		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2q11.2	107 (20%)	415	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.04159	0.0821	0.54304	0.642	0.085019	0.149	9.9999e-06	4.94e-05	0.00064999	0.00215	0.00067999	0.00223	0.70079	0.771	0.73594	0.792
amp_2q31.2	112 (21%)	410	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.16347	0.259	0.31186	0.423	0.04124	0.0816	9.9999e-06	4.94e-05	0.00442	0.0118	0.0066699	0.0168	0.25653	0.358	0.55725	0.654
amp_3q26.33	380 (73%)	142	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.080939	0.144	0.30871	0.422	9.9999e-06	4.94e-05	0.00023	0.000821	0.00056999	0.00191	0.59359	0.685	0.20011	0.302	0.22708	0.33
amp_5p15.33	240 (46%)	282	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.51667	0.617	0.82962	0.868	0.0050599	0.0133	0.68681	0.764	0.69469	0.769	0.03374	0.0689	0.57261	0.665	0.63602	0.725
amp_5p12	205 (39%)	317	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.17891	0.276	0.14645	0.238	0.050209	0.0959	0.23416	0.338	0.4361	0.548	0.01619	0.0367	0.69815	0.77	0.71288	0.778
amp_6p12.1	110 (21%)	412	9.9999e-06	4.94e-05	2e-05	8.94e-05	0.49931	0.6	0.95059	0.957	0.11168	0.189	0.03722	0.0756	0.56207	0.658	0.0023	0.00675	0.40234	0.512	0.2368	0.339
amp_6q12	96 (18%)	426	9.9999e-06	4.94e-05	7.9999e-05	0.000315	0.68945	0.766	0.8999	0.919	0.089049	0.155	0.0061199	0.0156	0.18278	0.281	0.23439	0.338	0.84184	0.876	0.54712	0.645
amp_7p11.2	222 (43%)	300	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.85443	0.887	0.6714	0.754	0.02382	0.0513	9.9999e-06	4.94e-05	0.00022	0.000789	9.9999e-06	4.94e-05	0.22617	0.329	0.21871	0.323
amp_7q21.3	169 (32%)	353	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.76541	0.818	0.44217	0.552	0.01281	0.0297	9.9999e-06	4.94e-05	0.082749	0.147	0.00015	0.000562	0.24198	0.343	0.93517	0.945
amp_8p11.23	161 (31%)	361	9.9999e-06	4.94e-05	0.03855	0.0774	0.94865	0.957	0.87389	0.899	0.24132	0.343	0.16954	0.266	0.066429	0.123	0.01092	0.0258	0.40438	0.514	0.04529	0.0883
amp_8q11.21	310 (59%)	212	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.02241	0.0489	0.63451	0.724	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.00222	0.00656	0.0052199	0.0136	0.093399	0.161	0.00434	0.0117
amp_8q24.21	386 (74%)	136	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.0059899	0.0153	0.4474	0.555	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.00109	0.00345	0.00268	0.00766	0.00089999	0.00286
amp_9p24.1	126 (24%)	396	9.9999e-06	4.94e-05	2e-05	8.94e-05	0.13441	0.22	0.25119	0.352	0.00074999	0.00243	0.01429	0.0326	0.00385	0.0105	0.00129	0.004	0.26299	0.364	0.32579	0.438
amp_9p23	124 (24%)	398	9.9999e-06	4.94e-05	0.00014	0.000527	0.38698	0.496	0.42478	0.536	0.00136	0.0042	0.01946	0.0435	0.00163	0.00492	0.00218	0.00647	0.33135	0.442	0.53353	0.634
amp_9p13.3	139 (27%)	383	9.9999e-06	4.94e-05	0.00389	0.0106	0.2473	0.348	0.12217	0.203	0.00027	0.000954	0.00144	0.0044	0.22626	0.329	0.059529	0.111	0.75824	0.812	0.4543	0.561
amp_9q34.3	177 (34%)	345	9.9999e-06	4.94e-05	0.00012	0.000456	0.65218	0.738	0.02368	0.0511	0.37974	0.492	0.00446	0.0118	0.22528	0.329	0.086219	0.151	0.96022	0.965	0.96824	0.972
amp_11p13	102 (20%)	420	0.00223	0.00657	0.00049	0.00166	0.17301	0.269	0.17675	0.274	0.083919	0.148	0.56542	0.661	0.63193	0.722	0.49246	0.593	0.90479	0.922	0.04218	0.083
amp_11q13.3	229 (44%)	293	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.79671	0.841	0.73273	0.79	9.9999e-06	4.94e-05	0.03181	0.0655	0.0301	0.0626	0.0046	0.0121	0.38106	0.492	0.2008	0.303
amp_12p13.33	167 (32%)	355	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.25052	0.352	0.52351	0.624	0.00177	0.0053	8.9999e-05	0.000349	0.02595	0.0552	0.087489	0.152	0.67224	0.754	0.77106	0.822
amp_12q15	103 (20%)	419	2e-05	8.94e-05	6.9999e-05	0.000277	0.30273	0.415	0.20515	0.309	0.10244	0.175	0.00167	0.00502	0.87981	0.904	0.32227	0.434	0.3965	0.506	0.73655	0.792
amp_13q22.1	105 (20%)	417	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.38443	0.494	0.15669	0.251	0.64968	0.737	0.076439	0.139	0.33202	0.442	0.16216	0.258	0.46077	0.565	0.61942	0.712
amp_13q34	106 (20%)	416	9.9999e-06	4.94e-05	0.00047	0.00159	0.779	0.828	0.49175	0.593	0.24358	0.344	0.00402	0.0109	0.12396	0.205	0.1327	0.217	0.46583	0.568	0.31047	0.423
amp_15q26.3	105 (20%)	417	3e-05	0.000129	0.00443	0.0118	0.69916	0.77	0.32747	0.439	0.22448	0.329	0.075659	0.138	0.54862	0.645	0.050979	0.0969	0.52871	0.629	0.079409	0.143
amp_17q12	91 (17%)	431	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.69776	0.77	0.72177	0.787	0.00255	0.00737	3e-05	0.000129	0.02066	0.0458	4e-05	0.000168	0.70482	0.773	0.22393	0.329
amp_18p11.31	156 (30%)	366	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.21122	0.316	0.51637	0.617	0.0094599	0.0228	9.9999e-06	4.94e-05	0.01064	0.0253	2e-04	0.000724	0.94975	0.957	0.22211	0.327
amp_18q11.2	106 (20%)	416	2e-05	8.94e-05	0.00033	0.00116	0.77332	0.823	0.20733	0.311	0.10725	0.182	0.01261	0.0293	0.0079899	0.0196	0.02871	0.0603	0.79831	0.841	0.6806	0.76
amp_20q11.22	227 (43%)	295	9.9999e-06	4.94e-05	3e-05	0.000129	0.04875	0.0938	0.832	0.87	0.058689	0.11	0.0287	0.0603	0.91026	0.924	0.02359	0.0511	0.57902	0.672	0.01728	0.039
amp_xq28	150 (29%)	372	9.9999e-06	4.94e-05	9.9999e-05	0.000382	0.74485	0.8	0.19638	0.297	0.25698	0.358	0.31545	0.427	0.56765	0.662	0.094609	0.163	0.69385	0.769	0.60541	0.697
del_1p36.21	95 (18%)	427	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.02097	0.0463	0.0057799	0.015	6.9999e-05	0.000277	9.9999e-06	4.94e-05	0.0070899	0.0176	0.04046	0.0807	0.00355	0.00992	0.0068099	0.017
del_1p13.2	133 (25%)	389	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.0108	0.0256	0.0071199	0.0176	0.15612	0.251	2e-05	8.94e-05	0.00080999	0.0026	9.9999e-05	0.000382	0.076929	0.14	0.62835	0.72
del_1q44	48 (9%)	474	8.9999e-05	0.000349	0.01197	0.0281	0.79993	0.842	0.90962	0.924	0.0085299	0.0207	0.01019	0.0244	0.00037	0.00128	0.04593	0.0891	0.24209	0.343	0.48596	0.587
del_2q21.2	78 (15%)	444	0.04953	0.0949	0.055109	0.104	0.5037	0.605	0.2125	0.317	0.0062999	0.016	2e-04	0.000724	0.03862	0.0774	0.25863	0.36	0.31097	0.423	0.1708	0.267
del_2q22.1	121 (23%)	401	0.00468	0.0123	9.9999e-05	0.000382	0.38745	0.496	0.83742	0.873	0.12307	0.204	0.0097199	0.0233	0.081059	0.144	0.00139	0.00428	0.88965	0.912	0.57154	0.665
del_2q36.2	157 (30%)	365	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.18613	0.285	0.85947	0.89	0.0087999	0.0213	0.065909	0.122	0.069589	0.128	0.02482	0.053	0.10281	0.176	0.090079	0.156
del_3p26.2	348 (67%)	174	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.17848	0.276	0.21096	0.316	5e-05	0.000203	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.053379	0.101	0.01981	0.0442
del_3p24.1	368 (70%)	154	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.22353	0.329	0.11279	0.19	0.00126	0.00394	9.9999e-06	4.94e-05	5.9999e-05	0.000241	5e-05	0.000203	0.01425	0.0326	0.11075	0.188
del_3p14.2	372 (71%)	150	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.35921	0.471	0.17542	0.272	0.0057899	0.015	9.9999e-06	4.94e-05	0.00144	0.0044	0.00041	0.00141	0.03187	0.0655	0.21445	0.318
del_3p12.1	343 (66%)	179	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.6691	0.753	0.90232	0.92	0.00161	0.00487	9.9999e-06	4.94e-05	0.00014	0.000527	0.00047	0.00159	0.080789	0.144	0.48184	0.585
del_4p16.3	205 (39%)	317	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.19553	0.297	0.40812	0.518	0.00246	0.00716	9.9999e-06	4.94e-05	0.064139	0.119	0.069459	0.128	0.0081399	0.0199	0.04124	0.0816
del_4p15.2	208 (40%)	314	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.02482	0.053	0.33589	0.446	0.0056899	0.0148	9.9999e-06	4.94e-05	0.0064599	0.0163	0.03017	0.0626	0.00111	0.00349	0.00296	0.00839
del_4q21.3	156 (30%)	366	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.73186	0.79	0.04648	0.0899	0.1461	0.238	2e-05	8.94e-05	0.25909	0.36	0.03149	0.065	0.44301	0.552	0.02964	0.0619
del_4q22.1	169 (32%)	353	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.47742	0.581	0.074499	0.136	0.12006	0.201	0.00024	0.000852	0.44336	0.552	0.03998	0.08	0.44613	0.554	0.087069	0.152
del_4q35.2	213 (41%)	309	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.87081	0.897	0.18602	0.285	0.080659	0.144	0.00017	0.000633	0.23538	0.339	0.0060099	0.0153	0.14668	0.238	0.16422	0.26
del_5q12.1	215 (41%)	307	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.00419	0.0113	0.36127	0.471	0.073549	0.135	9.9999e-06	4.94e-05	0.00264	0.0076	3e-05	0.000129	0.35137	0.461	0.52257	0.623
del_5q15	226 (43%)	296	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.01881	0.0422	0.43138	0.544	0.31128	0.423	9.9999e-06	4.94e-05	0.01211	0.0283	2e-05	8.94e-05	0.65147	0.738	0.78016	0.828
del_5q35.3	199 (38%)	323	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.12091	0.202	0.72262	0.787	0.0070199	0.0174	9.9999e-06	4.94e-05	0.03774	0.0763	4e-05	0.000168	0.36065	0.471	0.22916	0.332
del_6p25.3	96 (18%)	426	0.0058199	0.015	9.9999e-06	4.94e-05	0.29788	0.409	0.01068	0.0254	0.0036	0.00999	0.17242	0.269	0.0373	0.0756	0.72553	0.789	0.681	0.76	0.67209	0.754
del_7q31.1	77 (15%)	445	0.00018	0.000667	0.3419	0.452	0.72985	0.79	0.38057	0.492	0.00364	0.0101	0.54847	0.645	0.00217	0.00647	0.17569	0.272	0.18672	0.285	0.39764	0.507
del_7q36.1	132 (25%)	390	2e-05	8.94e-05	0.32675	0.439	0.31418	0.426	0.67377	0.754	0.04289	0.084	0.80524	0.846	0.0071799	0.0177	0.33132	0.442	0.51662	0.617	0.29042	0.399
del_8p23.2	305 (58%)	217	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.12222	0.203	0.32171	0.434	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.00316	0.00889	0.02647	0.0562	5e-05	0.000203
del_9p23	239 (46%)	283	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.12429	0.205	0.11334	0.191	0.00051999	0.00175	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	8.9999e-05	0.000349	0.48475	0.587	0.97871	0.98
del_9p21.3	302 (58%)	220	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.15151	0.244	0.36077	0.471	4e-05	0.000168	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.27663	0.382	0.03644	0.0742
del_9q21.11	108 (21%)	414	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.70289	0.772	0.23736	0.339	0.074499	0.136	0.02284	0.0497	0.00234	0.00684	0.00060999	0.00203	0.4442	0.553	0.12188	0.203
del_9q34.3	79 (15%)	443	9.9999e-06	4.94e-05	2e-04	0.000724	0.8283	0.868	0.3693	0.48	0.43419	0.546	0.44223	0.552	0.78816	0.834	0.0095799	0.023	0.45245	0.56	0.25952	0.36
del_10p15.3	170 (33%)	352	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.75725	0.812	0.70868	0.776	0.00079999	0.00258	0.003	0.00848	0.00021	0.000756	0.080279	0.144	0.02764	0.0585	0.68628	0.764
del_10p11.21	163 (31%)	359	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.54914	0.645	0.21982	0.324	5.9999e-05	0.000241	0.02214	0.0485	2e-05	8.94e-05	0.01111	0.0261	0.03859	0.0774	0.86044	0.89
del_10q23.31	138 (26%)	384	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.23738	0.339	0.97987	0.98	0.00047	0.00159	0.00281	0.008	0.00035	0.00122	0.46207	0.565	0.32969	0.441	0.45581	0.561
del_11p15.5	163 (31%)	359	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.7688	0.821	0.2821	0.388	0.00083999	0.00268	0.01375	0.0317	2e-05	8.94e-05	0.0038	0.0104	0.33555	0.446	0.01417	0.0325
del_11q23.1	246 (47%)	276	2e-05	8.94e-05	9.9999e-06	4.94e-05	0.34261	0.452	0.16571	0.261	2e-05	8.94e-05	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.01318	0.0304	0.04459	0.0871	0.15968	0.255
del_12q24.33	63 (12%)	459	9.9999e-06	4.94e-05	2e-04	0.000724	0.84345	0.877	0.45568	0.561	0.3503	0.461	0.1045	0.178	0.35146	0.461	0.12096	0.202	0.43823	0.55	0.73245	0.79
del_13q12.11	233 (45%)	289	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.16174	0.258	0.24035	0.342	0.078719	0.142	2e-05	8.94e-05	0.01993	0.0443	0.03082	0.0638	0.62951	0.721	0.83749	0.873
del_13q14.2	217 (42%)	305	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.21416	0.318	0.56637	0.661	3e-05	0.000129	6.9999e-05	0.000277	0.0011	0.00347	0.21623	0.32	0.91037	0.924	0.02142	0.0472
del_14q11.2	75 (14%)	447	0.00365	0.0101	0.0067199	0.0169	0.17053	0.267	0.89829	0.919	0.24057	0.342	0.14941	0.242	0.00447	0.0118	0.03259	0.0668	0.38725	0.496	0.65388	0.738
del_14q32.32	75 (14%)	447	0.00129	0.004	9.9999e-06	4.94e-05	0.053489	0.101	0.46587	0.568	2e-05	8.94e-05	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.0289	0.0605	0.38187	0.492	0.11151	0.189
del_15q15.1	124 (24%)	398	9.9999e-06	4.94e-05	0.050399	0.096	0.64976	0.737	0.4143	0.525	0.02481	0.053	0.063539	0.119	0.73042	0.79	0.63965	0.728	0.48177	0.585	0.93292	0.944
del_16q23.1	98 (19%)	424	0.00037	0.00128	9.9999e-06	4.94e-05	0.78855	0.834	0.45531	0.561	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.04083	0.0812	0.27328	0.378	0.00064999	0.00215
del_16q23.3	105 (20%)	417	0.00065999	0.00217	9.9999e-06	4.94e-05	0.42047	0.532	0.23306	0.337	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	5e-05	0.000203	0.16522	0.261	0.37935	0.492	0.02181	0.0479
del_17p11.2	99 (19%)	423	9.9999e-06	4.94e-05	0.00147	0.00447	0.85813	0.89	0.97319	0.976	0.19324	0.294	0.10013	0.172	0.1403	0.229	0.12564	0.207	0.86686	0.894	0.93273	0.944
del_17q25.3	71 (14%)	451	0.01442	0.0328	2e-05	8.94e-05	0.10014	0.172	0.6905	0.766	0.00266	0.00763	0.083119	0.147	0.00357	0.00994	0.04958	0.0949	0.02804	0.0592	0.0059699	0.0153
del_18q23	288 (55%)	234	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.18124	0.279	0.2461	0.347	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	2e-05	8.94e-05	9.9999e-06	4.94e-05	0.082389	0.146	0.01689	0.0382
del_19p13.3	175 (34%)	347	9.9999e-06	4.94e-05	3e-05	0.000129	0.54224	0.642	0.36574	0.476	0.00072999	0.00237	0.00068999	0.00225	0.04665	0.09	2e-04	0.000724	0.53588	0.635	0.2523	0.353
del_19q13.43	97 (19%)	425	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.21359	0.318	0.5872	0.678	0.33819	0.448	5e-05	0.000203	0.04271	0.0839	0.065809	0.122	0.16545	0.261	0.57993	0.672
del_21q22.3	208 (40%)	314	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.65562	0.739	0.72672	0.789	0.04594	0.0891	9.9999e-06	4.94e-05	0.00028	0.000985	5e-05	0.000203	0.084219	0.148	0.18954	0.289
del_xp22.2	157 (30%)	365	9.9999e-06	4.94e-05	9.9999e-06	4.94e-05	0.62173	0.714	0.00247	0.00716	0.4836	0.586	0.01735	0.039	0.0085199	0.0207	0.15804	0.253	0.86656	0.894	0.89149	0.913
del_xp21.3	159 (30%)	363	9.9999e-06	4.94e-05	4e-05	0.000168	0.78669	0.834	0.055239	0.104	0.80992	0.85	0.02326	0.0505	0.15209	0.245	0.084839	0.149	0.71194	0.778	0.45712	0.561
del_xq21.33	80 (15%)	442	3e-05	0.000129	9.9999e-06	4.94e-05	0.5852	0.677	0.12815	0.21	0.00345	0.00968	0.00383	0.0105	0.0068299	0.017	0.01235	0.0288	0.23646	0.339	0.077759	0.141
