 
        5.03        23.90        34.45        18.64         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 
      117.50        43.89        36.36        60.10        40.18         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01        53.62         6.38        17.69        26.76        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       46.95        48.30        49.12       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 
       47.93        72.92        50.86        91.13        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       46.42        18.84        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       72.95        31.63        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       17.88        30.74        16.18        24.59        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       18.61        14.56        17.46        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       22.42        49.02        75.16         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7013 
        7.96         2.40       156.23       154.36       105.21         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 
      117.40        90.77        30.67        26.30         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       18.94        44.02        25.91        23.31        41.98         2.76 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K 
       33.96        25.55        21.57        95.11        20.98        11.41 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
       44.42        38.89         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YE 
       79.99        57.93       134.27        78.21        95.57        29.13 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YU TCGA-E1-A7YV 
        3.65        19.46        12.43        75.02         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
       36.82       146.14        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       17.88        22.55        20.61        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       16.01        14.96        22.52        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        23.70        14.76        21.53        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       28.54        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 
       22.06        45.99        56.09        57.60        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 
        3.68         5.33        35.47         3.72        11.28         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 
        0.23        29.59        34.19        28.27        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.93         1.81        17.52         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       31.63        28.87        20.71        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         7.99         2.37         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.96         7.59         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       12.23        19.20         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CY 
       12.62        15.85        14.04        14.83        12.23        13.41 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.70        11.08        12.99        88.83        94.03        32.65 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
       30.87         5.46         9.90         2.07        19.59        30.67 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       14.07        36.13         7.92        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z 
      169.84        99.06        30.05        98.63        31.59        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV 
       36.69        31.20        30.05        26.14        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CE 
       26.99        31.36        45.93        43.20        13.51        39.16 
TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       23.47        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 
       39.88        43.40        46.88        37.71        20.81         7.63 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0021 
        4.73        18.35        10.59        82.59        20.61        77.65 
TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 
       20.12        24.59        12.16        90.58         2.83         3.62 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       18.31         6.87        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
       51.32        57.76        16.96        27.02        65.00        11.67 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.18        99.98        15.65        48.95        16.54        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
       12.23         9.90         7.33         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-2470 TCGA-02-2485 
       12.39        14.50        10.55        47.11        12.92        15.45 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
        2.70         6.15        20.38         6.94         3.98        33.67 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 
       25.35        14.30        26.70        11.90         0.20         2.20 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       11.80        56.91        10.65        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       20.25         3.65        69.90        73.84        27.22        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.42        38.96         7.40         5.56         0.39         7.66 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0237 
        8.42         7.40        11.84         0.53        15.02        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 
       13.32        20.42        10.82         0.26         9.57         3.16 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
       35.11         5.75         9.80        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0747 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.88         2.70        40.41        16.57        20.78        26.76 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08        12.49         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
      120.56         7.36        22.68         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 
        8.42        12.16         9.80        29.23        65.33         8.42 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       12.23        18.02        15.35        12.56         4.27        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 
       19.59        58.68        19.33         4.80        15.98        18.41 
TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 
        7.56        12.99        34.92        10.45        94.78         0.10 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       25.97        26.66        12.13        28.41        15.06        53.85 
TCGA-12-0773 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.23         9.73        14.93        14.86        91.76        24.79 
TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        23.51        27.78        38.76         8.94        20.58 
TCGA-12-1090 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-14-0787 
        7.59        12.23        15.85        14.53         3.98         2.24 
TCGA-14-0789 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-1444 
       11.24         2.04        28.93        19.30         0.79        50.53 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 
       19.10        13.28         3.91        26.07        16.37        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       21.90         0.66        10.75         9.07         5.95        12.95 
TCGA-26-1442 TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
       31.33         1.58         2.33         7.30        14.93        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 
       14.53        11.77        23.44         5.16        22.68         5.42 
TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        7.36        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                         13.78                          16.93 
[1] "0.1 - 130.8 (13.8)" "0.0 - 211.2 (16.9)"
[1] "hr=" "1.8"
D63V2, continuous
D63V3, binary
                                cls
clus                               0   1
  DEL PEAK 33(14Q13.1) MUTATED   176  68
  DEL PEAK 33(14Q13.1) WILD-TYPE 397 444
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(14Q13.1) MUTATED    176   68
  DEL PEAK 33(14Q13.1) WILD-TYPE  397  444
                        clus
vv                       DEL PEAK 33(14Q13.1) MUTATED
  BRAIN                                           176
  CENTRAL NERVOUS SYSTEM                           68
                        clus
vv                       DEL PEAK 33(14Q13.1) WILD-TYPE
  BRAIN                                             397
  CENTRAL NERVOUS SYSTEM                            444
[1] 2 2
[1] FALSE
D63V4, binary
                                cls
clus                               0   1
  DEL PEAK 33(14Q13.1) MUTATED   108 136
  DEL PEAK 33(14Q13.1) WILD-TYPE 345 496
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(14Q13.1) MUTATED    108  136
  DEL PEAK 33(14Q13.1) WILD-TYPE  345  496
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  FEMALE                          108                            345
  MALE                            136                            496
[1] 2 2
[1] FALSE
D63V5, binary
                                cls
clus                               0   1
  DEL PEAK 33(14Q13.1) MUTATED    45 188
  DEL PEAK 33(14Q13.1) WILD-TYPE 213 582
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(14Q13.1) MUTATED     45  188
  DEL PEAK 33(14Q13.1) WILD-TYPE  213  582
     clus
vv    DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  NO                            45                            213
  YES                          188                            582
[1] 2 2
[1] FALSE
D63V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 33(14Q13.1) MUTATED            31                             6
  DEL PEAK 33(14Q13.1) WILD-TYPE         163                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 33(14Q13.1) MUTATED                 15                22
  DEL PEAK 33(14Q13.1) WILD-TYPE              114               167
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 33(14Q13.1) MUTATED                     6
  DEL PEAK 33(14Q13.1) WILD-TYPE                  12
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 33(14Q13.1) MUTATED                               164
  DEL PEAK 33(14Q13.1) WILD-TYPE                             361
D63V7, multiclass
                                 clus
vv                                DEL PEAK 33(14Q13.1) MUTATED
  ASTROCYTOMA                                               31
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                          15
  OLIGODENDROGLIOMA                                         22
  TREATED PRIMARY GBM                                        6
  UNTREATED PRIMARY (DE NOVO) GBM                          164
                                 clus
vv                                DEL PEAK 33(14Q13.1) WILD-TYPE
  ASTROCYTOMA                                                163
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           114
  OLIGODENDROGLIOMA                                          167
  TREATED PRIMARY GBM                                         12
  UNTREATED PRIMARY (DE NOVO) GBM                            361
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 33(14Q13.1) MUTATED                                  1     4
  DEL PEAK 33(14Q13.1) WILD-TYPE                                0    17
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 33(14Q13.1) MUTATED                          23   205
  DEL PEAK 33(14Q13.1) WILD-TYPE                        48   754
D63V8, multiclass
                                  clus
vv                                 DEL PEAK 33(14Q13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       4
  BLACK OR AFRICAN AMERICAN                                  23
  WHITE                                                     205
                                  clus
vv                                 DEL PEAK 33(14Q13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        17
  BLACK OR AFRICAN AMERICAN                                    48
  WHITE                                                       754
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V9, binary
                                cls
clus                               0   1
  DEL PEAK 33(14Q13.1) MUTATED     4 201
  DEL PEAK 33(14Q13.1) WILD-TYPE  40 720
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(14Q13.1) MUTATED      4  201
  DEL PEAK 33(14Q13.1) WILD-TYPE   40  720
                        clus
vv                       DEL PEAK 33(14Q13.1) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          201
                        clus
vv                       DEL PEAK 33(14Q13.1) WILD-TYPE
  HISPANIC OR LATINO                                 40
  NOT HISPANIC OR LATINO                            720
[1] 2 2
[1] FALSE

Clustering(64) Variable = DEL PEAK 34(14Q24.2) MUTATION ANALYSIS
D64V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 34(14Q24.2) MUTATED   106 183
  DEL PEAK 34(14Q24.2) WILD-TYPE 374 415
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           289                            789 
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           183                            415 
$`DEL PEAK 34(14Q24.2) MUTATED`
TCGA-19-A6J4 TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5411 
        3.98        21.40        42.77        59.38        11.74         8.35 
TCGA-06-5416 TCGA-06-5856 TCGA-06-5859 TCGA-06-6697 TCGA-06-6699 TCGA-06-A5U1 
        6.71         3.75         4.57        12.85         1.55         1.87 
TCGA-06-A6S1 TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1600 
        2.56        17.72        15.35        21.73        15.65        14.73 
TCGA-12-1602 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 
        6.77        12.69        14.53        14.93        15.12         6.21 
TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 TCGA-14-1401 TCGA-14-1453 TCGA-14-1455 
        2.89        16.50         1.12         3.75         1.15         0.92 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-3477 TCGA-14-4157 
       17.79        17.85         7.63         7.17         3.78         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-19-1390 TCGA-19-1791 TCGA-19-2623 TCGA-19-2625 
       17.59        29.03        25.38         0.13         7.53         4.08 
TCGA-19-2629 TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 TCGA-26-1439 TCGA-26-1440 
       24.23         6.64        22.49        14.96        13.87         9.73 
TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 TCGA-27-2527 TCGA-28-1750 
        9.86        40.54        21.30        18.08        14.40         8.35 
TCGA-28-1756 TCGA-28-2506 TCGA-28-2509 TCGA-32-1976 TCGA-32-1980 TCGA-32-2494 
        2.83         6.74         4.77         0.49         1.18        20.78 
TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       15.95        22.78        21.14         8.94         9.53         0.99 
TCGA-41-4097 TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 TCGA-76-6193 TCGA-76-6282 
        0.20         3.09         3.65         2.53         2.70        17.06 
TCGA-76-6285 TCGA-OX-A56R TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 
        8.35         5.92       117.50         7.69        43.89        60.10 
TCGA-CS-6668 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 
       49.94        44.52        18.84        24.20        25.48        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5855 TCGA-DU-5872 
       63.88        46.06        18.02         6.74         6.81        17.49 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6403 TCGA-DU-6408 TCGA-DU-6542 
       75.16        46.06        65.75        11.64       114.08         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7019 TCGA-DU-7290 
       11.47        62.96        14.99         6.54        26.30        10.36 
TCGA-DU-7298 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A6S7 
       18.94        60.30         5.10        23.74        19.13        20.98 
TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76R TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
       22.29        26.76        21.30        41.13        79.99        57.93 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YM TCGA-E1-A7YQ 
       95.57       130.78        14.30        93.21        21.30        51.88 
TCGA-E1-A7YS TCGA-E1-A7YV TCGA-E1-A7Z2 TCGA-EZ-7264 TCGA-FG-5963 TCGA-FG-7643 
       15.32        32.45        13.08        39.48        25.48        20.09 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MY TCGA-FG-A6J3 TCGA-HT-7477 TCGA-HT-7603 
       32.61        38.27        23.70        22.26        24.26        23.18 
TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7858 TCGA-HT-7902 
       17.29         0.23        31.69        14.96        50.63        31.43 
TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A615 TCGA-HT-A617 
       13.78        28.27        15.72         0.23        16.93        16.14 
TCGA-HT-A618 TCGA-HT-A61C TCGA-HW-7489 TCGA-HW-A5KK TCGA-P5-A5EV TCGA-P5-A5EX 
       16.83        17.65        41.49        12.76         0.23         7.99 
TCGA-P5-A5EZ TCGA-P5-A5F2 TCGA-P5-A77W TCGA-P5-A77X TCGA-QH-A6CS TCGA-QH-A6CV 
        2.30         7.96        19.20         3.45        19.33        14.53 
TCGA-QH-A6CW TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-R8-A6MK TCGA-RY-A83Z TCGA-RY-A840 
       13.61         9.17        14.53        88.83         9.90        28.08 
TCGA-S9-A6TS TCGA-S9-A6WD TCGA-S9-A6WM TCGA-S9-A6WP TCGA-S9-A7IX TCGA-S9-A7J0 
       62.17        75.25        19.86        18.64        26.93        20.02 
TCGA-S9-A7J1 TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 
        8.19        18.54        27.16        10.39        99.06        31.59 
TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84I TCGA-TM-A84Q TCGA-TQ-A7RF TCGA-TQ-A7RN 
       18.71        54.77        28.08        25.38        21.37        33.73 
TCGA-TQ-A7RR TCGA-TQ-A8XE TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CF TCGA-VV-A829 
       25.87        31.36         0.10         7.89        20.02        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-WY-A858 TCGA-WY-A85B TCGA-02-0007 TCGA-02-0010 
       16.01        23.21        43.96        45.80        23.18        35.41 
TCGA-02-0011 TCGA-02-0016 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0034 
       20.71        87.06        53.10        42.74        24.59        14.14 
TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0055 TCGA-02-0058 
       10.52        14.73         3.22        15.09         2.50         8.35 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0074 TCGA-02-0086 TCGA-02-0099 TCGA-02-0104 
        6.02        28.70        10.19         8.81         3.48        65.00 
TCGA-02-0107 TCGA-02-0113 TCGA-02-0258 TCGA-02-0266 TCGA-02-0281 TCGA-02-0324 
       17.65        92.65        16.54        17.72         3.98         7.73 
TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0432 TCGA-02-0446 TCGA-02-0456 
       10.62        15.91        25.71        47.11         9.27         3.35 
TCGA-02-2466 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0138 
       16.80        15.32        22.72        33.67        12.95        24.23 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0146 TCGA-06-0155 TCGA-06-0162 TCGA-06-0166 
       10.29        11.74        20.09        10.45         3.42         5.85 
TCGA-06-0171 TCGA-06-0188 TCGA-06-0194 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
       13.12        44.58         4.67        15.02        24.16         0.72 
TCGA-06-0221 TCGA-06-0241 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0644 
       19.82        48.69        72.36         4.70         9.57        12.62 
TCGA-06-0646 TCGA-06-0649 TCGA-06-0745 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.75         2.10         7.86         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-2561 TCGA-06-6389 TCGA-06-6390 TCGA-08-0245 TCGA-08-0380 
        7.17        17.65         7.79         5.39        37.84        14.93 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 TCGA-12-0616 
       13.97         0.72        42.15        58.68        10.75        14.73 
TCGA-12-0654 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0776 TCGA-12-0821 
        7.59        38.17        12.13         3.65         9.73        10.62 
TCGA-12-0827 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1096 TCGA-14-0813 
       38.76       127.59         5.82        33.21         9.11         1.35 
TCGA-14-0817 TCGA-15-1447 TCGA-19-0962 TCGA-19-1389 TCGA-26-5133 TCGA-26-5134 
        5.39        53.19         0.66         4.64        14.86         5.49 
TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5220 
        5.26        11.28        31.27        11.01        13.64        12.76 
TCGA-32-2616 
        7.36 

$`DEL PEAK 34(14Q24.2) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HW-7490 TCGA-06-1806 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 
       18.64        45.60        15.32         3.55         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 
        8.98         8.55         2.73         6.15         5.23         8.32 
TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S0 TCGA-06-A7TK 
        4.77         4.77         4.96        26.79         3.12        14.60 
TCGA-12-1599 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.68        59.77        44.02        26.93        15.22        10.95 
TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       34.92         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1402 
       13.78         3.25        26.33        15.95         1.38        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 
       58.78        23.11         7.10        30.18        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 
       12.43         0.99         1.97         5.88        17.49         7.96 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 
        6.41         8.61        14.27         3.39         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 
       12.66         3.25         9.67         4.87         1.08         0.16 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         7.04        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 
       12.10         1.78        14.07        16.80        17.79        28.54 
TCGA-26-1438 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       10.03         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 
       19.33         5.06        16.60        24.23        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.76        16.77        16.08         7.59         2.86 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         9.21         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-32-1970 TCGA-32-1973 
        1.22         1.55         0.13         0.66        15.39        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85        19.50         4.67        12.69        14.86 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 
       16.93        12.23        15.02         8.84        25.18         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
        4.44        11.84        15.12        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        7.50         4.80         4.54         9.17        36.85        16.70 
TCGA-76-6192 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        3.29        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4943 TCGA-CS-5393 
       18.64        36.20         6.28        20.55        36.36        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.26        21.01        53.62         6.38        17.69        26.76 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       37.38        46.95        48.30        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 
       75.25        47.93        72.92        50.86        91.13        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       78.28        46.42        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       72.95        31.63        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       17.88        30.74        16.18        24.59        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 
       18.61        14.56        17.46        13.38         8.45       182.33 
TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        1.22        87.45         7.04       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7013 
       94.52         7.96       156.23       154.36       105.21         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 
      117.40        90.77        30.67         7.96        94.32        44.02 
TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 
       25.91        23.31        41.98         2.76        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A76K TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       21.57        95.11        11.41        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
       51.52        37.38         7.50        44.42        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-A7YE TCGA-E1-A7YI 
       50.14        67.46       134.27        78.21        29.13         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YO TCGA-E1-A7YU TCGA-E1-A7YW 
       19.46        12.43        16.18        75.02         0.76        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O3 TCGA-F6-A8O4 
      146.14        73.48       145.05        32.35         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       47.77        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       41.33        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       10.72        18.38        18.71        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q 
       16.44        28.54        10.78        36.66        48.69         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        17.42         6.54         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 
        5.03        29.85       122.47         4.57         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       45.99        56.09        57.60        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 
        0.76        44.68         6.05        42.74         0.10         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       19.23        39.09         0.23         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       11.28         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-A4DV 
        2.50         5.56         0.23        29.59        34.19        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        2.70         1.81        17.52         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7493 
       11.05         0.10        56.58        45.44        68.32        69.27 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54        24.92        31.63 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW 
       28.87        20.71        19.00        14.40        14.40         6.71 
TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        2.37         9.44         5.88         7.59         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
        9.60         7.56        12.23         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CX 
        2.53        12.62        15.85        14.04        14.83        12.23 
TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       13.41        10.29        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       16.70        11.08        12.99        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
        5.46         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
      123.65       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY 
       26.47        18.61        14.07        36.13         7.92        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7R1 
       19.99         2.04        20.68        15.06        28.37       169.84 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       30.05        98.63        20.48        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S 
       24.16        40.83        24.79        33.24        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV 
       36.69        31.20        30.05        26.14        33.93        61.41 
TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CE TCGA-VM-A8CH 
       26.99        45.93        43.20        13.51        39.16        23.47 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85C 
        8.05        51.06        13.32        39.88        43.40        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       37.71        20.81         7.63        11.77         4.73        18.35 
TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0021 TCGA-02-0023 TCGA-02-0027 
       10.59        82.59        20.61        77.65        20.12        12.16 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
       90.58         2.83         3.62        10.72        18.31         6.87 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 
       12.59         6.54        19.86         9.57        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        20.84        27.25        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0106 
       12.62        51.32        57.76        16.96        27.02        11.67 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 
       23.18        99.98        15.65        48.95        16.93        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       14.47        13.87        14.20        15.95        12.23         9.90 
TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
        7.33         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0451 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 
       10.55        11.34        16.21        12.92        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 
       25.35        14.30        26.70        11.90         0.20         2.20 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.33        13.94         3.19        10.82         9.44        11.80 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 
       56.91        10.65        19.66         3.29         4.47         3.22 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.04        91.00         4.18        88.14        20.25         3.65 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       69.90        73.84        27.22        15.42        10.42        38.96 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.40         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 
       11.84         0.53        13.64        13.32        20.42        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 
        9.01         0.26         3.16        35.11         5.75         9.80 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 
       23.57        14.20        26.40        46.88         2.70         2.70 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       40.41        16.57        20.78        26.76        23.93         6.84 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        4.04        26.79        11.84        15.32        13.61        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08        12.49         4.93        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6693 
       16.64         5.98         4.37         0.43        31.50       120.56 
TCGA-06-6694 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        7.36        22.68         4.18       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        8.42        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 TCGA-08-0509 TCGA-08-0510 
        3.39        12.23        18.02        15.35        12.56         4.27 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       11.08        19.59        19.33         4.80         7.27        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0656 
       18.41         7.56        12.99        34.92        10.45        94.78 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
        0.10        25.97        26.66        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.85        43.23         7.63        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       24.79        18.48        23.51        27.78         8.94        20.58 
TCGA-12-1090 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 
        7.59        15.98        12.23        15.85        14.53         3.98 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 
        4.14         2.24        11.24         2.04        28.93        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        0.79        13.78        50.53        19.10        13.28         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 TCGA-19-1386 
       26.07        16.37        11.77        21.90        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-26-1442 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.95        12.95        31.33         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 
        7.30        14.93        17.88        14.53        11.77        23.44 
TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 
        5.16        22.68         5.42        11.38         5.42         3.75 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                         15.35                          16.18 
[1] "0.1 - 130.8 (15.3)" "0.0 - 211.2 (16.2)"
[1] "hr=" "1.3"
D64V2, continuous
D64V3, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q24.2) MUTATED   171 120
  DEL PEAK 34(14Q24.2) WILD-TYPE 402 392
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q24.2) MUTATED    171  120
  DEL PEAK 34(14Q24.2) WILD-TYPE  402  392
                        clus
vv                       DEL PEAK 34(14Q24.2) MUTATED
  BRAIN                                           171
  CENTRAL NERVOUS SYSTEM                          120
                        clus
vv                       DEL PEAK 34(14Q24.2) WILD-TYPE
  BRAIN                                             402
  CENTRAL NERVOUS SYSTEM                            392
[1] 2 2
[1] FALSE
D64V4, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q24.2) MUTATED   136 155
  DEL PEAK 34(14Q24.2) WILD-TYPE 317 477
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q24.2) MUTATED    136  155
  DEL PEAK 34(14Q24.2) WILD-TYPE  317  477
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  FEMALE                          136                            317
  MALE                            155                            477
[1] 2 2
[1] FALSE
D64V5, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q24.2) MUTATED    65 215
  DEL PEAK 34(14Q24.2) WILD-TYPE 193 555
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q24.2) MUTATED     65  215
  DEL PEAK 34(14Q24.2) WILD-TYPE  193  555
     clus
vv    DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  NO                            65                            193
  YES                          215                            555
[1] 2 2
[1] FALSE
D64V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 34(14Q24.2) MUTATED            53                             5
  DEL PEAK 34(14Q24.2) WILD-TYPE         141                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 34(14Q24.2) MUTATED                 28                39
  DEL PEAK 34(14Q24.2) WILD-TYPE              101               150
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 34(14Q24.2) MUTATED                     7
  DEL PEAK 34(14Q24.2) WILD-TYPE                  11
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 34(14Q24.2) MUTATED                               159
  DEL PEAK 34(14Q24.2) WILD-TYPE                             366
D64V7, multiclass
                                 clus
vv                                DEL PEAK 34(14Q24.2) MUTATED
  ASTROCYTOMA                                               53
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                          28
  OLIGODENDROGLIOMA                                         39
  TREATED PRIMARY GBM                                        7
  UNTREATED PRIMARY (DE NOVO) GBM                          159
                                 clus
vv                                DEL PEAK 34(14Q24.2) WILD-TYPE
  ASTROCYTOMA                                                141
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                           101
  OLIGODENDROGLIOMA                                          150
  TREATED PRIMARY GBM                                         11
  UNTREATED PRIMARY (DE NOVO) GBM                            366
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 34(14Q24.2) MUTATED                                  1     8
  DEL PEAK 34(14Q24.2) WILD-TYPE                                0    13
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 34(14Q24.2) MUTATED                          22   251
  DEL PEAK 34(14Q24.2) WILD-TYPE                        49   708
D64V8, multiclass
                                  clus
vv                                 DEL PEAK 34(14Q24.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       8
  BLACK OR AFRICAN AMERICAN                                  22
  WHITE                                                     251
                                  clus
vv                                 DEL PEAK 34(14Q24.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        13
  BLACK OR AFRICAN AMERICAN                                    49
  WHITE                                                       708
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V9, binary
                                cls
clus                               0   1
  DEL PEAK 34(14Q24.2) MUTATED     9 244
  DEL PEAK 34(14Q24.2) WILD-TYPE  35 677
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(14Q24.2) MUTATED      9  244
  DEL PEAK 34(14Q24.2) WILD-TYPE   35  677
                        clus
vv                       DEL PEAK 34(14Q24.2) MUTATED
  HISPANIC OR LATINO                                9
  NOT HISPANIC OR LATINO                          244
                        clus
vv                       DEL PEAK 34(14Q24.2) WILD-TYPE
  HISPANIC OR LATINO                                 35
  NOT HISPANIC OR LATINO                            677
[1] 2 2
[1] FALSE

Clustering(65) Variable = DEL PEAK 35(14Q31.3) MUTATION ANALYSIS
D65V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 35(14Q31.3) MUTATED   102 171
  DEL PEAK 35(14Q31.3) WILD-TYPE 378 427
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           273                            805 
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           171                            427 
$`DEL PEAK 35(14Q31.3) MUTATED`
TCGA-19-A6J4 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 TCGA-06-5416 TCGA-06-5856 
        3.98        42.77        59.38         8.35         6.71         3.75 
TCGA-06-5859 TCGA-06-6697 TCGA-06-6699 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-06-A7TL 
        4.57        12.85         1.55         1.87         2.56        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1602 TCGA-12-3651 TCGA-12-3652 
       15.35        21.73        15.65         6.77        12.69        34.92 
TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 
       14.93        15.12         6.21         2.89        16.50         1.12 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1821 TCGA-14-1823 TCGA-14-1829 TCGA-14-3477 
        1.15         0.92        17.79        17.85         7.17         3.78 
TCGA-14-4157 TCGA-16-1045 TCGA-19-1390 TCGA-19-1791 TCGA-19-2623 TCGA-19-2629 
        3.42        29.03        25.38         0.13         7.53        24.23 
TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 TCGA-19-A6J5 TCGA-26-1439 TCGA-26-1440 
        6.64        22.49        14.96        28.54        13.87         9.73 
TCGA-27-1832 TCGA-27-1834 TCGA-27-2519 TCGA-27-2527 TCGA-28-1750 TCGA-28-1756 
        9.86        40.54        18.08        14.40         8.35         2.83 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1976 TCGA-32-1980 TCGA-32-2615 TCGA-32-2634 
        6.74         4.77         0.49         1.18        15.95        22.78 
TCGA-32-4208 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-4097 TCGA-76-4928 
       21.14         8.94         9.53         0.99         0.20         3.09 
TCGA-76-4929 TCGA-76-4934 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-OX-A56R 
        3.65         2.53         2.70        17.06         8.35         5.92 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-6668 TCGA-DB-5279 TCGA-DB-A4XA 
      117.50         7.69        43.89        49.94        44.52        18.84 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5847 
       24.20        25.48        19.96        63.88        46.06        18.02 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6397 
       17.46         6.74         6.81        17.49        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6403 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7010 
       65.75        11.64       114.08         2.40        62.96        14.99 
TCGA-DU-7012 TCGA-DU-7290 TCGA-DU-7298 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 
        6.54        10.36        18.94        60.30         5.10        23.74 
TCGA-DU-8165 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76R TCGA-E1-5304 
       19.13        20.98        22.29        26.76        21.30        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YM 
       79.99        57.93       130.78        14.30        93.21        21.30 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YV TCGA-E1-A7Z2 TCGA-EZ-7264 TCGA-FG-5963 
       51.88        15.32        32.45        13.08        39.48        25.48 
TCGA-FG-7643 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MY TCGA-FG-A6J3 TCGA-HT-7477 
       20.09        32.61        38.27        23.70        22.26        24.26 
TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7902 TCGA-HT-8110 
       17.29         0.23        31.69        14.96        31.43        13.78 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A618 
       28.27        15.72         0.23        16.93        16.14        16.83 
TCGA-HT-A61C TCGA-HW-7489 TCGA-HW-A5KK TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EZ 
       17.65        41.49        12.76         0.23         7.99         2.30 
TCGA-P5-A5F2 TCGA-P5-A77W TCGA-P5-A77X TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW 
        7.96        19.20         3.45        19.33        14.53        13.61 
TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A870 TCGA-R8-A6MK TCGA-RY-A83Z TCGA-RY-A840 
        9.17        14.53        12.99        88.83         9.90        28.08 
TCGA-S9-A6TS TCGA-S9-A6WD TCGA-S9-A6WM TCGA-S9-A6WP TCGA-S9-A7IX TCGA-S9-A7IZ 
       62.17        75.25        19.86        18.64        26.93        19.99 
TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R8 
       20.02        18.54        27.16        10.39        99.06        31.59 
TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84I TCGA-TM-A84Q TCGA-TQ-A7RF TCGA-TQ-A7RN 
       18.71        54.77        28.08        25.38        21.37        33.73 
TCGA-TQ-A7RR TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CF 
       25.87        26.99        31.36         0.10         7.89        20.02 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-WY-A858 TCGA-WY-A85B TCGA-02-0007 
       37.05        16.01        23.21        43.96        45.80        23.18 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0024 TCGA-02-0025 TCGA-02-0034 TCGA-02-0039 
       35.41        20.71        53.10        42.74        14.14        10.52 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0055 TCGA-02-0058 TCGA-02-0060 
       14.73         3.22        15.09         2.50         8.35         6.02 
TCGA-02-0069 TCGA-02-0074 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0107 
       28.70        10.19         8.81        16.96         3.48        17.65 
TCGA-02-0113 TCGA-02-0258 TCGA-02-0266 TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 
       92.65        16.54        17.72         3.98         7.73        10.62 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0432 TCGA-02-0446 TCGA-02-0456 TCGA-02-2466 
       15.91        25.71        47.11         9.27         3.35        16.80 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 TCGA-06-0143 
       22.72        33.67        12.95        24.23        10.29        11.74 
TCGA-06-0146 TCGA-06-0162 TCGA-06-0166 TCGA-06-0171 TCGA-06-0188 TCGA-06-0194 
       20.09         3.42         5.85        13.12        44.58         4.67 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0241 TCGA-06-0409 TCGA-06-0410 
       24.16         0.72        19.82        48.69        72.36         4.70 
TCGA-06-0412 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 TCGA-06-0745 TCGA-06-0750 
        9.57        12.62         5.75         2.10         7.86         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-1084 TCGA-06-1804 TCGA-06-2561 
       43.46        46.19         7.17        23.93        13.61        17.65 
TCGA-06-6389 TCGA-06-6390 TCGA-08-0245 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 
        7.79         5.39        37.84        14.93        13.97         0.72 
TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 TCGA-12-0616 TCGA-12-0654 TCGA-12-0662 
       42.15        58.68        10.75        14.73         7.59        38.17 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0776 TCGA-12-0821 TCGA-12-0827 TCGA-12-1088 
       12.13         3.65         9.73        10.62        38.76       127.59 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1096 TCGA-14-0813 TCGA-14-0817 TCGA-19-1389 
        5.82        33.21         9.11         1.35         5.39         4.64 
TCGA-26-5133 TCGA-26-5134 TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 TCGA-28-5215 
       14.86         5.49         5.26        11.28        31.27        11.01 
TCGA-28-5216 TCGA-28-5220 TCGA-32-2616 
       13.64        12.76         7.36 

$`DEL PEAK 35(14Q31.3) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 
       18.64        21.40        45.60        15.32        11.74         3.55 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        4.54         8.81         8.98         8.55         2.73         6.15 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
        5.23         8.32         4.77         4.77         4.96        26.79 
TCGA-06-A6S0 TCGA-06-A7TK TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 
        3.12        14.60        25.68        14.73        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 
       26.93        15.22        10.95        14.53         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 
       11.97         0.95        23.05        13.78         3.25        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       15.95         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        7.10        30.18        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-16-0848 
        1.97         7.63         5.88        17.49         7.96        17.59 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        4.57        10.29        14.01         9.14        21.24        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 
        6.41         8.61        14.27         3.39         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 
       12.66         3.25         9.67         4.87         1.08         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        4.08         7.00         7.04        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I 
        4.73        12.10         1.78        14.07        16.80        17.79 
TCGA-26-1438 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       10.03         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
       19.33         5.06        16.60        24.23        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        16.77        16.08         7.59 
TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 
        2.86        15.78         0.20         2.53         9.21         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-32-1970 
        8.48         1.22         1.55         0.13         0.66        15.39 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
       21.07         0.10        15.85        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 
       14.86        16.93        12.23        20.78        15.02         8.84 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       25.18         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 
        0.85        13.35         4.44        11.84        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4931 
       14.33         8.22         7.50         4.80         4.54         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       36.85        16.70         3.29        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC 
       23.90        34.45        18.64        36.20         6.28        20.55 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB 
       50.86        91.13        36.56        78.28        46.42        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P 
       39.78        37.45        33.57        72.95        31.63        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5853 
       23.21        17.46        13.71        18.61        14.56        13.38 
TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        8.45       182.33        18.94        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 
       22.42        49.02         1.22        87.45         7.04       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 
       19.89        16.83        94.52         7.96        11.47       156.23 
TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      154.36       105.21         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 
       26.30         7.96        94.32        44.02        25.91        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
       41.98         2.76        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A76K TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       11.41        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
        7.50        44.42        38.89         0.56        50.14        67.46 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YE TCGA-E1-A7YI TCGA-E1-A7YJ 
      134.27        78.21        95.57        29.13         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YO TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY 
       12.43        16.18        75.02         0.76        36.82       146.14 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       73.48       145.05        32.35         0.23         0.20        47.77 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 
       18.44        15.35        17.88        22.55        20.61        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-A4MU 
       13.68        14.24        16.01        14.96        22.52        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.38        18.71        14.76        21.53        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 
       28.54        10.78        36.66        48.69         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75        17.42         6.54         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 
       29.85        23.18       122.47         4.57         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       45.99        56.09        57.60        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7690 
        0.76        44.68         6.05        42.74         0.10         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
        3.72        11.28         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.46         2.50         5.56         0.23        29.59        34.19 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J 
        5.33         2.70         1.81        17.52         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 
       15.35        11.05         0.10        56.58        45.44        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       31.63        28.87        20.71        19.00        14.40        14.40 
TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A5F6 
        6.71         2.37         9.44         5.88         7.59         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A780 TCGA-P5-A781 
       13.61         9.60         7.56        12.23         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU 
       15.16         2.53        12.62        15.85        14.04        14.83 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
       12.23        13.41        10.29        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       16.50        16.70        11.08        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
        5.46         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
      123.65       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY 
       26.47        18.61        14.07        36.13         7.92        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7R1 
        8.19         2.04        20.68        15.06        28.37       169.84 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       30.05        98.63        20.48        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S 
       24.16        40.83        24.79        33.24        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV 
       36.69        31.20        30.05        26.14        33.93        61.41 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VW-A8FI 
       45.93        43.20        13.51        39.16        23.47         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D 
       51.06        13.32        39.88        43.40        46.88        37.71 
TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 
       20.81         7.63        11.77         4.73        18.35        10.59 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 
       82.59        20.61        87.06        77.65        20.12        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       12.16        90.58         2.83         3.62        10.72        18.31 
TCGA-02-0046 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 
        6.87        12.59         6.54        19.86         9.57        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       26.43        25.05         5.49        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0102 TCGA-02-0104 
       22.72        12.62        51.32        57.76        27.02        65.00 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       11.67        23.18        99.98        15.65        48.95        16.93 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        9.90         7.33         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 
       14.50        10.55        11.34        16.21        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 
        6.94         3.98        25.35        14.30        26.70        11.90 
TCGA-06-0140 TCGA-06-0142 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
        0.20         2.20         2.33        17.79        10.09         8.61 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
       10.82         9.44        11.80        56.91        10.65        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.29         4.47         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       15.42        10.42        38.96         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.64        13.32        20.42        10.82         9.01         0.26 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
        3.16        35.11         5.75         9.80        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0879 TCGA-06-0881 
       26.40        46.88         2.70         2.70        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.78        26.76         6.84         4.04        26.79        11.84 
TCGA-06-1802 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
       15.32        33.90         1.08        12.49         4.93        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95        16.64         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
       31.50       120.56         7.36        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 
       37.58        22.29         3.39        12.23        18.02        15.35 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 
       12.56         4.27        11.08        19.59        19.33         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 
        7.27        15.98        18.41         7.56        12.99        34.92 
TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 
       10.45        94.78         0.10        25.97        26.66        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.41        15.06        53.85        43.23         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 
       14.86        91.76        24.79        18.48        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1090 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        8.94        20.58         7.59        15.98        12.23        15.85 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0867 
       14.53         3.98         4.14         2.24        11.24         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 
       53.19        13.28         3.91        26.07        16.37        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       21.90         0.66        10.75         9.07         5.95        12.95 
TCGA-26-1442 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 
       31.33         1.58         7.92         2.33         7.30        14.93 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 
       17.88        14.53        11.77        23.44         5.16        22.68 
TCGA-28-6450 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        5.42        11.38         5.42         3.75         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                        130.78                         211.17 
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                         15.72                          16.08 
[1] "0.1 - 130.8 (15.7)" "0.0 - 211.2 (16.1)"
[1] "hr=" "1.3"
D65V2, continuous
D65V3, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q31.3) MUTATED   159 116
  DEL PEAK 35(14Q31.3) WILD-TYPE 414 396
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q31.3) MUTATED    159  116
  DEL PEAK 35(14Q31.3) WILD-TYPE  414  396
                        clus
vv                       DEL PEAK 35(14Q31.3) MUTATED
  BRAIN                                           159
  CENTRAL NERVOUS SYSTEM                          116
                        clus
vv                       DEL PEAK 35(14Q31.3) WILD-TYPE
  BRAIN                                             414
  CENTRAL NERVOUS SYSTEM                            396
[1] 2 2
[1] FALSE
D65V4, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q31.3) MUTATED   129 146
  DEL PEAK 35(14Q31.3) WILD-TYPE 324 486
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q31.3) MUTATED    129  146
  DEL PEAK 35(14Q31.3) WILD-TYPE  324  486
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  FEMALE                          129                            324
  MALE                            146                            486
[1] 2 2
[1] FALSE
D65V5, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q31.3) MUTATED    60 204
  DEL PEAK 35(14Q31.3) WILD-TYPE 198 566
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q31.3) MUTATED     60  204
  DEL PEAK 35(14Q31.3) WILD-TYPE  198  566
     clus
vv    DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  NO                            60                            198
  YES                          204                            566
[1] 2 2
[1] FALSE
D65V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 35(14Q31.3) MUTATED            51                             6
  DEL PEAK 35(14Q31.3) WILD-TYPE         143                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 35(14Q31.3) MUTATED                 29                36
  DEL PEAK 35(14Q31.3) WILD-TYPE              100               153
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 35(14Q31.3) MUTATED                     8
  DEL PEAK 35(14Q31.3) WILD-TYPE                  10
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 35(14Q31.3) MUTATED                               145
  DEL PEAK 35(14Q31.3) WILD-TYPE                             380
D65V7, multiclass
                                 clus
vv                                DEL PEAK 35(14Q31.3) MUTATED
  ASTROCYTOMA                                               51
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                          29
  OLIGODENDROGLIOMA                                         36
  TREATED PRIMARY GBM                                        8
  UNTREATED PRIMARY (DE NOVO) GBM                          145
                                 clus
vv                                DEL PEAK 35(14Q31.3) WILD-TYPE
  ASTROCYTOMA                                                143
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           100
  OLIGODENDROGLIOMA                                          153
  TREATED PRIMARY GBM                                         10
  UNTREATED PRIMARY (DE NOVO) GBM                            380
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 35(14Q31.3) MUTATED                                  1     6
  DEL PEAK 35(14Q31.3) WILD-TYPE                                0    15
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 35(14Q31.3) MUTATED                          24   235
  DEL PEAK 35(14Q31.3) WILD-TYPE                        47   724
D65V8, multiclass
                                  clus
vv                                 DEL PEAK 35(14Q31.3) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       6
  BLACK OR AFRICAN AMERICAN                                  24
  WHITE                                                     235
                                  clus
vv                                 DEL PEAK 35(14Q31.3) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        15
  BLACK OR AFRICAN AMERICAN                                    47
  WHITE                                                       724
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V9, binary
                                cls
clus                               0   1
  DEL PEAK 35(14Q31.3) MUTATED    10 230
  DEL PEAK 35(14Q31.3) WILD-TYPE  34 691
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(14Q31.3) MUTATED     10  230
  DEL PEAK 35(14Q31.3) WILD-TYPE   34  691
                        clus
vv                       DEL PEAK 35(14Q31.3) MUTATED
  HISPANIC OR LATINO                               10
  NOT HISPANIC OR LATINO                          230
                        clus
vv                       DEL PEAK 35(14Q31.3) WILD-TYPE
  HISPANIC OR LATINO                                 34
  NOT HISPANIC OR LATINO                            691
[1] 2 2
[1] FALSE

Clustering(66) Variable = DEL PEAK 36(15Q14) MUTATION ANALYSIS
D66V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 36(15Q14) MUTATED    63 150
  DEL PEAK 36(15Q14) WILD-TYPE 417 448
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         213                          865 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         150                          448 
$`DEL PEAK 36(15Q14) MUTATED`
TCGA-HT-A619 TCGA-06-5413 TCGA-06-5416 TCGA-06-5856 TCGA-06-A5U1 TCGA-06-A6S0 
       21.40         8.81         6.71         3.75         1.87         3.12 
TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1598 TCGA-12-1600 TCGA-12-1602 TCGA-12-3646 
       14.60        17.72        15.65        14.73         6.77        44.02 
TCGA-12-3648 TCGA-12-3651 TCGA-14-0736 TCGA-14-0783 TCGA-14-1459 TCGA-14-1794 
       26.93        12.69        15.12         6.21        12.43         0.99 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1063 TCGA-19-0963 TCGA-19-1390 TCGA-19-1392 
       17.59        29.03        13.97        14.27        25.38         3.65 
TCGA-19-2629 TCGA-19-4065 TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 
       24.23         7.04         1.78        22.49        14.96        10.03 
TCGA-26-1439 TCGA-27-1830 TCGA-27-1834 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 
       13.87         5.06        40.54        18.08         7.59         2.86 
TCGA-28-1746 TCGA-28-1750 TCGA-28-1756 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        0.20         8.35         2.83        15.39        21.07         0.49 
TCGA-32-2494 TCGA-32-2634 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-41-2571 
       20.78        22.78         3.72        12.59        10.85         0.85 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3915 TCGA-41-5651 TCGA-4W-AA9R 
        8.94         9.53         0.99        11.84        15.12         4.08 
TCGA-4W-AA9S TCGA-74-6578 TCGA-76-4925 TCGA-76-4929 TCGA-76-4935 TCGA-76-6191 
        1.45        14.33         4.80         3.65        36.85        16.70 
TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 TCGA-DB-5274 TCGA-DB-5279 TCGA-DB-A4XA 
        2.70         8.35        20.98        75.25        44.52        18.84 
TCGA-DB-A4XH TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A7UT TCGA-DU-6393 
       31.63        19.96        63.88        30.21        17.46        52.11 
TCGA-DU-6400 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7299 TCGA-DU-8158 TCGA-DU-A6S3 
        1.22        62.96        14.99        44.02         5.10        21.57 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TC TCGA-E1-5311 TCGA-E1-A7YD TCGA-E1-A7YK 
       21.30        17.98        37.38       134.27        14.30        12.43 
TCGA-E1-A7YL TCGA-E1-A7YS TCGA-E1-A7YV TCGA-FG-6688 TCGA-FG-7634 TCGA-FG-7636 
       16.18        15.32        32.45        18.77        15.35        17.88 
TCGA-FG-A4MW TCGA-HT-7468 TCGA-HT-7480 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7616 
       18.38         6.67        75.19        17.29        45.99         0.23 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8104 TCGA-HT-8563 TCGA-HT-A618 TCGA-HT-A61B 
       16.24         9.40        12.23        28.27        16.83        17.52 
TCGA-HT-A74H TCGA-HT-A74K TCGA-HW-7489 TCGA-P5-A5EZ TCGA-P5-A77W TCGA-QH-A65S 
        2.43        15.35        41.49         2.30        19.20         2.53 
TCGA-QH-A6X8 TCGA-RY-A83X TCGA-S9-A6TS TCGA-S9-A6U2 TCGA-S9-A6WD TCGA-S9-A6WI 
       16.73        30.87        62.17        29.85        75.25        84.99 
TCGA-S9-A7QZ TCGA-TM-A7C5 TCGA-TQ-A7RO TCGA-VM-A8CF TCGA-VV-A86M TCGA-W9-A837 
       27.16        49.32        31.20        20.02        16.01        51.06 
TCGA-WY-A85C TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0011 
       46.88        20.81         7.63        11.77         4.73        20.71 
TCGA-02-0016 TCGA-02-0024 TCGA-02-0026 TCGA-02-0034 TCGA-02-0038 TCGA-02-0047 
       87.06        53.10        24.59        14.14        10.72        14.73 
TCGA-02-0048 TCGA-02-0054 TCGA-02-0074 TCGA-02-0079 TCGA-02-0084 TCGA-02-0087 
        3.22         6.54        10.19        27.25        12.62        57.76 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0258 TCGA-02-0269 TCGA-02-0281 
       23.18        92.65        15.65        16.54        10.75         3.98 
TCGA-02-0321 TCGA-02-0324 TCGA-02-2470 TCGA-02-2483 TCGA-06-0119 TCGA-06-0124 
        9.90         7.73        12.92        15.32         2.70        20.38 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0141 TCGA-06-0166 TCGA-06-0174 TCGA-06-0177 
       22.72        33.67        10.29         5.85         3.22         4.18 
TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0213 TCGA-06-0216 
       44.58        10.42        38.96         0.39         0.53        24.16 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0402 TCGA-06-0410 TCGA-06-0645 TCGA-06-0646 
       13.64        13.32         0.26         4.70         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0745 TCGA-06-0875 TCGA-06-1801 
        9.80         2.10        14.20         7.86        43.46        11.84 
TCGA-06-2558 TCGA-06-2562 TCGA-06-6694 TCGA-08-0246 TCGA-08-0344 TCGA-08-0348 
       12.49        12.56         7.36         4.18       115.86        12.16 
TCGA-08-0349 TCGA-08-0355 TCGA-08-0359 TCGA-08-0386 TCGA-08-0510 TCGA-08-0525 
        9.80        24.56         3.39        18.02         4.27        15.98 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0707 TCGA-12-0775 TCGA-12-0821 TCGA-12-1088 
       12.99        34.92        28.41         7.63        10.62       127.59 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-14-0817 TCGA-14-0867 TCGA-15-1447 
        9.11        14.53         4.14         5.39         2.04        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-1385 TCGA-19-1387 
       13.28         3.91        26.07        16.37        10.75         5.95 
TCGA-19-1388 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5215 TCGA-28-5219 
       12.95         2.33         7.30         5.26        11.01        22.68 
TCGA-32-2616 TCGA-76-6283 TCGA-76-6660 
        7.36         5.42         3.75 

$`DEL PEAK 36(15Q14) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       20.45        18.64        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 
       11.74         3.55         8.35         4.54         8.98         8.55 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 
        2.73         6.15         4.57         5.23         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A6S1 
        4.77         1.55         4.77         4.96        26.79         2.56 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 TCGA-12-3644 TCGA-12-3649 TCGA-12-3650 
       15.35        21.73        25.68        59.77        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 
        0.95        23.05        13.78         3.25         2.89        16.50 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       26.33        15.95         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       40.96         6.67         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 
        4.57        10.29        14.01         9.14        21.24         6.41 
TCGA-19-0960 TCGA-19-0964 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        8.61         3.39         7.17        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1440 
       12.10        14.07        16.80        17.79        28.54         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX 
        7.13         9.37         9.40         8.88        18.97        19.33 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.60         9.86        24.23        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2527 TCGA-27-2528 
       11.51        24.76        16.77        16.08        14.40        15.78 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.21         7.63         8.48         1.22         1.55 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1977 TCGA-32-1978 
        0.13         0.66         6.74         4.77         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 
       12.23        15.02        15.95         8.84        25.18        21.14 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2572 TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 
       19.86        19.23        13.35         4.44         0.20        12.46 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 
       25.58         3.45        20.91         4.34         8.22         7.50 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-6192 TCGA-76-6282 
        4.54         3.09         9.17         2.53         3.29        17.06 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 
       49.94        49.12       122.73        81.96        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB 
       50.86        91.13        36.56        78.28        46.42        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O 
       39.78        37.45        33.57        72.95        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       16.18        46.06        24.59        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       54.25        23.21        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16       211.17        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       75.16        46.06        65.75        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
        2.40        11.47       156.23       154.36       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
        7.96        94.32        18.94        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T8 
       95.11        20.98        22.29        11.41        26.76       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ 
       84.33        51.52         7.50        44.42        38.89         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 
       50.14        67.46        41.13        79.99        57.93        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       95.57       130.78        29.13        93.21         3.65        19.46 
TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YU TCGA-E1-A7YW TCGA-E1-A7YY 
       21.30        75.02        51.88         0.76        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 
        0.20        47.77        25.48        52.21        36.82        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       42.54        41.33        18.44        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       32.61        38.27        10.72        18.71        23.70        14.76 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 
       36.66        48.69         5.72        27.52         0.10        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 
        6.54        24.26         6.38        40.34        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 
        4.57         3.16        22.06        56.09        57.60        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       31.43         1.64        63.55         0.10        37.87        33.01 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
        0.23        29.59        34.19        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74J 
        2.70        16.93         1.81        16.14        17.65        10.52 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7493 
       11.05         0.10        56.58        45.44        68.32        69.27 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54        24.92        31.63 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        28.87        20.71        19.00        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         7.99         2.37         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.96         7.59         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V 
       12.23         3.45         2.37         4.41        15.16        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23        13.41         9.17        10.29        14.53        16.34 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       94.03        32.65         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        87.12        18.77        41.10        40.93 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U5 TCGA-S9-A6U6 
       35.38        36.82        24.39        25.81        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG 
       98.24        95.93         5.85       123.65       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       28.37       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA 
       31.59        18.71        20.48        54.77        48.33        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RP 
        2.04        40.41        44.09        36.69        33.73        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       45.93        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 
       23.47        37.05        23.21         8.05        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85D TCGA-02-0006 TCGA-02-0007 
       39.88        43.40        45.80        37.71        18.35        23.18 
TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 TCGA-02-0021 TCGA-02-0023 
       10.59        35.41        82.59        20.61        77.65        20.12 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0039 
       42.74        12.16        90.58         2.83         3.62        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 
       18.31         6.87        15.09        12.59         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 
       25.05         5.49        20.84        89.72        22.72        51.32 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
        8.81        16.96         3.48        27.02        65.00        11.67 
TCGA-02-0107 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 
       17.65        99.98        48.95        16.93        17.72        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0325 TCGA-02-0326 
       13.87        14.20        15.95        12.23        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.27        16.21 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 TCGA-06-0125 
        3.35        16.80        15.45        20.32         6.15        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        6.94         3.98        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       24.23        11.90         0.20         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         3.42        56.91        10.65        19.66         3.29 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
       13.12         4.47         4.04        91.00        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0194 
        3.65        69.90        73.84        27.22        15.42         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        7.40         5.56         7.66         8.42         7.40        11.84 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       15.02         0.72        19.82        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        9.01        72.36         9.57         3.16        35.11        12.62 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       23.57        26.40        46.88         2.70         2.70         0.92 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84         4.04        26.79        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 
       33.90         1.08         4.93        17.65        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-6389 
       16.64         5.98         4.37         0.43        31.50         7.79 
TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0245 TCGA-08-0345 TCGA-08-0346 
        5.39       120.56        22.68        37.84         1.74         8.42 
TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       25.71        29.23        65.33         1.28         8.42        17.95 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       31.10        37.58        22.29        12.23        14.93        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       13.97         0.72        12.56        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       58.68        19.33        10.75         4.80         7.27        18.41 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        7.56        14.73        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       15.06        53.85        43.23         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       91.76        24.79        18.48        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
        8.94        20.58         5.82         7.59        33.21        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
       12.23        15.85         3.98         2.24        11.24         1.35 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       28.93        19.30         0.79        13.78        50.53        19.10 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1386 TCGA-19-1389 TCGA-26-1442 
       11.77        21.90         0.66         9.07         4.64        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-28-5204 TCGA-28-5207 
       14.86         5.49         1.58         7.92        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       17.88        14.53        11.77        31.27        23.44        13.64 
TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-76-6280 TCGA-81-5910 TCGA-81-5911 
        5.16        12.76         5.42        11.38         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                        0.20                         0.03 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                      134.27                       211.17 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                        14.2                         16.8 
[1] "0.2 - 134.3 (14.2)" "0.0 - 211.2 (16.8)"
[1] "hr=" "1.7"
D66V2, continuous
D66V3, binary
                              cls
clus                             0   1
  DEL PEAK 36(15Q14) MUTATED   154  61
  DEL PEAK 36(15Q14) WILD-TYPE 419 451
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 36(15Q14) MUTATED    154   61
  DEL PEAK 36(15Q14) WILD-TYPE  419  451
                        clus
vv                       DEL PEAK 36(15Q14) MUTATED
  BRAIN                                         154
  CENTRAL NERVOUS SYSTEM                         61
                        clus
vv                       DEL PEAK 36(15Q14) WILD-TYPE
  BRAIN                                           419
  CENTRAL NERVOUS SYSTEM                          451
[1] 2 2
[1] FALSE
D66V4, binary
                              cls
clus                             0   1
  DEL PEAK 36(15Q14) MUTATED    84 131
  DEL PEAK 36(15Q14) WILD-TYPE 369 501
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 36(15Q14) MUTATED     84  131
  DEL PEAK 36(15Q14) WILD-TYPE  369  501
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  FEMALE                         84                          369
  MALE                          131                          501
[1] 2 2
[1] FALSE
D66V5, binary
                              cls
clus                             0   1
  DEL PEAK 36(15Q14) MUTATED    47 155
  DEL PEAK 36(15Q14) WILD-TYPE 211 615
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 36(15Q14) MUTATED     47  155
  DEL PEAK 36(15Q14) WILD-TYPE  211  615
     clus
vv    DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  NO                          47                          211
  YES                        155                          615
[1] 2 2
[1] FALSE
D66V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 36(15Q14) MUTATED            25                            10
  DEL PEAK 36(15Q14) WILD-TYPE         169                            20
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 36(15Q14) MUTATED                 14                22
  DEL PEAK 36(15Q14) WILD-TYPE              115               167
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 36(15Q14) MUTATED                     4
  DEL PEAK 36(15Q14) WILD-TYPE                  14
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 36(15Q14) MUTATED                               140
  DEL PEAK 36(15Q14) WILD-TYPE                             385
D66V7, multiclass
                                 clus
vv                                DEL PEAK 36(15Q14) MUTATED
  ASTROCYTOMA                                             25
  GLIOBLASTOMA MULTIFORME (GBM)                           10
  OLIGOASTROCYTOMA                                        14
  OLIGODENDROGLIOMA                                       22
  TREATED PRIMARY GBM                                      4
  UNTREATED PRIMARY (DE NOVO) GBM                        140
                                 clus
vv                                DEL PEAK 36(15Q14) WILD-TYPE
  ASTROCYTOMA                                              169
  GLIOBLASTOMA MULTIFORME (GBM)                             20
  OLIGOASTROCYTOMA                                         115
  OLIGODENDROGLIOMA                                        167
  TREATED PRIMARY GBM                                       14
  UNTREATED PRIMARY (DE NOVO) GBM                          385
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 36(15Q14) MUTATED                                  0     6
  DEL PEAK 36(15Q14) WILD-TYPE                                1    15
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 36(15Q14) MUTATED                          14   186
  DEL PEAK 36(15Q14) WILD-TYPE                        57   773
D66V8, multiclass
                                  clus
vv                                 DEL PEAK 36(15Q14) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          0
  ASIAN                                                     6
  BLACK OR AFRICAN AMERICAN                                14
  WHITE                                                   186
                                  clus
vv                                 DEL PEAK 36(15Q14) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                      15
  BLACK OR AFRICAN AMERICAN                                  57
  WHITE                                                     773
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V9, binary
                              cls
clus                             0   1
  DEL PEAK 36(15Q14) MUTATED     7 187
  DEL PEAK 36(15Q14) WILD-TYPE  37 734
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 36(15Q14) MUTATED      7  187
  DEL PEAK 36(15Q14) WILD-TYPE   37  734
                        clus
vv                       DEL PEAK 36(15Q14) MUTATED
  HISPANIC OR LATINO                              7
  NOT HISPANIC OR LATINO                        187
                        clus
vv                       DEL PEAK 36(15Q14) WILD-TYPE
  HISPANIC OR LATINO                               37
  NOT HISPANIC OR LATINO                          734
[1] 2 2
[1] FALSE

Clustering(67) Variable = DEL PEAK 37(16P12.2) MUTATION ANALYSIS
D67V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 37(16P12.2) MUTATED    20  93
  DEL PEAK 37(16P12.2) WILD-TYPE 460 505
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                           113                            965 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                            93                            505 
$`DEL PEAK 37(16P12.2) MUTATED`
TCGA-CS-6665 TCGA-06-5418 TCGA-06-6698 TCGA-06-6700 TCGA-06-A5U1 TCGA-06-A6S0 
       51.55         2.73         4.77         4.77         1.87         3.12 
TCGA-06-A6S1 TCGA-12-1600 TCGA-12-3649 TCGA-12-3651 TCGA-12-3653 TCGA-12-5301 
        2.56        14.73        15.22        12.69        14.53         2.04 
TCGA-14-0736 TCGA-14-0812 TCGA-14-1823 TCGA-19-1392 TCGA-19-1786 TCGA-19-2620 
       15.12         3.25        17.85         3.65         7.17         4.87 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
        4.73         1.78        22.49        40.54        21.30        30.05 
TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1753 TCGA-32-1978 TCGA-32-1980 
       16.77         7.59         8.35         1.22        15.85         1.18 
TCGA-32-2494 TCGA-32-4210 TCGA-41-3392 TCGA-41-3915 TCGA-74-6575 TCGA-76-4925 
       20.78         3.72         0.99        11.84        20.91         4.80 
TCGA-76-4928 TCGA-76-6191 TCGA-76-6282 TCGA-CS-5397 TCGA-DB-5277 TCGA-DB-5281 
        3.09        16.70        17.06         6.38        50.86        78.28 
TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-7006 TCGA-DU-7018 TCGA-DU-8165 TCGA-E1-5304 
       30.21        18.02        11.47        30.67        19.13        41.13 
TCGA-E1-5307 TCGA-E1-A7YQ TCGA-FG-A4MW TCGA-HT-7477 TCGA-HT-7689 TCGA-HT-8564 
       57.93        51.88        18.38        24.26        14.96        15.72 
TCGA-P5-A780 TCGA-S9-A6U0 TCGA-S9-A7IX TCGA-S9-A89V TCGA-TM-A84I TCGA-TQ-A7RM 
        2.37        24.39        26.93        18.71        28.08        36.69 
TCGA-02-0025 TCGA-02-0052 TCGA-02-0055 TCGA-02-0074 TCGA-02-0116 TCGA-02-0258 
       42.74        12.59         2.50        10.19        48.95        16.54 
TCGA-02-0266 TCGA-02-0281 TCGA-02-0337 TCGA-02-0456 TCGA-02-2486 TCGA-06-0132 
       17.72         3.98        25.12         3.35        20.32        25.35 
TCGA-06-0164 TCGA-06-0168 TCGA-06-0171 TCGA-06-0177 TCGA-06-0214 TCGA-06-0216 
       56.91        19.66        13.12         4.18        15.02        24.16 
TCGA-06-0221 TCGA-06-0394 TCGA-06-0410 TCGA-06-0414 TCGA-06-0645 TCGA-06-0649 
       19.82        10.82         4.70        35.11         5.75         2.10 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0879 TCGA-06-0882 TCGA-06-1087 
       14.20        26.40        46.88        40.41        20.78         4.04 
TCGA-06-2557 TCGA-06-2569 TCGA-06-6389 TCGA-08-0347 TCGA-08-0353 TCGA-08-0386 
        1.08         0.43         7.79        25.71         8.42        18.02 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0525 TCGA-12-0619 
        0.72        12.56         4.27        11.08        15.98        34.92 
TCGA-12-0620 TCGA-12-0776 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-1099 
       10.45         9.73        23.51        27.78        38.76         4.14 
TCGA-14-0813 TCGA-14-0871 TCGA-19-1389 TCGA-28-5204 TCGA-28-5216 
        1.35        28.93         4.64        14.93        13.64 

$`DEL PEAK 37(16P12.2) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         3.75         6.15         4.57         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A7TK 
        8.32        12.85         1.55         4.96        26.79        14.60 
TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 
       17.72        15.35        21.73        15.65        25.68         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3652 TCGA-12-5295 
       59.77        44.02        26.93        10.95        34.92        14.93 
TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 
        3.22        11.97         0.95         6.21        23.05        13.78 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 
        2.89        16.50        26.33        15.95         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.05        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.18         0.92        40.96         6.67        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.97        17.79         7.63         5.88         7.17        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.96         3.78         3.42        17.59        29.03         4.57 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
       10.29        14.01         9.14        21.24        13.97         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 TCGA-19-1787 TCGA-19-1789 
        8.61        14.27         3.39        25.38        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         7.04         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I 
       18.90        12.10        14.07        16.80        14.96        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       28.54        10.03        13.87         9.73         7.13         9.37 
TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 
        9.40         8.88        18.97        19.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
        9.86        24.23        14.04        11.51        24.76        18.08 
TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       16.08         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        9.21         7.63         8.48         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        0.66         6.74         4.77        15.39        21.07         0.49 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
        0.10        19.50         4.67        12.69        14.86        16.93 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       21.14        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
       13.35         8.94         9.53         4.44         0.20        15.12 
TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 
       12.46         4.08         1.45        25.58         3.45         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 
       14.33         8.22         7.50         4.54         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 
        2.53        36.85         3.29         2.70         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       17.69        26.76        37.38        46.95        48.30        49.94 
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.12       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       91.13        44.52        36.56        46.42        18.84        30.21 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        19.96        63.88        46.06        24.59 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       13.71        18.61        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84       117.40        90.77        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
        7.50        44.42        38.89         0.56        50.14        67.46 
TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       79.99       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       21.30        75.02        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ 
       10.72        18.71        23.70        14.76        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74         0.10        31.69         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       34.19        28.27         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
        1.81        16.14        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        68.32        69.27        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54        24.92        31.63        12.76        28.87        20.71 
TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       19.00        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         9.44         5.88         7.96         7.59 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        3.45         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       41.10        40.93        35.38        36.82        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
        7.92        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z 
       10.39        99.06        30.05        98.63        31.59        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84L 
       16.18        59.05        40.64        30.44        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 
TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
        7.63        11.77         4.73        18.35        23.18        10.59 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
       35.41        20.71        82.59        20.61        87.06        77.65 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       20.12        53.10        24.59        12.16        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.62        10.72        10.52        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       14.73         3.22        15.09         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        20.84        27.25        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.18        92.65        99.98 
TCGA-02-0115 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       15.65        16.93        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.90         7.73        10.62         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91        25.71         4.37        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 
       10.55        47.11        11.34         9.27        16.21        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.32        15.45         2.70         6.15        20.38 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.61         6.94         3.98        22.72        33.67        12.95 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.30        26.70        24.23        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        17.79        10.09 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        8.61        19.46        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 
        3.19        10.82         9.44        11.80         3.42        10.65 
TCGA-06-0166 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        5.85         3.29         4.47         3.22         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.53         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
        9.01         0.26        72.36         9.57         3.16        12.62 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        5.75         9.80        23.57         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0881 TCGA-06-0939 
        0.92        43.46        46.19         7.17        16.57        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6390 
        5.95        16.64         5.98         4.37        31.50         5.39 
TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
      120.56         7.36        22.68        37.84         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        1.74         8.42        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0512 
        3.39        12.23        14.93        15.35        13.97        42.15 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0654 TCGA-12-0656 
       18.41         7.56        14.73        12.99         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.94        20.58       127.59         5.82         7.59        33.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       15.98        12.23        15.85         9.11        14.53         3.98 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 
        2.24        11.24         5.39         2.04        19.30         0.79 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       13.78        50.53        19.10        53.19        13.28         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 
       26.07        16.37        11.77        21.90         0.66        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        9.07         5.95        12.95        31.33        14.86         5.49 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 
        1.58         7.92         2.33         7.30         5.26        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88        14.53        11.77        31.27        23.44        11.01 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 
        5.16        22.68        12.76         5.42         7.36        11.38 
TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        5.42         3.75         1.61        17.72        26.30 

  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                          0.43                           0.03 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                         78.28                         211.17 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                         14.96                          16.18 
[1] "0.4 - 78.3 (15.0)"  "0.0 - 211.2 (16.2)"
[1] "hr=" "2"  
D67V2, continuous
D67V3, binary
                                cls
clus                               0   1
  DEL PEAK 37(16P12.2) MUTATED    92  22
  DEL PEAK 37(16P12.2) WILD-TYPE 481 490
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(16P12.2) MUTATED     92   22
  DEL PEAK 37(16P12.2) WILD-TYPE  481  490
                        clus
vv                       DEL PEAK 37(16P12.2) MUTATED
  BRAIN                                            92
  CENTRAL NERVOUS SYSTEM                           22
                        clus
vv                       DEL PEAK 37(16P12.2) WILD-TYPE
  BRAIN                                             481
  CENTRAL NERVOUS SYSTEM                            490
[1] 2 2
[1] FALSE
D67V4, binary
                                cls
clus                               0   1
  DEL PEAK 37(16P12.2) MUTATED    43  71
  DEL PEAK 37(16P12.2) WILD-TYPE 410 561
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(16P12.2) MUTATED     43   71
  DEL PEAK 37(16P12.2) WILD-TYPE  410  561
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  FEMALE                           43                            410
  MALE                             71                            561
[1] 2 2
[1] FALSE
D67V5, binary
                                cls
clus                               0   1
  DEL PEAK 37(16P12.2) MUTATED    19  90
  DEL PEAK 37(16P12.2) WILD-TYPE 239 680
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(16P12.2) MUTATED     19   90
  DEL PEAK 37(16P12.2) WILD-TYPE  239  680
     clus
vv    DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  NO                            19                            239
  YES                           90                            680
[1] 2 2
[1] FALSE
D67V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 37(16P12.2) MUTATED            14                             3
  DEL PEAK 37(16P12.2) WILD-TYPE         180                            27
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 37(16P12.2) MUTATED                  3                 5
  DEL PEAK 37(16P12.2) WILD-TYPE              126               184
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 37(16P12.2) MUTATED                     1
  DEL PEAK 37(16P12.2) WILD-TYPE                  17
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 37(16P12.2) MUTATED                                88
  DEL PEAK 37(16P12.2) WILD-TYPE                             437
D67V7, multiclass
                                 clus
vv                                DEL PEAK 37(16P12.2) MUTATED
  ASTROCYTOMA                                               14
  GLIOBLASTOMA MULTIFORME (GBM)                              3
  OLIGOASTROCYTOMA                                           3
  OLIGODENDROGLIOMA                                          5
  TREATED PRIMARY GBM                                        1
  UNTREATED PRIMARY (DE NOVO) GBM                           88
                                 clus
vv                                DEL PEAK 37(16P12.2) WILD-TYPE
  ASTROCYTOMA                                                180
  GLIOBLASTOMA MULTIFORME (GBM)                               27
  OLIGOASTROCYTOMA                                           126
  OLIGODENDROGLIOMA                                          184
  TREATED PRIMARY GBM                                         17
  UNTREATED PRIMARY (DE NOVO) GBM                            437
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 37(16P12.2) MUTATED                                  0     2
  DEL PEAK 37(16P12.2) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 37(16P12.2) MUTATED                          10    98
  DEL PEAK 37(16P12.2) WILD-TYPE                        61   861
D67V8, multiclass
                                  clus
vv                                 DEL PEAK 37(16P12.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  10
  WHITE                                                      98
                                  clus
vv                                 DEL PEAK 37(16P12.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    61
  WHITE                                                       861
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V9, binary
                                cls
clus                               0   1
  DEL PEAK 37(16P12.2) MUTATED     4  98
  DEL PEAK 37(16P12.2) WILD-TYPE  40 823
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(16P12.2) MUTATED      4   98
  DEL PEAK 37(16P12.2) WILD-TYPE   40  823
                        clus
vv                       DEL PEAK 37(16P12.2) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                           98
                        clus
vv                       DEL PEAK 37(16P12.2) WILD-TYPE
  HISPANIC OR LATINO                                 40
  NOT HISPANIC OR LATINO                            823
[1] 2 2
[1] FALSE

Clustering(68) Variable = DEL PEAK 38(16Q23.1) MUTATION ANALYSIS
D68V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 38(16Q23.1) MUTATED    26 102
  DEL PEAK 38(16Q23.1) WILD-TYPE 454 496
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           128                            950 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           102                            496 
$`DEL PEAK 38(16Q23.1) MUTATED`
TCGA-06-5418 TCGA-06-5859 TCGA-06-6698 TCGA-06-6700 TCGA-06-A6S0 TCGA-06-A6S1 
        2.73         4.57         4.77         4.77         3.12         2.56 
TCGA-12-1600 TCGA-12-3649 TCGA-12-3653 TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 
       14.73        15.22        14.53        14.93         2.04        15.12 
TCGA-14-0812 TCGA-14-0862 TCGA-14-1453 TCGA-14-1823 TCGA-14-2554 TCGA-16-1045 
        3.25         2.89         1.15        17.85        17.49        29.03 
TCGA-19-1392 TCGA-19-5947 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-27-1832 
        3.65         6.64         4.73         1.78        22.49         9.86 
TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1755 TCGA-32-1973 TCGA-32-1978 
       16.77         7.59         8.35         1.55        21.07        15.85 
TCGA-32-1980 TCGA-32-1987 TCGA-32-2494 TCGA-32-4210 TCGA-41-3915 TCGA-41-5651 
        1.18        14.86        20.78         3.72        11.84        15.12 
TCGA-74-6578 TCGA-76-4928 TCGA-OX-A56R TCGA-DB-5277 TCGA-DB-5281 TCGA-DB-A75O 
       14.33         3.09         5.92        50.86        78.28        30.74 
TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5855 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7018 
       30.21        18.02         6.81         6.54       117.40        30.67 
TCGA-DU-8165 TCGA-DU-8167 TCGA-E1-5307 TCGA-E1-A7YQ TCGA-FG-A4MW TCGA-HT-7469 
       19.13        15.48        57.93        51.88        18.38        11.54 
TCGA-HT-8011 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5RB TCGA-P5-A5F4 TCGA-P5-A735 
       16.24        15.72         0.23         0.10         7.59         9.60 
TCGA-P5-A780 TCGA-S9-A6U9 TCGA-S9-A6WH TCGA-S9-A7IX TCGA-S9-A89V TCGA-S9-A89Z 
        2.37        95.93        38.56        26.93        18.71        20.48 
TCGA-TQ-A7RM TCGA-02-0009 TCGA-02-0026 TCGA-02-0038 TCGA-02-0039 TCGA-02-0052 
       36.69        10.59        24.59        10.72        10.52        12.59 
TCGA-02-0055 TCGA-02-0074 TCGA-02-0114 TCGA-02-0258 TCGA-02-0281 TCGA-02-0321 
        2.50        10.19        99.98        16.54         3.98         9.90 
TCGA-02-0337 TCGA-02-0456 TCGA-02-2470 TCGA-02-2486 TCGA-06-0132 TCGA-06-0164 
       25.12         3.35        12.92        20.32        25.35        56.91 
TCGA-06-0168 TCGA-06-0171 TCGA-06-0174 TCGA-06-0177 TCGA-06-0214 TCGA-06-0216 
       19.66        13.12         3.22         4.18        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0414 TCGA-06-0645 TCGA-06-0686 TCGA-06-0743 
        0.72        19.82        35.11         5.75        14.20        26.40 
TCGA-06-0744 TCGA-06-0749 TCGA-06-0879 TCGA-06-0882 TCGA-06-1087 TCGA-06-2557 
       46.88         2.70        40.41        20.78         4.04         1.08 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-6389 TCGA-06-6693 TCGA-08-0353 
        5.98         4.37         0.43         7.79       120.56         8.42 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0520 TCGA-08-0525 TCGA-12-0618 
        0.72        12.56        42.15        10.75        15.98        12.99 
TCGA-12-0619 TCGA-12-0654 TCGA-12-0692 TCGA-12-0826 TCGA-12-1088 TCGA-12-1091 
       34.92         7.59         3.65        27.78       127.59        33.21 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0813 TCGA-14-0871 TCGA-19-1389 TCGA-28-5204 
        4.14         2.24         1.35        28.93         4.64        14.93 
TCGA-28-5216 TCGA-76-6660 
       13.64         3.75 

$`DEL PEAK 38(16Q23.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M 
       20.45        18.64        21.40        45.60        42.77        59.38 
TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       15.32        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 
        8.98         8.55         6.71         3.75         6.15         5.23 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6701 TCGA-06-A5U0 TCGA-06-A5U1 
        8.32        12.85         1.55         4.96        26.79         1.87 
TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 
       14.60        17.72        15.35        21.73        15.65        25.68 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3650 TCGA-12-3651 
        6.77        59.77        44.02        26.93        10.95        12.69 
TCGA-12-3652 TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
       34.92         3.22        11.97         0.95         6.21        23.05 
TCGA-14-0790 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 
       13.78        16.50        26.33        15.95         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.05        58.78        23.11         7.10        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.96         6.67        12.43         0.99         1.97 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-3477 
       17.79         7.63         5.88         7.17         7.96         3.78 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        3.42        17.59         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
       21.24        13.97         6.41         8.61        14.27         3.39 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 
        7.00         7.04        17.19         8.02        18.90        12.10 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 TCGA-26-1438 
       14.07        16.80        14.96        17.79        28.54        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       13.87         9.73         7.13         9.37         9.40         8.88 
TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 
       18.97        19.33         5.06        16.60        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       16.08         2.86        14.40        15.78         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1756 TCGA-28-1757 
        9.21         7.63         8.48         1.22         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 
        0.66         6.74         4.77        15.39         0.49         0.10 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 
       19.50         4.67        12.69        16.93        12.23        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.95         8.84        22.78        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9R 
        9.53         0.99         4.44         0.20        12.46         4.08 
TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 
        1.45        25.58         3.45        20.91         4.34         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        7.50         4.80         4.54         3.65         9.17         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       36.85        16.70         3.29         2.70        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       36.20         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA 
       72.92        91.13        44.52        36.56        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       30.21        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       17.88        16.18        19.96        63.88        46.06        24.59 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       13.71        18.61        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        8.45       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 
       62.96       156.23       154.36        14.99       105.21         8.84 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       90.77        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       44.02        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       22.29        11.41        26.76        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 
        0.56        50.14        67.46        41.13        79.99       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO 
        3.65        19.46        12.43        16.18        21.30        75.02 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX 
       14.96        22.52        32.61        38.27        10.72        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       23.70        14.76        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 
       28.54        10.78        36.66        48.69         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        0.10         6.67        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       31.43         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 
        5.56        13.78         0.23        29.59        34.19        28.27 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC 
       26.04         0.13        20.22         0.07        27.35         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       28.87        20.71        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         9.44         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.96         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
       10.95         9.01        13.61         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        3.45         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6UA TCGA-S9-A6UB 
       29.85        32.61        35.15        98.24         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
       75.25       135.22        85.55        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-TM-A7C3 TCGA-TM-A7C4 
       99.06        30.05        98.63        31.59        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN 
       19.69        15.98         2.04        40.41        44.09        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        45.93        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 
       43.40        45.80        46.88        37.71        20.81         7.63 
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
       11.77         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        12.16        90.58         2.83        14.14         3.62 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 
       18.31         6.87        14.73         3.22        15.09         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       28.70        25.05         5.49        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       92.65        15.65        48.95        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 
       14.47        13.87        14.20        15.95        12.23         7.73 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 
       10.62         7.33        15.91        25.71         4.37        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.21        16.80        15.32        15.45         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       12.95        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
       10.29         2.20        11.74         2.33        20.09        17.79 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.09         8.61        19.46        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       10.45         3.19        10.82         9.44        11.80         3.42 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 
       10.65         5.85         3.29         4.47         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        5.56         0.39         7.66         8.42         7.40        11.84 
TCGA-06-0213 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
        0.53        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        9.01         0.26        72.36         4.70         9.57         3.16 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0745 
       12.62         5.75         9.80         2.10        23.57         7.86 
TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0881 
        2.70         0.92        43.46        46.19         7.17        16.57 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       26.76        23.93         6.84        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        33.90        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2570 TCGA-06-6390 TCGA-06-6694 
       30.64         5.95        16.64        31.50         5.39         7.36 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        37.84         4.18       115.86         1.74         8.42 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       25.71        12.16         9.80        29.23        65.33         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       17.95        24.56        31.10        37.58        22.29         3.39 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0510 
       12.23        14.93        18.02        15.35        13.97         4.27 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 
       11.08        19.59        58.68        19.33         4.80         7.27 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 
       18.41         7.56        14.73        10.45        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 
       38.17        25.97        26.66        12.13        20.38        28.41 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       15.06        53.85        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1093 
       38.76         8.94        20.58         5.82         7.59        15.98 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-14-0789 
       12.23        15.85         9.11        14.53         3.98        11.24 
TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 
        5.39         2.04        19.30         0.79        13.78        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       19.10        53.19        13.28         3.91        26.07        16.37 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       11.77        21.90         0.66        10.75         9.07         5.95 
TCGA-19-1388 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 
       12.95        31.33        14.86         5.49         1.58         7.92 
TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        2.33         7.30         5.26        11.28        17.88        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77        31.27        23.44        11.01         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-81-5910 
       12.76         5.42         7.36        11.38         5.42         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                        127.59                         211.17 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                        13.055                         16.585 
[1] "0.1 - 127.6 (13.1)" "0.0 - 211.2 (16.6)"
[1] "hr=" "2"  
D68V2, continuous
D68V3, binary
                                cls
clus                               0   1
  DEL PEAK 38(16Q23.1) MUTATED   100  28
  DEL PEAK 38(16Q23.1) WILD-TYPE 473 484
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16Q23.1) MUTATED    100   28
  DEL PEAK 38(16Q23.1) WILD-TYPE  473  484
                        clus
vv                       DEL PEAK 38(16Q23.1) MUTATED
  BRAIN                                           100
  CENTRAL NERVOUS SYSTEM                           28
                        clus
vv                       DEL PEAK 38(16Q23.1) WILD-TYPE
  BRAIN                                             473
  CENTRAL NERVOUS SYSTEM                            484
[1] 2 2
[1] FALSE
D68V4, binary
                                cls
clus                               0   1
  DEL PEAK 38(16Q23.1) MUTATED    54  74
  DEL PEAK 38(16Q23.1) WILD-TYPE 399 558
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16Q23.1) MUTATED     54   74
  DEL PEAK 38(16Q23.1) WILD-TYPE  399  558
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  FEMALE                           54                            399
  MALE                             74                            558
[1] 2 2
[1] FALSE
D68V5, binary
                                cls
clus                               0   1
  DEL PEAK 38(16Q23.1) MUTATED    22  96
  DEL PEAK 38(16Q23.1) WILD-TYPE 236 674
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16Q23.1) MUTATED     22   96
  DEL PEAK 38(16Q23.1) WILD-TYPE  236  674
     clus
vv    DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  NO                            22                            236
  YES                           96                            674
[1] 2 2
[1] FALSE
D68V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 38(16Q23.1) MUTATED            15                             4
  DEL PEAK 38(16Q23.1) WILD-TYPE         179                            26
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 38(16Q23.1) MUTATED                  6                 7
  DEL PEAK 38(16Q23.1) WILD-TYPE              123               182
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 38(16Q23.1) MUTATED                     2
  DEL PEAK 38(16Q23.1) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 38(16Q23.1) MUTATED                                94
  DEL PEAK 38(16Q23.1) WILD-TYPE                             431
D68V7, multiclass
                                 clus
vv                                DEL PEAK 38(16Q23.1) MUTATED
  ASTROCYTOMA                                               15
  GLIOBLASTOMA MULTIFORME (GBM)                              4
  OLIGOASTROCYTOMA                                           6
  OLIGODENDROGLIOMA                                          7
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           94
                                 clus
vv                                DEL PEAK 38(16Q23.1) WILD-TYPE
  ASTROCYTOMA                                                179
  GLIOBLASTOMA MULTIFORME (GBM)                               26
  OLIGOASTROCYTOMA                                           123
  OLIGODENDROGLIOMA                                          182
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            431
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 38(16Q23.1) MUTATED                                  0     2
  DEL PEAK 38(16Q23.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 38(16Q23.1) MUTATED                          13   111
  DEL PEAK 38(16Q23.1) WILD-TYPE                        58   848
D68V8, multiclass
                                  clus
vv                                 DEL PEAK 38(16Q23.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  13
  WHITE                                                     111
                                  clus
vv                                 DEL PEAK 38(16Q23.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    58
  WHITE                                                       848
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V9, binary
                                cls
clus                               0   1
  DEL PEAK 38(16Q23.1) MUTATED     4 112
  DEL PEAK 38(16Q23.1) WILD-TYPE  40 809
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(16Q23.1) MUTATED      4  112
  DEL PEAK 38(16Q23.1) WILD-TYPE   40  809
                        clus
vv                       DEL PEAK 38(16Q23.1) MUTATED
  HISPANIC OR LATINO                                4
  NOT HISPANIC OR LATINO                          112
                        clus
vv                       DEL PEAK 38(16Q23.1) WILD-TYPE
  HISPANIC OR LATINO                                 40
  NOT HISPANIC OR LATINO                            809
[1] 2 2
[1] FALSE

Clustering(69) Variable = DEL PEAK 39(17P13.1) MUTATION ANALYSIS
D69V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 39(17P13.1) MUTATED    30  86
  DEL PEAK 39(17P13.1) WILD-TYPE 450 512
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                           116                            962 
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                            86                            512 
$`DEL PEAK 39(17P13.1) MUTATED`
TCGA-06-5408 TCGA-06-A5U0 TCGA-12-1598 TCGA-12-3646 TCGA-12-3653 TCGA-14-0783 
       11.74        26.79        15.65        44.02        14.53         6.21 
TCGA-14-1034 TCGA-14-1396 TCGA-14-1453 TCGA-14-1794 TCGA-14-3477 TCGA-19-0960 
       15.95         1.12         1.15         0.99         3.78         8.61 
TCGA-19-1791 TCGA-19-2623 TCGA-19-2629 TCGA-19-4065 TCGA-27-1835 TCGA-28-1756 
        0.13         7.53        24.23         7.04        21.30         2.83 
TCGA-28-2509 TCGA-32-1976 TCGA-32-1987 TCGA-32-2491 TCGA-32-4210 TCGA-41-2573 
        4.77         0.49        14.86        12.23         3.72         8.94 
TCGA-41-3392 TCGA-41-3915 TCGA-41-5651 TCGA-4W-AA9R TCGA-4W-AA9S TCGA-76-4925 
        0.99        11.84        15.12         4.08         1.45         4.80 
TCGA-76-4934 TCGA-76-6285 TCGA-76-6662 TCGA-DU-5853 TCGA-DU-6400 TCGA-DU-6401 
        2.53         8.35        34.45        13.38         1.22        87.45 
TCGA-DU-7010 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TP TCGA-FG-A4MY TCGA-FG-A60J 
       14.99        23.74        19.13        33.27        23.70        14.76 
TCGA-HT-7689 TCGA-HT-8106 TCGA-HT-8564 TCGA-HT-A4DS TCGA-IK-7675 TCGA-P5-A5EZ 
       14.96         0.10        15.72         0.23        19.00         2.30 
TCGA-P5-A5F6 TCGA-TM-A84J TCGA-TQ-A7RI TCGA-02-0001 TCGA-02-0024 TCGA-02-0033 
        1.28        24.16         2.04        11.77        53.10         2.83 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0079 TCGA-02-0086 TCGA-02-0104 
        2.50         9.57        28.70        27.25         8.81        65.00 
TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 TCGA-02-0258 TCGA-02-0269 TCGA-02-0281 
       11.67        92.65        15.65        16.54        10.75         3.98 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0339 TCGA-02-0456 TCGA-06-0130 TCGA-06-0147 
        9.90        10.62        12.39         3.35        12.95        17.79 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 TCGA-06-0177 TCGA-06-0184 TCGA-06-0187 
        8.61        12.33         9.44         4.18        69.90        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0197 TCGA-06-0206 
       44.58        15.42        10.42        38.96         5.56         7.66 
TCGA-06-0213 TCGA-06-0241 TCGA-06-0397 TCGA-06-0410 TCGA-06-0644 TCGA-06-0646 
        0.53        48.69         9.01         4.70        12.62         5.75 
TCGA-06-0744 TCGA-06-0875 TCGA-06-1086 TCGA-06-1087 TCGA-06-2557 TCGA-06-2558 
       46.88        43.46         6.84         4.04         1.08        12.49 
TCGA-06-2561 TCGA-06-2569 TCGA-06-6694 TCGA-08-0245 TCGA-08-0353 TCGA-08-0386 
       17.65         0.43         7.36        37.84         8.42        18.02 
TCGA-08-0390 TCGA-12-0619 TCGA-12-0772 TCGA-12-0826 TCGA-12-1098 TCGA-14-0871 
       13.97        34.92        53.85        27.78         3.98        28.93 
TCGA-15-1449 TCGA-16-0846 TCGA-26-1442 TCGA-26-5133 TCGA-28-5215 TCGA-32-2616 
       13.28         3.91        31.33        14.86        11.01         7.36 
TCGA-76-6283 TCGA-76-6660 
        5.42         3.75 

$`DEL PEAK 39(17P13.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M 
       20.45        18.64        21.40        45.60        42.77        59.38 
TCGA-06-1806 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       15.32         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.23         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
        4.96         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
       15.35        21.73        25.68        14.73         6.77        59.77 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       26.93        15.22        10.95        12.69        34.92        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
        3.22         2.04        15.12        11.97         0.95        23.05 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1395 
       13.78         3.25         2.89        16.50        26.33         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.05        58.78        23.11         7.10        30.18 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.96         6.67        12.43         1.97        17.79 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.85         7.63         5.88         7.17        17.49         7.96 
TCGA-14-4157 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        3.42        17.59        29.03         4.57        10.29        14.01 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0963 TCGA-19-0964 
        9.14        21.24        13.97         6.41        14.27         3.39 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 
       25.38         3.65         7.17        12.66         3.25         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 
        4.87         1.08         0.16         4.08         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 
       22.49        14.07        16.80        14.96        17.79        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       24.23        40.54        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        16.77        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.78         0.20         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        8.48         1.22         1.55         0.13         0.66         6.74 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.39        21.07         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        4.67        12.69        16.93        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 
        8.84        22.78        25.18        21.14        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 
       10.85        19.23         0.85        13.35         9.53         4.44 
TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        12.46        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         7.50         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 
        9.17        36.85        16.70         3.29         2.70        17.06 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 
       20.98         4.83         5.03        23.90        18.64        36.20 
TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        5.92         6.28        20.55       117.50         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       36.36        60.10        40.18         0.26        21.01        53.62 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.94        49.12       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       46.42        18.84        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F 
       63.88        46.06        24.59        30.21        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 
       18.02        14.56        17.46         6.74         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6402 
       22.42        49.02        75.16        46.06        65.75         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       14.60        20.68        21.40        16.96        15.48        14.17 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       26.76        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 
       37.38         7.50        44.42        38.89         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ 
       19.46        12.43        16.18        21.30        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       18.71        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        31.69         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
       13.78         0.23        29.59        34.19        28.27        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        2.70        16.93         1.81        16.14        16.83        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
       56.58        45.44        41.49        68.32        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54        24.92        31.63        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       28.87        20.71        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        7.99         2.37         9.44         5.88         7.96         7.59 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       30.44        28.08        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       45.93        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0003 TCGA-02-0006 
       46.88        37.71        20.81         7.63         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       23.18        10.59        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       87.06        77.65        20.12        42.74        24.59        12.16 
TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       90.58        14.14         3.62        10.72        10.52        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
        6.87        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
       19.86         8.35         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0107 
       51.32        57.76        16.96         3.48        27.02        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 
       23.18        99.98        48.95        16.93        17.72        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 TCGA-02-0326 
       13.87        14.20        15.95        12.23         7.73         7.33 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 
       15.91        25.71         4.37        25.12        10.59        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 
       10.55        47.11        11.34         9.27        16.21        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 
       10.29         2.20        11.74         2.33        20.09        10.09 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        13.94        10.45         3.19        10.82 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0194 TCGA-06-0195 
       88.14        20.25         3.65        73.84         4.67         7.40 
TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 
        0.39         8.42         7.40        11.84        15.02        24.16 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 
        0.72        19.82        13.64        13.32        20.42        10.82 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 
        0.26        72.36         9.57         3.16        35.11         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 
        9.80         2.10        23.57        14.20        26.40         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         2.70         0.92        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 
       16.57        20.78        26.76        23.93        26.79        11.84 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       15.32        13.61        33.90         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6389 
        5.95        16.64         5.98         4.37        31.50         7.79 
TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        5.39       120.56        22.68         4.18       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        8.42        25.71        12.16         9.80        29.23        65.33 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        17.95        24.56        31.10        37.58        22.29 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 
        3.39        12.23        14.93        15.35         0.72        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        4.27        42.15        11.08        19.59        58.68        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.73        12.99        10.45         7.59        94.78         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        26.66        12.13         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.41        15.06        43.23         7.63         9.73        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       33.21        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        4.14         2.24        11.24         1.35         5.39         2.04 
TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
       19.30         0.79        13.78        50.53        19.10        53.19 
TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 
       26.07        16.37        11.77        21.90         0.66        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-5134 TCGA-26-5139 
        9.07         5.95        12.95         4.64         5.49         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        7.92         2.33         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       17.88        14.53        11.77        31.27        23.44        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-76-6280 TCGA-81-5910 
        5.16        22.68        12.76         5.42        11.38         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                         92.65                         211.17 
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                        11.705                         16.785 
[1] "0.1 - 92.7 (11.7)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2.1"
D69V2, continuous
D69V3, binary
                                cls
clus                               0   1
  DEL PEAK 39(17P13.1) MUTATED    98  18
  DEL PEAK 39(17P13.1) WILD-TYPE 475 494
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(17P13.1) MUTATED     98   18
  DEL PEAK 39(17P13.1) WILD-TYPE  475  494
                        clus
vv                       DEL PEAK 39(17P13.1) MUTATED
  BRAIN                                            98
  CENTRAL NERVOUS SYSTEM                           18
                        clus
vv                       DEL PEAK 39(17P13.1) WILD-TYPE
  BRAIN                                             475
  CENTRAL NERVOUS SYSTEM                            494
[1] 2 2
[1] FALSE
D69V4, binary
                                cls
clus                               0   1
  DEL PEAK 39(17P13.1) MUTATED    56  60
  DEL PEAK 39(17P13.1) WILD-TYPE 397 572
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(17P13.1) MUTATED     56   60
  DEL PEAK 39(17P13.1) WILD-TYPE  397  572
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  FEMALE                           56                            397
  MALE                             60                            572
[1] 2 2
[1] FALSE
D69V5, binary
                                cls
clus                               0   1
  DEL PEAK 39(17P13.1) MUTATED    18  90
  DEL PEAK 39(17P13.1) WILD-TYPE 240 680
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(17P13.1) MUTATED     18   90
  DEL PEAK 39(17P13.1) WILD-TYPE  240  680
     clus
vv    DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  NO                            18                            240
  YES                           90                            680
[1] 2 2
[1] FALSE
D69V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 39(17P13.1) MUTATED             6                             6
  DEL PEAK 39(17P13.1) WILD-TYPE         188                            24
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 39(17P13.1) MUTATED                  4                 8
  DEL PEAK 39(17P13.1) WILD-TYPE              125               181
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 39(17P13.1) MUTATED                     3
  DEL PEAK 39(17P13.1) WILD-TYPE                  15
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 39(17P13.1) MUTATED                                89
  DEL PEAK 39(17P13.1) WILD-TYPE                             436
D69V7, multiclass
                                 clus
vv                                DEL PEAK 39(17P13.1) MUTATED
  ASTROCYTOMA                                                6
  GLIOBLASTOMA MULTIFORME (GBM)                              6
  OLIGOASTROCYTOMA                                           4
  OLIGODENDROGLIOMA                                          8
  TREATED PRIMARY GBM                                        3
  UNTREATED PRIMARY (DE NOVO) GBM                           89
                                 clus
vv                                DEL PEAK 39(17P13.1) WILD-TYPE
  ASTROCYTOMA                                                188
  GLIOBLASTOMA MULTIFORME (GBM)                               24
  OLIGOASTROCYTOMA                                           125
  OLIGODENDROGLIOMA                                          181
  TREATED PRIMARY GBM                                         15
  UNTREATED PRIMARY (DE NOVO) GBM                            436
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 39(17P13.1) MUTATED                                  0     2
  DEL PEAK 39(17P13.1) WILD-TYPE                                1    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 39(17P13.1) MUTATED                          10   102
  DEL PEAK 39(17P13.1) WILD-TYPE                        61   857
D69V8, multiclass
                                  clus
vv                                 DEL PEAK 39(17P13.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                  10
  WHITE                                                     102
                                  clus
vv                                 DEL PEAK 39(17P13.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              1
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    61
  WHITE                                                       857
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V9, binary
                                cls
clus                               0   1
  DEL PEAK 39(17P13.1) MUTATED     6  99
  DEL PEAK 39(17P13.1) WILD-TYPE  38 822
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(17P13.1) MUTATED      6   99
  DEL PEAK 39(17P13.1) WILD-TYPE   38  822
                        clus
vv                       DEL PEAK 39(17P13.1) MUTATED
  HISPANIC OR LATINO                                6
  NOT HISPANIC OR LATINO                           99
                        clus
vv                       DEL PEAK 39(17P13.1) WILD-TYPE
  HISPANIC OR LATINO                                 38
  NOT HISPANIC OR LATINO                            822
[1] 2 2
[1] FALSE

Clustering(70) Variable = DEL PEAK 40(17Q11.2) MUTATION ANALYSIS
D70V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 40(17Q11.2) MUTATED    25  68
  DEL PEAK 40(17Q11.2) WILD-TYPE 455 530
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            93                            985 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            68                            530 
$`DEL PEAK 40(17Q11.2) MUTATED`
TCGA-06-5408 TCGA-06-6697 TCGA-12-3653 TCGA-14-0862 TCGA-14-1034 TCGA-14-1396 
       11.74        12.85        14.53         2.89        15.95         1.12 
TCGA-14-1453 TCGA-19-2623 TCGA-19-4065 TCGA-19-5947 TCGA-19-5953 TCGA-19-A60I 
        1.15         7.53         7.04         6.64         4.73        17.79 
TCGA-27-2527 TCGA-28-2502 TCGA-28-2509 TCGA-32-1986 TCGA-32-2491 TCGA-41-3392 
       14.40         0.66         4.77        12.69        12.23         0.99 
TCGA-41-4097 TCGA-41-5651 TCGA-4W-AA9S TCGA-74-6573 TCGA-76-4934 TCGA-76-6285 
        0.20        15.12         1.45         3.45         2.53         8.35 
TCGA-CS-5397 TCGA-DU-6400 TCGA-DU-7010 TCGA-DU-7298 TCGA-DU-8161 TCGA-DU-8165 
        6.38         1.22        14.99        18.94        23.74        19.13 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-HT-7477 TCGA-HT-7689 TCGA-HT-8106 TCGA-HT-8564 
       23.70        14.76        24.26        14.96         0.10        15.72 
TCGA-HT-A4DS TCGA-HT-A617 TCGA-IK-7675 TCGA-P5-A5EV TCGA-P5-A5EZ TCGA-P5-A5F6 
        0.23        16.14        19.00         0.23         2.30         1.28 
TCGA-QH-A6CS TCGA-TQ-A7RJ TCGA-VM-A8CD TCGA-02-0001 TCGA-02-0033 TCGA-02-0039 
       19.33        40.41         7.89        11.77         2.83        10.52 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0079 TCGA-02-0086 TCGA-02-0106 TCGA-02-0113 
        2.50         9.57        27.25         8.81        11.67        92.65 
TCGA-02-0115 TCGA-02-0258 TCGA-02-0269 TCGA-02-0456 TCGA-06-0130 TCGA-06-0147 
       15.65        16.54        10.75         3.35        12.95        17.79 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 TCGA-06-0164 TCGA-06-0166 TCGA-06-0175 
        8.61        12.33         9.44        56.91         5.85         4.04 
TCGA-06-0177 TCGA-06-0184 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
        4.18        69.90        27.22        15.42        10.42        38.96 
TCGA-06-0197 TCGA-06-0206 TCGA-06-0644 TCGA-06-0744 TCGA-06-0882 TCGA-06-2569 
        5.56         7.66        12.62        46.88        20.78         0.43 
TCGA-08-0353 TCGA-08-0386 TCGA-08-0390 TCGA-08-0512 TCGA-12-0619 TCGA-12-0703 
        8.42        18.02        13.97        42.15        34.92        20.38 
TCGA-12-0772 TCGA-12-0775 TCGA-12-0826 TCGA-12-1098 TCGA-14-0871 TCGA-15-1447 
       53.85         7.63        27.78         3.98        28.93        53.19 
TCGA-26-5133 TCGA-76-6283 TCGA-76-6660 
       14.86         5.42         3.75 

$`DEL PEAK 40(17Q11.2) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 
        1.48         3.98        51.55        46.88        46.72        31.82 
TCGA-DH-A66B TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K 
       42.05        62.01        17.16        23.90        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M 
       20.45        18.64        21.40        45.60        42.77        59.38 
TCGA-06-1806 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       15.32         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        5.23         8.32         4.77         1.55         4.77         4.96 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
       26.79         1.87         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       15.35        21.73        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.92        14.93         3.22         2.04        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0865 
        0.95         6.21        23.05        13.78         3.25        16.50 
TCGA-14-0866 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       26.33         1.38         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.18         0.92        40.96         6.67        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.97        17.79        17.85         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-16-0848 
        7.17        17.49         7.96         3.78         3.42        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1390 
       13.97         6.41         8.61        14.27         3.39        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.65         7.17        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         0.16         4.08        24.23         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
       17.19         8.02        18.90        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 
       14.07        16.80        14.96        28.54        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.13         9.37         9.40         8.88        18.97 
TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
       19.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 
       16.77        16.08         7.59         2.86        15.78         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.21         8.35         7.63         8.48         1.22 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-32-1970 TCGA-32-1973 
        1.55         2.83         0.13         6.74        15.39        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       14.86        16.93        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9T TCGA-74-6575 
        4.44        11.84        12.46         4.08        25.58        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.34        14.33         8.22         7.50         4.80         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.17        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        2.70        17.06        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
       34.45        18.64        36.20         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 
      117.50         7.69        43.89        36.36        60.10        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
        0.26        21.01        53.62        17.69        26.76        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       46.95        48.30        49.94        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD 
       36.56        78.28        46.42        18.84        30.21        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        19.96        63.88        46.06        24.59        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       46.06        65.75        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23       154.36       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
        7.96        94.32        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76         5.10        14.60        20.68        21.40 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       95.11        20.98        22.29        11.41        26.76        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
       44.42        38.89         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       16.18        21.30        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60L 
       32.61        38.27        10.72        18.38        18.71        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       48.69         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 
       44.68         6.05        42.74         0.10        31.69         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       34.19        28.27        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       16.83        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 
       11.05         0.10        56.58        45.44        41.49        68.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       69.27        35.44        39.75        40.01        42.54        24.92 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-KT-A74X TCGA-KT-A7W1 
       31.63        12.76        28.87        20.71        14.40        14.40 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        6.71         7.99         2.37         9.44         5.88         7.96 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        7.59         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       15.85        14.04        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       13.41         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50        16.70        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
       15.98         2.04        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE 
       31.36        45.93        43.20        13.51         0.10        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0003 TCGA-02-0006 
       46.88        37.71        20.81         7.63         4.73        18.35 
TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       23.18        10.59        35.41        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       87.06        77.65        20.12        53.10        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       12.16        90.58        14.14         3.62        10.72        18.31 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
        6.87        14.73         3.22        15.09        12.59         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        20.84        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       12.62        51.32        57.76        16.96         3.48        27.02 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 
       65.00        17.65        23.18        99.98        48.95        16.93 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.90         7.73        10.62         7.33        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 
       10.55        47.11        11.34         9.27        16.21        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.32        15.45        20.32         2.70         6.15 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       20.38        47.61         6.94         3.98        22.72        33.67 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       25.35        14.30        26.70        24.23        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 
       10.29         2.20        11.74         2.33        20.09        10.09 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        13.94        10.45         3.19        10.82 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       11.80         3.42        10.65        19.66         3.29        13.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        4.47         3.22        91.00        88.14        20.25         3.65 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0208 
       73.84        44.58         4.67         7.40         0.39         8.42 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        7.40        11.84         0.53        15.02        24.16         0.72 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       19.82        13.64        13.32        20.42        48.69        10.82 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        9.01         0.26        72.36         4.70         9.57         3.16 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       35.11         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        26.40         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0939 
       43.46        46.19         7.17        40.41        16.57        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       23.93         6.84         4.04        26.79        11.84        15.32 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        33.90         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
       12.56        30.64         5.95        16.64         5.98         4.37 
TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 
       31.50         7.79         5.39       120.56         7.36        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       37.84         4.18       115.86         1.74         8.42        25.71 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       12.16         9.80        29.23        65.33         1.28        17.95 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       14.93        15.35         0.72        12.56         4.27        11.08 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       19.59        58.68        19.33        10.75         4.80         7.27 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
       15.98        18.41         7.56        14.73        12.99        10.45 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.59        94.78         0.10        38.17        25.97        26.66 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0776 
       12.13         3.65        28.41        15.06        43.23         9.73 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.93        14.86        91.76        24.79        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        38.76         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        7.59        33.21        15.98        12.23        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 
       14.53         4.14         2.24        11.24         1.35         5.39 
TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        2.04        19.30         0.79        13.78        50.53        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 
       13.28         3.91        26.07        16.37        11.77        21.90 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        0.66        10.75         9.07         5.95        12.95         4.64 
TCGA-26-1442 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 
       31.33         5.49         1.58         7.92         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-81-5910 TCGA-81-5911 
       12.76         5.42         7.36        11.38         1.61        17.72 
TCGA-87-5896 
       26.30 

  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                         92.65                         211.17 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                         11.77                          16.64 
[1] "0.1 - 92.7 (11.8)"  "0.0 - 211.2 (16.6)"
[1] "hr=" "2.1"
D70V2, continuous
D70V3, binary
                                cls
clus                               0   1
  DEL PEAK 40(17Q11.2) MUTATED    72  21
  DEL PEAK 40(17Q11.2) WILD-TYPE 501 491
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17Q11.2) MUTATED     72   21
  DEL PEAK 40(17Q11.2) WILD-TYPE  501  491
                        clus
vv                       DEL PEAK 40(17Q11.2) MUTATED
  BRAIN                                            72
  CENTRAL NERVOUS SYSTEM                           21
                        clus
vv                       DEL PEAK 40(17Q11.2) WILD-TYPE
  BRAIN                                             501
  CENTRAL NERVOUS SYSTEM                            491
[1] 2 2
[1] FALSE
D70V4, binary
                                cls
clus                               0   1
  DEL PEAK 40(17Q11.2) MUTATED    38  55
  DEL PEAK 40(17Q11.2) WILD-TYPE 415 577
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17Q11.2) MUTATED     38   55
  DEL PEAK 40(17Q11.2) WILD-TYPE  415  577
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  FEMALE                           38                            415
  MALE                             55                            577
[1] 2 2
[1] FALSE
D70V5, binary
                                cls
clus                               0   1
  DEL PEAK 40(17Q11.2) MUTATED    15  69
  DEL PEAK 40(17Q11.2) WILD-TYPE 243 701
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17Q11.2) MUTATED     15   69
  DEL PEAK 40(17Q11.2) WILD-TYPE  243  701
     clus
vv    DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  NO                            15                            243
  YES                           69                            701
[1] 2 2
[1] FALSE
D70V6, continuous
                                vv
clus                             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 40(17Q11.2) MUTATED            11                             5
  DEL PEAK 40(17Q11.2) WILD-TYPE         183                            25
                                vv
clus                             OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 40(17Q11.2) MUTATED                  4                 6
  DEL PEAK 40(17Q11.2) WILD-TYPE              125               183
                                vv
clus                             TREATED PRIMARY GBM
  DEL PEAK 40(17Q11.2) MUTATED                     2
  DEL PEAK 40(17Q11.2) WILD-TYPE                  16
                                vv
clus                             UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 40(17Q11.2) MUTATED                                65
  DEL PEAK 40(17Q11.2) WILD-TYPE                             460
D70V7, multiclass
                                 clus
vv                                DEL PEAK 40(17Q11.2) MUTATED
  ASTROCYTOMA                                               11
  GLIOBLASTOMA MULTIFORME (GBM)                              5
  OLIGOASTROCYTOMA                                           4
  OLIGODENDROGLIOMA                                          6
  TREATED PRIMARY GBM                                        2
  UNTREATED PRIMARY (DE NOVO) GBM                           65
                                 clus
vv                                DEL PEAK 40(17Q11.2) WILD-TYPE
  ASTROCYTOMA                                                183
  GLIOBLASTOMA MULTIFORME (GBM)                               25
  OLIGOASTROCYTOMA                                           125
  OLIGODENDROGLIOMA                                          183
  TREATED PRIMARY GBM                                         16
  UNTREATED PRIMARY (DE NOVO) GBM                            460
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 40(17Q11.2) MUTATED                                  1     2
  DEL PEAK 40(17Q11.2) WILD-TYPE                                0    19
                                vv
clus                             BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 40(17Q11.2) MUTATED                           8    80
  DEL PEAK 40(17Q11.2) WILD-TYPE                        63   879
D70V8, multiclass
                                  clus
vv                                 DEL PEAK 40(17Q11.2) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                            1
  ASIAN                                                       2
  BLACK OR AFRICAN AMERICAN                                   8
  WHITE                                                      80
                                  clus
vv                                 DEL PEAK 40(17Q11.2) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                              0
  ASIAN                                                        19
  BLACK OR AFRICAN AMERICAN                                    63
  WHITE                                                       879
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V9, binary
                                cls
clus                               0   1
  DEL PEAK 40(17Q11.2) MUTATED     5  76
  DEL PEAK 40(17Q11.2) WILD-TYPE  39 845
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17Q11.2) MUTATED      5   76
  DEL PEAK 40(17Q11.2) WILD-TYPE   39  845
                        clus
vv                       DEL PEAK 40(17Q11.2) MUTATED
  HISPANIC OR LATINO                                5
  NOT HISPANIC OR LATINO                           76
                        clus
vv                       DEL PEAK 40(17Q11.2) WILD-TYPE
  HISPANIC OR LATINO                                 39
  NOT HISPANIC OR LATINO                            845
[1] 2 2
[1] FALSE

Clustering(71) Variable = DEL PEAK 41(18Q23) MUTATION ANALYSIS
D71V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 41(18Q23) MUTATED    75  80
  DEL PEAK 41(18Q23) WILD-TYPE 405 518
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                         155                          923 
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                          80                          518 
$`DEL PEAK 41(18Q23) MUTATED`
TCGA-CS-6665 TCGA-DH-A66B TCGA-DU-7300 TCGA-06-1806 TCGA-06-5413 TCGA-06-5859 
       51.55        42.05        62.01        15.32         8.81         4.57 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-12-5301 TCGA-14-0812 TCGA-14-0865 TCGA-14-1451 
       26.79         1.87         2.04         3.25        16.50        23.11 
TCGA-19-1390 TCGA-19-2619 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
       25.38         9.67         7.04        14.96        10.03        13.87 
TCGA-26-5136 TCGA-27-1834 TCGA-27-1838 TCGA-28-1750 TCGA-32-1973 TCGA-32-1976 
       18.97        40.54        11.51         8.35        21.07         0.49 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2634 TCGA-32-4210 TCGA-41-3392 TCGA-4W-AA9S 
       14.86        12.23        22.78         3.72         0.99         1.45 
TCGA-74-6575 TCGA-76-4934 TCGA-76-6285 TCGA-76-6286 TCGA-76-6662 TCGA-CS-5396 
       20.91         2.53         8.35        20.98        34.45        53.62 
TCGA-CS-6667 TCGA-DB-5275 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4XD TCGA-DB-A4XG 
       48.30        47.93        44.52        36.56        39.78        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A7UT 
       31.63        24.20        19.96        63.88        30.21        17.46 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-6393 
       18.61        14.56        17.46         8.45       182.33        52.11 
TCGA-DU-6407 TCGA-DU-7009 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-8158 TCGA-DU-A5TT 
       94.52       154.36         6.54       117.40         5.10        24.43 
TCGA-DU-A7T6 TCGA-E1-5307 TCGA-E1-A7YM TCGA-E1-A7YS TCGA-FG-8185 TCGA-FG-8188 
       17.98        57.93        21.30        15.32        14.24        14.96 
TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7688 TCGA-HT-7692 
        6.54        75.19        17.29         0.23        31.69         2.96 
TCGA-HT-7857 TCGA-HT-7873 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A5RB TCGA-HT-A617 
        0.23        23.61        34.19        15.72         0.10        16.14 
TCGA-HT-A74L TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-8320 TCGA-HW-A5KJ TCGA-HW-A5KM 
       11.05        41.49        68.32        40.01        31.63        20.71 
TCGA-P5-A5EX TCGA-P5-A72Z TCGA-QH-A65R TCGA-QH-A65Z TCGA-RY-A840 TCGA-S9-A6TS 
        7.99        11.64        15.16        14.04        28.08        62.17 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6WD TCGA-S9-A6WH TCGA-S9-A6WL TCGA-S9-A6WM 
       41.10        40.93        75.25        38.56        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A7QY TCGA-S9-A7R2 TCGA-TM-A84G TCGA-TM-A84I 
       26.47        18.64        28.37        10.39        40.64        28.08 
TCGA-TM-A84J TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RW TCGA-VM-A8CA 
       24.16        21.37        15.98         2.04        26.99        13.51 
TCGA-WH-A86K TCGA-WY-A85B TCGA-02-0006 TCGA-02-0011 TCGA-02-0024 TCGA-02-0025 
       13.32        45.80        18.35        20.71        53.10        42.74 
TCGA-02-0039 TCGA-02-0075 TCGA-02-0079 TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 
       10.52        20.84        27.25        11.67        23.18        92.65 
TCGA-02-0324 TCGA-06-0129 TCGA-06-0151 TCGA-06-0173 TCGA-06-0206 TCGA-06-0213 
        7.73        33.67        46.59         4.47         7.66         0.53 
TCGA-06-0237 TCGA-06-0648 TCGA-06-0649 TCGA-06-0749 TCGA-06-1086 TCGA-06-1800 
       13.64         9.80         2.10         2.70         6.84        26.79 
TCGA-06-2559 TCGA-06-6694 TCGA-08-0245 TCGA-08-0359 TCGA-08-0510 TCGA-08-0518 
        4.93         7.36        37.84         3.39         4.27        19.33 
TCGA-08-0525 TCGA-12-0691 TCGA-12-0776 TCGA-12-0826 TCGA-12-1096 TCGA-12-1098 
       15.98        12.13         9.73        27.78         9.11         3.98 
TCGA-14-0817 TCGA-16-0846 TCGA-16-0849 TCGA-19-0962 TCGA-19-1388 TCGA-26-5133 
        5.39         3.91        26.07         0.66        12.95        14.86 
TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 TCGA-28-5216 TCGA-81-5911 
        5.26        11.28        31.27        13.64        17.72 

$`DEL PEAK 41(18Q23) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DU-A76O 
        1.48         3.98        46.88        46.72        31.82        17.16 
TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 
       23.90        20.09        17.82        20.45        18.64        21.40 
TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
       45.60        42.77        59.38        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        4.54         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        6.15         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A6S0 TCGA-06-A6S1 TCGA-06-A7TK TCGA-06-A7TL 
        4.77         4.96         3.12         2.56        14.60        17.72 
TCGA-12-0615 TCGA-12-1092 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       15.35        21.73        15.65        25.68        14.73         6.77 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.77        44.02        26.93        15.22        10.95        12.69 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0736 TCGA-14-0740 
       34.92        14.53        14.93         3.22        15.12        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0862 TCGA-14-0866 
        0.95         6.21        23.05        13.78         2.89        26.33 
TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       15.95         1.38         1.12         3.75        32.05        58.78 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.17        17.49         7.96         3.78         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       17.59        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 
       21.24        13.97         6.41         8.61        14.27         3.39 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 
        3.65         7.17        12.66         3.25         0.13         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        24.23         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I TCGA-19-A6J5 
        1.78        22.49        14.07        16.80        17.79        28.54 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-A7UX 
        9.73         7.13         9.37         9.40         8.88        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
        5.06        16.60         9.86        24.23        21.30        30.05 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       14.04        24.76        18.08        16.77        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.78         0.20         2.53         9.21 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.63         8.48         1.22         1.55         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 
        0.66         6.74         4.77        15.39         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.02        15.95         8.84        25.18        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        4.08        25.58         3.45         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80         4.54         3.09         3.65         9.17 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6656 
       36.85        16.70         3.29         2.70        17.06         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-OX-A56R TCGA-RR-A6KA 
        5.03        23.90        18.64        36.20         5.92         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55       117.50         7.69        43.89        36.36        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       40.18         0.26        21.01         6.38        17.69        26.76 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5273 
       37.38        46.95        49.94        49.12       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 TCGA-DB-A4X9 
       75.25        72.92        50.86        91.13        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O TCGA-DB-A64P 
       18.84        30.21        37.45        33.57        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       46.06        24.59        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 
       23.21        13.71        18.02         6.74        13.38         6.81 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16       211.17        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 
       11.64       133.74        19.89        16.83       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 
        2.40        11.47        62.96       156.23        14.99       105.21 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       94.32        18.94        44.02        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
       41.98         2.76        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       31.69        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R 
       95.11        20.98        22.29        11.41        26.76        21.30 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       38.89         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YO 
       93.21         3.65        19.46        12.43        16.18        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       51.88         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 
       42.54        41.33        18.44        15.35        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8189 
       20.61        20.09        28.34        13.68        16.01        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       14.76        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       10.78        36.66        48.69         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7481 
        3.75        17.42        24.26         6.38        40.34        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
      122.47         4.57         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
       57.60        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74         0.10        14.96         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63         0.49        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV 
       13.78         0.23        29.59        28.27         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 
        0.13        20.22         0.07        27.35         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.93         1.81        16.83        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7493 
       10.52        15.35         0.10        56.58        45.44        69.27 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KK TCGA-HW-A5KL 
       35.44        39.75        42.54        24.92        12.76        28.87 
TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY 
       19.00        14.40        14.40         0.23         6.71         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         9.44         5.88         7.96         7.59         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
        0.23        10.42        13.25        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A6CS TCGA-QH-A6CU 
        4.41         2.53        12.62        15.85        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23        13.41         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50        16.70 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU 
        5.46         9.90         2.07        19.59        30.67        87.12 
TCGA-S9-A6TV TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       18.77        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ 
      135.22        85.55        84.99        18.61        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R1 
        2.04        20.68        15.06        18.54        27.16       169.84 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       16.18        59.05        30.44        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RJ 
       25.38        18.61        14.93        23.80        19.69        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       25.87        33.93        61.41        31.36        45.93        43.20 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21         8.05        51.06        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       43.40        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 
        4.73        23.18        10.59        35.41        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       87.06        77.65        20.12        24.59        12.16        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
        2.83        14.14         3.62        10.72        18.31         6.87 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.73         3.22        15.09        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 
       28.70        25.05         5.49        10.19        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       12.62        51.32         8.81        57.76        16.96         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       27.02        65.00        17.65        99.98        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.93        17.72        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 
       13.87        14.20        15.95        12.23         9.90        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        7.33        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.27 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.21         3.35        16.80        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       20.32         2.70         6.15        20.38        47.61         6.94 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.98        22.72        12.95        25.35        14.30        26.70 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       24.23        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.29        13.12         3.22         4.04        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       88.14        20.25         3.65        69.90        73.84        27.22 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       44.58        15.42        10.42        38.96         4.67         7.40 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 
        5.56         0.39         8.42         7.40        11.84        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        19.82        13.32        20.42        48.69 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.82         9.01         0.26        72.36         4.70         9.57 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 
        3.16        35.11        12.62         5.75         5.75        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 
       14.20        26.40        46.88         7.86         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       26.76        23.93         4.04        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08        12.49        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95        16.64         5.98         4.37         0.43        31.50 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        7.79         5.39       120.56        22.68         4.18       115.86 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         8.42        25.71        12.16         9.80        29.23 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       65.33         1.28         8.42        17.95        24.56        31.10 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       37.58        22.29        12.23        14.93        18.02        15.35 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       13.97         0.72        12.56        42.15        11.08        19.59 
TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 
       58.68        10.75         4.80         7.27        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        26.66         3.65        20.38 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.41        15.06        53.85        43.23         7.63        14.93 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.86        91.76        24.79        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.94        20.58       127.59         5.82         7.59 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1099 
       33.21        15.98        12.23        15.85        14.53         4.14 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 
        2.24        11.24         1.35         2.04        28.93        19.30 
TCGA-14-1043 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        0.79        13.78        50.53        19.10        53.19        13.28 
TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       16.37        11.77        21.90        10.75         9.07         5.95 
TCGA-19-1389 TCGA-26-1442 TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        4.64        31.33         5.49         1.58         7.92         2.33 
TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 
        7.30        14.93        17.88        14.53        11.77        23.44 
TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 
       11.01         5.16        22.68        12.76         5.42         7.36 
TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-87-5896 
       11.38         5.42         3.75         1.61        26.30 

  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                        0.10                         0.03 
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                      182.33                       211.17 
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                       17.72                        15.85 
[1] "0.1 - 182.3 (17.7)" "0.0 - 211.2 (15.8)"
[1] "hr=" "1.2"
D71V2, continuous
D71V3, binary
                              cls
clus                             0   1
  DEL PEAK 41(18Q23) MUTATED    77  78
  DEL PEAK 41(18Q23) WILD-TYPE 496 434
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 41(18Q23) MUTATED     77   78
  DEL PEAK 41(18Q23) WILD-TYPE  496  434
                        clus
vv                       DEL PEAK 41(18Q23) MUTATED
  BRAIN                                          77
  CENTRAL NERVOUS SYSTEM                         78
                        clus
vv                       DEL PEAK 41(18Q23) WILD-TYPE
  BRAIN                                           496
  CENTRAL NERVOUS SYSTEM                          434
[1] 2 2
[1] FALSE
D71V4, binary
                              cls
clus                             0   1
  DEL PEAK 41(18Q23) MUTATED    58  97
  DEL PEAK 41(18Q23) WILD-TYPE 395 535
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 41(18Q23) MUTATED     58   97
  DEL PEAK 41(18Q23) WILD-TYPE  395  535
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  FEMALE                         58                          395
  MALE                           97                          535
[1] 2 2
[1] FALSE
D71V5, binary
                              cls
clus                             0   1
  DEL PEAK 41(18Q23) MUTATED    42 105
  DEL PEAK 41(18Q23) WILD-TYPE 216 665
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 41(18Q23) MUTATED     42  105
  DEL PEAK 41(18Q23) WILD-TYPE  216  665
     clus
vv    DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  NO                          42                          216
  YES                        105                          665
[1] 2 2
[1] FALSE
D71V6, continuous
                              vv
clus                           ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 41(18Q23) MUTATED            28                             5
  DEL PEAK 41(18Q23) WILD-TYPE         166                            25
                              vv
clus                           OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 41(18Q23) MUTATED                 15                35
  DEL PEAK 41(18Q23) WILD-TYPE              114               154
                              vv
clus                           TREATED PRIMARY GBM
  DEL PEAK 41(18Q23) MUTATED                     2
  DEL PEAK 41(18Q23) WILD-TYPE                  16
                              vv
clus                           UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 41(18Q23) MUTATED                                70
  DEL PEAK 41(18Q23) WILD-TYPE                             455
D71V7, multiclass
                                 clus
vv                                DEL PEAK 41(18Q23) MUTATED
  ASTROCYTOMA                                             28
  GLIOBLASTOMA MULTIFORME (GBM)                            5
  OLIGOASTROCYTOMA                                        15
  OLIGODENDROGLIOMA                                       35
  TREATED PRIMARY GBM                                      2
  UNTREATED PRIMARY (DE NOVO) GBM                         70
                                 clus
vv                                DEL PEAK 41(18Q23) WILD-TYPE
  ASTROCYTOMA                                              166
  GLIOBLASTOMA MULTIFORME (GBM)                             25
  OLIGOASTROCYTOMA                                         114
  OLIGODENDROGLIOMA                                        154
  TREATED PRIMARY GBM                                       16
  UNTREATED PRIMARY (DE NOVO) GBM                          455
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 41(18Q23) MUTATED                                  1     3
  DEL PEAK 41(18Q23) WILD-TYPE                                0    18
                              vv
clus                           BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 41(18Q23) MUTATED                          11   134
  DEL PEAK 41(18Q23) WILD-TYPE                        60   825
D71V8, multiclass
                                  clus
vv                                 DEL PEAK 41(18Q23) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                          1
  ASIAN                                                     3
  BLACK OR AFRICAN AMERICAN                                11
  WHITE                                                   134
                                  clus
vv                                 DEL PEAK 41(18Q23) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                            0
  ASIAN                                                      18
  BLACK OR AFRICAN AMERICAN                                  60
  WHITE                                                     825
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V9, binary
                              cls
clus                             0   1
  DEL PEAK 41(18Q23) MUTATED     9 127
  DEL PEAK 41(18Q23) WILD-TYPE  35 794
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 41(18Q23) MUTATED      9  127
  DEL PEAK 41(18Q23) WILD-TYPE   35  794
                        clus
vv                       DEL PEAK 41(18Q23) MUTATED
  HISPANIC OR LATINO                              9
  NOT HISPANIC OR LATINO                        127
                        clus
vv                       DEL PEAK 41(18Q23) WILD-TYPE
  HISPANIC OR LATINO                               35
  NOT HISPANIC OR LATINO                          794
[1] 2 2
[1] FALSE

Clustering(72) Variable = DEL PEAK 42(19Q13.41) MUTATION ANALYSIS
D72V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 42(19Q13.41) MUTATED   226 133
  DEL PEAK 42(19Q13.41) WILD-TYPE 254 465
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            359                             719 
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            133                             465 
$`DEL PEAK 42(19Q13.41) MUTATED`
TCGA-CS-6670 TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K 
       46.88        31.82        42.05        62.01        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 
       20.45        18.64        21.40        42.77        59.38         8.35 
TCGA-06-5415 TCGA-06-A5U0 TCGA-06-A6S1 TCGA-12-1598 TCGA-12-3651 TCGA-14-0740 
        8.55        26.79         2.56        15.65        12.69        11.97 
TCGA-14-0783 TCGA-14-0862 TCGA-14-0865 TCGA-14-1451 TCGA-14-1458 TCGA-14-4157 
        6.21         2.89        16.50        23.11         6.67         3.42 
TCGA-16-1460 TCGA-19-0960 TCGA-19-1390 TCGA-19-2629 TCGA-26-5136 TCGA-27-1834 
        6.41         8.61        25.38        24.23        18.97        40.54 
TCGA-27-2519 TCGA-27-2521 TCGA-28-1746 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
       18.08        16.77         0.20        15.39        21.07         0.49 
TCGA-32-1978 TCGA-32-1987 TCGA-32-2491 TCGA-32-4208 TCGA-32-4210 TCGA-41-2575 
       15.85        14.86        12.23        21.14         3.72         9.53 
TCGA-41-5651 TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 TCGA-76-6193 TCGA-76-6285 
       15.12         4.80         3.65         9.17         2.70         8.35 
TCGA-76-6662 TCGA-76-6664 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5394 
       34.45        36.20        43.89        36.36        60.10         0.26 
TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       53.62        49.94       122.73        81.96        75.25        47.93 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XG 
       50.86        91.13        44.52        18.84        30.21        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U 
       31.63        24.20        30.12         5.98        31.40        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-5142 
       29.23        14.40        12.10        11.24        19.96        63.88 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       24.59        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 
       23.21        14.56        17.46         6.81       182.33        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       15.16        52.11        22.42        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 
        1.22       114.08         7.96         2.40        62.96       154.36 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7302 
       14.99       117.40        30.67        94.32        18.94        60.30 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8168 TCGA-DU-A5TP 
       41.98         2.76        21.40        16.96        14.17        33.27 
TCGA-DU-A5TS TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76R 
       31.69        25.55        21.57        95.11        22.29        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG 
       17.98       139.04        84.33        51.52        37.38        44.42 
TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       50.14        41.13        79.99       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU 
      130.78        29.13        12.43        75.02        15.32         0.76 
TCGA-E1-A7YY TCGA-E1-A7Z4 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 
      146.14       145.05        39.48         0.23        47.77        52.21 
TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       36.82        42.54        15.35        17.88        22.55        20.61 
TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A6IZ TCGA-FG-A6J1 
       16.01        14.96        38.27        18.71        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A710 TCGA-FG-A711 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       22.26        36.66        48.69         0.10         6.67        11.54 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7475 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7601 
        0.13         0.03        17.42        75.19        95.93         5.03 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7616 
        4.57        17.29         3.16        22.06        56.09         0.23 
TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       14.27        16.24        44.68         0.10        31.69        14.96 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 
        2.96         6.90        14.53        39.09         0.23        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 
        0.33         0.13        35.47         1.64         9.40         6.25 
TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R7 
        5.56         0.23        28.27        15.72        26.04        20.22 
TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HT-A618 TCGA-HT-A61B TCGA-HT-A74K TCGA-HT-A74L 
        0.07        16.93        16.83        17.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 
        0.10        56.58        45.44        68.32        35.44        24.92 
TCGA-HW-A5KJ TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EZ TCGA-P5-A5F0 
       31.63        14.40         0.23         7.99         2.30         9.44 
TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A737 
        7.96         1.28        11.64        10.95         9.01        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V 
       19.20         3.45         2.37         4.41        15.16        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 
       15.85        14.04        14.83        13.41         9.17        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       16.34        16.73         1.91        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       94.03        32.65        30.87         5.46         9.90        28.08 
TCGA-RY-A847 TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       30.67        18.77        41.10        40.93        35.38        36.82 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH 
       29.85        32.61       123.65        75.25       135.22        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS 
       84.99        31.10        26.47        18.64        36.13         7.92 
TCGA-S9-A7IY TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY 
       23.51         8.19         2.04        20.68        15.06        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C5 TCGA-TM-A84B 
       27.16       169.84        31.59        18.71        49.32        24.92 
TCGA-TM-A84G TCGA-TM-A84J TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       40.64        24.16        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RM 
       14.93        21.37        19.69        15.98         2.04        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RW TCGA-TQ-A8XE 
       33.73        31.20        26.14        33.93        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS 
       45.93        13.51         0.10        39.16        37.05        23.21 
TCGA-W9-A837 TCGA-WY-A858 TCGA-02-0026 TCGA-02-0028 TCGA-02-0034 TCGA-02-0055 
       51.06        43.96        24.59        90.58        14.14         2.50 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0079 TCGA-02-0104 TCGA-02-0106 
        8.35         9.57         6.02        27.25        65.00        11.67 
TCGA-02-0114 TCGA-02-0258 TCGA-02-0260 TCGA-02-0281 TCGA-02-0321 TCGA-02-0325 
       99.98        16.54        16.93         3.98         9.90        10.62 
TCGA-02-0432 TCGA-02-0456 TCGA-02-2466 TCGA-06-0132 TCGA-06-0149 TCGA-06-0152 
       47.11         3.35        16.80        25.35         8.61        12.33 
TCGA-06-0237 TCGA-06-0394 TCGA-06-0745 TCGA-06-0875 TCGA-06-0878 TCGA-06-1084 
       13.64        10.82         7.86        43.46         7.17        23.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2569 TCGA-06-6693 TCGA-08-0244 TCGA-08-0245 
       17.65        12.56         0.43       120.56        22.68        37.84 
TCGA-08-0344 TCGA-08-0346 TCGA-08-0349 TCGA-08-0351 TCGA-08-0358 TCGA-08-0386 
      115.86         8.42         9.80        65.33        22.29        18.02 
TCGA-08-0392 TCGA-08-0517 TCGA-12-0619 TCGA-12-0656 TCGA-12-0772 TCGA-12-0827 
        0.72        58.68        34.92        94.78        53.85        38.76 
TCGA-12-1088 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1099 TCGA-15-1444 
      127.59        12.23        15.85        14.53         4.14        50.53 
TCGA-16-0850 TCGA-19-1388 TCGA-28-2514 TCGA-28-5211 TCGA-87-5896 
       16.37        12.95         5.26        11.77        26.30 

$`DEL PEAK 42(19Q13.41) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DU-A76O TCGA-E1-A7YN 
        1.48         3.98        51.55        46.72        17.16        23.90 
TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 
       45.60        15.32        11.74         3.55         4.54         8.81 
TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         6.71         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.23         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
        4.96         1.87         3.12        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       21.73        25.68        14.73         6.77        59.77        44.02 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       26.93        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 
        3.22         2.04        15.12         0.95        23.05        13.78 
TCGA-14-0812 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
        3.25        26.33        15.95         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       32.05        58.78         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
       40.96        12.43         0.99         1.97        17.79        17.85 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.17        17.49         7.96         3.78 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       17.59        29.03         4.57        10.29        14.01         9.14 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 
       21.24        13.97        14.27         3.39         3.65         7.17 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16         4.08         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-19-A6J5 
       22.49        14.07        16.80        14.96        17.79        28.54 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        8.88        19.33         5.06        16.60         9.86        24.23 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 
       21.30        30.05        14.04        11.51        24.76        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.78         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.35         7.63         8.48         1.22         1.55         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-32-1977 TCGA-32-1979 
        0.13         0.66         6.74         4.77         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
        1.18         4.67        12.69        16.93        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 
       15.95         8.84        22.78        25.18        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 
       10.85        19.23         0.85        13.35         8.94         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-4W-AA9R TCGA-4W-AA9S 
        4.44        11.84         0.20        12.46         4.08         1.45 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       25.58         3.45        20.91         4.34        14.33         8.22 
TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        7.50         4.54         3.09         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        3.29        17.06        20.98         4.83         5.03        23.90 
TCGA-76-6663 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 
       18.64         5.92         6.28        20.55       117.50         7.69 
TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       40.18        21.01         6.38        17.69        26.76        37.38 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5276 TCGA-DB-5280 TCGA-DB-5281 
       46.95        48.30        49.12        72.92        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O TCGA-DB-A64S 
       46.42        39.78        37.45        33.57        25.48        27.45 
TCGA-DB-A64X TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5143 TCGA-DH-A7UT 
       18.51        17.88        30.74        16.18        46.06        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       13.71        18.61        18.02         6.74        13.38         8.45 
TCGA-DU-5871 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       18.94       211.17        49.02        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-7006 TCGA-DU-7008 
      133.74        19.89        16.83        94.52        11.47       156.23 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 
      105.21         6.54         8.84        90.77        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-8158 TCGA-DU-8161 
        7.96        44.02        25.91        23.31         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-A5TR TCGA-DU-A5TT 
       14.60        20.68        19.13        15.48        29.85        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L 
       26.17        24.99        33.96        20.98        11.41        26.76 
TCGA-DU-A7TD TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5307 TCGA-E1-A7YD 
        7.50        38.89         0.56        67.46        57.93        14.30 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YQ 
       93.21         3.65        19.46        16.18        21.30        51.88 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z6 TCGA-F6-A8O4 
       32.45        36.82        13.08        73.48        32.35         0.20 
TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7643 
       25.48        18.77        14.93        41.33        18.44        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MU 
       28.34        13.68        14.24        22.52        32.61        10.72 
TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A70Y TCGA-FG-A70Z 
       18.38        23.70        14.76        21.53        28.54        10.78 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 
        5.72        27.52        40.11        16.54         3.75         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       24.26         6.38        40.34       106.95       172.77         4.01 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7676 
       29.85        23.18       122.47        45.99        57.60         0.16 
TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 
        0.76         6.05        42.74         0.10         0.10        17.52 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 
       39.48        19.23        50.63         0.49        23.61         3.68 
TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 
        5.33         3.72        11.28        31.43        16.24        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 
        0.10        37.87        33.01        12.23         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-A4DS TCGA-HT-A5R5 
        2.50        13.78        29.59        34.19         0.23         0.13 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A617 
       27.35         0.10         5.33         2.70         1.81        16.14 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-8319 
       17.65         2.43        10.52        41.49        69.27        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       40.01        42.54        12.76        28.87        20.71        19.00 
TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A72U 
       14.40         6.71         2.37         5.88         7.59         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-QH-A65S 
       10.42        13.25        13.61         9.60         7.56         2.53 
TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6XA 
       19.33        14.53        13.61        12.23        10.29        16.50 
TCGA-QH-A6XC TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6U0 
       16.70         2.07        19.59        62.17        87.12        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG 
       25.81        35.15        98.24        95.93         5.85        85.55 
TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 
       19.86        18.61        14.07        26.93        19.99        20.02 
TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89Z 
       18.54        10.39        99.06        30.05        98.63        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       54.77        48.33        34.78        65.39        16.18        59.05 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84T TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       30.44        28.08        40.83        23.80        40.41        44.09 
TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-VM-A8C9 TCGA-VM-A8CD TCGA-VM-A8CF 
       30.05        25.87        61.41        43.20         7.89        20.02 
TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A859 TCGA-WY-A85A 
       23.47        16.01         8.05        13.32        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 
       45.80        46.88        37.71        20.81         7.63        11.77 
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.59        20.61        87.06        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       42.74        12.16         2.83         3.62        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.31         6.87        14.73         3.22        15.09        12.59 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        6.54        19.86        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        89.72        22.72        12.62 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.32         8.81        57.76        16.96         3.48        27.02 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0266 
       17.65        23.18        92.65        15.65        48.95        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.73         7.33        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        14.50        10.55        11.34         9.27 
TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.21        12.92        15.32        15.45        20.32         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       33.67        12.95        14.30        26.70        24.23        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20        10.29         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       17.79        10.09        19.46        46.59        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19        10.82         9.44        11.80         3.42        56.91 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.85        19.66         3.29        13.12         4.47 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        3.22         4.04        91.00         4.18        88.14        20.25 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        3.65        69.90        73.84        27.22        44.58        15.42 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.42        38.96         4.67         7.40         5.56         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        7.66         8.42         7.40        11.84         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        19.82        13.32        20.42        48.69 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        9.01         0.26        72.36         4.70         9.57         3.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.11        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 
       23.57        14.20        26.40        46.88         2.70         2.70 
TCGA-06-0750 TCGA-06-0876 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        0.92        46.19        40.41        16.57        20.78        26.76 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2563 TCGA-06-2564 
       33.90         1.08        12.49         4.93        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-6389 TCGA-06-6390 
       16.64         5.98         4.37        31.50         7.79         5.39 
TCGA-06-6694 TCGA-08-0246 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 
        7.36         4.18         1.74        25.71        12.16        29.23 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         8.42        17.95        24.56        31.10        37.58 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
        3.39        12.23        14.93        15.35        13.97        12.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 
        4.27        42.15        11.08        19.59        19.33        10.75 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        4.80         7.27        15.98        18.41         7.56        14.73 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       12.99        10.45         7.59         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       26.66        12.13         3.65        20.38        28.41        15.06 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.23         7.63         9.73        14.93        14.86        91.76 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       24.79        18.48        10.62        23.51        27.78         8.94 
TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1096 
       20.58         5.82         7.59        33.21        15.98         9.11 
TCGA-12-1098 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        3.98         2.24        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
       28.93        19.30         0.79        13.78        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       13.28         3.91        26.07        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-26-1442 TCGA-26-5133 
       10.75         9.07         5.95         4.64        31.33        14.86 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5204 
        5.49         1.58         7.92         2.33         7.30        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       11.28        17.88        14.53        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 
       13.64         5.16        22.68        12.76         5.42         7.36 
TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
       11.38         5.42         3.75         1.61        17.72 

  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                         182.33                          211.17 
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                          20.22                           14.40 
[1] "0.0 - 182.3 (20.2)" "0.1 - 211.2 (14.4)"
[1] "hr=" "2.5"
D72V2, continuous
D72V3, binary
                                 cls
clus                                0   1
  DEL PEAK 42(19Q13.41) MUTATED    97 267
  DEL PEAK 42(19Q13.41) WILD-TYPE 476 245
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(19Q13.41) MUTATED     97  267
  DEL PEAK 42(19Q13.41) WILD-TYPE  476  245
                        clus
vv                       DEL PEAK 42(19Q13.41) MUTATED
  BRAIN                                             97
  CENTRAL NERVOUS SYSTEM                           267
                        clus
vv                       DEL PEAK 42(19Q13.41) WILD-TYPE
  BRAIN                                              476
  CENTRAL NERVOUS SYSTEM                             245
[1] 2 2
[1] FALSE
D72V4, binary
                                 cls
clus                                0   1
  DEL PEAK 42(19Q13.41) MUTATED   162 202
  DEL PEAK 42(19Q13.41) WILD-TYPE 291 430
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(19Q13.41) MUTATED    162  202
  DEL PEAK 42(19Q13.41) WILD-TYPE  291  430
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  FEMALE                           162                             291
  MALE                             202                             430
[1] 2 2
[1] FALSE
D72V5, binary
                                 cls
clus                                0   1
  DEL PEAK 42(19Q13.41) MUTATED   123 220
  DEL PEAK 42(19Q13.41) WILD-TYPE 135 550
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(19Q13.41) MUTATED    123  220
  DEL PEAK 42(19Q13.41) WILD-TYPE  135  550
     clus
vv    DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  NO                            123                             135
  YES                           220                             550
[1] 2 2
[1] FALSE
D72V6, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 42(19Q13.41) MUTATED            54                             3
  DEL PEAK 42(19Q13.41) WILD-TYPE         140                            27
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 42(19Q13.41) MUTATED                 60               153
  DEL PEAK 42(19Q13.41) WILD-TYPE               69                36
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 42(19Q13.41) MUTATED                     4
  DEL PEAK 42(19Q13.41) WILD-TYPE                  14
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 42(19Q13.41) MUTATED                                90
  DEL PEAK 42(19Q13.41) WILD-TYPE                             435
D72V7, multiclass
                                 clus
vv                                DEL PEAK 42(19Q13.41) MUTATED
  ASTROCYTOMA                                                54
  GLIOBLASTOMA MULTIFORME (GBM)                               3
  OLIGOASTROCYTOMA                                           60
  OLIGODENDROGLIOMA                                         153
  TREATED PRIMARY GBM                                         4
  UNTREATED PRIMARY (DE NOVO) GBM                            90
                                 clus
vv                                DEL PEAK 42(19Q13.41) WILD-TYPE
  ASTROCYTOMA                                                 140
  GLIOBLASTOMA MULTIFORME (GBM)                                27
  OLIGOASTROCYTOMA                                             69
  OLIGODENDROGLIOMA                                            36
  TREATED PRIMARY GBM                                          14
  UNTREATED PRIMARY (DE NOVO) GBM                             435
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 42(19Q13.41) MUTATED                                  0     8
  DEL PEAK 42(19Q13.41) WILD-TYPE                                1    13
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 42(19Q13.41) MUTATED                          21   326
  DEL PEAK 42(19Q13.41) WILD-TYPE                        50   633
D72V8, multiclass
                                  clus
vv                                 DEL PEAK 42(19Q13.41) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        8
  BLACK OR AFRICAN AMERICAN                                   21
  WHITE                                                      326
                                  clus
vv                                 DEL PEAK 42(19Q13.41) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         13
  BLACK OR AFRICAN AMERICAN                                     50
  WHITE                                                        633
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V9, binary
                                 cls
clus                                0   1
  DEL PEAK 42(19Q13.41) MUTATED    20 314
  DEL PEAK 42(19Q13.41) WILD-TYPE  24 607
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(19Q13.41) MUTATED     20  314
  DEL PEAK 42(19Q13.41) WILD-TYPE   24  607
                        clus
vv                       DEL PEAK 42(19Q13.41) MUTATED
  HISPANIC OR LATINO                                20
  NOT HISPANIC OR LATINO                           314
                        clus
vv                       DEL PEAK 42(19Q13.41) WILD-TYPE
  HISPANIC OR LATINO                                  24
  NOT HISPANIC OR LATINO                             607
[1] 2 2
[1] FALSE

Clustering(73) Variable = DEL PEAK 43(19Q13.43) MUTATION ANALYSIS
D73V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 43(19Q13.43) MUTATED   230 120
  DEL PEAK 43(19Q13.43) WILD-TYPE 250 478
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                            350                             728 
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                            120                             478 
$`DEL PEAK 43(19Q13.43) MUTATED`
TCGA-CS-6670 TCGA-DH-5141 TCGA-DH-A66B TCGA-DU-7300 TCGA-FG-8187 TCGA-FG-A60K 
       46.88        31.82        42.05        62.01        20.09        17.82 
TCGA-FG-A713 TCGA-FG-A87N TCGA-HT-A619 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5411 
       20.45        18.64        21.40        42.77        59.38         8.35 
TCGA-06-5859 TCGA-06-A5U0 TCGA-06-A6S1 TCGA-12-1598 TCGA-12-1602 TCGA-12-3651 
        4.57        26.79         2.56        15.65         6.77        12.69 
TCGA-14-0740 TCGA-14-0783 TCGA-14-0862 TCGA-14-0865 TCGA-14-1458 TCGA-14-1821 
       11.97         6.21         2.89        16.50         6.67        17.79 
TCGA-14-4157 TCGA-16-1460 TCGA-19-0960 TCGA-19-1390 TCGA-19-2629 TCGA-19-A6J5 
        3.42         6.41         8.61        25.38        24.23        28.54 
TCGA-26-5136 TCGA-27-1834 TCGA-27-2519 TCGA-27-2521 TCGA-28-1746 TCGA-32-1973 
       18.97        40.54        18.08        16.77         0.20        21.07 
TCGA-32-1987 TCGA-32-2491 TCGA-32-4208 TCGA-32-4210 TCGA-41-2575 TCGA-76-4925 
       14.86        12.23        21.14         3.72         9.53         4.80 
TCGA-76-4929 TCGA-76-4931 TCGA-76-6193 TCGA-76-6285 TCGA-76-6662 TCGA-76-6664 
        3.65         9.17         2.70         8.35        34.45        36.20 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6666 
       43.89        36.36        60.10         0.26        53.62        46.95 
TCGA-CS-6668 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 
       49.94       122.73        81.96        75.25        47.93        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XG TCGA-DB-A4XH 
       91.13        44.52        18.84        30.21        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V 
       24.20        30.12         5.98        31.40        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75L TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5144 
       14.40        12.10        11.24        19.96        63.88        24.59 
TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       30.21        27.81        17.19        17.19        54.25        23.21 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       14.56        17.46         6.81       182.33        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       52.11        22.42        75.16        46.06        65.75         1.22 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 TCGA-DU-7010 
      114.08         7.96         2.40        62.96       154.36        14.99 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7302 
      117.40        90.77        30.67        94.32        18.94        60.30 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS 
       41.98         2.76        21.40        14.17        33.27        31.69 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 
       25.55        21.57        95.11        22.29        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-E1-5302 
      139.04        84.33        51.52        37.38        44.42        50.14 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       41.13        79.99       134.27        78.21        95.57       130.78 
TCGA-E1-A7YE TCGA-E1-A7YK TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YY 
       29.13        12.43        75.02        15.32         0.76       146.14 
TCGA-E1-A7Z4 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 
      145.05        39.48         0.23        47.77        52.21        36.82 
TCGA-FG-6690 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8186 
       42.54        15.35        17.88        22.55        20.61        16.01 
TCGA-FG-8188 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.96        38.27        18.71        15.02        16.44        22.26 
TCGA-FG-A710 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
       36.66         0.10         6.67        11.54         0.13         0.03 
TCGA-HT-7475 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7605 
       17.42        75.19        95.93       172.77         5.03         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 
       17.29         3.16        22.06        45.99        56.09         0.23 
TCGA-HT-7677 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7692 TCGA-HT-7695 
       16.24        44.68         0.10        14.96         2.96        14.53 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 
       39.09         0.23        37.15         0.33         0.13        35.47 
TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8563 
        1.64         9.40         6.25         5.56         0.23        28.27 
TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HT-A618 
       15.72        26.04        20.22         0.07        16.93        16.83 
TCGA-HT-A61B TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       17.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-KT-A74X 
       68.32        35.44        40.01        24.92        31.63        14.40 
TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F2 TCGA-P5-A5F6 
        0.23         7.99         2.30         9.44         7.96         1.28 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A735 TCGA-P5-A737 TCGA-P5-A77W 
       11.64        10.95         9.01         9.60        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X 
        3.45         2.37         4.41        15.16        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 
       14.04        14.83        13.41         9.17        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.73         1.91        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A845 
       32.65        30.87         5.46         9.90        28.08        19.59 
TCGA-RY-A847 TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U2 
       30.67        41.10        40.93        35.38        36.82        29.85 
TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI 
       32.61       123.65        75.25       135.22        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY 
       31.10        26.47        18.64        36.13         7.92        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ 
        8.19         2.04        20.68        15.06        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C5 TCGA-TM-A84B TCGA-TM-A84G 
      169.84        31.59        18.71        49.32        24.92        40.64 
TCGA-TM-A84J TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       24.16        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RM 
       23.80        21.37        19.69        15.98         2.04        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RW TCGA-TQ-A8XE 
       33.73        31.20        26.14        33.93        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VV-A829 TCGA-VW-A7QS 
       45.93        13.51         0.10        39.16        37.05        23.21 
TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 TCGA-02-0010 TCGA-02-0025 TCGA-02-0026 
       51.06        43.96        39.88        35.41        42.74        24.59 
TCGA-02-0028 TCGA-02-0034 TCGA-02-0055 TCGA-02-0058 TCGA-02-0060 TCGA-02-0104 
       90.58        14.14         2.50         8.35         6.02        65.00 
TCGA-02-0106 TCGA-02-0258 TCGA-02-0281 TCGA-02-0321 TCGA-02-0325 TCGA-02-0432 
       11.67        16.54         3.98         9.90        10.62        47.11 
TCGA-02-0456 TCGA-02-2466 TCGA-06-0132 TCGA-06-0394 TCGA-06-0745 TCGA-06-0875 
        3.35        16.80        25.35        10.82         7.86        43.46 
TCGA-06-2561 TCGA-06-2569 TCGA-06-2570 TCGA-08-0344 TCGA-08-0346 TCGA-08-0349 
       17.65         0.43        31.50       115.86         8.42         9.80 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0358 TCGA-08-0386 TCGA-08-0392 TCGA-08-0516 
       29.23        65.33        22.29        18.02         0.72        19.59 
TCGA-08-0517 TCGA-12-0619 TCGA-12-0656 TCGA-12-0691 TCGA-12-0827 TCGA-12-1088 
       58.68        34.92        94.78        12.13        38.76       127.59 
TCGA-12-1095 TCGA-12-1097 TCGA-14-0787 TCGA-15-1444 TCGA-16-0850 TCGA-19-1388 
       15.85        14.53         2.24        50.53        16.37        12.95 
TCGA-26-1442 TCGA-26-5133 
       31.33        14.86 

$`DEL PEAK 43(19Q13.43) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6665 TCGA-DB-A4XC TCGA-DU-A76O TCGA-E1-A7YN 
        1.48         3.98        51.55        46.72        17.16        23.90 
TCGA-HW-7490 TCGA-06-1806 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 
       45.60        15.32        11.74         3.55         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.15 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        5.23         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-06-A5U1 TCGA-06-A6S0 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 
        4.96         1.87         3.12        14.60        17.72        15.35 
TCGA-12-1092 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       21.73        25.68        14.73        59.77        44.02        26.93 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 
        2.04        15.12         0.95        23.05        13.78         3.25 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       26.33        15.95         1.38         1.12         3.75        32.05 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.18         0.92 
TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 
       40.96        12.43         0.99         1.97        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-16-0848 
        5.88         7.17        17.49         7.96         3.78        17.59 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.03         4.57        10.29        14.01         9.14        21.24 
TCGA-16-1063 TCGA-19-0963 TCGA-19-0964 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       13.97        14.27         3.39         3.65         7.17        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08         7.00         7.04         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.90         4.73        12.10         1.78        22.49 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-19-A60I TCGA-26-1438 TCGA-26-1439 
       14.07        16.80        14.96        17.79        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-A7UX 
        9.73         7.13         9.37         9.40         8.88        19.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
        5.06        16.60         9.86        24.23        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       14.04        11.51        24.76        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       14.40        15.78         2.53         9.21         8.35         7.63 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.48         1.22         1.55         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        6.74         4.77        15.39         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 
       15.02        15.95         8.84        22.78        25.18        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-4W-AA9R TCGA-4W-AA9S TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.08         1.45        25.58         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4934 
       14.33         8.22         7.50         4.54         3.09         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 
       36.85        16.70         3.29        17.06        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-OX-A56R TCGA-RR-A6KA TCGA-RR-A6KC 
        5.03        23.90        18.64         5.92         6.28        20.55 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 
      117.50         7.69        40.18        21.01         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5276 TCGA-DB-5280 
       26.76        37.38        48.30        49.12        72.92        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64O 
       78.28        46.42        39.78        37.45        33.57        25.48 
TCGA-DB-A64S TCGA-DB-A64X TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5143 
       27.45        18.51        17.88        30.74        16.18        46.06 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 
       17.46        13.71        18.61        18.02         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5871 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6401 TCGA-DU-6402 
        8.45        18.94       211.17        49.02        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-7006 
       11.64       133.74        19.89        16.83        94.52        11.47 
TCGA-DU-7008 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7019 TCGA-DU-7290 
      156.23       105.21         6.54         8.84        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-8158 TCGA-DU-8161 
        7.96        44.02        25.91        23.31         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TR 
       14.60        20.68        19.13        16.96        15.48        29.85 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S7 TCGA-DU-A76K 
       24.43        26.17        24.99        33.96        20.98        11.41 
TCGA-DU-A76L TCGA-DU-A7TD TCGA-DU-A7TI TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5307 
       26.76         7.50        38.89         0.56        67.46        57.93 
TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM 
       14.30        93.21         3.65        19.46        16.18        21.30 
TCGA-E1-A7YQ TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z6 
       51.88        32.45        36.82        13.08        73.48        32.35 
TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-6692 
        0.20        25.48        18.77        14.93        41.33        18.44 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8189 TCGA-FG-8191 
       20.09        28.34        13.68        14.24        22.52        32.61 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A70Y 
       10.72        18.38        23.70        14.76        21.53        28.54 
TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7473 
       10.78        48.69         5.72        27.52        40.11        16.54 
TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 
        3.75         6.54        24.26         6.38        40.34       106.95 
TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7611 TCGA-HT-7620 
        4.01        29.85        23.18       122.47        57.60        14.27 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7690 
        0.16         0.76         6.05        42.74        31.69         0.10 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7858 
        0.10        17.52         6.90        39.48        19.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 
        0.49        23.61         3.68         5.33         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       31.43        16.24        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8113 
       12.23         0.10         0.46         2.50        13.78        29.59 
TCGA-HT-8114 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       34.19         0.23         0.13        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
        2.70         1.81        16.14        17.65         2.43        10.52 
TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-8319 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL 
       41.49        69.27        39.75        42.54        12.76        28.87 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5F1 
       20.71        19.00        14.40         6.71         2.37         5.88 
TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 TCGA-P5-A736 
        7.59         0.23        10.42        13.25        13.61         7.56 
TCGA-QH-A65S TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 
        2.53        19.33        14.53        13.61        12.23        10.29 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-RY-A843 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       16.50        16.70         2.07        62.17        87.12        18.77 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       24.39        25.81        35.15        98.24        95.93         5.85 
TCGA-S9-A6WG TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IX TCGA-S9-A7IZ 
       85.55        19.86        18.61        14.07        26.93        19.99 
TCGA-S9-A7J0 TCGA-S9-A7QX TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       20.02        18.54        10.39        99.06        30.05        98.63 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C 
       20.48        54.77        48.33        34.78        65.39        16.18 
TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       59.05        30.44        28.08        40.83        40.41        44.09 
TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-VM-A8C9 TCGA-VM-A8CD TCGA-VM-A8CF 
       30.05        25.87        61.41        43.20         7.89        20.02 
TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A85A TCGA-WY-A85B 
       23.47        16.01         8.05        13.32        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       46.88        37.71        20.81         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
       18.35        23.18        10.59        20.71        82.59        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0027 TCGA-02-0033 
       87.06        77.65        20.12        53.10        12.16         2.83 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.62        10.72        10.52        18.31         6.87        14.73 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 
        3.22        15.09        12.59         6.54        19.86         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.25        89.72        22.72        12.62        51.32 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0107 
        8.81        57.76        16.96         3.48        27.02        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       23.18        92.65        99.98        15.65        48.95        16.93 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.72        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
       12.23         7.73         7.33        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
       25.12        10.59        12.39        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        9.27        16.21        12.92        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         6.15        20.38        47.61         6.94         3.98 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        33.67        12.95        14.30        26.70        24.23 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       11.90         0.20        10.29         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        17.79        10.09         8.61        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       12.33        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         3.42        56.91        10.65         5.85        19.66 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.29        13.12         4.47         3.22         4.04        91.00 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        4.18        88.14        20.25         3.65        69.90        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       27.22        44.58        15.42        10.42        38.96         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.40         5.56         0.39         7.66         8.42         7.40 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.53        15.02        24.16         0.72        19.82 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 TCGA-06-0402 
       13.64        13.32        20.42        48.69         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       72.36         4.70         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 
       26.40        46.88         2.70         2.70         0.92        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        40.41        16.57        20.78        26.76        23.93 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.84         4.04        26.79        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08        12.49         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-6389 TCGA-06-6390 
        5.95        16.64         5.98         4.37         7.79         5.39 
TCGA-06-6693 TCGA-06-6694 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 
      120.56         7.36        22.68        37.84         4.18         1.74 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       25.71        12.16         1.28         8.42        17.95        24.56 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       31.10        37.58         3.39        12.23        14.93        15.35 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 
       13.97        12.56         4.27        42.15        11.08        19.33 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.75         4.80         7.27        15.98        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 
       14.73        12.99        10.45         7.59         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       25.97        26.66         3.65        20.38        28.41        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.76        24.79        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
        8.94        20.58         5.82         7.59        33.21        15.98 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-14-0789 TCGA-14-0813 
       12.23         9.11         3.98         4.14        11.24         1.35 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-0742 
        5.39         2.04        28.93        19.30         0.79        13.78 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-19-0955 
       19.10        53.19        13.28         3.91        26.07        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       21.90         0.66        10.75         9.07         5.95         4.64 
TCGA-26-5134 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-2514 
        5.49         1.58         7.92         2.33         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88        14.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        12.76 
TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 TCGA-76-6660 TCGA-81-5910 
        5.42         7.36        11.38         5.42         3.75         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                         182.33                          211.17 
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                         21.335                          14.285 
[1] "0.0 - 182.3 (21.3)" "0.1 - 211.2 (14.3)"
[1] "hr=" "2.9"
D73V2, continuous
D73V3, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.43) MUTATED    85 270
  DEL PEAK 43(19Q13.43) WILD-TYPE 488 242
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.43) MUTATED     85  270
  DEL PEAK 43(19Q13.43) WILD-TYPE  488  242
                        clus
vv                       DEL PEAK 43(19Q13.43) MUTATED
  BRAIN                                             85
  CENTRAL NERVOUS SYSTEM                           270
                        clus
vv                       DEL PEAK 43(19Q13.43) WILD-TYPE
  BRAIN                                              488
  CENTRAL NERVOUS SYSTEM                             242
[1] 2 2
[1] FALSE
D73V4, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.43) MUTATED   157 198
  DEL PEAK 43(19Q13.43) WILD-TYPE 296 434
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.43) MUTATED    157  198
  DEL PEAK 43(19Q13.43) WILD-TYPE  296  434
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  FEMALE                           157                             296
  MALE                             198                             434
[1] 2 2
[1] FALSE
D73V5, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.43) MUTATED   124 211
  DEL PEAK 43(19Q13.43) WILD-TYPE 134 559
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.43) MUTATED    124  211
  DEL PEAK 43(19Q13.43) WILD-TYPE  134  559
     clus
vv    DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  NO                            124                             134
  YES                           211                             559
[1] 2 2
[1] FALSE
D73V6, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 43(19Q13.43) MUTATED            58                             4
  DEL PEAK 43(19Q13.43) WILD-TYPE         136                            26
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 43(19Q13.43) MUTATED                 62               150
  DEL PEAK 43(19Q13.43) WILD-TYPE               67                39
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 43(19Q13.43) MUTATED                     4
  DEL PEAK 43(19Q13.43) WILD-TYPE                  14
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 43(19Q13.43) MUTATED                                77
  DEL PEAK 43(19Q13.43) WILD-TYPE                             448
D73V7, multiclass
                                 clus
vv                                DEL PEAK 43(19Q13.43) MUTATED
  ASTROCYTOMA                                                58
  GLIOBLASTOMA MULTIFORME (GBM)                               4
  OLIGOASTROCYTOMA                                           62
  OLIGODENDROGLIOMA                                         150
  TREATED PRIMARY GBM                                         4
  UNTREATED PRIMARY (DE NOVO) GBM                            77
                                 clus
vv                                DEL PEAK 43(19Q13.43) WILD-TYPE
  ASTROCYTOMA                                                 136
  GLIOBLASTOMA MULTIFORME (GBM)                                26
  OLIGOASTROCYTOMA                                             67
  OLIGODENDROGLIOMA                                            39
  TREATED PRIMARY GBM                                          14
  UNTREATED PRIMARY (DE NOVO) GBM                             448
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 43(19Q13.43) MUTATED                                  0     8
  DEL PEAK 43(19Q13.43) WILD-TYPE                                1    13
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 43(19Q13.43) MUTATED                          17   321
  DEL PEAK 43(19Q13.43) WILD-TYPE                        54   638
D73V8, multiclass
                                  clus
vv                                 DEL PEAK 43(19Q13.43) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             0
  ASIAN                                                        8
  BLACK OR AFRICAN AMERICAN                                   17
  WHITE                                                      321
                                  clus
vv                                 DEL PEAK 43(19Q13.43) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               1
  ASIAN                                                         13
  BLACK OR AFRICAN AMERICAN                                     54
  WHITE                                                        638
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V9, binary
                                 cls
clus                                0   1
  DEL PEAK 43(19Q13.43) MUTATED    19 307
  DEL PEAK 43(19Q13.43) WILD-TYPE  25 614
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(19Q13.43) MUTATED     19  307
  DEL PEAK 43(19Q13.43) WILD-TYPE   25  614
                        clus
vv                       DEL PEAK 43(19Q13.43) MUTATED
  HISPANIC OR LATINO                                19
  NOT HISPANIC OR LATINO                           307
                        clus
vv                       DEL PEAK 43(19Q13.43) WILD-TYPE
  HISPANIC OR LATINO                                  25
  NOT HISPANIC OR LATINO                             614
[1] 2 2
[1] FALSE

Clustering(74) Variable = DEL PEAK 44(22Q13.32) MUTATION ANALYSIS
D74V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 44(22Q13.32) MUTATED    74 215
  DEL PEAK 44(22Q13.32) WILD-TYPE 406 383
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            289                             789 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            215                             383 
$`DEL PEAK 44(22Q13.32) MUTATED`
TCGA-19-A6J4 TCGA-06-1806 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5418 
        3.98        15.32        11.74         8.35         8.81         2.73 
TCGA-06-5856 TCGA-06-6697 TCGA-06-6698 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-12-1598 
        3.75        12.85         4.77         1.87         2.56        15.65 
TCGA-12-1600 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 
       14.73        44.02        12.69        14.53        14.93        15.12 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0862 TCGA-14-0865 TCGA-14-1034 TCGA-14-1402 
        6.21        23.05         2.89        16.50        15.95        32.05 
TCGA-14-1450 TCGA-14-1454 TCGA-14-1794 TCGA-14-1821 TCGA-14-2554 TCGA-14-3477 
       58.78        30.18         0.99        17.79        17.49         3.78 
TCGA-16-1056 TCGA-16-1062 TCGA-19-0964 TCGA-19-1392 TCGA-19-1791 TCGA-19-2620 
       14.01        21.24         3.39         3.65         0.13         4.87 
TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5956 
        7.53         4.08        24.23         7.00         6.64        22.49 
TCGA-19-5958 TCGA-19-5960 TCGA-19-A60I TCGA-26-5132 TCGA-26-5136 TCGA-27-1830 
       14.07        14.96        17.79         9.40        18.97         5.06 
TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 
        9.86        40.54        21.30        11.51        18.08        16.77 
TCGA-27-2523 TCGA-27-2527 TCGA-28-1746 TCGA-28-1752 TCGA-28-1756 TCGA-28-2506 
       16.08        14.40         0.20         8.48         2.83         6.74 
TCGA-28-2509 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1978 TCGA-32-1980 
        4.77        15.39        21.07         0.49        15.85         1.18 
TCGA-32-1986 TCGA-32-2491 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 
       12.69        12.23        15.95         8.84        22.78        21.14 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
       13.35         8.94         9.53        11.84         0.20        12.46 
TCGA-4W-AA9S TCGA-74-6575 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 
        1.45        20.91         8.22         4.80         4.54         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-6285 TCGA-76-6657 TCGA-OX-A56R TCGA-CS-4943 
        9.17         2.53         8.35         5.03         5.92        36.36 
TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6186 TCGA-DB-5273 TCGA-DB-5277 TCGA-DB-A4XB 
       40.18         6.38        17.69        81.96        50.86        30.21 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A75O TCGA-DH-A669 TCGA-DU-5847 TCGA-DU-5852 
       24.20        25.48        30.74        30.21        18.02         6.74 
TCGA-DU-5853 TCGA-DU-6399 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6542 TCGA-DU-7007 
       13.38        65.75         7.04       133.74         2.40        62.96 
TCGA-DU-7008 TCGA-DU-7290 TCGA-DU-7298 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 
      156.23        10.36        18.94        41.98         5.10        23.74 
TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY 
       19.13        15.48        33.27        24.43        26.17        33.96 
TCGA-DU-A76K TCGA-DU-A76L TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5322 TCGA-E1-A7YE 
       11.41        26.76        67.46        41.13       130.78        29.13 
TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7Z2 TCGA-FG-7643 
       19.46        21.30        15.32         0.76        13.08        20.09 
TCGA-FG-A4MY TCGA-FG-A60L TCGA-HT-7477 TCGA-HT-7611 TCGA-HT-7686 TCGA-HT-7688 
       23.70        21.53        24.26        57.60        42.74        31.69 
TCGA-HT-7690 TCGA-HT-7860 TCGA-HT-A614 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61B 
        0.10         0.49         2.70        16.14        16.83        17.52 
TCGA-HW-A5KK TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A780 TCGA-QH-A6CS TCGA-RY-A83Z 
       12.76         1.28         0.23         2.37        19.33         9.90 
TCGA-S9-A6TS TCGA-S9-A6UA TCGA-S9-A7IX TCGA-S9-A7J0 TCGA-S9-A7R2 TCGA-S9-A7R7 
       62.17         5.85        26.93        20.02        10.39        98.63 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A84B TCGA-TM-A84G TCGA-TQ-A7RM TCGA-TQ-A7RW 
       18.71        20.48        24.92        40.64        36.69        26.99 
TCGA-VM-A8CD TCGA-VM-A8CF TCGA-WH-A86K TCGA-WY-A859 TCGA-02-0007 TCGA-02-0010 
        7.89        20.02        13.32        39.88        23.18        35.41 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0026 TCGA-02-0027 TCGA-02-0039 TCGA-02-0043 
       20.61        87.06        24.59        12.16        10.52        18.31 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 TCGA-02-0075 TCGA-02-0079 
        6.54        19.86         9.57         6.02        20.84        27.25 
TCGA-02-0086 TCGA-02-0099 TCGA-02-0113 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
        8.81         3.48        92.65        16.93        17.72        10.75 
TCGA-02-0271 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0333 TCGA-02-0456 
       14.47         9.90        10.62         7.33         4.37         3.35 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2486 TCGA-06-0129 TCGA-06-0140 TCGA-06-0141 
       16.80        15.32        20.32        33.67         0.20        10.29 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0152 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 
        2.33        17.79        12.33        10.82         9.44         3.42 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0175 TCGA-06-0182 TCGA-06-0185 
       56.91         5.85        19.66         4.04         3.65        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       27.22        44.58        15.42         4.67         7.40         5.56 
TCGA-06-0211 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0241 
       11.84        24.16         0.72        19.82        13.64        48.69 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        9.01         0.26         4.70        46.88         7.86         2.70 
TCGA-06-0875 TCGA-06-0878 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1804 
       43.46         7.17        20.78        26.76        23.93        13.61 
TCGA-06-2558 TCGA-06-2562 TCGA-06-2565 TCGA-06-2567 TCGA-06-6389 TCGA-06-6390 
       12.49        12.56        16.64         4.37         7.79         5.39 
TCGA-06-6693 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0349 TCGA-08-0350 
      120.56        22.68        37.84         4.18         9.80        29.23 
TCGA-08-0354 TCGA-08-0357 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 
       17.95        37.58        18.02        15.35         0.72        42.15 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0520 TCGA-08-0525 TCGA-12-0619 TCGA-12-0620 
       11.08        19.59        10.75        15.98        34.92        10.45 
TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0707 TCGA-12-0820 TCGA-12-0821 
       94.78        38.17        25.97        28.41        18.48        10.62 
TCGA-12-0826 TCGA-12-0827 TCGA-12-1088 TCGA-12-1091 TCGA-12-1096 TCGA-12-1097 
       27.78        38.76       127.59        33.21         9.11        14.53 
TCGA-12-1098 TCGA-14-0787 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-15-0742 
        3.98         2.24         2.04        28.93        19.30        13.78 
TCGA-15-1444 TCGA-15-1447 TCGA-19-0962 TCGA-19-1385 TCGA-19-1389 TCGA-26-1442 
       50.53        53.19         0.66        10.75         4.64        31.33 
TCGA-26-6173 TCGA-28-5207 TCGA-28-5208 TCGA-28-5213 TCGA-28-5214 TCGA-76-6280 
        7.92        11.28        17.88        31.27        23.44        11.38 
TCGA-87-5896 
       26.30 

$`DEL PEAK 44(22Q13.32) WILD-TYPE`
TCGA-06-6391 TCGA-CS-6665 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48        51.55        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-5410 
       18.64        21.40        45.60        42.77        59.38         3.55 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5858 TCGA-06-5859 
        4.54         8.98         8.55         6.71         6.15         4.57 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-06-A5U0 
        5.23         8.32         1.55         4.77         4.96        26.79 
TCGA-06-A6S0 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-0615 TCGA-12-1092 TCGA-12-1599 
        3.12        14.60        17.72        15.35        21.73        25.68 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        6.77        59.77        26.93        15.22        10.95        34.92 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0790 TCGA-14-0812 
        3.22         2.04        11.97         0.95        13.78         3.25 
TCGA-14-0866 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 
       26.33         1.38         1.12         3.75        23.11         7.10 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
        1.15         0.92        40.96         6.67        12.43         1.97 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-4157 
       17.85         7.63         5.88         7.17         7.96         3.42 
TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1063 
       17.59        29.03         4.57        10.29         9.14        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        6.41         8.61        14.27        25.38         7.17        12.66 
TCGA-19-1789 TCGA-19-2619 TCGA-19-2621 TCGA-19-2624 TCGA-19-4065 TCGA-19-5950 
        3.25         9.67         1.08         0.16         7.04        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5959 
        8.02        18.90         4.73        12.10         1.78        16.80 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
       28.54        10.03        13.87         9.73         7.13         9.37 
TCGA-26-5135 TCGA-26-A7UX TCGA-27-1831 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 
        8.88        19.33        16.60        24.23        30.05        14.04 
TCGA-27-2518 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
       24.76         7.59         2.86        15.78         2.53         9.21 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 
        8.35         7.63         1.22         1.55         0.13         0.66 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 
        0.10        19.50         4.67        14.86        16.93        20.78 
TCGA-32-2495 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       15.02        25.18         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-4W-AA9R 
       19.23         0.85         0.99         4.44        15.12         4.08 
TCGA-4W-AA9T TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4928 
       25.58         3.45         4.34        14.33         7.50         3.09 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6286 
       36.85        16.70         3.29         2.70        17.06        20.98 
TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA 
        4.83        23.90        34.45        18.64        36.20         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5394 
       20.55       117.50         7.69        43.89        60.10         0.26 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
       21.01        53.62        26.76        37.38        46.95        48.30 
TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
       49.94        49.12       122.73        75.25        47.93        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64P 
       39.78        37.45        33.57        72.95        31.63        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        11.24        17.88        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       63.88        46.06        24.59        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 
       54.25        23.21        17.46        13.71        18.61        14.56 
TCGA-DU-5851 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       17.46         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 
       46.06         1.22        87.45        11.64        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7010 
       94.52       114.08         7.96        11.47       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
      105.21         6.54         8.84       117.40        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
       26.30         7.96        94.32        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
       23.31         2.76        14.60        20.68        21.40        16.96 
TCGA-DU-8168 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 
       14.17        29.85        31.69        24.99        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       95.11        20.98        22.29        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        0.56        50.14        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YL 
       95.57        14.30        93.21         3.65        12.43        16.18 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z3 
       75.02        51.88        32.45        36.82       146.14        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       41.33        18.44        15.35        17.88        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A60J 
       32.61        38.27        10.72        18.38        18.71        14.76 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       48.69         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        6.05         0.10        14.96         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
       50.63        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A61C TCGA-HT-A74H 
        0.10         5.33        16.93         1.81        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        45.44 
TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        68.32        69.27        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       42.54        24.92        31.63        28.87        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72W 
        2.30         9.44         5.88         7.96         7.59        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R 
        7.56        12.23        19.20         3.45         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV 
        2.53        12.62        15.85        14.04        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23        13.41         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50        16.70        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        32.65        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        19.59        30.67        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        40.93        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB 
       29.85        32.61        35.15        98.24        95.93       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
        7.92        23.51        19.99         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 
       15.06        18.54        28.37        27.16       169.84        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       30.05        31.59        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       65.39        16.18        59.05        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       33.93        61.41        31.36        45.93        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
        0.10        39.16        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
        8.05        51.06        43.96        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 
       37.71        20.81         7.63        11.77         4.73        18.35 
TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       10.59        20.71        82.59        77.65        20.12        53.10 
TCGA-02-0025 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       42.74        90.58         2.83        14.14         3.62        10.72 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 
        6.87        14.73         3.22        15.09        12.59         2.50 
TCGA-02-0058 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        8.35        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 
       10.19        89.72        22.72        12.62        51.32        57.76 
TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       16.96        27.02        65.00        11.67        17.65        23.18 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0281 TCGA-02-0285 
       99.98        15.65        48.95        16.54         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 TCGA-02-0330 TCGA-02-0332 
       14.20        15.95        12.23         7.73        15.91        25.71 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2485 TCGA-06-0119 
       11.34         9.27        16.21        12.92        15.45         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        6.15        20.38        47.61         6.94         3.98        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       12.95        25.35        14.30        26.70        24.23        11.90 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.20        11.74        20.09        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 TCGA-06-0165 
       46.59        13.94        10.45         3.19        11.80        10.65 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 
        3.29        13.12         4.47         3.22        91.00         4.18 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 
       88.14        20.25        69.90        10.42        38.96         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0238 
        7.66         8.42         7.40         0.53        15.02        13.32 
TCGA-06-0240 TCGA-06-0394 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       20.42        10.82        72.36         9.57         3.16        35.11 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0879 
       14.20        26.40         2.70         0.92        46.19        40.41 
TCGA-06-0881 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       16.57         6.84         4.04        26.79        11.84        15.32 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 
       33.90         1.08         4.93        17.65        30.64         5.95 
TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-6694 TCGA-08-0344 TCGA-08-0345 
        5.98         0.43        31.50         7.36       115.86         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
        8.42        25.71        12.16        65.33         1.28         8.42 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       24.56        31.10        22.29         3.39        12.23        14.93 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 
       13.97        12.56         4.27        58.68        19.33         4.80 
TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0654 
        7.27        18.41         7.56        14.73        12.99         7.59 
TCGA-12-0657 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0769 
        0.10        26.66        12.13         3.65        20.38        15.06 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.85        43.23         7.63         9.73        14.93        14.86 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 
       91.76        24.79        23.51         8.94        20.58         5.82 
TCGA-12-1090 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1099 TCGA-14-0789 
        7.59        15.98        12.23        15.85         4.14        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-1043 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        1.35         5.39         0.79        19.10        13.28         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-1386 TCGA-19-1387 
       26.07        16.37        11.77        21.90         9.07         5.95 
TCGA-19-1388 TCGA-26-5133 TCGA-26-5134 TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 
       12.95        14.86         5.49         1.58         2.33         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5209 TCGA-28-5211 TCGA-28-5215 TCGA-28-5216 
        5.26        14.93        14.53        11.77        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-2616 TCGA-76-6283 
        5.16        22.68        12.76         5.42         7.36         5.42 
TCGA-76-6660 TCGA-81-5910 TCGA-81-5911 
        3.75         1.61        17.72 

  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                         156.23                          211.17 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                          15.32                           16.44 
[1] "0.1 - 156.2 (15.3)" "0.0 - 211.2 (16.4)"
[1] "hr=" "1.8"
D74V2, continuous
D74V3, binary
                                 cls
clus                                0   1
  DEL PEAK 44(22Q13.32) MUTATED   212  77
  DEL PEAK 44(22Q13.32) WILD-TYPE 361 435
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(22Q13.32) MUTATED    212   77
  DEL PEAK 44(22Q13.32) WILD-TYPE  361  435
                        clus
vv                       DEL PEAK 44(22Q13.32) MUTATED
  BRAIN                                            212
  CENTRAL NERVOUS SYSTEM                            77
                        clus
vv                       DEL PEAK 44(22Q13.32) WILD-TYPE
  BRAIN                                              361
  CENTRAL NERVOUS SYSTEM                             435
[1] 2 2
[1] FALSE
D74V4, binary
                                 cls
clus                                0   1
  DEL PEAK 44(22Q13.32) MUTATED   116 173
  DEL PEAK 44(22Q13.32) WILD-TYPE 337 459
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(22Q13.32) MUTATED    116  173
  DEL PEAK 44(22Q13.32) WILD-TYPE  337  459
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  FEMALE                           116                             337
  MALE                             173                             459
[1] 2 2
[1] FALSE
D74V5, binary
                                 cls
clus                                0   1
  DEL PEAK 44(22Q13.32) MUTATED    46 228
  DEL PEAK 44(22Q13.32) WILD-TYPE 212 542
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(22Q13.32) MUTATED     46  228
  DEL PEAK 44(22Q13.32) WILD-TYPE  212  542
     clus
vv    DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  NO                             46                             212
  YES                           228                             542
[1] 2 2
[1] FALSE
D74V6, continuous
                                 vv
clus                              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 44(22Q13.32) MUTATED            43                            10
  DEL PEAK 44(22Q13.32) WILD-TYPE         151                            20
                                 vv
clus                              OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 44(22Q13.32) MUTATED                 16                18
  DEL PEAK 44(22Q13.32) WILD-TYPE              113               171
                                 vv
clus                              TREATED PRIMARY GBM
  DEL PEAK 44(22Q13.32) MUTATED                     6
  DEL PEAK 44(22Q13.32) WILD-TYPE                  12
                                 vv
clus                              UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 44(22Q13.32) MUTATED                               196
  DEL PEAK 44(22Q13.32) WILD-TYPE                             329
D74V7, multiclass
                                 clus
vv                                DEL PEAK 44(22Q13.32) MUTATED
  ASTROCYTOMA                                                43
  GLIOBLASTOMA MULTIFORME (GBM)                              10
  OLIGOASTROCYTOMA                                           16
  OLIGODENDROGLIOMA                                          18
  TREATED PRIMARY GBM                                         6
  UNTREATED PRIMARY (DE NOVO) GBM                           196
                                 clus
vv                                DEL PEAK 44(22Q13.32) WILD-TYPE
  ASTROCYTOMA                                                 151
  GLIOBLASTOMA MULTIFORME (GBM)                                20
  OLIGOASTROCYTOMA                                            113
  OLIGODENDROGLIOMA                                           171
  TREATED PRIMARY GBM                                          12
  UNTREATED PRIMARY (DE NOVO) GBM                             329
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 44(22Q13.32) MUTATED                                  1     6
  DEL PEAK 44(22Q13.32) WILD-TYPE                                0    15
                                 vv
clus                              BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 44(22Q13.32) MUTATED                          15   258
  DEL PEAK 44(22Q13.32) WILD-TYPE                        56   701
D74V8, multiclass
                                  clus
vv                                 DEL PEAK 44(22Q13.32) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                        6
  BLACK OR AFRICAN AMERICAN                                   15
  WHITE                                                      258
                                  clus
vv                                 DEL PEAK 44(22Q13.32) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                               0
  ASIAN                                                         15
  BLACK OR AFRICAN AMERICAN                                     56
  WHITE                                                        701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V9, binary
                                 cls
clus                                0   1
  DEL PEAK 44(22Q13.32) MUTATED     7 247
  DEL PEAK 44(22Q13.32) WILD-TYPE  37 674
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(22Q13.32) MUTATED      7  247
  DEL PEAK 44(22Q13.32) WILD-TYPE   37  674
                        clus
vv                       DEL PEAK 44(22Q13.32) MUTATED
  HISPANIC OR LATINO                                 7
  NOT HISPANIC OR LATINO                           247
                        clus
vv                       DEL PEAK 44(22Q13.32) WILD-TYPE
  HISPANIC OR LATINO                                  37
  NOT HISPANIC OR LATINO                             674
[1] 2 2
[1] FALSE

Clustering(75) Variable = DEL PEAK 45(XQ21.1) MUTATION ANALYSIS
D75V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 45(XQ21.1) MUTATED    74 107
  DEL PEAK 45(XQ21.1) WILD-TYPE 406 491
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                          181                           897 
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                          107                           491 
$`DEL PEAK 45(XQ21.1) MUTATED`
TCGA-CS-6665 TCGA-06-5408 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 
       51.55        11.74         6.71         2.73         3.75         4.57 
TCGA-06-A5U0 TCGA-06-A5U1 TCGA-06-A6S1 TCGA-12-0615 TCGA-12-3644 TCGA-12-3646 
       26.79         1.87         2.56        15.35        59.77        44.02 
TCGA-12-3652 TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 
       34.92        14.93        15.12        11.97         2.89        16.50 
TCGA-14-3477 TCGA-16-1045 TCGA-16-1063 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 
        3.78        29.03        13.97         3.39        25.38         3.65 
TCGA-19-1786 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 
        7.17         9.67         1.08         7.53         4.08        24.23 
TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 TCGA-26-1439 TCGA-27-2524 TCGA-28-1750 
        6.64        22.49        14.96        13.87         7.59         8.35 
TCGA-28-1756 TCGA-32-1977 TCGA-32-1978 TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 
        2.83         0.10        15.85        20.78        15.95        22.78 
TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 
       21.14        19.86        10.85        13.35         9.53         0.99 
TCGA-4W-AA9R TCGA-74-6573 TCGA-74-6575 TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 
        4.08         3.45        20.91         4.80         3.65         9.17 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6285 TCGA-76-6286 TCGA-OX-A56R TCGA-CS-6667 
        2.53        36.85         8.35        20.98         5.92        48.30 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5279 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64W 
       47.93        50.86        44.52        33.57        31.63        14.40 
TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-6404 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7008 
       19.96        18.02       133.74         7.96        11.47       156.23 
TCGA-DU-7010 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-8158 TCGA-DU-8168 TCGA-DU-A6S8 
       14.99        30.67        94.32         5.10        14.17        22.29 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-E1-5302 TCGA-E1-5311 TCGA-E1-A7YE TCGA-E1-A7YK 
       21.30        17.98        50.14       134.27        29.13        12.43 
TCGA-E1-A7YS TCGA-E1-A7YV TCGA-E1-A7Z4 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5964 
       15.32        32.45       145.05        39.48         0.23        52.21 
TCGA-FG-A6IZ TCGA-FG-A6J3 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7616 TCGA-HT-7688 
       15.02        22.26        11.54         0.13         0.23        31.69 
TCGA-HT-7690 TCGA-HT-7692 TCGA-HT-A61B TCGA-HW-7491 TCGA-HW-8321 TCGA-IK-7675 
        0.10         2.96        17.52        68.32        42.54        19.00 
TCGA-KT-A74X TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72Z TCGA-P5-A737 TCGA-P5-A77W 
       14.40         7.96         1.28        11.64        12.23        19.20 
TCGA-P5-A780 TCGA-QH-A65Z TCGA-QH-A6CX TCGA-QH-A6X4 TCGA-QH-A6X8 TCGA-QH-A6X9 
        2.37        14.04        12.23        14.53        16.73         1.91 
TCGA-RY-A83Z TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6WP TCGA-S9-A7IS TCGA-S9-A7QW 
        9.90        87.12        18.77        18.64         7.92        15.06 
TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84I TCGA-TQ-A7RF TCGA-TQ-A7RM 
       20.48        49.32        65.39        28.08        21.37        36.69 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8CD TCGA-VM-A8CF 
       61.41        26.99        31.36        45.93         7.89        20.02 
TCGA-VV-A829 TCGA-WH-A86K TCGA-WY-A859 TCGA-02-0007 TCGA-02-0011 TCGA-02-0026 
       37.05        13.32        39.88        23.18        20.71        24.59 
TCGA-02-0039 TCGA-02-0048 TCGA-02-0099 TCGA-02-0330 TCGA-02-0339 TCGA-02-2466 
       10.52         3.22         3.48        15.91        12.39        16.80 
TCGA-06-0129 TCGA-06-0138 TCGA-06-0152 TCGA-06-0166 TCGA-06-0171 TCGA-06-0184 
       33.67        24.23        12.33         5.85        13.12        69.90 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0214 TCGA-06-0219 TCGA-06-0646 TCGA-06-1800 
       73.84        27.22        15.02         0.72         5.75        26.79 
TCGA-06-2558 TCGA-06-2570 TCGA-06-6693 TCGA-08-0245 TCGA-08-0344 TCGA-08-0348 
       12.49        31.50       120.56        37.84       115.86        12.16 
TCGA-08-0354 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 
       17.95        15.35         0.72        42.15        58.68        10.75 
TCGA-08-0525 TCGA-12-0821 TCGA-12-0827 TCGA-12-1091 TCGA-14-0787 TCGA-15-0742 
       15.98        10.62        38.76        33.21         2.24        13.78 
TCGA-15-1447 TCGA-26-5133 TCGA-26-5134 TCGA-28-2514 TCGA-28-5204 TCGA-28-5220 
       53.19        14.86         5.49         5.26        14.93        12.76 
TCGA-76-6660 
        3.75 

$`DEL PEAK 45(XQ21.1) WILD-TYPE`
TCGA-06-6391 TCGA-19-A6J4 TCGA-CS-6670 TCGA-DB-A4XC TCGA-DH-5141 TCGA-DH-A66B 
        1.48         3.98        46.88        46.72        31.82        42.05 
TCGA-DU-7300 TCGA-DU-A76O TCGA-E1-A7YN TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A713 
       62.01        17.16        23.90        20.09        17.82        20.45 
TCGA-FG-A87N TCGA-HT-A619 TCGA-HW-7490 TCGA-IK-8125 TCGA-R8-A73M TCGA-06-1806 
       18.64        21.40        45.60        42.77        59.38        15.32 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        6.15         5.23         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-06-A6S0 TCGA-06-A7TK TCGA-06-A7TL TCGA-12-1092 
        4.77         4.96         3.12        14.60        17.72        21.73 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 
       15.65        25.68        14.73         6.77        26.93        15.22 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 
       10.95        12.69        14.53         3.22         2.04         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 TCGA-14-1034 
        6.21        23.05        13.78         3.25        26.33        15.95 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.05        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.18         0.92        40.96         6.67 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.97        17.79        17.85         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-16-0848 
        5.88         7.17        17.49         7.96         3.42        17.59 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 
        4.57        10.29        14.01         9.14        21.24         6.41 
TCGA-19-0960 TCGA-19-0963 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 
        8.61        14.27        12.66         3.25         0.13         4.87 
TCGA-19-2624 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        0.16         7.00         7.04        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-A60I 
        4.73        12.10         1.78        14.07        16.80        17.79 
TCGA-19-A6J5 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       28.54        10.03         9.73         7.13         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-A7UX TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        8.88        18.97        19.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       24.76        18.08        16.77        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.78         0.20         2.53         9.21         7.63         8.48 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.22         1.55         0.13         0.66         6.74         4.77 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       15.39        21.07         0.49        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2632 
       12.69        14.86        16.93        12.23        15.02         8.84 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
       25.18         3.72        12.59        19.23         0.85         8.94 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-4W-AA9S 
        4.44        11.84         0.20        15.12        12.46         1.45 
TCGA-4W-AA9T TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 
       25.58         4.34        14.33         8.22         7.50         4.54 
TCGA-76-4928 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6656 
        3.09        16.70         3.29         2.70        17.06         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-RR-A6KA 
        5.03        23.90        34.45        18.64        36.20         6.28 
TCGA-RR-A6KC TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       20.55       117.50         7.69        43.89        36.36        60.10 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.26        21.01        53.62         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6668 TCGA-CS-6669 TCGA-DB-5270 
       26.76        37.38        46.95        49.94        49.12       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5280 TCGA-DB-5281 
       81.96        75.25        72.92        91.13        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XG 
       46.42        18.84        30.21        39.78        37.45        72.95 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       27.81        29.23        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       30.74        16.18        63.88        46.06        24.59        30.21 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       13.71        18.61        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 
       65.75         1.22        87.45         7.04        11.64        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7009 
       16.83        94.52       114.08         2.40        62.96       154.36 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 
      105.21         6.54         8.84       117.40        90.77        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
       10.36         7.96        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       23.31        41.98         2.76        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        16.96        15.48        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A7T8 
       21.57        95.11        20.98        11.41        26.76       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TI 
       84.33        51.52        37.38         7.50        44.42        38.89 
TCGA-DU-A7TJ TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 
        0.56        67.46        41.13        79.99        57.93        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       95.57       130.78        14.30        93.21         3.65        19.46 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YU TCGA-E1-A7YW 
       16.18        21.30        75.02        51.88         0.76        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5962 
      146.14        13.08        73.48        32.35         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       25.48        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J1 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       14.76        21.53        16.44        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 
       48.69         5.72        27.52         0.10         6.67        40.11 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7694 
       42.74         0.10        14.96         0.10        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        34.19        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       16.83        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 
        0.10        56.58        45.44        41.49        69.27        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       39.75        40.01        24.92        31.63        12.76        28.87 
TCGA-HW-A5KM TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       20.71        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W 
        2.30         9.44         5.88         7.59         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       13.25        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        3.45         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        14.53        13.61        13.41         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X5 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       10.29        16.34        16.50        16.70        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 
       88.83        94.03        32.65        30.87         5.46        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TW TCGA-S9-A6TX 
        2.07        19.59        30.67        62.17        41.10        40.93 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IY 
       26.47        18.61        14.07        36.13        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QX 
       19.99        20.02         8.19         2.04        20.68        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA 
       98.63        31.59        18.71        54.77        48.33        34.78 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J 
       24.92        16.18        59.05        40.64        30.44        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A86M 
       43.20        13.51         0.10        39.16        23.47        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B 
       23.21         8.05        51.06        43.96        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E TCGA-06-0209 TCGA-02-0001 TCGA-02-0003 
       46.88        37.71        20.81         7.63        11.77         4.73 
TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 
       18.35        10.59        35.41        82.59        20.61        87.06 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 
       77.65        20.12        53.10        42.74        12.16        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
        2.83        14.14         3.62        10.72        18.31         6.87 
TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.73        15.09        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.25        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72        12.62        51.32         8.81        57.76        16.96 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       27.02        65.00        11.67        17.65        23.18        92.65 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.98        15.65        48.95        16.54        16.93        17.72 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 
       12.23         9.90         7.73        10.62         7.33        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
        4.37        25.12        10.59        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 
       11.34         9.27        16.21         3.35        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.45        20.32         2.70         6.15        20.38        47.61 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        6.94         3.98        22.72        12.95        25.35        14.30 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       26.70        11.90         0.20        10.29         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        17.79        10.09         8.61        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        13.94        10.45         3.19        10.82         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         3.42        56.91        10.65        19.66         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        4.47         3.22         4.04        91.00         4.18        88.14 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       20.25         3.65        44.58        15.42        10.42        38.96 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.40         5.56         0.39         7.66         8.42 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 
        7.40        11.84         0.53        24.16        19.82        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       13.32        20.42        48.69        10.82         9.01         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       72.36         4.70         9.57         3.16        35.11        12.62 
TCGA-06-0645 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       23.93         6.84         4.04        11.84        15.32        13.61 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90         1.08         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-6389 
        5.95        16.64         5.98         4.37         0.43         7.79 
TCGA-06-6390 TCGA-06-6694 TCGA-08-0244 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
        5.39         7.36        22.68         4.18         1.74         8.42 
TCGA-08-0347 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       25.71         9.80        29.23        65.33         1.28         8.42 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       24.56        31.10        37.58        22.29         3.39        12.23 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       14.93        18.02        13.97        12.56         4.27        11.08 
TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 
       19.59        19.33         4.80         7.27        18.41         7.56 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.73        12.99        34.92        10.45         7.59        94.78 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        26.66        12.13         3.65 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       20.38        28.41        15.06        53.85        43.23         7.63 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.73        14.93        14.86        91.76        24.79        18.48 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78         8.94        20.58       127.59         5.82 
TCGA-12-1090 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
        7.59        15.98        12.23        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 
        3.98         4.14        11.24         1.35         5.39         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 
       28.93        19.30         0.79        50.53        19.10        13.28 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
        3.91        26.07        16.37        11.77        21.90         0.66 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-26-1442 
       10.75         9.07         5.95        12.95         4.64        31.33 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        1.58         7.92         2.33         7.30        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-2616 TCGA-76-6280 TCGA-76-6283 
        5.16        22.68         5.42         7.36        11.38         5.42 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                       156.23                        211.17 
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                        15.12                         16.18 
[1] "0.1 - 156.2 (15.1)" "0.0 - 211.2 (16.2)"
[1] "hr=" "1.1"
D75V2, continuous
D75V3, binary
                               cls
clus                              0   1
  DEL PEAK 45(XQ21.1) MUTATED   105  78
  DEL PEAK 45(XQ21.1) WILD-TYPE 468 434
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XQ21.1) MUTATED    105   78
  DEL PEAK 45(XQ21.1) WILD-TYPE  468  434
                        clus
vv                       DEL PEAK 45(XQ21.1) MUTATED
  BRAIN                                          105
  CENTRAL NERVOUS SYSTEM                          78
                        clus
vv                       DEL PEAK 45(XQ21.1) WILD-TYPE
  BRAIN                                            468
  CENTRAL NERVOUS SYSTEM                           434
[1] 2 2
[1] FALSE
D75V4, binary
                               cls
clus                              0   1
  DEL PEAK 45(XQ21.1) MUTATED    79 104
  DEL PEAK 45(XQ21.1) WILD-TYPE 374 528
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XQ21.1) MUTATED     79  104
  DEL PEAK 45(XQ21.1) WILD-TYPE  374  528
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  FEMALE                          79                           374
  MALE                           104                           528
[1] 2 2
[1] FALSE
D75V5, binary
                               cls
clus                              0   1
  DEL PEAK 45(XQ21.1) MUTATED    40 133
  DEL PEAK 45(XQ21.1) WILD-TYPE 218 637
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XQ21.1) MUTATED     40  133
  DEL PEAK 45(XQ21.1) WILD-TYPE  218  637
     clus
vv    DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  NO                           40                           218
  YES                         133                           637
[1] 2 2
[1] FALSE
D75V6, continuous
                               vv
clus                            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM)
  DEL PEAK 45(XQ21.1) MUTATED            31                             6
  DEL PEAK 45(XQ21.1) WILD-TYPE         163                            24
                               vv
clus                            OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  DEL PEAK 45(XQ21.1) MUTATED                 16                31
  DEL PEAK 45(XQ21.1) WILD-TYPE              113               158
                               vv
clus                            TREATED PRIMARY GBM
  DEL PEAK 45(XQ21.1) MUTATED                     2
  DEL PEAK 45(XQ21.1) WILD-TYPE                  16
                               vv
clus                            UNTREATED PRIMARY (DE NOVO) GBM
  DEL PEAK 45(XQ21.1) MUTATED                                97
  DEL PEAK 45(XQ21.1) WILD-TYPE                             428
D75V7, multiclass
                                 clus
vv                                DEL PEAK 45(XQ21.1) MUTATED
  ASTROCYTOMA                                              31
  GLIOBLASTOMA MULTIFORME (GBM)                             6
  OLIGOASTROCYTOMA                                         16
  OLIGODENDROGLIOMA                                        31
  TREATED PRIMARY GBM                                       2
  UNTREATED PRIMARY (DE NOVO) GBM                          97
                                 clus
vv                                DEL PEAK 45(XQ21.1) WILD-TYPE
  ASTROCYTOMA                                               163
  GLIOBLASTOMA MULTIFORME (GBM)                              24
  OLIGOASTROCYTOMA                                          113
  OLIGODENDROGLIOMA                                         158
  TREATED PRIMARY GBM                                        16
  UNTREATED PRIMARY (DE NOVO) GBM                           428
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DEL PEAK 45(XQ21.1) MUTATED                                  0     5
  DEL PEAK 45(XQ21.1) WILD-TYPE                                1    16
                               vv
clus                            BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 45(XQ21.1) MUTATED                          12   160
  DEL PEAK 45(XQ21.1) WILD-TYPE                        59   799
D75V8, multiclass
                                  clus
vv                                 DEL PEAK 45(XQ21.1) MUTATED
  AMERICAN INDIAN OR ALASKA NATIVE                           0
  ASIAN                                                      5
  BLACK OR AFRICAN AMERICAN                                 12
  WHITE                                                    160
                                  clus
vv                                 DEL PEAK 45(XQ21.1) WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                             1
  ASIAN                                                       16
  BLACK OR AFRICAN AMERICAN                                   59
  WHITE                                                      799
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V9, binary
                               cls
clus                              0   1
  DEL PEAK 45(XQ21.1) MUTATED     7 155
  DEL PEAK 45(XQ21.1) WILD-TYPE  37 766
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XQ21.1) MUTATED      7  155
  DEL PEAK 45(XQ21.1) WILD-TYPE   37  766
                        clus
vv                       DEL PEAK 45(XQ21.1) MUTATED
  HISPANIC OR LATINO                               7
  NOT HISPANIC OR LATINO                         155
                        clus
vv                       DEL PEAK 45(XQ21.1) WILD-TYPE
  HISPANIC OR LATINO                                37
  NOT HISPANIC OR LATINO                           766
[1] 2 2
[1] FALSE
