[1] "ofn"        "-oTHNSC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/22541004/HNSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/22815321/transformed.cor.cli.txt"

nPatients in clinical file=528, in cluster file=511, common to both=511
[1]  62 511
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           364            147 
  TP53 MUTATED TP53 WILD-TYPE 
           364            147 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
             112              399 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
             112              399 
[1] "NSD1 MUTATION ANALYSIS"
[1] 3
  NSD1 MUTATED NSD1 WILD-TYPE 
            62            449 
  NSD1 MUTATED NSD1 WILD-TYPE 
            62            449 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             54             457 
  CASP8 MUTATED CASP8 WILD-TYPE 
             54             457 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            81            430 
  MLL2 MUTATED MLL2 WILD-TYPE 
            81            430 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              24              487 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              24              487 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
             24             487 
  HLA-B MUTATED HLA-B WILD-TYPE 
             24             487 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             33             478 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             33             478 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              90              421 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              90              421 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
           112            399 
  FAT1 MUTATED FAT1 WILD-TYPE 
           112            399 
[1] "JUB MUTATION ANALYSIS"
[1] 3
  JUB MUTATED JUB WILD-TYPE 
           34           477 
  JUB MUTATED JUB WILD-TYPE 
           34           477 
[1] "ZNF750 MUTATION ANALYSIS"
[1] 3
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              21              490 
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              21              490 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              484 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              484 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
             22             489 
  HLA-A MUTATED HLA-A WILD-TYPE 
             22             489 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             24             487 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             24             487 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
            15            496 
  RAC1 MUTATED RAC1 WILD-TYPE 
            15            496 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            31            480 
  HRAS MUTATED HRAS WILD-TYPE 
            31            480 
[1] "EP300 MUTATION ANALYSIS"
[1] 3
  EP300 MUTATED EP300 WILD-TYPE 
             38             473 
  EP300 MUTATED EP300 WILD-TYPE 
             38             473 
[1] "OR6C65 MUTATION ANALYSIS"
[1] 3
  OR6C65 MUTATED OR6C65 WILD-TYPE 
              16              495 
  OR6C65 MUTATED OR6C65 WILD-TYPE 
              16              495 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              94              417 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              94              417 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            497 
  PTEN MUTATED PTEN WILD-TYPE 
            14            497 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
             18             493 
  RASA1 MUTATED RASA1 WILD-TYPE 
             18             493 
[1] "MAPK1 MUTATION ANALYSIS"
[1] 3
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              9             502 
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              9             502 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               9              502 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               9              502 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             17             494 
  KDM6A MUTATED KDM6A WILD-TYPE 
             17             494 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           17           494 
  RB1 MUTATED RB1 WILD-TYPE 
           17           494 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             489 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             489 
[1] "KRT17 MUTATION ANALYSIS"
[1] 3
  KRT17 MUTATED KRT17 WILD-TYPE 
              6             505 
  KRT17 MUTATED KRT17 WILD-TYPE 
              6             505 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            10            501 
  RHOA MUTATED RHOA WILD-TYPE 
            10            501 
[1] "PTPN14 MUTATION ANALYSIS"
[1] 3
  PTPN14 MUTATED PTPN14 WILD-TYPE 
              16              495 
  PTPN14 MUTATED PTPN14 WILD-TYPE 
              16              495 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                507 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                507 
[1] "ZNF623 MUTATION ANALYSIS"
[1] 3
  ZNF623 MUTATED ZNF623 WILD-TYPE 
              12              499 
  ZNF623 MUTATED ZNF623 WILD-TYPE 
              12              499 
[1] "TIGD4 MUTATION ANALYSIS"
[1] 3
  TIGD4 MUTATED TIGD4 WILD-TYPE 
              7             504 
  TIGD4 MUTATED TIGD4 WILD-TYPE 
              7             504 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               7              504 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               7              504 
[1] "CUL3 MUTATION ANALYSIS"
[1] 3
  CUL3 MUTATED CUL3 WILD-TYPE 
            16            495 
  CUL3 MUTATED CUL3 WILD-TYPE 
            16            495 
[1] "CREBBP MUTATION ANALYSIS"
[1] 3
  CREBBP MUTATED CREBBP WILD-TYPE 
              34              477 
  CREBBP MUTATED CREBBP WILD-TYPE 
              34              477 
[1] "VEZF1 MUTATION ANALYSIS"
[1] 3
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              8             503 
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              8             503 
[1] "MLL4 MUTATION ANALYSIS"
[1] 3
  MLL4 MUTATED MLL4 WILD-TYPE 
            19            492 
  MLL4 MUTATED MLL4 WILD-TYPE 
            19            492 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            17            494 
  IRS4 MUTATED IRS4 WILD-TYPE 
            17            494 
[1] "HUWE1 MUTATION ANALYSIS"
[1] 3
  HUWE1 MUTATED HUWE1 WILD-TYPE 
             46             465 
  HUWE1 MUTATED HUWE1 WILD-TYPE 
             46             465 
[1] "THSD7A MUTATION ANALYSIS"
[1] 3
  THSD7A MUTATED THSD7A WILD-TYPE 
              32              479 
  THSD7A MUTATED THSD7A WILD-TYPE 
              32              479 
[1] "C3ORF59 MUTATION ANALYSIS"
[1] 3
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
               10               501 
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
               10               501 
[1] "DYSF MUTATION ANALYSIS"
[1] 3
  DYSF MUTATED DYSF WILD-TYPE 
            20            491 
  DYSF MUTATED DYSF WILD-TYPE 
            20            491 
[1] "ZNF233 MUTATION ANALYSIS"
[1] 3
  ZNF233 MUTATED ZNF233 WILD-TYPE 
               9              502 
  ZNF233 MUTATED ZNF233 WILD-TYPE 
               9              502 
[1] "KIAA1267 MUTATION ANALYSIS"
[1] 3
  KIAA1267 MUTATED KIAA1267 WILD-TYPE 
                11                500 
  KIAA1267 MUTATED KIAA1267 WILD-TYPE 
                11                500 
[1] "ASXL1 MUTATION ANALYSIS"
[1] 3
  ASXL1 MUTATED ASXL1 WILD-TYPE 
             16             495 
  ASXL1 MUTATED ASXL1 WILD-TYPE 
             16             495 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             13             498 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             13             498 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               4              507 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               4              507 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             3            508 
  EMG1 MUTATED EMG1 WILD-TYPE 
             3            508 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               8              503 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               8              503 
[1] "KRTAP5-7 MUTATION ANALYSIS"
[1] 3
  KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE 
                 5                506 
  KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE 
                 5                506 
[1] "SLC9A6 MUTATION ANALYSIS"
[1] 3
  SLC9A6 MUTATED SLC9A6 WILD-TYPE 
               5              506 
  SLC9A6 MUTATED SLC9A6 WILD-TYPE 
               5              506 
[1] "ELF4 MUTATION ANALYSIS"
[1] 3
  ELF4 MUTATED ELF4 WILD-TYPE 
             7            504 
  ELF4 MUTATED ELF4 WILD-TYPE 
             7            504 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            15            496 
  CTCF MUTATED CTCF WILD-TYPE 
            15            496 
[1] "HNRNPL MUTATION ANALYSIS"
[1] 3
  HNRNPL MUTATED HNRNPL WILD-TYPE 
              11              500 
  HNRNPL MUTATED HNRNPL WILD-TYPE 
              11              500 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                8               503 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                8               503 
[1] "MYH9 MUTATION ANALYSIS"
[1] 3
  MYH9 MUTATED MYH9 WILD-TYPE 
            21            490 
  MYH9 MUTATED MYH9 WILD-TYPE 
            21            490 
[1] "NOTCH2 MUTATION ANALYSIS"
[1] 3
  NOTCH2 MUTATED NOTCH2 WILD-TYPE 
              21              490 
  NOTCH2 MUTATED NOTCH2 WILD-TYPE 
              21              490 
[1] "NCOR1 MUTATION ANALYSIS"
[1] 3
  NCOR1 MUTATED NCOR1 WILD-TYPE 
             17             494 
  NCOR1 MUTATED NCOR1 WILD-TYPE 
             17             494 
[1] "AK5 MUTATION ANALYSIS"
[1] 3
  AK5 MUTATED AK5 WILD-TYPE 
           13           498 
  AK5 MUTATED AK5 WILD-TYPE 
           13           498 
[1] "SPTY2D1 MUTATION ANALYSIS"
[1] 3
  SPTY2D1 MUTATED SPTY2D1 WILD-TYPE 
               10               501 
  SPTY2D1 MUTATED SPTY2D1 WILD-TYPE 
               10               501 
[1] "PIWIL2 MUTATION ANALYSIS"
[1] 3
  PIWIL2 MUTATED PIWIL2 WILD-TYPE 
               8              503 
  PIWIL2 MUTATED PIWIL2 WILD-TYPE 
               8              503 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 511 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 511 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      181     94     50     35
  TP53 WILD-TYPE     18     27     89     11
D1V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          181             18
  CLUS_2           94             27
  CLUS_3           50             89
  CLUS_4           35             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED       62     72     69     80      8     70      3
  TP53 WILD-TYPE     24     10     33      8     65      5      2
D1V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           62             24
  CLUS_2           72             10
  CLUS_3           69             33
  CLUS_4           80              8
  CLUS_5            8             65
  CLUS_6           70              5
  CLUS_7            3              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       39     19     25     23     59
  TP53 WILD-TYPE     12     11      8      4     10
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           39             12
  CLUS_2           19             11
  CLUS_3           25              8
  CLUS_4           23              4
  CLUS_5           59             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       62     68     35
  TP53 WILD-TYPE     16     17     12
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           62             16
  CLUS_2           68             17
  CLUS_3           35             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      110     73     93     83
  TP53 WILD-TYPE     23     37     70     14
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          110             23
  CLUS_2           73             37
  CLUS_3           93             70
  CLUS_4           83             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      145     82    122     10
  TP53 WILD-TYPE     31     15     46     52
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          145             31
  CLUS_2           82             15
  CLUS_3          122             46
  CLUS_4           10             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       69     99     58     75     60
  TP53 WILD-TYPE      8     36     70     14     17
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           69              8
  CLUS_2           99             36
  CLUS_3           58             70
  CLUS_4           75             14
  CLUS_5           60             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      158    117     86
  TP53 WILD-TYPE     32     23     90
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          158             32
  CLUS_2          117             23
  CLUS_3           86             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      116    123     92
  TP53 WILD-TYPE     24     62     45
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          116             24
  CLUS_2          123             62
  CLUS_3           92             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      141     75    115
  TP53 WILD-TYPE     30     24     77
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          141             30
  CLUS_2           75             24
  CLUS_3          115             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       53     20     18     20
  CDKN2A WILD-TYPE    146    101    121     26
D2V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             53              146
  CLUS_2             20              101
  CLUS_3             18              121
  CLUS_4             20               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDKN2A MUTATED       19     14     33     22      1     23      0
  CDKN2A WILD-TYPE     67     68     69     66     72     52      5
D2V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             19               67
  CLUS_2             14               68
  CLUS_3             33               69
  CLUS_4             22               66
  CLUS_5              1               72
  CLUS_6             23               52
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED       11      5      5     14     22
  CDKN2A WILD-TYPE     40     25     28     13     47
D2V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11               40
  CLUS_2              5               25
  CLUS_3              5               28
  CLUS_4             14               13
  CLUS_5             22               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       23     21     13
  CDKN2A WILD-TYPE     55     64     34
D2V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             23               55
  CLUS_2             21               64
  CLUS_3             13               34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       28     32     27     24
  CDKN2A WILD-TYPE    105     78    136     73
D2V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             28              105
  CLUS_2             32               78
  CLUS_3             27              136
  CLUS_4             24               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       47     22     41      1
  CDKN2A WILD-TYPE    129     75    127     61
D2V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             47              129
  CLUS_2             22               75
  CLUS_3             41              127
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED       14     39     18     21     19
  CDKN2A WILD-TYPE     63     96    110     68     58
D2V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             14               63
  CLUS_2             39               96
  CLUS_3             18              110
  CLUS_4             21               68
  CLUS_5             19               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       53     27     31
  CDKN2A WILD-TYPE    137    113    145
D2V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             53              137
  CLUS_2             27              113
  CLUS_3             31              145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       31     43     29
  CDKN2A WILD-TYPE    109    142    108
D2V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             31              109
  CLUS_2             43              142
  CLUS_3             29              108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       49     23     31
  CDKN2A WILD-TYPE    122     76    161
D2V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             49              122
  CLUS_2             23               76
  CLUS_3             31              161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = NSD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSD1 MUTATED       25     24      9      3
  NSD1 WILD-TYPE    174     97    130     43
D3V1, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           25            174
  CLUS_2           24             97
  CLUS_3            9            130
  CLUS_4            3             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NSD1 MUTATED        4     48      3      1      5      1      0
  NSD1 WILD-TYPE     82     34     99     87     68     74      5
D3V2, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            4             82
  CLUS_2           48             34
  CLUS_3            3             99
  CLUS_4            1             87
  CLUS_5            5             68
  CLUS_6            1             74
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NSD1 MUTATED        7      1      8      3      2
  NSD1 WILD-TYPE     44     29     25     24     67
D3V3, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            1             29
  CLUS_3            8             25
  CLUS_4            3             24
  CLUS_5            2             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED        7      4     10
  NSD1 WILD-TYPE     71     81     37
D3V4, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            7             71
  CLUS_2            4             81
  CLUS_3           10             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSD1 MUTATED       11      6     39      5
  NSD1 WILD-TYPE    122    104    124     92
D3V5, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           11            122
  CLUS_2            6            104
  CLUS_3           39            124
  CLUS_4            5             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSD1 MUTATED       10     39      5      7
  NSD1 WILD-TYPE    166     58    163     55
D3V6, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           10            166
  CLUS_2           39             58
  CLUS_3            5            163
  CLUS_4            7             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NSD1 MUTATED       18     15     18      3      8
  NSD1 WILD-TYPE     59    120    110     86     69
D3V7, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           18             59
  CLUS_2           15            120
  CLUS_3           18            110
  CLUS_4            3             86
  CLUS_5            8             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       13     31     18
  NSD1 WILD-TYPE    177    109    158
D3V8, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           13            177
  CLUS_2           31            109
  CLUS_3           18            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       12     27     19
  NSD1 WILD-TYPE    128    158    118
D3V9, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           12            128
  CLUS_2           27            158
  CLUS_3           19            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       14      5     39
  NSD1 WILD-TYPE    157     94    153
D3V10, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           14            157
  CLUS_2            5             94
  CLUS_3           39            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = CASP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        6      2     36      9
  CASP8 WILD-TYPE    193    119    103     37
D4V1, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             6             193
  CLUS_2             2             119
  CLUS_3            36             103
  CLUS_4             9              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP8 MUTATED        8      3     39      0      0      4      0
  CASP8 WILD-TYPE     78     79     63     88     73     71      5
D4V2, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             8              78
  CLUS_2             3              79
  CLUS_3            39              63
  CLUS_4             0              88
  CLUS_5             0              73
  CLUS_6             4              71
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        5      2      1      7      7
  CASP8 WILD-TYPE     46     28     32     20     62
D4V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             2              28
  CLUS_3             1              32
  CLUS_4             7              20
  CLUS_5             7              62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       11      6      5
  CASP8 WILD-TYPE     67     79     42
D4V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            11              67
  CLUS_2             6              79
  CLUS_3             5              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED       19     26      4      5
  CASP8 WILD-TYPE    114     84    159     92
D4V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            19             114
  CLUS_2            26              84
  CLUS_3             4             159
  CLUS_4             5              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED       16      4     34      0
  CASP8 WILD-TYPE    160     93    134     62
D4V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            16             160
  CLUS_2             4              93
  CLUS_3            34             134
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        5     28      3     14      3
  CASP8 WILD-TYPE     72    107    125     75     74
D4V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             5              72
  CLUS_2            28             107
  CLUS_3             3             125
  CLUS_4            14              75
  CLUS_5             3              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       18     18     17
  CASP8 WILD-TYPE    172    122    159
D4V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            18             172
  CLUS_2            18             122
  CLUS_3            17             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       12     27     11
  CASP8 WILD-TYPE    128    158    126
D4V9, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            12             128
  CLUS_2            27             158
  CLUS_3            11             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       17     19     14
  CASP8 WILD-TYPE    154     80    178
D4V10, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            17             154
  CLUS_2            19              80
  CLUS_3            14             178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       28     27     18      7
  MLL2 WILD-TYPE    171     94    121     39
D5V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           28            171
  CLUS_2           27             94
  CLUS_3           18            121
  CLUS_4            7             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL2 MUTATED        7     19     14     20     11      8      2
  MLL2 WILD-TYPE     79     63     88     68     62     67      3
D5V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            7             79
  CLUS_2           19             63
  CLUS_3           14             88
  CLUS_4           20             68
  CLUS_5           11             62
  CLUS_6            8             67
  CLUS_7            2              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        8      6      9      4     11
  MLL2 WILD-TYPE     43     24     24     23     58
D5V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            8             43
  CLUS_2            6             24
  CLUS_3            9             24
  CLUS_4            4             23
  CLUS_5           11             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       14     18      6
  MLL2 WILD-TYPE     64     67     41
D5V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           14             64
  CLUS_2           18             67
  CLUS_3            6             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       21     14     33     11
  MLL2 WILD-TYPE    112     96    130     86
D5V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           21            112
  CLUS_2           14             96
  CLUS_3           33            130
  CLUS_4           11             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       21     19     30      9
  MLL2 WILD-TYPE    155     78    138     53
D5V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           21            155
  CLUS_2           19             78
  CLUS_3           30            138
  CLUS_4            9             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED       17     18     24     13      8
  MLL2 WILD-TYPE     60    117    104     76     69
D5V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           17             60
  CLUS_2           18            117
  CLUS_3           24            104
  CLUS_4           13             76
  CLUS_5            8             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       22     30     28
  MLL2 WILD-TYPE    168    110    148
D5V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           22            168
  CLUS_2           30            110
  CLUS_3           28            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       20     26     25
  MLL2 WILD-TYPE    120    159    112
D5V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           20            120
  CLUS_2           26            159
  CLUS_3           25            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       20     21     30
  MLL2 WILD-TYPE    151     78    162
D5V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           20            151
  CLUS_2           21             78
  CLUS_3           30            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = TGFBR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        6      1     14      3
  TGFBR2 WILD-TYPE    193    120    125     43
D6V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              6              193
  CLUS_2              1              120
  CLUS_3             14              125
  CLUS_4              3               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR2 MUTATED        4      5     10      1      1      2      1
  TGFBR2 WILD-TYPE     82     77     92     87     72     73      4
D6V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4               82
  CLUS_2              5               77
  CLUS_3             10               92
  CLUS_4              1               87
  CLUS_5              1               72
  CLUS_6              2               73
  CLUS_7              1                4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        3      1      0      0      4
  TGFBR2 WILD-TYPE     48     29     33     27     65
D6V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               29
  CLUS_3              0               33
  CLUS_4              0               27
  CLUS_5              4               65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        3      4      1
  TGFBR2 WILD-TYPE     75     81     46
D6V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              4               81
  CLUS_3              1               46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        7      8      5      4
  TGFBR2 WILD-TYPE    126    102    158     93
D6V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              7              126
  CLUS_2              8              102
  CLUS_3              5              158
  CLUS_4              4               93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        9      4      9      2
  TGFBR2 WILD-TYPE    167     93    159     60
D6V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              9              167
  CLUS_2              4               93
  CLUS_3              9              159
  CLUS_4              2               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        2      8      3      7      4
  TGFBR2 WILD-TYPE     75    127    125     82     73
D6V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              8              127
  CLUS_3              3              125
  CLUS_4              7               82
  CLUS_5              4               73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        9      8      7
  TGFBR2 WILD-TYPE    181    132    169
D6V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              9              181
  CLUS_2              8              132
  CLUS_3              7              169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED       10      8      5
  TGFBR2 WILD-TYPE    130    177    132
D6V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1             10              130
  CLUS_2              8              177
  CLUS_3              5              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        9      7      7
  TGFBR2 WILD-TYPE    162     92    185
D6V10, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              9              162
  CLUS_2              7               92
  CLUS_3              7              185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = HLA-B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        3      4     13      4
  HLA-B WILD-TYPE    196    117    126     42
D7V1, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3             196
  CLUS_2             4             117
  CLUS_3            13             126
  CLUS_4             4              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-B MUTATED        1      1     13      4      3      2      0
  HLA-B WILD-TYPE     85     81     89     84     70     73      5
D7V2, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              85
  CLUS_2             1              81
  CLUS_3            13              89
  CLUS_4             4              84
  CLUS_5             3              70
  CLUS_6             2              73
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        1      2      1      1      2
  HLA-B WILD-TYPE     50     28     32     26     67
D7V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              28
  CLUS_3             1              32
  CLUS_4             1              26
  CLUS_5             2              67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        3      1      3
  HLA-B WILD-TYPE     75     84     44
D7V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              75
  CLUS_2             1              84
  CLUS_3             3              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        6     11      4      2
  HLA-B WILD-TYPE    127     99    159     95
D7V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             6             127
  CLUS_2            11              99
  CLUS_3             4             159
  CLUS_4             2              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        4      5     13      1
  HLA-B WILD-TYPE    172     92    155     61
D7V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             4             172
  CLUS_2             5              92
  CLUS_3            13             155
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        7      8      5      4      0
  HLA-B WILD-TYPE     70    127    123     85     77
D7V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             7              70
  CLUS_2             8             127
  CLUS_3             5             123
  CLUS_4             4              85
  CLUS_5             0              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        5      8     11
  HLA-B WILD-TYPE    185    132    165
D7V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             5             185
  CLUS_2             8             132
  CLUS_3            11             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        1     14      8
  HLA-B WILD-TYPE    139    171    129
D7V9, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1             139
  CLUS_2            14             171
  CLUS_3             8             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        4      9     10
  HLA-B WILD-TYPE    167     90    182
D7V10, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             4             167
  CLUS_2             9              90
  CLUS_3            10             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        7     13     11      2
  FBXW7 WILD-TYPE    192    108    128     44
D8V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             7             192
  CLUS_2            13             108
  CLUS_3            11             128
  CLUS_4             2              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXW7 MUTATED        1      7     10      8      3      3      1
  FBXW7 WILD-TYPE     85     75     92     80     70     72      4
D8V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             7              75
  CLUS_3            10              92
  CLUS_4             8              80
  CLUS_5             3              70
  CLUS_6             3              72
  CLUS_7             1               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        1      0      4      1      4
  FBXW7 WILD-TYPE     50     30     29     26     65
D8V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              30
  CLUS_3             4              29
  CLUS_4             1              26
  CLUS_5             4              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        2      7      1
  FBXW7 WILD-TYPE     76     78     46
D8V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              76
  CLUS_2             7              78
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        5     11     13      3
  FBXW7 WILD-TYPE    128     99    150     94
D8V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5             128
  CLUS_2            11              99
  CLUS_3            13             150
  CLUS_4             3              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        8      9     12      3
  FBXW7 WILD-TYPE    168     88    156     59
D8V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8             168
  CLUS_2             9              88
  CLUS_3            12             156
  CLUS_4             3              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        3     13      8      6      3
  FBXW7 WILD-TYPE     74    122    120     83     74
D8V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             3              74
  CLUS_2            13             122
  CLUS_3             8             120
  CLUS_4             6              83
  CLUS_5             3              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       11     12     10
  FBXW7 WILD-TYPE    179    128    166
D8V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11             179
  CLUS_2            12             128
  CLUS_3            10             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        5     17      7
  FBXW7 WILD-TYPE    135    168    130
D8V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5             135
  CLUS_2            17             168
  CLUS_3             7             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        9      9     11
  FBXW7 WILD-TYPE    162     90    181
D8V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             9             162
  CLUS_2             9              90
  CLUS_3            11             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = NOTCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED       32     13     33     10
  NOTCH1 WILD-TYPE    167    108    106     36
D9V1, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             32              167
  CLUS_2             13              108
  CLUS_3             33              106
  CLUS_4             10               36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED       20      9     33     14      3      9      2
  NOTCH1 WILD-TYPE     66     73     69     74     70     66      3
D9V2, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             20               66
  CLUS_2              9               73
  CLUS_3             33               69
  CLUS_4             14               74
  CLUS_5              3               70
  CLUS_6              9               66
  CLUS_7              2                3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH1 MUTATED       11      7      2      5     14
  NOTCH1 WILD-TYPE     40     23     31     22     55
D9V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             11               40
  CLUS_2              7               23
  CLUS_3              2               31
  CLUS_4              5               22
  CLUS_5             14               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       21     11      7
  NOTCH1 WILD-TYPE     57     74     40
D9V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             21               57
  CLUS_2             11               74
  CLUS_3              7               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED       23     29     14     23
  NOTCH1 WILD-TYPE    110     81    149     74
D9V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             23              110
  CLUS_2             29               81
  CLUS_3             14              149
  CLUS_4             23               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED       38     12     36      3
  NOTCH1 WILD-TYPE    138     85    132     59
D9V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             38              138
  CLUS_2             12               85
  CLUS_3             36              132
  CLUS_4              3               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH1 MUTATED       10     33      8     19     19
  NOTCH1 WILD-TYPE     67    102    120     70     58
D9V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             10               67
  CLUS_2             33              102
  CLUS_3              8              120
  CLUS_4             19               70
  CLUS_5             19               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       42     24     23
  NOTCH1 WILD-TYPE    148    116    153
D9V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             42              148
  CLUS_2             24              116
  CLUS_3             23              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       31     32     16
  NOTCH1 WILD-TYPE    109    153    121
D9V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             31              109
  CLUS_2             32              153
  CLUS_3             16              121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       41     14     24
  NOTCH1 WILD-TYPE    130     85    168
D9V10, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             41              130
  CLUS_2             14               85
  CLUS_3             24              168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = FAT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       33     25     38     15
  FAT1 WILD-TYPE    166     96    101     31
D10V1, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           33            166
  CLUS_2           25             96
  CLUS_3           38            101
  CLUS_4           15             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAT1 MUTATED       16     17     42     22      2     12      1
  FAT1 WILD-TYPE     70     65     60     66     71     63      4
D10V2, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             70
  CLUS_2           17             65
  CLUS_3           42             60
  CLUS_4           22             66
  CLUS_5            2             71
  CLUS_6           12             63
  CLUS_7            1              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED       12      7      7      4     16
  FAT1 WILD-TYPE     39     23     26     23     53
D10V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           12             39
  CLUS_2            7             23
  CLUS_3            7             26
  CLUS_4            4             23
  CLUS_5           16             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       16     22      8
  FAT1 WILD-TYPE     62     63     39
D10V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             62
  CLUS_2           22             63
  CLUS_3            8             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       32     34     25     19
  FAT1 WILD-TYPE    101     76    138     78
D10V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           32            101
  CLUS_2           34             76
  CLUS_3           25            138
  CLUS_4           19             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       41     19     47      3
  FAT1 WILD-TYPE    135     78    121     59
D10V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           41            135
  CLUS_2           19             78
  CLUS_3           47            121
  CLUS_4            3             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED       18     34     16     26     16
  FAT1 WILD-TYPE     59    101    112     63     61
D10V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           18             59
  CLUS_2           34            101
  CLUS_3           16            112
  CLUS_4           26             63
  CLUS_5           16             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       46     29     35
  FAT1 WILD-TYPE    144    111    141
D10V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           46            144
  CLUS_2           29            111
  CLUS_3           35            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       30     48     25
  FAT1 WILD-TYPE    110    137    112
D10V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           30            110
  CLUS_2           48            137
  CLUS_3           25            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       44     23     36
  FAT1 WILD-TYPE    127     76    156
D10V10, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           44            127
  CLUS_2           23             76
  CLUS_3           36            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = JUB MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JUB MUTATED       14      8      8      4
  JUB WILD-TYPE    185    113    131     42
D11V1, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1          14           185
  CLUS_2           8           113
  CLUS_3           8           131
  CLUS_4           4            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JUB MUTATED        3      5     10      8      2      6      0
  JUB WILD-TYPE     83     77     92     80     71     69      5
D11V2, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           3            83
  CLUS_2           5            77
  CLUS_3          10            92
  CLUS_4           8            80
  CLUS_5           2            71
  CLUS_6           6            69
  CLUS_7           0             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JUB MUTATED        6      1      3      3      1
  JUB WILD-TYPE     45     29     30     24     68
D11V3, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           6            45
  CLUS_2           1            29
  CLUS_3           3            30
  CLUS_4           3            24
  CLUS_5           1            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        7      5      2
  JUB WILD-TYPE     71     80     45
D11V4, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7            71
  CLUS_2           5            80
  CLUS_3           2            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JUB MUTATED       13      8     11      2
  JUB WILD-TYPE    120    102    152     95
D11V5, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1          13           120
  CLUS_2           8           102
  CLUS_3          11           152
  CLUS_4           2            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JUB MUTATED       10      8     13      3
  JUB WILD-TYPE    166     89    155     59
D11V6, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1          10           166
  CLUS_2           8            89
  CLUS_3          13           155
  CLUS_4           3            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JUB MUTATED        8     12      8      6      0
  JUB WILD-TYPE     69    123    120     83     77
D11V7, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           8            69
  CLUS_2          12           123
  CLUS_3           8           120
  CLUS_4           6            83
  CLUS_5           0            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        9     12     13
  JUB WILD-TYPE    181    128    163
D11V8, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           9           181
  CLUS_2          12           128
  CLUS_3          13           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        8     12     14
  JUB WILD-TYPE    132    173    123
D11V9, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           8           132
  CLUS_2          12           173
  CLUS_3          14           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        9      9     16
  JUB WILD-TYPE    162     90    176
D11V10, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           9           162
  CLUS_2           9            90
  CLUS_3          16           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = ZNF750 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF750 MUTATED        5      9      6      1
  ZNF750 WILD-TYPE    194    112    133     45
D12V1, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              5              194
  CLUS_2              9              112
  CLUS_3              6              133
  CLUS_4              1               45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF750 MUTATED        1      3      3      6      8      0      0
  ZNF750 WILD-TYPE     85     79     99     82     65     75      5
D12V2, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              3               79
  CLUS_3              3               99
  CLUS_4              6               82
  CLUS_5              8               65
  CLUS_6              0               75
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF750 MUTATED        1      0      2      0      2
  ZNF750 WILD-TYPE     50     30     31     27     67
D12V3, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               30
  CLUS_3              2               31
  CLUS_4              0               27
  CLUS_5              2               67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        1      4      0
  ZNF750 WILD-TYPE     77     81     47
D12V4, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               77
  CLUS_2              4               81
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF750 MUTATED        4      1     12      2
  ZNF750 WILD-TYPE    129    109    151     95
D12V5, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              4              129
  CLUS_2              1              109
  CLUS_3             12              151
  CLUS_4              2               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF750 MUTATED        3      5      4      7
  ZNF750 WILD-TYPE    173     92    164     55
D12V6, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3              173
  CLUS_2              5               92
  CLUS_3              4              164
  CLUS_4              7               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF750 MUTATED        6      1     12      0      2
  ZNF750 WILD-TYPE     71    134    116     89     75
D12V7, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              6               71
  CLUS_2              1              134
  CLUS_3             12              116
  CLUS_4              0               89
  CLUS_5              2               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        5      5     11
  ZNF750 WILD-TYPE    185    135    165
D12V8, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              5              185
  CLUS_2              5              135
  CLUS_3             11              165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        6      9      6
  ZNF750 WILD-TYPE    134    176    131
D12V9, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              6              134
  CLUS_2              9              176
  CLUS_3              6              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        5      3     13
  ZNF750 WILD-TYPE    166     96    179
D12V10, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              5              166
  CLUS_2              3               96
  CLUS_3             13              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = NFE2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        8      7      8      4
  NFE2L2 WILD-TYPE    191    114    131     42
D13V1, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              8              191
  CLUS_2              7              114
  CLUS_3              8              131
  CLUS_4              4               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFE2L2 MUTATED        1      3      7     15      1      0      0
  NFE2L2 WILD-TYPE     85     79     95     73     72     75      5
D13V2, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              3               79
  CLUS_3              7               95
  CLUS_4             15               73
  CLUS_5              1               72
  CLUS_6              0               75
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        3      2      5      2      1
  NFE2L2 WILD-TYPE     48     28     28     25     68
D13V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               28
  CLUS_3              5               28
  CLUS_4              2               25
  CLUS_5              1               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        5      6      2
  NFE2L2 WILD-TYPE     73     79     45
D13V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5               73
  CLUS_2              6               79
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        7      7      9      4
  NFE2L2 WILD-TYPE    126    103    154     93
D13V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              126
  CLUS_2              7              103
  CLUS_3              9              154
  CLUS_4              4               93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        7      9      9      2
  NFE2L2 WILD-TYPE    169     88    159     60
D13V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              169
  CLUS_2              9               88
  CLUS_3              9              159
  CLUS_4              2               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        5      2      8      8      4
  NFE2L2 WILD-TYPE     72    133    120     81     73
D13V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              2              133
  CLUS_3              8              120
  CLUS_4              8               81
  CLUS_5              4               73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        9      5     13
  NFE2L2 WILD-TYPE    181    135    163
D13V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              9              181
  CLUS_2              5              135
  CLUS_3             13              163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        9      9      8
  NFE2L2 WILD-TYPE    131    176    129
D13V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              9              131
  CLUS_2              9              176
  CLUS_3              8              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        9      4     13
  NFE2L2 WILD-TYPE    162     95    179
D13V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              9              162
  CLUS_2              4               95
  CLUS_3             13              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        4      1     13      4
  HLA-A WILD-TYPE    195    120    126     42
D14V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             4             195
  CLUS_2             1             120
  CLUS_3            13             126
  CLUS_4             4              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-A MUTATED        2      1     12      3      3      1      0
  HLA-A WILD-TYPE     84     81     90     85     70     74      5
D14V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              84
  CLUS_2             1              81
  CLUS_3            12              90
  CLUS_4             3              85
  CLUS_5             3              70
  CLUS_6             1              74
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        1      0      1      1      2
  HLA-A WILD-TYPE     50     30     32     26     67
D14V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              30
  CLUS_3             1              32
  CLUS_4             1              26
  CLUS_5             2              67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        1      2      2
  HLA-A WILD-TYPE     77     83     45
D14V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              77
  CLUS_2             2              83
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        9      8      4      1
  HLA-A WILD-TYPE    124    102    159     96
D14V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             9             124
  CLUS_2             8             102
  CLUS_3             4             159
  CLUS_4             1              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        2      1     16      3
  HLA-A WILD-TYPE    174     96    152     59
D14V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             174
  CLUS_2             1              96
  CLUS_3            16             152
  CLUS_4             3              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        3     10      4      4      1
  HLA-A WILD-TYPE     74    125    124     85     76
D14V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3              74
  CLUS_2            10             125
  CLUS_3             4             124
  CLUS_4             4              85
  CLUS_5             1              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        3     10      9
  HLA-A WILD-TYPE    187    130    167
D14V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             187
  CLUS_2            10             130
  CLUS_3             9             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        4     12      6
  HLA-A WILD-TYPE    136    173    131
D14V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             4             136
  CLUS_2            12             173
  CLUS_3             6             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        4     10      8
  HLA-A WILD-TYPE    167     89    184
D14V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             4             167
  CLUS_2            10              89
  CLUS_3             8             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = EPHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        8      3     10      2
  EPHA2 WILD-TYPE    191    118    129     44
D15V1, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             8             191
  CLUS_2             3             118
  CLUS_3            10             129
  CLUS_4             2              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA2 MUTATED        0      5     13      0      2      4      0
  EPHA2 WILD-TYPE     86     77     89     88     71     71      5
D15V2, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             5              77
  CLUS_3            13              89
  CLUS_4             0              88
  CLUS_5             2              71
  CLUS_6             4              71
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        4      1      2      1      4
  EPHA2 WILD-TYPE     47     29     31     26     65
D15V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              29
  CLUS_3             2              31
  CLUS_4             1              26
  CLUS_5             4              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        5      5      2
  EPHA2 WILD-TYPE     73     80     45
D15V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              73
  CLUS_2             5              80
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED       10      5      5      4
  EPHA2 WILD-TYPE    123    105    158     93
D15V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            10             123
  CLUS_2             5             105
  CLUS_3             5             158
  CLUS_4             4              93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        8      3     12      1
  EPHA2 WILD-TYPE    168     94    156     61
D15V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             8             168
  CLUS_2             3              94
  CLUS_3            12             156
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        5      8      4      4      2
  EPHA2 WILD-TYPE     72    127    124     85     75
D15V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              72
  CLUS_2             8             127
  CLUS_3             4             124
  CLUS_4             4              85
  CLUS_5             2              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        8     10      5
  EPHA2 WILD-TYPE    182    130    171
D15V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             8             182
  CLUS_2            10             130
  CLUS_3             5             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        5     11      4
  EPHA2 WILD-TYPE    135    174    133
D15V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5             135
  CLUS_2            11             174
  CLUS_3             4             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        7      7      6
  EPHA2 WILD-TYPE    164     92    186
D15V10, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             7             164
  CLUS_2             7              92
  CLUS_3             6             186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = RAC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        2      1     10      2
  RAC1 WILD-TYPE    197    120    129     44
D16V1, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2            197
  CLUS_2            1            120
  CLUS_3           10            129
  CLUS_4            2             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAC1 MUTATED        4      0      8      1      1      1      0
  RAC1 WILD-TYPE     82     82     94     87     72     74      5
D16V2, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            4             82
  CLUS_2            0             82
  CLUS_3            8             94
  CLUS_4            1             87
  CLUS_5            1             72
  CLUS_6            1             74
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAC1 MUTATED        1      1      0      1      1
  RAC1 WILD-TYPE     50     29     33     26     68
D16V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             29
  CLUS_3            0             33
  CLUS_4            1             26
  CLUS_5            1             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        2      1      1
  RAC1 WILD-TYPE     76     84     46
D16V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            1             84
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        1      9      3      1
  RAC1 WILD-TYPE    132    101    160     96
D16V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1            132
  CLUS_2            9            101
  CLUS_3            3            160
  CLUS_4            1             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        2      1      9      2
  RAC1 WILD-TYPE    174     96    159     60
D16V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2            174
  CLUS_2            1             96
  CLUS_3            9            159
  CLUS_4            2             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAC1 MUTATED        2      4      4      3      2
  RAC1 WILD-TYPE     75    131    124     86     75
D16V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            4            131
  CLUS_3            4            124
  CLUS_4            3             86
  CLUS_5            2             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        4      3      8
  RAC1 WILD-TYPE    186    137    168
D16V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            4            186
  CLUS_2            3            137
  CLUS_3            8            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        2      7      4
  RAC1 WILD-TYPE    138    178    133
D16V9, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2            138
  CLUS_2            7            178
  CLUS_3            4            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      3      7
  RAC1 WILD-TYPE    168     96    185
D16V10, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3            168
  CLUS_2            3             96
  CLUS_3            7            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        1      0     25      4
  HRAS WILD-TYPE    198    121    114     42
D17V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            198
  CLUS_2            0            121
  CLUS_3           25            114
  CLUS_4            4             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HRAS MUTATED        5      2     20      1      1      2      0
  HRAS WILD-TYPE     81     80     82     87     72     73      5
D17V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            5             81
  CLUS_2            2             80
  CLUS_3           20             82
  CLUS_4            1             87
  CLUS_5            1             72
  CLUS_6            2             73
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        2      0      2      2      2
  HRAS WILD-TYPE     49     30     31     25     67
D17V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             30
  CLUS_3            2             31
  CLUS_4            2             25
  CLUS_5            2             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        4      2      2
  HRAS WILD-TYPE     74     83     45
D17V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4             74
  CLUS_2            2             83
  CLUS_3            2             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED       11     14      2      4
  HRAS WILD-TYPE    122     96    161     93
D17V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           11            122
  CLUS_2           14             96
  CLUS_3            2            161
  CLUS_4            4             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        9      3     18      1
  HRAS WILD-TYPE    167     94    150     61
D17V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            9            167
  CLUS_2            3             94
  CLUS_3           18            150
  CLUS_4            1             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        3     19      2      5      2
  HRAS WILD-TYPE     74    116    126     84     75
D17V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3             74
  CLUS_2           19            116
  CLUS_3            2            126
  CLUS_4            5             84
  CLUS_5            2             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED       10      5     16
  HRAS WILD-TYPE    180    135    160
D17V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           10            180
  CLUS_2            5            135
  CLUS_3           16            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        8     15      7
  HRAS WILD-TYPE    132    170    130
D17V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            8            132
  CLUS_2           15            170
  CLUS_3            7            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED       10      9     11
  HRAS WILD-TYPE    161     90    181
D17V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           10            161
  CLUS_2            9             90
  CLUS_3           11            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = EP300 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       10      6     18      4
  EP300 WILD-TYPE    189    115    121     42
D18V1, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10             189
  CLUS_2             6             115
  CLUS_3            18             121
  CLUS_4             4              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EP300 MUTATED        5      2     13      8      9      1      0
  EP300 WILD-TYPE     81     80     89     80     64     74      5
D18V2, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             5              81
  CLUS_2             2              80
  CLUS_3            13              89
  CLUS_4             8              80
  CLUS_5             9              64
  CLUS_6             1              74
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EP300 MUTATED        3      2      1      4      3
  EP300 WILD-TYPE     48     28     32     23     66
D18V3, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              28
  CLUS_3             1              32
  CLUS_4             4              23
  CLUS_5             3              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        7      6      0
  EP300 WILD-TYPE     71     79     47
D18V4, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             7              71
  CLUS_2             6              79
  CLUS_3             0              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       10     15      8      5
  EP300 WILD-TYPE    123     95    155     92
D18V5, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10             123
  CLUS_2            15              95
  CLUS_3             8             155
  CLUS_4             5              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       13      2     18      5
  EP300 WILD-TYPE    163     95    150     57
D18V6, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            13             163
  CLUS_2             2              95
  CLUS_3            18             150
  CLUS_4             5              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EP300 MUTATED        4     12      9      9      2
  EP300 WILD-TYPE     73    123    119     80     75
D18V7, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             4              73
  CLUS_2            12             123
  CLUS_3             9             119
  CLUS_4             9              80
  CLUS_5             2              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       12      5     19
  EP300 WILD-TYPE    178    135    157
D18V8, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            12             178
  CLUS_2             5             135
  CLUS_3            19             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        7     15     12
  EP300 WILD-TYPE    133    170    125
D18V9, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             7             133
  CLUS_2            15             170
  CLUS_3            12             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       10      5     19
  EP300 WILD-TYPE    161     94    173
D18V10, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10             161
  CLUS_2             5              94
  CLUS_3            19             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = OR6C65 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C65 MUTATED        7      3      5      1
  OR6C65 WILD-TYPE    192    118    134     45
D19V1, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              7              192
  CLUS_2              3              118
  CLUS_3              5              134
  CLUS_4              1               45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR6C65 MUTATED        2      2      4      1      6      1      0
  OR6C65 WILD-TYPE     84     80     98     87     67     74      5
D19V2, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              2               80
  CLUS_3              4               98
  CLUS_4              1               87
  CLUS_5              6               67
  CLUS_6              1               74
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR6C65 MUTATED        2      2      0      1      2
  OR6C65 WILD-TYPE     49     28     33     26     67
D19V3, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               28
  CLUS_3              0               33
  CLUS_4              1               26
  CLUS_5              2               67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C65 MUTATED        3      4      0
  OR6C65 WILD-TYPE     75     81     47
D19V4, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              4               81
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C65 MUTATED        3      3      5      5
  OR6C65 WILD-TYPE    130    107    158     92
D19V5, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              3              130
  CLUS_2              3              107
  CLUS_3              5              158
  CLUS_4              5               92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C65 MUTATED        6      3      4      3
  OR6C65 WILD-TYPE    170     94    164     59
D19V6, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              6              170
  CLUS_2              3               94
  CLUS_3              4              164
  CLUS_4              3               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR6C65 MUTATED        0      6      7      0      3
  OR6C65 WILD-TYPE     77    129    121     89     74
D19V7, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              0               77
  CLUS_2              6              129
  CLUS_3              7              121
  CLUS_4              0               89
  CLUS_5              3               74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C65 MUTATED        6      3      7
  OR6C65 WILD-TYPE    184    137    169
D19V8, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              3              137
  CLUS_3              7              169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C65 MUTATED        0      6      4
  OR6C65 WILD-TYPE    140    179    133
D19V9, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              0              140
  CLUS_2              6              179
  CLUS_3              4              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C65 MUTATED        3      2      5
  OR6C65 WILD-TYPE    168     97    187
D19V10, multiclass
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  CLUS_1              3              168
  CLUS_2              2               97
  CLUS_3              5              187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       25     24     32     10
  PIK3CA WILD-TYPE    174     97    107     36
D20V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             25              174
  CLUS_2             24               97
  CLUS_3             32              107
  CLUS_4             10               36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED       16     13     17     18     21      8      1
  PIK3CA WILD-TYPE     70     69     85     70     52     67      4
D20V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             16               70
  CLUS_2             13               69
  CLUS_3             17               85
  CLUS_4             18               70
  CLUS_5             21               52
  CLUS_6              8               67
  CLUS_7              1                4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       10      6      7      4     13
  PIK3CA WILD-TYPE     41     24     26     23     56
D20V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             10               41
  CLUS_2              6               24
  CLUS_3              7               26
  CLUS_4              4               23
  CLUS_5             13               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       15     11     14
  PIK3CA WILD-TYPE     63     74     33
D20V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             15               63
  CLUS_2             11               74
  CLUS_3             14               33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       19     22     39     13
  PIK3CA WILD-TYPE    114     88    124     84
D20V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             19              114
  CLUS_2             22               88
  CLUS_3             39              124
  CLUS_4             13               84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       27     18     32     16
  PIK3CA WILD-TYPE    149     79    136     46
D20V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             27              149
  CLUS_2             18               79
  CLUS_3             32              136
  CLUS_4             16               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       13     24     34     14      9
  PIK3CA WILD-TYPE     64    111     94     75     68
D20V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             13               64
  CLUS_2             24              111
  CLUS_3             34               94
  CLUS_4             14               75
  CLUS_5              9               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       31     19     44
  PIK3CA WILD-TYPE    159    121    132
D20V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             31              159
  CLUS_2             19              121
  CLUS_3             44              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       22     30     34
  PIK3CA WILD-TYPE    118    155    103
D20V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22              118
  CLUS_2             30              155
  CLUS_3             34              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       31     13     42
  PIK3CA WILD-TYPE    140     86    150
D20V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             31              140
  CLUS_2             13               86
  CLUS_3             42              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        5      4      3      2
  PTEN WILD-TYPE    194    117    136     44
D21V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5            194
  CLUS_2            4            117
  CLUS_3            3            136
  CLUS_4            2             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED        1      3      1      3      4      1      1
  PTEN WILD-TYPE     85     79    101     85     69     74      4
D21V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             85
  CLUS_2            3             79
  CLUS_3            1            101
  CLUS_4            3             85
  CLUS_5            4             69
  CLUS_6            1             74
  CLUS_7            1              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        1      2      0      0      1
  PTEN WILD-TYPE     50     28     33     27     68
D21V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             28
  CLUS_3            0             33
  CLUS_4            0             27
  CLUS_5            1             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      1      1
  PTEN WILD-TYPE     76     84     46
D21V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             76
  CLUS_2            1             84
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3      2      7      2
  PTEN WILD-TYPE    130    108    156     95
D21V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            130
  CLUS_2            2            108
  CLUS_3            7            156
  CLUS_4            2             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        2      4      5      3
  PTEN WILD-TYPE    174     93    163     59
D21V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            174
  CLUS_2            4             93
  CLUS_3            5            163
  CLUS_4            3             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        2      3      6      1      1
  PTEN WILD-TYPE     75    132    122     88     76
D21V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             75
  CLUS_2            3            132
  CLUS_3            6            122
  CLUS_4            1             88
  CLUS_5            1             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      5      6
  PTEN WILD-TYPE    188    135    170
D21V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            188
  CLUS_2            5            135
  CLUS_3            6            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        2      5      4
  PTEN WILD-TYPE    138    180    133
D21V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            138
  CLUS_2            5            180
  CLUS_3            4            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      2      8
  PTEN WILD-TYPE    170     97    184
D21V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            170
  CLUS_2            2             97
  CLUS_3            8            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = RASA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        8      6      2      1
  RASA1 WILD-TYPE    191    115    137     45
D22V1, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             8             191
  CLUS_2             6             115
  CLUS_3             2             137
  CLUS_4             1              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASA1 MUTATED        4      1      3      6      0      4      0
  RASA1 WILD-TYPE     82     81     99     82     73     71      5
D22V2, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             1              81
  CLUS_3             3              99
  CLUS_4             6              82
  CLUS_5             0              73
  CLUS_6             4              71
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        2      4      0      1      3
  RASA1 WILD-TYPE     49     26     33     26     66
D22V3, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             4              26
  CLUS_3             0              33
  CLUS_4             1              26
  CLUS_5             3              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        5      3      2
  RASA1 WILD-TYPE     73     82     45
D22V4, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             5              73
  CLUS_2             3              82
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        5      1      6      6
  RASA1 WILD-TYPE    128    109    157     91
D22V5, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             5             128
  CLUS_2             1             109
  CLUS_3             6             157
  CLUS_4             6              91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        7      6      5      0
  RASA1 WILD-TYPE    169     91    163     62
D22V6, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             169
  CLUS_2             6              91
  CLUS_3             5             163
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        4      4      4      4      2
  RASA1 WILD-TYPE     73    131    124     85     75
D22V7, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             4             131
  CLUS_3             4             124
  CLUS_4             4              85
  CLUS_5             2              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        9      4      5
  RASA1 WILD-TYPE    181    136    171
D22V8, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             4             136
  CLUS_3             5             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        7      6      3
  RASA1 WILD-TYPE    133    179    134
D22V9, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             133
  CLUS_2             6             179
  CLUS_3             3             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        7      4      5
  RASA1 WILD-TYPE    164     95    187
D22V10, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             164
  CLUS_2             4              95
  CLUS_3             5             187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = MAPK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK1 MUTATED        0      2      6      1
  MAPK1 WILD-TYPE    199    119    133     45
D23V1, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             0             199
  CLUS_2             2             119
  CLUS_3             6             133
  CLUS_4             1              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAPK1 MUTATED        2      1      2      1      3      0      0
  MAPK1 WILD-TYPE     84     81    100     87     70     75      5
D23V2, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             1              81
  CLUS_3             2             100
  CLUS_4             1              87
  CLUS_5             3              70
  CLUS_6             0              75
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK1 MUTATED        2      0      0      1      1
  MAPK1 WILD-TYPE     49     30     33     26     68
D23V3, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              30
  CLUS_3             0              33
  CLUS_4             1              26
  CLUS_5             1              68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        2      1      1
  MAPK1 WILD-TYPE     76     84     46
D23V4, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              76
  CLUS_2             1              84
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK1 MUTATED        1      3      3      1
  MAPK1 WILD-TYPE    132    107    160     96
D23V5, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             132
  CLUS_2             3             107
  CLUS_3             3             160
  CLUS_4             1              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK1 MUTATED        2      2      3      1
  MAPK1 WILD-TYPE    174     95    165     61
D23V6, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             2              95
  CLUS_3             3             165
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK1 MUTATED        0      3      5      0      1
  MAPK1 WILD-TYPE     77    132    123     89     76
D23V7, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             0              77
  CLUS_2             3             132
  CLUS_3             5             123
  CLUS_4             0              89
  CLUS_5             1              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        3      2      4
  MAPK1 WILD-TYPE    187    138    172
D23V8, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             3             187
  CLUS_2             2             138
  CLUS_3             4             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        2      4      3
  MAPK1 WILD-TYPE    138    181    134
D23V9, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2             138
  CLUS_2             4             181
  CLUS_3             3             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        3      0      6
  MAPK1 WILD-TYPE    168     99    186
D23V10, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             3             168
  CLUS_2             0              99
  CLUS_3             6             186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        4      3      2      0
  NUDT11 WILD-TYPE    195    118    137     46
D24V1, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              195
  CLUS_2              3              118
  CLUS_3              2              137
  CLUS_4              0               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        0      3      2      1      1      2      0
  NUDT11 WILD-TYPE     86     79    100     87     72     73      5
D24V2, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              3               79
  CLUS_3              2              100
  CLUS_4              1               87
  CLUS_5              1               72
  CLUS_6              2               73
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        3      0      0      1      1
  NUDT11 WILD-TYPE     48     30     33     26     68
D24V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               30
  CLUS_3              0               33
  CLUS_4              1               26
  CLUS_5              1               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        3      1      1
  NUDT11 WILD-TYPE     75     84     46
D24V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              1               84
  CLUS_3              1               46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        3      2      2      2
  NUDT11 WILD-TYPE    130    108    161     95
D24V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3              130
  CLUS_2              2              108
  CLUS_3              2              161
  CLUS_4              2               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        2      3      3      1
  NUDT11 WILD-TYPE    174     94    165     61
D24V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              174
  CLUS_2              3               94
  CLUS_3              3              165
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        1      4      1      2      1
  NUDT11 WILD-TYPE     76    131    127     87     76
D24V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1               76
  CLUS_2              4              131
  CLUS_3              1              127
  CLUS_4              2               87
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      2      5
  NUDT11 WILD-TYPE    188    138    171
D24V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              188
  CLUS_2              2              138
  CLUS_3              5              171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        3      2      2
  NUDT11 WILD-TYPE    137    183    135
D24V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3              137
  CLUS_2              2              183
  CLUS_3              2              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      1      4
  NUDT11 WILD-TYPE    169     98    188
D24V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              169
  CLUS_2              1               98
  CLUS_3              4              188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       10      5      2      0
  KDM6A WILD-TYPE    189    116    137     46
D25V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            10             189
  CLUS_2             5             116
  CLUS_3             2             137
  CLUS_4             0              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM6A MUTATED        0      5      4      3      2      3      0
  KDM6A WILD-TYPE     86     77     98     85     71     72      5
D25V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              86
  CLUS_2             5              77
  CLUS_3             4              98
  CLUS_4             3              85
  CLUS_5             2              71
  CLUS_6             3              72
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        1      0      3      1      0
  KDM6A WILD-TYPE     50     30     30     26     69
D25V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              30
  CLUS_3             3              30
  CLUS_4             1              26
  CLUS_5             0              69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        2      2      1
  KDM6A WILD-TYPE     76     83     46
D25V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              76
  CLUS_2             2              83
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        5      4      5      2
  KDM6A WILD-TYPE    128    106    158     95
D25V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             5             128
  CLUS_2             4             106
  CLUS_3             5             158
  CLUS_4             2              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        5      6      4      1
  KDM6A WILD-TYPE    171     91    164     61
D25V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             5             171
  CLUS_2             6              91
  CLUS_3             4             164
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        2      7      5      2      1
  KDM6A WILD-TYPE     75    128    123     87     76
D25V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              75
  CLUS_2             7             128
  CLUS_3             5             123
  CLUS_4             2              87
  CLUS_5             1              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        7      5      5
  KDM6A WILD-TYPE    183    135    171
D25V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             7             183
  CLUS_2             5             135
  CLUS_3             5             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        3      9      4
  KDM6A WILD-TYPE    137    176    133
D25V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3             137
  CLUS_2             9             176
  CLUS_3             4             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        5      6      5
  KDM6A WILD-TYPE    166     93    187
D25V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             5             166
  CLUS_2             6              93
  CLUS_3             5             187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        4      5      5      3
  RB1 WILD-TYPE    195    116    134     43
D26V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4           195
  CLUS_2           5           116
  CLUS_3           5           134
  CLUS_4           3            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RB1 MUTATED        1      3      2      3      5      2      1
  RB1 WILD-TYPE     85     79    100     85     68     73      4
D26V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            85
  CLUS_2           3            79
  CLUS_3           2           100
  CLUS_4           3            85
  CLUS_5           5            68
  CLUS_6           2            73
  CLUS_7           1             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        0      2      0      0      2
  RB1 WILD-TYPE     51     28     33     27     67
D26V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            51
  CLUS_2           2            28
  CLUS_3           0            33
  CLUS_4           0            27
  CLUS_5           2            67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      3      1
  RB1 WILD-TYPE     78     82     46
D26V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            78
  CLUS_2           3            82
  CLUS_3           1            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        1      4     11      1
  RB1 WILD-TYPE    132    106    152     96
D26V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1           132
  CLUS_2           4           106
  CLUS_3          11           152
  CLUS_4           1            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        4      6      4      3
  RB1 WILD-TYPE    172     91    164     59
D26V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4           172
  CLUS_2           6            91
  CLUS_3           4           164
  CLUS_4           3            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        4      4      7      0      1
  RB1 WILD-TYPE     73    131    121     89     76
D26V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4            73
  CLUS_2           4           131
  CLUS_3           7           121
  CLUS_4           0            89
  CLUS_5           1            76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        3      6      7
  RB1 WILD-TYPE    187    134    169
D26V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           187
  CLUS_2           6           134
  CLUS_3           7           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        2      5      8
  RB1 WILD-TYPE    138    180    129
D26V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2           138
  CLUS_2           5           180
  CLUS_3           8           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        3      3      9
  RB1 WILD-TYPE    168     96    183
D26V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           168
  CLUS_2           3            96
  CLUS_3           9           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = KEAP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KEAP1 MUTATED        6      8      7      1
  KEAP1 WILD-TYPE    193    113    132     45
D27V1, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             6             193
  CLUS_2             8             113
  CLUS_3             7             132
  CLUS_4             1              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KEAP1 MUTATED        3      5      4      8      0      2      0
  KEAP1 WILD-TYPE     83     77     98     80     73     73      5
D27V2, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             5              77
  CLUS_3             4              98
  CLUS_4             8              80
  CLUS_5             0              73
  CLUS_6             2              73
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KEAP1 MUTATED        2      2      2      0      3
  KEAP1 WILD-TYPE     49     28     31     27     66
D27V3, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              28
  CLUS_3             2              31
  CLUS_4             0              27
  CLUS_5             3              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        4      4      1
  KEAP1 WILD-TYPE     74     81     46
D27V4, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             4              74
  CLUS_2             4              81
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KEAP1 MUTATED        8      2      9      3
  KEAP1 WILD-TYPE    125    108    154     94
D27V5, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             8             125
  CLUS_2             2             108
  CLUS_3             9             154
  CLUS_4             3              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KEAP1 MUTATED        3     11      8      0
  KEAP1 WILD-TYPE    173     86    160     62
D27V6, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3             173
  CLUS_2            11              86
  CLUS_3             8             160
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KEAP1 MUTATED        3      4      8      4      3
  KEAP1 WILD-TYPE     74    131    120     85     74
D27V7, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             4             131
  CLUS_3             8             120
  CLUS_4             4              85
  CLUS_5             3              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        4     11      7
  KEAP1 WILD-TYPE    186    129    169
D27V8, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             4             186
  CLUS_2            11             129
  CLUS_3             7             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        6     10      3
  KEAP1 WILD-TYPE    134    175    134
D27V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             6             134
  CLUS_2            10             175
  CLUS_3             3             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KEAP1 MUTATED        4      5     10
  KEAP1 WILD-TYPE    167     94    182
D27V10, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             4             167
  CLUS_2             5              94
  CLUS_3            10             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = KRT17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT17 MUTATED        2      2      2      0
  KRT17 WILD-TYPE    197    119    137     46
D28V1, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             2             197
  CLUS_2             2             119
  CLUS_3             2             137
  CLUS_4             0              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT17 MUTATED        0      0      3      2      1      0      0
  KRT17 WILD-TYPE     86     82     99     86     72     75      5
D28V2, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             0              82
  CLUS_3             3              99
  CLUS_4             2              86
  CLUS_5             1              72
  CLUS_6             0              75
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT17 MUTATED        0      2      1      0      3
  KRT17 WILD-TYPE     51     28     32     27     66
D28V3, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              28
  CLUS_3             1              32
  CLUS_4             0              27
  CLUS_5             3              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT17 MUTATED        1      3      2
  KRT17 WILD-TYPE     77     82     45
D28V4, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             1              77
  CLUS_2             3              82
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT17 MUTATED        2      1      1      2
  KRT17 WILD-TYPE    131    109    162     95
D28V5, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             2             131
  CLUS_2             1             109
  CLUS_3             1             162
  CLUS_4             2              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT17 MUTATED        2      3      1      0
  KRT17 WILD-TYPE    174     94    167     62
D28V6, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             3              94
  CLUS_3             1             167
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT17 MUTATED        1      1      2      1      1
  KRT17 WILD-TYPE     76    134    126     88     76
D28V7, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             1              76
  CLUS_2             1             134
  CLUS_3             2             126
  CLUS_4             1              88
  CLUS_5             1              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT17 MUTATED        3      1      2
  KRT17 WILD-TYPE    187    139    174
D28V8, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             3             187
  CLUS_2             1             139
  CLUS_3             2             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT17 MUTATED        3      0      3
  KRT17 WILD-TYPE    137    185    134
D28V9, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             3             137
  CLUS_2             0             185
  CLUS_3             3             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT17 MUTATED        2      1      3
  KRT17 WILD-TYPE    169     98    189
D28V10, multiclass
        clus
vv       KRT17 MUTATED KRT17 WILD-TYPE
  CLUS_1             2             169
  CLUS_2             1              98
  CLUS_3             3             189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        3      1      4      2
  RHOA WILD-TYPE    196    120    135     44
D29V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            196
  CLUS_2            1            120
  CLUS_3            4            135
  CLUS_4            2             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHOA MUTATED        2      3      2      0      1      2      0
  RHOA WILD-TYPE     84     79    100     88     72     73      5
D29V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             84
  CLUS_2            3             79
  CLUS_3            2            100
  CLUS_4            0             88
  CLUS_5            1             72
  CLUS_6            2             73
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        0      0      0      0      3
  RHOA WILD-TYPE     51     30     33     27     66
D29V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             51
  CLUS_2            0             30
  CLUS_3            0             33
  CLUS_4            0             27
  CLUS_5            3             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        0      3      0
  RHOA WILD-TYPE     78     82     47
D29V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             78
  CLUS_2            3             82
  CLUS_3            0             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        3      2      3      2
  RHOA WILD-TYPE    130    108    160     95
D29V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            130
  CLUS_2            2            108
  CLUS_3            3            160
  CLUS_4            2             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        4      2      3      1
  RHOA WILD-TYPE    172     95    165     61
D29V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            172
  CLUS_2            2             95
  CLUS_3            3            165
  CLUS_4            1             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        1      3      2      3      1
  RHOA WILD-TYPE     76    132    126     86     76
D29V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             76
  CLUS_2            3            132
  CLUS_3            2            126
  CLUS_4            3             86
  CLUS_5            1             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      4      2
  RHOA WILD-TYPE    186    136    174
D29V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            186
  CLUS_2            4            136
  CLUS_3            2            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      3      3
  RHOA WILD-TYPE    136    182    134
D29V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            136
  CLUS_2            3            182
  CLUS_3            3            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      3      3
  RHOA WILD-TYPE    167     96    189
D29V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            167
  CLUS_2            3             96
  CLUS_3            3            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = PTPN14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        7      3      3      3
  PTPN14 WILD-TYPE    192    118    136     43
D30V1, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              7              192
  CLUS_2              3              118
  CLUS_3              3              136
  CLUS_4              3               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN14 MUTATED        0      4      8      2      0      2      0
  PTPN14 WILD-TYPE     86     78     94     86     73     73      5
D30V2, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              4               78
  CLUS_3              8               94
  CLUS_4              2               86
  CLUS_5              0               73
  CLUS_6              2               73
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN14 MUTATED        2      2      1      1      0
  PTPN14 WILD-TYPE     49     28     32     26     69
D30V3, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               28
  CLUS_3              1               32
  CLUS_4              1               26
  CLUS_5              0               69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        3      3      0
  PTPN14 WILD-TYPE     75     82     47
D30V4, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3               75
  CLUS_2              3               82
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        5      6      3      2
  PTPN14 WILD-TYPE    128    104    160     95
D30V5, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              5              128
  CLUS_2              6              104
  CLUS_3              3              160
  CLUS_4              2               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        4      4      7      1
  PTPN14 WILD-TYPE    172     93    161     61
D30V6, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4              172
  CLUS_2              4               93
  CLUS_3              7              161
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN14 MUTATED        2     10      1      2      1
  PTPN14 WILD-TYPE     75    125    127     87     76
D30V7, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2               75
  CLUS_2             10              125
  CLUS_3              1              127
  CLUS_4              2               87
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        4      6      6
  PTPN14 WILD-TYPE    186    134    170
D30V8, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4              186
  CLUS_2              6              134
  CLUS_3              6              170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        1     10      3
  PTPN14 WILD-TYPE    139    175    134
D30V9, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              1              139
  CLUS_2             10              175
  CLUS_3              3              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        3      5      6
  PTPN14 WILD-TYPE    168     94    186
D30V10, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3              168
  CLUS_2              5               94
  CLUS_3              6              186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = KRTAP5-5 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        3      0      1      0
  KRTAP5-5 WILD-TYPE    196    121    138     46
D31V1, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                3                196
  CLUS_2                0                121
  CLUS_3                1                138
  CLUS_4                0                 46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP5-5 MUTATED        1      1      1      0      0      1      0
  KRTAP5-5 WILD-TYPE     85     81    101     88     73     74      5
D31V2, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 85
  CLUS_2                1                 81
  CLUS_3                1                101
  CLUS_4                0                 88
  CLUS_5                0                 73
  CLUS_6                1                 74
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        1      0      0      0      2
  KRTAP5-5 WILD-TYPE     50     30     33     27     67
D31V3, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                0                 30
  CLUS_3                0                 33
  CLUS_4                0                 27
  CLUS_5                2                 67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        1      2      0
  KRTAP5-5 WILD-TYPE     77     83     47
D31V4, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 77
  CLUS_2                2                 83
  CLUS_3                0                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        0      1      0      3
  KRTAP5-5 WILD-TYPE    133    109    163     94
D31V5, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                133
  CLUS_2                1                109
  CLUS_3                0                163
  CLUS_4                3                 94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        3      0      1      0
  KRTAP5-5 WILD-TYPE    173     97    167     62
D31V6, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                3                173
  CLUS_2                0                 97
  CLUS_3                1                167
  CLUS_4                0                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        0      0      0      1      3
  KRTAP5-5 WILD-TYPE     77    135    128     88     74
D31V7, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                 77
  CLUS_2                0                135
  CLUS_3                0                128
  CLUS_4                1                 88
  CLUS_5                3                 74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        3      1      0
  KRTAP5-5 WILD-TYPE    187    139    176
D31V8, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                3                187
  CLUS_2                1                139
  CLUS_3                0                176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        1      2      1
  KRTAP5-5 WILD-TYPE    139    183    136
D31V9, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                139
  CLUS_2                2                183
  CLUS_3                1                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        3      0      1
  KRTAP5-5 WILD-TYPE    168     99    191
D31V10, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                3                168
  CLUS_2                0                 99
  CLUS_3                1                191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = ZNF623 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF623 MUTATED        3      4      3      1
  ZNF623 WILD-TYPE    196    117    136     45
D32V1, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              3              196
  CLUS_2              4              117
  CLUS_3              3              136
  CLUS_4              1               45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF623 MUTATED        1      2      5      1      2      1      0
  ZNF623 WILD-TYPE     85     80     97     87     71     74      5
D32V2, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              2               80
  CLUS_3              5               97
  CLUS_4              1               87
  CLUS_5              2               71
  CLUS_6              1               74
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF623 MUTATED        2      0      3      1      1
  ZNF623 WILD-TYPE     49     30     30     26     68
D32V3, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               30
  CLUS_3              3               30
  CLUS_4              1               26
  CLUS_5              1               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        4      1      2
  ZNF623 WILD-TYPE     74     84     45
D32V4, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              4               74
  CLUS_2              1               84
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF623 MUTATED        4      3      4      1
  ZNF623 WILD-TYPE    129    107    159     96
D32V5, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              4              129
  CLUS_2              3              107
  CLUS_3              4              159
  CLUS_4              1               96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF623 MUTATED        1      2      7      2
  ZNF623 WILD-TYPE    175     95    161     60
D32V6, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1              175
  CLUS_2              2               95
  CLUS_3              7              161
  CLUS_4              2               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF623 MUTATED        2      5      2      2      1
  ZNF623 WILD-TYPE     75    130    126     87     76
D32V7, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              5              130
  CLUS_3              2              126
  CLUS_4              2               87
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        1      6      5
  ZNF623 WILD-TYPE    189    134    171
D32V8, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              1              189
  CLUS_2              6              134
  CLUS_3              5              171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        2      3      1
  ZNF623 WILD-TYPE    138    182    136
D32V9, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              2              138
  CLUS_2              3              182
  CLUS_3              1              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF623 MUTATED        0      3      3
  ZNF623 WILD-TYPE    171     96    189
D32V10, multiclass
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  CLUS_1              0              171
  CLUS_2              3               96
  CLUS_3              3              189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = TIGD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD4 MUTATED        2      3      2      0
  TIGD4 WILD-TYPE    197    118    137     46
D33V1, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             2             197
  CLUS_2             3             118
  CLUS_3             2             137
  CLUS_4             0              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TIGD4 MUTATED        1      1      2      2      1      0      0
  TIGD4 WILD-TYPE     85     81    100     86     72     75      5
D33V2, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             1              81
  CLUS_3             2             100
  CLUS_4             2              86
  CLUS_5             1              72
  CLUS_6             0              75
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD4 MUTATED        1      0      1      1      1
  TIGD4 WILD-TYPE     50     30     32     26     68
D33V3, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              30
  CLUS_3             1              32
  CLUS_4             1              26
  CLUS_5             1              68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        2      1      1
  TIGD4 WILD-TYPE     76     84     46
D33V4, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             2              76
  CLUS_2             1              84
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD4 MUTATED        2      1      4      0
  TIGD4 WILD-TYPE    131    109    159     97
D33V5, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             2             131
  CLUS_2             1             109
  CLUS_3             4             159
  CLUS_4             0              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD4 MUTATED        1      2      4      0
  TIGD4 WILD-TYPE    175     95    164     62
D33V6, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             2              95
  CLUS_3             4             164
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD4 MUTATED        0      2      2      2      1
  TIGD4 WILD-TYPE     77    133    126     87     76
D33V7, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             0              77
  CLUS_2             2             133
  CLUS_3             2             126
  CLUS_4             2              87
  CLUS_5             1              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        1      3      3
  TIGD4 WILD-TYPE    189    137    173
D33V8, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             189
  CLUS_2             3             137
  CLUS_3             3             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        1      4      2
  TIGD4 WILD-TYPE    139    181    135
D33V9, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             139
  CLUS_2             4             181
  CLUS_3             2             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD4 MUTATED        1      2      4
  TIGD4 WILD-TYPE    170     97    188
D33V10, multiclass
        clus
vv       TIGD4 MUTATED TIGD4 WILD-TYPE
  CLUS_1             1             170
  CLUS_2             2              97
  CLUS_3             4             188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = NAP1L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        4      1      2      0
  NAP1L2 WILD-TYPE    195    120    137     46
D34V1, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              4              195
  CLUS_2              1              120
  CLUS_3              2              137
  CLUS_4              0               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L2 MUTATED        1      0      1      2      0      2      1
  NAP1L2 WILD-TYPE     85     82    101     86     73     73      4
D34V2, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              0               82
  CLUS_3              1              101
  CLUS_4              2               86
  CLUS_5              0               73
  CLUS_6              2               73
  CLUS_7              1                4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        0      0      0      1      2
  NAP1L2 WILD-TYPE     51     30     33     26     67
D34V3, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              0               30
  CLUS_3              0               33
  CLUS_4              1               26
  CLUS_5              2               67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        1      1      1
  NAP1L2 WILD-TYPE     77     84     46
D34V4, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               77
  CLUS_2              1               84
  CLUS_3              1               46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        3      2      1      0
  NAP1L2 WILD-TYPE    130    108    162     97
D34V5, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              3              130
  CLUS_2              2              108
  CLUS_3              1              162
  CLUS_4              0               97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      1      4      0
  NAP1L2 WILD-TYPE    175     96    164     62
D34V6, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              175
  CLUS_2              1               96
  CLUS_3              4              164
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        1      3      1      1      1
  NAP1L2 WILD-TYPE     76    132    127     88     76
D34V7, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               76
  CLUS_2              3              132
  CLUS_3              1              127
  CLUS_4              1               88
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      1      4
  NAP1L2 WILD-TYPE    188    139    172
D34V8, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              188
  CLUS_2              1              139
  CLUS_3              4              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        1      5      1
  NAP1L2 WILD-TYPE    139    180    136
D34V9, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              5              180
  CLUS_3              1              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      2      3
  NAP1L2 WILD-TYPE    169     97    189
D34V10, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              169
  CLUS_2              2               97
  CLUS_3              3              189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = CUL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        7      8      1      0
  CUL3 WILD-TYPE    192    113    138     46
D35V1, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            7            192
  CLUS_2            8            113
  CLUS_3            1            138
  CLUS_4            0             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL3 MUTATED        1      6      1      7      0      1      0
  CUL3 WILD-TYPE     85     76    101     81     73     74      5
D35V2, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            6             76
  CLUS_3            1            101
  CLUS_4            7             81
  CLUS_5            0             73
  CLUS_6            1             74
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL3 MUTATED        2      1      3      0      2
  CUL3 WILD-TYPE     49     29     30     27     67
D35V3, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             29
  CLUS_3            3             30
  CLUS_4            0             27
  CLUS_5            2             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        2      4      2
  CUL3 WILD-TYPE     76     81     45
D35V4, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            4             81
  CLUS_3            2             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        5      1      8      2
  CUL3 WILD-TYPE    128    109    155     95
D35V5, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            128
  CLUS_2            1            109
  CLUS_3            8            155
  CLUS_4            2             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        5      8      3      0
  CUL3 WILD-TYPE    171     89    165     62
D35V6, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            171
  CLUS_2            8             89
  CLUS_3            3            165
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL3 MUTATED        5      3      7      0      1
  CUL3 WILD-TYPE     72    132    121     89     76
D35V7, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5             72
  CLUS_2            3            132
  CLUS_3            7            121
  CLUS_4            0             89
  CLUS_5            1             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        7      4      5
  CUL3 WILD-TYPE    183    136    171
D35V8, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            7            183
  CLUS_2            4            136
  CLUS_3            5            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        2      7      4
  CUL3 WILD-TYPE    138    178    133
D35V9, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2            138
  CLUS_2            7            178
  CLUS_3            4            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        5      1      7
  CUL3 WILD-TYPE    166     98    185
D35V10, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            166
  CLUS_2            1             98
  CLUS_3            7            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = CREBBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        7     11     12      3
  CREBBP WILD-TYPE    192    110    127     43
D36V1, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              7              192
  CLUS_2             11              110
  CLUS_3             12              127
  CLUS_4              3               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CREBBP MUTATED        5      9      8      7      2      3      0
  CREBBP WILD-TYPE     81     73     94     81     71     72      5
D36V2, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5               81
  CLUS_2              9               73
  CLUS_3              8               94
  CLUS_4              7               81
  CLUS_5              2               71
  CLUS_6              3               72
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        4      1      4      0      3
  CREBBP WILD-TYPE     47     29     29     27     66
D36V3, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               29
  CLUS_3              4               29
  CLUS_4              0               27
  CLUS_5              3               66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        5      5      2
  CREBBP WILD-TYPE     73     80     45
D36V4, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5               73
  CLUS_2              5               80
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       15      4     11      4
  CREBBP WILD-TYPE    118    106    152     93
D36V5, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             15              118
  CLUS_2              4              106
  CLUS_3             11              152
  CLUS_4              4               93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        6     10     15      3
  CREBBP WILD-TYPE    170     87    153     59
D36V6, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6              170
  CLUS_2             10               87
  CLUS_3             15              153
  CLUS_4              3               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        7     11      7      4      5
  CREBBP WILD-TYPE     70    124    121     85     72
D36V7, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              7               70
  CLUS_2             11              124
  CLUS_3              7              121
  CLUS_4              4               85
  CLUS_5              5               72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        7     16     11
  CREBBP WILD-TYPE    183    124    165
D36V8, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              7              183
  CLUS_2             16              124
  CLUS_3             11              165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        6     18      7
  CREBBP WILD-TYPE    134    167    130
D36V9, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6              134
  CLUS_2             18              167
  CLUS_3              7              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        5     12     14
  CREBBP WILD-TYPE    166     87    178
D36V10, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5              166
  CLUS_2             12               87
  CLUS_3             14              178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = VEZF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        2      4      2      0
  VEZF1 WILD-TYPE    197    117    137     46
D37V1, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             2             197
  CLUS_2             4             117
  CLUS_3             2             137
  CLUS_4             0              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VEZF1 MUTATED        0      3      2      1      0      1      1
  VEZF1 WILD-TYPE     86     79    100     87     73     74      4
D37V2, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             3              79
  CLUS_3             2             100
  CLUS_4             1              87
  CLUS_5             0              73
  CLUS_6             1              74
  CLUS_7             1               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VEZF1 MUTATED        1      0      1      1      2
  VEZF1 WILD-TYPE     50     30     32     26     67
D37V3, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              30
  CLUS_3             1              32
  CLUS_4             1              26
  CLUS_5             2              67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        0      2      3
  VEZF1 WILD-TYPE     78     83     44
D37V4, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             0              78
  CLUS_2             2              83
  CLUS_3             3              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        3      1      3      1
  VEZF1 WILD-TYPE    130    109    160     96
D37V5, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             3             130
  CLUS_2             1             109
  CLUS_3             3             160
  CLUS_4             1              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        2      3      3      0
  VEZF1 WILD-TYPE    174     94    165     62
D37V6, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             3              94
  CLUS_3             3             165
  CLUS_4             0              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VEZF1 MUTATED        4      3      0      0      1
  VEZF1 WILD-TYPE     73    132    128     89     76
D37V7, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             3             132
  CLUS_3             0             128
  CLUS_4             0              89
  CLUS_5             1              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        3      4      1
  VEZF1 WILD-TYPE    187    136    175
D37V8, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             3             187
  CLUS_2             4             136
  CLUS_3             1             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        3      2      0
  VEZF1 WILD-TYPE    137    183    137
D37V9, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             3             137
  CLUS_2             2             183
  CLUS_3             0             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        3      1      1
  VEZF1 WILD-TYPE    168     98    191
D37V10, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             3             168
  CLUS_2             1              98
  CLUS_3             1             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = MLL4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        1      4     10      4
  MLL4 WILD-TYPE    198    117    129     42
D38V1, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1            198
  CLUS_2            4            117
  CLUS_3           10            129
  CLUS_4            4             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL4 MUTATED        2      2     11      2      1      0      1
  MLL4 WILD-TYPE     84     80     91     86     72     75      4
D38V2, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            2             80
  CLUS_3           11             91
  CLUS_4            2             86
  CLUS_5            1             72
  CLUS_6            0             75
  CLUS_7            1              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        2      0      1      0      3
  MLL4 WILD-TYPE     49     30     32     27     66
D38V3, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             30
  CLUS_3            1             32
  CLUS_4            0             27
  CLUS_5            3             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        2      4      0
  MLL4 WILD-TYPE     76     81     47
D38V4, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            4             81
  CLUS_3            0             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        4      8      5      1
  MLL4 WILD-TYPE    129    102    158     96
D38V5, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            4            129
  CLUS_2            8            102
  CLUS_3            5            158
  CLUS_4            1             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        5      3     10      0
  MLL4 WILD-TYPE    171     94    158     62
D38V6, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            5            171
  CLUS_2            3             94
  CLUS_3           10            158
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        2     12      2      2      1
  MLL4 WILD-TYPE     75    123    126     87     76
D38V7, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             75
  CLUS_2           12            123
  CLUS_3            2            126
  CLUS_4            2             87
  CLUS_5            1             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        7      6      6
  MLL4 WILD-TYPE    183    134    170
D38V8, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            7            183
  CLUS_2            6            134
  CLUS_3            6            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        2     10      3
  MLL4 WILD-TYPE    138    175    134
D38V9, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2            138
  CLUS_2           10            175
  CLUS_3            3            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        5      2      8
  MLL4 WILD-TYPE    166     97    184
D38V10, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            5            166
  CLUS_2            2             97
  CLUS_3            8            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        5      1     10      0
  IRS4 WILD-TYPE    194    120    129     46
D39V1, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            5            194
  CLUS_2            1            120
  CLUS_3           10            129
  CLUS_4            0             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        4      2      2      3      5      1      0
  IRS4 WILD-TYPE     82     80    100     85     68     74      5
D39V2, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4             82
  CLUS_2            2             80
  CLUS_3            2            100
  CLUS_4            3             85
  CLUS_5            5             68
  CLUS_6            1             74
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        1      1      1      3      1
  IRS4 WILD-TYPE     50     29     32     24     68
D39V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             29
  CLUS_3            1             32
  CLUS_4            3             24
  CLUS_5            1             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        3      2      2
  IRS4 WILD-TYPE     75     83     45
D39V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             75
  CLUS_2            2             83
  CLUS_3            2             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3      3      9      2
  IRS4 WILD-TYPE    130    107    154     95
D39V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            130
  CLUS_2            3            107
  CLUS_3            9            154
  CLUS_4            2             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3      5      4      5
  IRS4 WILD-TYPE    173     92    164     57
D39V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            173
  CLUS_2            5             92
  CLUS_3            4            164
  CLUS_4            5             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        4      4      6      1      2
  IRS4 WILD-TYPE     73    131    122     88     75
D39V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4             73
  CLUS_2            4            131
  CLUS_3            6            122
  CLUS_4            1             88
  CLUS_5            2             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      6      9
  IRS4 WILD-TYPE    188    134    167
D39V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            188
  CLUS_2            6            134
  CLUS_3            9            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      4      9
  IRS4 WILD-TYPE    138    181    128
D39V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            138
  CLUS_2            4            181
  CLUS_3            9            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        4      1     10
  IRS4 WILD-TYPE    167     98    182
D39V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4            167
  CLUS_2            1             98
  CLUS_3           10            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = HUWE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED       17      4     21      3
  HUWE1 WILD-TYPE    182    117    118     43
D40V1, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            17             182
  CLUS_2             4             117
  CLUS_3            21             118
  CLUS_4             3              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HUWE1 MUTATED        8      1     20      4      8      5      0
  HUWE1 WILD-TYPE     78     81     82     84     65     70      5
D40V2, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             8              78
  CLUS_2             1              81
  CLUS_3            20              82
  CLUS_4             4              84
  CLUS_5             8              65
  CLUS_6             5              70
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HUWE1 MUTATED        4      1      1      3      5
  HUWE1 WILD-TYPE     47     29     32     24     64
D40V3, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              29
  CLUS_3             1              32
  CLUS_4             3              24
  CLUS_5             5              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED        7      5      2
  HUWE1 WILD-TYPE     71     80     45
D40V4, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             7              71
  CLUS_2             5              80
  CLUS_3             2              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED       14     14     10      7
  HUWE1 WILD-TYPE    119     96    153     90
D40V5, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            14             119
  CLUS_2            14              96
  CLUS_3            10             153
  CLUS_4             7              90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED       13      5     23      4
  HUWE1 WILD-TYPE    163     92    145     58
D40V6, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            13             163
  CLUS_2             5              92
  CLUS_3            23             145
  CLUS_4             4              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HUWE1 MUTATED        5     13     10     11      7
  HUWE1 WILD-TYPE     72    122    118     78     70
D40V7, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             5              72
  CLUS_2            13             122
  CLUS_3            10             118
  CLUS_4            11              78
  CLUS_5             7              70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       15     11     20
  HUWE1 WILD-TYPE    175    129    156
D40V8, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            15             175
  CLUS_2            11             129
  CLUS_3            20             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       12     21     13
  HUWE1 WILD-TYPE    128    164    124
D40V9, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            12             128
  CLUS_2            21             164
  CLUS_3            13             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       14     11     21
  HUWE1 WILD-TYPE    157     88    171
D40V10, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            14             157
  CLUS_2            11              88
  CLUS_3            21             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = THSD7A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD7A MUTATED       15      8      6      3
  THSD7A WILD-TYPE    184    113    133     43
D41V1, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1             15              184
  CLUS_2              8              113
  CLUS_3              6              133
  CLUS_4              3               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THSD7A MUTATED        2     10      8      4      6      2      0
  THSD7A WILD-TYPE     84     72     94     84     67     73      5
D41V2, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              2               84
  CLUS_2             10               72
  CLUS_3              8               94
  CLUS_4              4               84
  CLUS_5              6               67
  CLUS_6              2               73
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD7A MUTATED        4      3      3      4      3
  THSD7A WILD-TYPE     47     27     30     23     66
D41V3, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              4               47
  CLUS_2              3               27
  CLUS_3              3               30
  CLUS_4              4               23
  CLUS_5              3               66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THSD7A MUTATED        7      4      6
  THSD7A WILD-TYPE     71     81     41
D41V4, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              7               71
  CLUS_2              4               81
  CLUS_3              6               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD7A MUTATED        9      7     16      0
  THSD7A WILD-TYPE    124    103    147     97
D41V5, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              9              124
  CLUS_2              7              103
  CLUS_3             16              147
  CLUS_4              0               97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD7A MUTATED        7     12      9      4
  THSD7A WILD-TYPE    169     85    159     58
D41V6, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              7              169
  CLUS_2             12               85
  CLUS_3              9              159
  CLUS_4              4               58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD7A MUTATED        7      9      7      6      1
  THSD7A WILD-TYPE     70    126    121     83     76
D41V7, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              7               70
  CLUS_2              9              126
  CLUS_3              7              121
  CLUS_4              6               83
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THSD7A MUTATED        5     11     14
  THSD7A WILD-TYPE    185    129    162
D41V8, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              5              185
  CLUS_2             11              129
  CLUS_3             14              162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THSD7A MUTATED        3     13     10
  THSD7A WILD-TYPE    137    172    127
D41V9, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              3              137
  CLUS_2             13              172
  CLUS_3             10              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THSD7A MUTATED        4      5     17
  THSD7A WILD-TYPE    167     94    175
D41V10, multiclass
        clus
vv       THSD7A MUTATED THSD7A WILD-TYPE
  CLUS_1              4              167
  CLUS_2              5               94
  CLUS_3             17              175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = C3ORF59 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF59 MUTATED        2      3      4      1
  C3ORF59 WILD-TYPE    197    118    135     45
D42V1, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               2               197
  CLUS_2               3               118
  CLUS_3               4               135
  CLUS_4               1                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C3ORF59 MUTATED        0      2      5      1      1      1      0
  C3ORF59 WILD-TYPE     86     80     97     87     72     74      5
D42V2, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               0                86
  CLUS_2               2                80
  CLUS_3               5                97
  CLUS_4               1                87
  CLUS_5               1                72
  CLUS_6               1                74
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF59 MUTATED        1      1      0      0      0
  C3ORF59 WILD-TYPE     50     29     33     27     69
D42V3, multiclass
[1] "Remove cluster labels:" "C3ORF59 MUTATED"       
clus
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                2               208 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5361 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6218        TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6222        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243        TCGA-CV-7245 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7263        TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7423        TCGA-CV-7424 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CV-7446 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7568        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-IQ-7630        TCGA-IQ-7632 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        2      0      0
  C3ORF59 WILD-TYPE     76     85     47
D42V4, multiclass
[1] "Remove cluster labels:" "C3ORF59 MUTATED"       
clus
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                2               208 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5361 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6218        TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6222        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243        TCGA-CV-7245 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7263        TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7423        TCGA-CV-7424 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CV-7446 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-CV-7568        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-IQ-7630        TCGA-IQ-7632 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF59 MUTATED        2      3      4      1
  C3ORF59 WILD-TYPE    131    107    159     96
D42V5, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               2               131
  CLUS_2               3               107
  CLUS_3               4               159
  CLUS_4               1                96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF59 MUTATED        4      1      5      0
  C3ORF59 WILD-TYPE    172     96    163     62
D42V6, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               4               172
  CLUS_2               1                96
  CLUS_3               5               163
  CLUS_4               0                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF59 MUTATED        1      3      2      2      2
  C3ORF59 WILD-TYPE     76    132    126     87     75
D42V7, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               1                76
  CLUS_2               3               132
  CLUS_3               2               126
  CLUS_4               2                87
  CLUS_5               2                75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        3      4      3
  C3ORF59 WILD-TYPE    187    136    173
D42V8, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3               187
  CLUS_2               4               136
  CLUS_3               3               173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        3      4      3
  C3ORF59 WILD-TYPE    137    181    134
D42V9, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3               137
  CLUS_2               4               181
  CLUS_3               3               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF59 MUTATED        3      4      3
  C3ORF59 WILD-TYPE    168     95    189
D42V10, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3               168
  CLUS_2               4                95
  CLUS_3               3               189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DYSF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYSF MUTATED        6      7      5      2
  DYSF WILD-TYPE    193    114    134     44
D43V1, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            6            193
  CLUS_2            7            114
  CLUS_3            5            134
  CLUS_4            2             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DYSF MUTATED        1      9      6      3      1      0      0
  DYSF WILD-TYPE     85     73     96     85     72     75      5
D43V2, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            1             85
  CLUS_2            9             73
  CLUS_3            6             96
  CLUS_4            3             85
  CLUS_5            1             72
  CLUS_6            0             75
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYSF MUTATED        1      1      3      1      2
  DYSF WILD-TYPE     50     29     30     26     67
D43V3, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             29
  CLUS_3            3             30
  CLUS_4            1             26
  CLUS_5            2             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DYSF MUTATED        2      4      2
  DYSF WILD-TYPE     76     81     45
D43V4, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            2             76
  CLUS_2            4             81
  CLUS_3            2             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYSF MUTATED        2      3     10      4
  DYSF WILD-TYPE    131    107    153     93
D43V5, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            2            131
  CLUS_2            3            107
  CLUS_3           10            153
  CLUS_4            4             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYSF MUTATED        4     10      4      1
  DYSF WILD-TYPE    172     87    164     61
D43V6, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            4            172
  CLUS_2           10             87
  CLUS_3            4            164
  CLUS_4            1             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYSF MUTATED        4      6      6      1      3
  DYSF WILD-TYPE     73    129    122     88     74
D43V7, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            4             73
  CLUS_2            6            129
  CLUS_3            6            122
  CLUS_4            1             88
  CLUS_5            3             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DYSF MUTATED        5      9      6
  DYSF WILD-TYPE    185    131    170
D43V8, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            5            185
  CLUS_2            9            131
  CLUS_3            6            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DYSF MUTATED        3      8      8
  DYSF WILD-TYPE    137    177    129
D43V9, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            3            137
  CLUS_2            8            177
  CLUS_3            8            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DYSF MUTATED        4      3     12
  DYSF WILD-TYPE    167     96    180
D43V10, multiclass
        clus
vv       DYSF MUTATED DYSF WILD-TYPE
  CLUS_1            4            167
  CLUS_2            3             96
  CLUS_3           12            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = ZNF233 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF233 MUTATED        2      2      3      0
  ZNF233 WILD-TYPE    197    119    136     46
D44V1, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              2              197
  CLUS_2              2              119
  CLUS_3              3              136
  CLUS_4              0               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF233 MUTATED        3      0      2      3      1      0      0
  ZNF233 WILD-TYPE     83     82    100     85     72     75      5
D44V2, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              0               82
  CLUS_3              2              100
  CLUS_4              3               85
  CLUS_5              1               72
  CLUS_6              0               75
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF233 MUTATED        0      0      2      1      2
  ZNF233 WILD-TYPE     51     30     31     26     67
D44V3, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              0               30
  CLUS_3              2               31
  CLUS_4              1               26
  CLUS_5              2               67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF233 MUTATED        1      4      0
  ZNF233 WILD-TYPE     77     81     47
D44V4, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              1               77
  CLUS_2              4               81
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF233 MUTATED        3      0      3      3
  ZNF233 WILD-TYPE    130    110    160     94
D44V5, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              3              130
  CLUS_2              0              110
  CLUS_3              3              160
  CLUS_4              3               94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF233 MUTATED        3      2      3      1
  ZNF233 WILD-TYPE    173     95    165     61
D44V6, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              3              173
  CLUS_2              2               95
  CLUS_3              3              165
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF233 MUTATED        2      1      5      0      1
  ZNF233 WILD-TYPE     75    134    123     89     76
D44V7, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              1              134
  CLUS_3              5              123
  CLUS_4              0               89
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF233 MUTATED        5      2      2
  ZNF233 WILD-TYPE    185    138    174
D44V8, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              5              185
  CLUS_2              2              138
  CLUS_3              2              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF233 MUTATED        4      1      4
  ZNF233 WILD-TYPE    136    184    133
D44V9, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              4              136
  CLUS_2              1              184
  CLUS_3              4              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF233 MUTATED        5      0      4
  ZNF233 WILD-TYPE    166     99    188
D44V10, multiclass
        clus
vv       ZNF233 MUTATED ZNF233 WILD-TYPE
  CLUS_1              5              166
  CLUS_2              0               99
  CLUS_3              4              188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = KIAA1267 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        0      3      6      2
  KIAA1267 WILD-TYPE    199    118    133     44
D45V1, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                0                199
  CLUS_2                3                118
  CLUS_3                6                133
  CLUS_4                2                 44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1267 MUTATED        1      1      5      2      1      1      0
  KIAA1267 WILD-TYPE     85     81     97     86     72     74      5
D45V2, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                 85
  CLUS_2                1                 81
  CLUS_3                5                 97
  CLUS_4                2                 86
  CLUS_5                1                 72
  CLUS_6                1                 74
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1267 MUTATED        3      0      0      0      0
  KIAA1267 WILD-TYPE     48     30     33     27     69
D45V3, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                0                 30
  CLUS_3                0                 33
  CLUS_4                0                 27
  CLUS_5                0                 69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        3      0      0
  KIAA1267 WILD-TYPE     75     85     47
D45V4, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                3                 75
  CLUS_2                0                 85
  CLUS_3                0                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        3      3      3      2
  KIAA1267 WILD-TYPE    130    107    160     95
D45V5, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                3                130
  CLUS_2                3                107
  CLUS_3                3                160
  CLUS_4                2                 95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        4      2      4      1
  KIAA1267 WILD-TYPE    172     95    164     61
D45V6, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                4                172
  CLUS_2                2                 95
  CLUS_3                4                164
  CLUS_4                1                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1267 MUTATED        0      5      2      3      1
  KIAA1267 WILD-TYPE     77    130    126     86     76
D45V7, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                0                 77
  CLUS_2                5                130
  CLUS_3                2                126
  CLUS_4                3                 86
  CLUS_5                1                 76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        5      3      3
  KIAA1267 WILD-TYPE    185    137    173
D45V8, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                5                185
  CLUS_2                3                137
  CLUS_3                3                173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        3      3      5
  KIAA1267 WILD-TYPE    137    182    132
D45V9, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                3                137
  CLUS_2                3                182
  CLUS_3                5                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        5      1      5
  KIAA1267 WILD-TYPE    166     98    187
D45V10, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                5                166
  CLUS_2                1                 98
  CLUS_3                5                187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = ASXL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        6      4      6      0
  ASXL1 WILD-TYPE    193    117    133     46
D46V1, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             6             193
  CLUS_2             4             117
  CLUS_3             6             133
  CLUS_4             0              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASXL1 MUTATED        3      2      3      4      2      2      0
  ASXL1 WILD-TYPE     83     80     99     84     71     73      5
D46V2, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             2              80
  CLUS_3             3              99
  CLUS_4             4              84
  CLUS_5             2              71
  CLUS_6             2              73
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL1 MUTATED        1      2      0      2      1
  ASXL1 WILD-TYPE     50     28     33     25     68
D46V3, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              28
  CLUS_3             0              33
  CLUS_4             2              25
  CLUS_5             1              68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        3      2      1
  ASXL1 WILD-TYPE     75     83     46
D46V4, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             3              75
  CLUS_2             2              83
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        7      5      4      0
  ASXL1 WILD-TYPE    126    105    159     97
D46V5, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             7             126
  CLUS_2             5             105
  CLUS_3             4             159
  CLUS_4             0              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        1      4     10      1
  ASXL1 WILD-TYPE    175     93    158     61
D46V6, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             4              93
  CLUS_3            10             158
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL1 MUTATED        4      4      2      6      0
  ASXL1 WILD-TYPE     73    131    126     83     77
D46V7, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             4             131
  CLUS_3             2             126
  CLUS_4             6              83
  CLUS_5             0              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        2      7      7
  ASXL1 WILD-TYPE    188    133    169
D46V8, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             2             188
  CLUS_2             7             133
  CLUS_3             7             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        3      7      6
  ASXL1 WILD-TYPE    137    178    131
D46V9, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             3             137
  CLUS_2             7             178
  CLUS_3             6             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        2      4     10
  ASXL1 WILD-TYPE    169     95    182
D46V10, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             2             169
  CLUS_2             4              95
  CLUS_3            10             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        7      4      1      0
  SMAD4 WILD-TYPE    192    117    138     46
D47V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7             192
  CLUS_2             4             117
  CLUS_3             1             138
  CLUS_4             0              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD4 MUTATED        1      1      4      2      2      2      1
  SMAD4 WILD-TYPE     85     81     98     86     71     73      4
D47V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             1              81
  CLUS_3             4              98
  CLUS_4             2              86
  CLUS_5             2              71
  CLUS_6             2              73
  CLUS_7             1               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        3      1      2      0      0
  SMAD4 WILD-TYPE     48     29     31     27     69
D47V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              29
  CLUS_3             2              31
  CLUS_4             0              27
  CLUS_5             0              69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        3      2      1
  SMAD4 WILD-TYPE     75     83     46
D47V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              75
  CLUS_2             2              83
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        2      3      3      5
  SMAD4 WILD-TYPE    131    107    160     92
D47V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             2             131
  CLUS_2             3             107
  CLUS_3             3             160
  CLUS_4             5              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        7      1      4      1
  SMAD4 WILD-TYPE    169     96    164     61
D47V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7             169
  CLUS_2             1              96
  CLUS_3             4             164
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        1      1      3      4      4
  SMAD4 WILD-TYPE     76    134    125     85     73
D47V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              76
  CLUS_2             1             134
  CLUS_3             3             125
  CLUS_4             4              85
  CLUS_5             4              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        7      3      3
  SMAD4 WILD-TYPE    183    137    173
D47V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             3             137
  CLUS_3             3             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        5      3      3
  SMAD4 WILD-TYPE    135    182    134
D47V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5             135
  CLUS_2             3             182
  CLUS_3             3             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        5      4      2
  SMAD4 WILD-TYPE    166     95    190
D47V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5             166
  CLUS_2             4              95
  CLUS_3             2             190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = GAGE2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        0      4      0      0
  GAGE2A WILD-TYPE    199    117    139     46
D48V1, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0              199
  CLUS_2              4              117
  CLUS_3              0              139
  CLUS_4              0               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAGE2A MUTATED        0      1      0      3      0      0      0
  GAGE2A WILD-TYPE     86     81    102     85     73     75      5
D48V2, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               86
  CLUS_2              1               81
  CLUS_3              0              102
  CLUS_4              3               85
  CLUS_5              0               73
  CLUS_6              0               75
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        0      0      1      1      1
  GAGE2A WILD-TYPE     51     30     32     26     68
D48V3, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               51
  CLUS_2              0               30
  CLUS_3              1               32
  CLUS_4              1               26
  CLUS_5              1               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      2      0
  GAGE2A WILD-TYPE     77     83     47
D48V4, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               77
  CLUS_2              2               83
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      0      2      1
  GAGE2A WILD-TYPE    132    110    161     96
D48V5, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              132
  CLUS_2              0              110
  CLUS_3              2              161
  CLUS_4              1               96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      2      1      0
  GAGE2A WILD-TYPE    175     95    167     62
D48V6, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              175
  CLUS_2              2               95
  CLUS_3              1              167
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        0      0      3      1      0
  GAGE2A WILD-TYPE     77    135    125     88     77
D48V7, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               77
  CLUS_2              0              135
  CLUS_3              3              125
  CLUS_4              1               88
  CLUS_5              0               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      2      1
  GAGE2A WILD-TYPE    189    138    175
D48V8, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              189
  CLUS_2              2              138
  CLUS_3              1              175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      2      1
  GAGE2A WILD-TYPE    139    183    136
D48V9, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              139
  CLUS_2              2              183
  CLUS_3              1              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      1      2
  GAGE2A WILD-TYPE    170     98    190
D48V10, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              170
  CLUS_2              1               98
  CLUS_3              2              190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      0      1      0
  EMG1 WILD-TYPE    197    121    138     46
D49V1, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            197
  CLUS_2            0            121
  CLUS_3            1            138
  CLUS_4            0             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        1      0      1      0      0      1      0
  EMG1 WILD-TYPE     85     82    101     88     73     74      5
D49V2, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            0             82
  CLUS_3            1            101
  CLUS_4            0             88
  CLUS_5            0             73
  CLUS_6            1             74
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        1      0      0      1      0
  EMG1 WILD-TYPE     50     30     33     26     69
D49V3, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            208 
    TCGA-BA-4074     TCGA-BA-4078     TCGA-BA-5149     TCGA-BA-5151 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-5152     TCGA-BA-5153     TCGA-BA-5555     TCGA-BA-5556 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-5557     TCGA-BA-5559     TCGA-BA-6869     TCGA-BA-6870 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-6871     TCGA-BA-6872     TCGA-BA-6873     TCGA-BB-4217 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4723     TCGA-CN-4725     TCGA-CN-4726     TCGA-CN-4727 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4728     TCGA-CN-4729     TCGA-CN-4730     TCGA-CN-4731 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4733     TCGA-CN-4734     TCGA-CN-4735     TCGA-CN-4736 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4737     TCGA-CN-4738     TCGA-CN-4739     TCGA-CN-4740 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4741     TCGA-CN-4742     TCGA-CN-5355     TCGA-CN-5356 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-5358     TCGA-CN-5359     TCGA-CN-5360     TCGA-CN-5361 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-5363     TCGA-CN-5364     TCGA-CN-5365     TCGA-CN-5366 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-5367     TCGA-CN-5370     TCGA-CN-5373     TCGA-CN-5374 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6010     TCGA-CN-6011     TCGA-CN-6012     TCGA-CN-6013 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6016     TCGA-CN-6017     TCGA-CN-6018     TCGA-CN-6019 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6020     TCGA-CN-6021     TCGA-CN-6022     TCGA-CN-6023 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6024     TCGA-CN-6988     TCGA-CN-6989     TCGA-CN-6992 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6994     TCGA-CN-6995     TCGA-CN-6996     TCGA-CN-6997 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6998     TCGA-CQ-5323     TCGA-CQ-5324     TCGA-CQ-5325 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329     TCGA-CQ-5330 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5334     TCGA-CQ-6218 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221     TCGA-CQ-6222 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6224     TCGA-CQ-6225     TCGA-CQ-6227     TCGA-CQ-6228 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6229     TCGA-CQ-7065     TCGA-CQ-7068     TCGA-CV-5430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434     TCGA-CV-5436 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441     TCGA-CV-5442 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966     TCGA-CV-5970 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976     TCGA-CV-5977 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6433     TCGA-CV-6436 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6441     TCGA-CV-6933     TCGA-CV-6934     TCGA-CV-6935 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6938     TCGA-CV-6939 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6940     TCGA-CV-6941     TCGA-CV-6942     TCGA-CV-6943 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6945     TCGA-CV-6948     TCGA-CV-6950     TCGA-CV-6951 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6952     TCGA-CV-6953     TCGA-CV-6954     TCGA-CV-6955 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6956     TCGA-CV-6959     TCGA-CV-6960     TCGA-CV-6961 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6962     TCGA-CV-7089     TCGA-CV-7090     TCGA-CV-7091 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7095     TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7101     TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7177     TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7235     TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7243     TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7250     TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7254 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7255     TCGA-CV-7261     TCGA-CV-7263     TCGA-CV-7406 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7407     TCGA-CV-7410     TCGA-CV-7411     TCGA-CV-7413 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7414     TCGA-CV-7415     TCGA-CV-7416     TCGA-CV-7418 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7421     TCGA-CV-7422     TCGA-CV-7423     TCGA-CV-7424 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7425     TCGA-CV-7427     TCGA-CV-7429     TCGA-CV-7430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7432     TCGA-CV-7433     TCGA-CV-7434     TCGA-CV-7435 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7437     TCGA-CV-7438     TCGA-CV-7440     TCGA-CV-7446 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7568     TCGA-CX-7085     TCGA-CX-7086     TCGA-CX-7219 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6515     TCGA-D6-6516     TCGA-D6-6517     TCGA-D6-6823 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6824     TCGA-D6-6825     TCGA-D6-6826     TCGA-D6-6827 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DQ-7591     TCGA-DQ-7592     TCGA-IQ-7630     TCGA-IQ-7632 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      0      0
  EMG1 WILD-TYPE     76     85     47
D49V4, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            208 
    TCGA-BA-4074     TCGA-BA-4078     TCGA-BA-5149     TCGA-BA-5151 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-5152     TCGA-BA-5153     TCGA-BA-5555     TCGA-BA-5556 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-5557     TCGA-BA-5559     TCGA-BA-6869     TCGA-BA-6870 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-6871     TCGA-BA-6872     TCGA-BA-6873     TCGA-BB-4217 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4723     TCGA-CN-4725     TCGA-CN-4726     TCGA-CN-4727 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4728     TCGA-CN-4729     TCGA-CN-4730     TCGA-CN-4731 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4733     TCGA-CN-4734     TCGA-CN-4735     TCGA-CN-4736 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4737     TCGA-CN-4738     TCGA-CN-4739     TCGA-CN-4740 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4741     TCGA-CN-4742     TCGA-CN-5355     TCGA-CN-5356 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-5358     TCGA-CN-5359     TCGA-CN-5360     TCGA-CN-5361 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-5363     TCGA-CN-5364     TCGA-CN-5365     TCGA-CN-5366 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-5367     TCGA-CN-5370     TCGA-CN-5373     TCGA-CN-5374 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6010     TCGA-CN-6011     TCGA-CN-6012     TCGA-CN-6013 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6016     TCGA-CN-6017     TCGA-CN-6018     TCGA-CN-6019 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6020     TCGA-CN-6021     TCGA-CN-6022     TCGA-CN-6023 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6024     TCGA-CN-6988     TCGA-CN-6989     TCGA-CN-6992 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6994     TCGA-CN-6995     TCGA-CN-6996     TCGA-CN-6997 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6998     TCGA-CQ-5323     TCGA-CQ-5324     TCGA-CQ-5325 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329     TCGA-CQ-5330 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5334     TCGA-CQ-6218 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221     TCGA-CQ-6222 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6224     TCGA-CQ-6225     TCGA-CQ-6227     TCGA-CQ-6228 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6229     TCGA-CQ-7065     TCGA-CQ-7068     TCGA-CV-5430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434     TCGA-CV-5436 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441     TCGA-CV-5442 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966     TCGA-CV-5970 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976     TCGA-CV-5977 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6433     TCGA-CV-6436 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6441     TCGA-CV-6933     TCGA-CV-6934     TCGA-CV-6935 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6938     TCGA-CV-6939 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6940     TCGA-CV-6941     TCGA-CV-6942     TCGA-CV-6943 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6945     TCGA-CV-6948     TCGA-CV-6950     TCGA-CV-6951 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6952     TCGA-CV-6953     TCGA-CV-6954     TCGA-CV-6955 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6956     TCGA-CV-6959     TCGA-CV-6960     TCGA-CV-6961 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6962     TCGA-CV-7089     TCGA-CV-7090     TCGA-CV-7091 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7095     TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7101     TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7177     TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7235     TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7243     TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7250     TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7254 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7255     TCGA-CV-7261     TCGA-CV-7263     TCGA-CV-7406 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7407     TCGA-CV-7410     TCGA-CV-7411     TCGA-CV-7413 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7414     TCGA-CV-7415     TCGA-CV-7416     TCGA-CV-7418 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7421     TCGA-CV-7422     TCGA-CV-7423     TCGA-CV-7424 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7425     TCGA-CV-7427     TCGA-CV-7429     TCGA-CV-7430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7432     TCGA-CV-7433     TCGA-CV-7434     TCGA-CV-7435 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7437     TCGA-CV-7438     TCGA-CV-7440     TCGA-CV-7446 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7568     TCGA-CX-7085     TCGA-CX-7086     TCGA-CX-7219 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6515     TCGA-D6-6516     TCGA-D6-6517     TCGA-D6-6823 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6824     TCGA-D6-6825     TCGA-D6-6826     TCGA-D6-6827 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DQ-7591     TCGA-DQ-7592     TCGA-IQ-7630     TCGA-IQ-7632 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      2      0      0
  EMG1 WILD-TYPE    132    108    163     97
D49V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            132
  CLUS_2            2            108
  CLUS_3            0            163
  CLUS_4            0             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      0      2      0
  EMG1 WILD-TYPE    175     97    166     62
D49V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            175
  CLUS_2            0             97
  CLUS_3            2            166
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        0      2      0      1      0
  EMG1 WILD-TYPE     77    133    128     88     77
D49V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0             77
  CLUS_2            2            133
  CLUS_3            0            128
  CLUS_4            1             88
  CLUS_5            0             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      1      1
  EMG1 WILD-TYPE    189    139    175
D49V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            189
  CLUS_2            1            139
  CLUS_3            1            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      0      2
  EMG1 WILD-TYPE    140    185    135
D49V9, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            460 
    TCGA-4P-AA8J     TCGA-BA-5149     TCGA-BA-5152     TCGA-BA-5555 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-5556     TCGA-BA-5557     TCGA-BA-5558     TCGA-BA-5559 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-6868     TCGA-BA-6869     TCGA-BA-6870     TCGA-BA-6871 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-6872     TCGA-BA-6873     TCGA-BA-7269     TCGA-BA-A4IF 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A4IG     TCGA-BA-A4IH     TCGA-BA-A4II     TCGA-BA-A6D8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A6DA     TCGA-BA-A6DB     TCGA-BA-A6DD     TCGA-BA-A6DE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A6DF     TCGA-BA-A6DG     TCGA-BA-A6DI     TCGA-BA-A6DJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A6DL     TCGA-BA-A8YP     TCGA-BB-4217     TCGA-BB-4227 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BB-7870     TCGA-BB-8596     TCGA-BB-8601     TCGA-BB-A5HU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BB-A5HY     TCGA-BB-A5HZ     TCGA-BB-A6UO     TCGA-C9-A47Z 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-C9-A480     TCGA-CN-4733     TCGA-CN-4738     TCGA-CN-4739 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4742     TCGA-CN-5358     TCGA-CN-5370     TCGA-CN-6010 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6011     TCGA-CN-6012     TCGA-CN-6013     TCGA-CN-6016 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6017     TCGA-CN-6018     TCGA-CN-6019     TCGA-CN-6020 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6021     TCGA-CN-6022     TCGA-CN-6023     TCGA-CN-6024 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6988     TCGA-CN-6992     TCGA-CN-6994     TCGA-CN-6995 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6996     TCGA-CN-6997     TCGA-CN-6998     TCGA-CN-A497 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A498     TCGA-CN-A499     TCGA-CN-A49A     TCGA-CN-A49B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A49C     TCGA-CN-A63T     TCGA-CN-A63U     TCGA-CN-A63V 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A63W     TCGA-CN-A63Y     TCGA-CN-A640     TCGA-CN-A641 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A642     TCGA-CN-A6UY     TCGA-CN-A6V1     TCGA-CN-A6V3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A6V6     TCGA-CQ-5323     TCGA-CQ-5324     TCGA-CQ-5325 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329     TCGA-CQ-5330 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5333     TCGA-CQ-5334 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6218     TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6222     TCGA-CQ-6223     TCGA-CQ-6224     TCGA-CQ-6225 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6228     TCGA-CQ-6229     TCGA-CQ-7063     TCGA-CQ-7064 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-7065     TCGA-CQ-7068     TCGA-CQ-7069     TCGA-CQ-7071 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-7072     TCGA-CQ-A4C6     TCGA-CQ-A4C7     TCGA-CQ-A4C9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-A4CA     TCGA-CQ-A4CB     TCGA-CQ-A4CD     TCGA-CQ-A4CE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-A4CG     TCGA-CQ-A4CH     TCGA-CQ-A4CI     TCGA-CR-5243 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-5247     TCGA-CR-5248     TCGA-CR-5249     TCGA-CR-5250 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6467     TCGA-CR-6470     TCGA-CR-6471     TCGA-CR-6472 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6473     TCGA-CR-6474     TCGA-CR-6477     TCGA-CR-6478 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6480     TCGA-CR-6481     TCGA-CR-6484     TCGA-CR-6487 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6488     TCGA-CR-6491     TCGA-CR-6492     TCGA-CR-6493 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7364     TCGA-CR-7365     TCGA-CR-7368     TCGA-CR-7369 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7370     TCGA-CR-7371     TCGA-CR-7372     TCGA-CR-7373 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7374     TCGA-CR-7376     TCGA-CR-7377     TCGA-CR-7379 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7380     TCGA-CR-7382     TCGA-CR-7383     TCGA-CR-7385 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7386     TCGA-CR-7388     TCGA-CR-7389     TCGA-CR-7390 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7391     TCGA-CR-7392     TCGA-CR-7393     TCGA-CR-7394 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7395     TCGA-CR-7397     TCGA-CR-7398     TCGA-CR-7399 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7401     TCGA-CR-7402     TCGA-CR-7404     TCGA-CV-5430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434     TCGA-CV-5435 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5436     TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5442     TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5970     TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5977     TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6433 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6436     TCGA-CV-6441     TCGA-CV-6934     TCGA-CV-6935 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6939     TCGA-CV-6940 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6941     TCGA-CV-6942     TCGA-CV-6943     TCGA-CV-6945 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6948     TCGA-CV-6950     TCGA-CV-6951     TCGA-CV-6952 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6953     TCGA-CV-6954     TCGA-CV-6955     TCGA-CV-6956 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6959     TCGA-CV-6960     TCGA-CV-6961     TCGA-CV-6962 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7089     TCGA-CV-7090     TCGA-CV-7091     TCGA-CV-7095 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100     TCGA-CV-7101 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104     TCGA-CV-7177 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183     TCGA-CV-7235 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242     TCGA-CV-7243 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248     TCGA-CV-7250 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7255     TCGA-CV-7261 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7263     TCGA-CV-7406     TCGA-CV-7407     TCGA-CV-7410 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7411     TCGA-CV-7413     TCGA-CV-7414     TCGA-CV-7415 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7416     TCGA-CV-7418     TCGA-CV-7421     TCGA-CV-7422 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7423     TCGA-CV-7424     TCGA-CV-7425     TCGA-CV-7427 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7429     TCGA-CV-7430     TCGA-CV-7432     TCGA-CV-7433 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7434     TCGA-CV-7435     TCGA-CV-7437     TCGA-CV-7438 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7440     TCGA-CV-7446     TCGA-CV-7568     TCGA-CV-A45O 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A45P     TCGA-CV-A45Q     TCGA-CV-A45R     TCGA-CV-A45T 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A45U     TCGA-CV-A45V     TCGA-CV-A45W     TCGA-CV-A45X 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A45Y     TCGA-CV-A45Z     TCGA-CV-A460     TCGA-CV-A461 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A463     TCGA-CV-A464     TCGA-CV-A465     TCGA-CV-A468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A6JD     TCGA-CV-A6JE     TCGA-CV-A6JM     TCGA-CV-A6JN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A6JO     TCGA-CV-A6JT     TCGA-CV-A6JU     TCGA-CV-A6JY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A6JZ     TCGA-CV-A6K0     TCGA-CV-A6K1     TCGA-CV-A6K2 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CX-7082     TCGA-CX-7085     TCGA-CX-7086     TCGA-CX-7219 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CX-A4AQ     TCGA-D6-6515     TCGA-D6-6516     TCGA-D6-6517 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6823     TCGA-D6-6824     TCGA-D6-6825     TCGA-D6-6826 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6827     TCGA-D6-8568     TCGA-D6-8569     TCGA-D6-A4Z9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-A4ZB     TCGA-D6-A6EK     TCGA-D6-A6EM     TCGA-D6-A6EN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-A6EO     TCGA-D6-A6EP     TCGA-D6-A6EQ     TCGA-D6-A6ES 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-A74Q     TCGA-DQ-5624     TCGA-DQ-5625     TCGA-DQ-5629 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DQ-5630     TCGA-DQ-5631     TCGA-DQ-7588     TCGA-DQ-7591 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DQ-7592     TCGA-DQ-7593     TCGA-DQ-7596     TCGA-F7-7848 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F7-8298     TCGA-F7-8489     TCGA-F7-A50G     TCGA-F7-A50I 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F7-A50J     TCGA-F7-A61S     TCGA-F7-A61V     TCGA-F7-A61W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F7-A620     TCGA-F7-A622     TCGA-F7-A623     TCGA-F7-A624 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-H7-7774     TCGA-H7-8501     TCGA-H7-8502     TCGA-H7-A6C4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-H7-A6C5     TCGA-H7-A76A     TCGA-HD-7229     TCGA-HD-7753 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HD-7754     TCGA-HD-7831     TCGA-HD-7832     TCGA-HD-8224 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HD-8314     TCGA-HD-8635     TCGA-HD-A4C1     TCGA-HD-A633 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HD-A634     TCGA-HD-A6HZ     TCGA-HD-A6I0     TCGA-IQ-7630 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IQ-7631     TCGA-IQ-7632     TCGA-IQ-A61E     TCGA-IQ-A61G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IQ-A61H     TCGA-IQ-A61I     TCGA-IQ-A61J     TCGA-IQ-A61K 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IQ-A61L     TCGA-IQ-A61O     TCGA-IQ-A6SH     TCGA-KU-A66S 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KU-A66T     TCGA-KU-A6H7     TCGA-KU-A6H8     TCGA-MT-A51W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MT-A51X     TCGA-MT-A67A     TCGA-MT-A67D     TCGA-MT-A67F 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MT-A67G     TCGA-MT-A7BN     TCGA-MZ-A5BI     TCGA-MZ-A6I9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MZ-A7D7     TCGA-P3-A5Q5     TCGA-P3-A5Q6     TCGA-P3-A5QA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P3-A5QE     TCGA-P3-A5QF     TCGA-P3-A6SW     TCGA-P3-A6SX 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P3-A6T0     TCGA-P3-A6T2     TCGA-P3-A6T3     TCGA-P3-A6T4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P3-A6T5     TCGA-P3-A6T6     TCGA-P3-A6T7     TCGA-P3-A6T8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A64Z     TCGA-QK-A652     TCGA-QK-A6IF     TCGA-QK-A6IG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A6IH     TCGA-QK-A6II     TCGA-QK-A6IJ     TCGA-QK-A6V9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A6VB     TCGA-QK-A6VC     TCGA-QK-A8Z7     TCGA-QK-A8Z8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A8Z9     TCGA-QK-A8ZA     TCGA-QK-A8ZB     TCGA-QK-AA3J 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-AA3K     TCGA-RS-A6TO     TCGA-RS-A6TP     TCGA-T2-A6WX 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-T2-A6WZ     TCGA-T2-A6X0     TCGA-T2-A6X2     TCGA-T3-A92M 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-T3-A92N     TCGA-TN-A7HI     TCGA-TN-A7HJ     TCGA-TN-A7HL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A718     TCGA-UF-A719     TCGA-UF-A71A     TCGA-UF-A71B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A71D     TCGA-UF-A71E     TCGA-UF-A7J9     TCGA-UF-A7JA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A7JC     TCGA-UF-A7JD     TCGA-UF-A7JF     TCGA-UF-A7JH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A7JJ     TCGA-UF-A7JK     TCGA-UF-A7JO     TCGA-UF-A7JS 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A7JT     TCGA-UF-A7JV     TCGA-UP-A6WW     TCGA-WA-A7H4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      0      1
  EMG1 WILD-TYPE    170     99    191
D49V10, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            460 
    TCGA-4P-AA8J     TCGA-BA-5149     TCGA-BA-5152     TCGA-BA-5555 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-5556     TCGA-BA-5557     TCGA-BA-5558     TCGA-BA-5559 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-6868     TCGA-BA-6869     TCGA-BA-6870     TCGA-BA-6871 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-6872     TCGA-BA-6873     TCGA-BA-7269     TCGA-BA-A4IF 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A4IG     TCGA-BA-A4IH     TCGA-BA-A4II     TCGA-BA-A6D8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A6DA     TCGA-BA-A6DB     TCGA-BA-A6DD     TCGA-BA-A6DE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A6DF     TCGA-BA-A6DG     TCGA-BA-A6DI     TCGA-BA-A6DJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BA-A6DL     TCGA-BA-A8YP     TCGA-BB-4217     TCGA-BB-4227 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BB-7870     TCGA-BB-8596     TCGA-BB-8601     TCGA-BB-A5HU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BB-A5HY     TCGA-BB-A5HZ     TCGA-BB-A6UO     TCGA-C9-A47Z 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-C9-A480     TCGA-CN-4733     TCGA-CN-4738     TCGA-CN-4739 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-4742     TCGA-CN-5358     TCGA-CN-5370     TCGA-CN-6010 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6011     TCGA-CN-6012     TCGA-CN-6013     TCGA-CN-6016 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6017     TCGA-CN-6018     TCGA-CN-6019     TCGA-CN-6020 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6021     TCGA-CN-6022     TCGA-CN-6023     TCGA-CN-6024 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6988     TCGA-CN-6992     TCGA-CN-6994     TCGA-CN-6995 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-6996     TCGA-CN-6997     TCGA-CN-6998     TCGA-CN-A497 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A498     TCGA-CN-A499     TCGA-CN-A49A     TCGA-CN-A49B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A49C     TCGA-CN-A63T     TCGA-CN-A63U     TCGA-CN-A63V 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A63W     TCGA-CN-A63Y     TCGA-CN-A640     TCGA-CN-A641 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A642     TCGA-CN-A6UY     TCGA-CN-A6V1     TCGA-CN-A6V3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CN-A6V6     TCGA-CQ-5323     TCGA-CQ-5324     TCGA-CQ-5325 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329     TCGA-CQ-5330 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5333     TCGA-CQ-5334 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6218     TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6222     TCGA-CQ-6223     TCGA-CQ-6224     TCGA-CQ-6225 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-6228     TCGA-CQ-6229     TCGA-CQ-7063     TCGA-CQ-7064 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-7065     TCGA-CQ-7068     TCGA-CQ-7069     TCGA-CQ-7071 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-7072     TCGA-CQ-A4C6     TCGA-CQ-A4C7     TCGA-CQ-A4C9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-A4CA     TCGA-CQ-A4CB     TCGA-CQ-A4CD     TCGA-CQ-A4CE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CQ-A4CG     TCGA-CQ-A4CH     TCGA-CQ-A4CI     TCGA-CR-5243 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-5247     TCGA-CR-5248     TCGA-CR-5249     TCGA-CR-5250 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6467     TCGA-CR-6470     TCGA-CR-6471     TCGA-CR-6472 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6473     TCGA-CR-6474     TCGA-CR-6477     TCGA-CR-6478 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6480     TCGA-CR-6481     TCGA-CR-6484     TCGA-CR-6487 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-6488     TCGA-CR-6491     TCGA-CR-6492     TCGA-CR-6493 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7364     TCGA-CR-7365     TCGA-CR-7368     TCGA-CR-7369 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7370     TCGA-CR-7371     TCGA-CR-7372     TCGA-CR-7373 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7374     TCGA-CR-7376     TCGA-CR-7377     TCGA-CR-7379 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7380     TCGA-CR-7382     TCGA-CR-7383     TCGA-CR-7385 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7386     TCGA-CR-7388     TCGA-CR-7389     TCGA-CR-7390 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7391     TCGA-CR-7392     TCGA-CR-7393     TCGA-CR-7394 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7395     TCGA-CR-7397     TCGA-CR-7398     TCGA-CR-7399 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CR-7401     TCGA-CR-7402     TCGA-CR-7404     TCGA-CV-5430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434     TCGA-CV-5435 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5436     TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5442     TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5970     TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-5977     TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6433 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6436     TCGA-CV-6441     TCGA-CV-6934     TCGA-CV-6935 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6939     TCGA-CV-6940 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6941     TCGA-CV-6942     TCGA-CV-6943     TCGA-CV-6945 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6948     TCGA-CV-6950     TCGA-CV-6951     TCGA-CV-6952 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6953     TCGA-CV-6954     TCGA-CV-6955     TCGA-CV-6956 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-6959     TCGA-CV-6960     TCGA-CV-6961     TCGA-CV-6962 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7089     TCGA-CV-7090     TCGA-CV-7091     TCGA-CV-7095 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100     TCGA-CV-7101 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104     TCGA-CV-7177 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183     TCGA-CV-7235 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242     TCGA-CV-7243 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248     TCGA-CV-7250 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7255     TCGA-CV-7261 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7263     TCGA-CV-7406     TCGA-CV-7407     TCGA-CV-7410 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7411     TCGA-CV-7413     TCGA-CV-7414     TCGA-CV-7415 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7416     TCGA-CV-7418     TCGA-CV-7421     TCGA-CV-7422 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7423     TCGA-CV-7424     TCGA-CV-7425     TCGA-CV-7427 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7429     TCGA-CV-7430     TCGA-CV-7432     TCGA-CV-7433 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7434     TCGA-CV-7435     TCGA-CV-7437     TCGA-CV-7438 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-7440     TCGA-CV-7446     TCGA-CV-7568     TCGA-CV-A45O 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A45P     TCGA-CV-A45Q     TCGA-CV-A45R     TCGA-CV-A45T 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A45U     TCGA-CV-A45V     TCGA-CV-A45W     TCGA-CV-A45X 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A45Y     TCGA-CV-A45Z     TCGA-CV-A460     TCGA-CV-A461 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A463     TCGA-CV-A464     TCGA-CV-A465     TCGA-CV-A468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A6JD     TCGA-CV-A6JE     TCGA-CV-A6JM     TCGA-CV-A6JN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A6JO     TCGA-CV-A6JT     TCGA-CV-A6JU     TCGA-CV-A6JY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CV-A6JZ     TCGA-CV-A6K0     TCGA-CV-A6K1     TCGA-CV-A6K2 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CX-7082     TCGA-CX-7085     TCGA-CX-7086     TCGA-CX-7219 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CX-A4AQ     TCGA-D6-6515     TCGA-D6-6516     TCGA-D6-6517 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6823     TCGA-D6-6824     TCGA-D6-6825     TCGA-D6-6826 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-6827     TCGA-D6-8568     TCGA-D6-8569     TCGA-D6-A4Z9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-A4ZB     TCGA-D6-A6EK     TCGA-D6-A6EM     TCGA-D6-A6EN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-A6EO     TCGA-D6-A6EP     TCGA-D6-A6EQ     TCGA-D6-A6ES 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-D6-A74Q     TCGA-DQ-5624     TCGA-DQ-5625     TCGA-DQ-5629 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DQ-5630     TCGA-DQ-5631     TCGA-DQ-7588     TCGA-DQ-7591 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DQ-7592     TCGA-DQ-7593     TCGA-DQ-7596     TCGA-F7-7848 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F7-8298     TCGA-F7-8489     TCGA-F7-A50G     TCGA-F7-A50I 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F7-A50J     TCGA-F7-A61S     TCGA-F7-A61V     TCGA-F7-A61W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F7-A620     TCGA-F7-A622     TCGA-F7-A623     TCGA-F7-A624 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-H7-7774     TCGA-H7-8501     TCGA-H7-8502     TCGA-H7-A6C4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-H7-A6C5     TCGA-H7-A76A     TCGA-HD-7229     TCGA-HD-7753 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HD-7754     TCGA-HD-7831     TCGA-HD-7832     TCGA-HD-8224 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HD-8314     TCGA-HD-8635     TCGA-HD-A4C1     TCGA-HD-A633 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HD-A634     TCGA-HD-A6HZ     TCGA-HD-A6I0     TCGA-IQ-7630 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IQ-7631     TCGA-IQ-7632     TCGA-IQ-A61E     TCGA-IQ-A61G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IQ-A61H     TCGA-IQ-A61I     TCGA-IQ-A61J     TCGA-IQ-A61K 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IQ-A61L     TCGA-IQ-A61O     TCGA-IQ-A6SH     TCGA-KU-A66S 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KU-A66T     TCGA-KU-A6H7     TCGA-KU-A6H8     TCGA-MT-A51W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MT-A51X     TCGA-MT-A67A     TCGA-MT-A67D     TCGA-MT-A67F 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MT-A67G     TCGA-MT-A7BN     TCGA-MZ-A5BI     TCGA-MZ-A6I9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MZ-A7D7     TCGA-P3-A5Q5     TCGA-P3-A5Q6     TCGA-P3-A5QA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P3-A5QE     TCGA-P3-A5QF     TCGA-P3-A6SW     TCGA-P3-A6SX 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P3-A6T0     TCGA-P3-A6T2     TCGA-P3-A6T3     TCGA-P3-A6T4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P3-A6T5     TCGA-P3-A6T6     TCGA-P3-A6T7     TCGA-P3-A6T8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A64Z     TCGA-QK-A652     TCGA-QK-A6IF     TCGA-QK-A6IG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A6IH     TCGA-QK-A6II     TCGA-QK-A6IJ     TCGA-QK-A6V9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A6VB     TCGA-QK-A6VC     TCGA-QK-A8Z7     TCGA-QK-A8Z8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-A8Z9     TCGA-QK-A8ZA     TCGA-QK-A8ZB     TCGA-QK-AA3J 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QK-AA3K     TCGA-RS-A6TO     TCGA-RS-A6TP     TCGA-T2-A6WX 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-T2-A6WZ     TCGA-T2-A6X0     TCGA-T2-A6X2     TCGA-T3-A92M 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-T3-A92N     TCGA-TN-A7HI     TCGA-TN-A7HJ     TCGA-TN-A7HL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A718     TCGA-UF-A719     TCGA-UF-A71A     TCGA-UF-A71B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A71D     TCGA-UF-A71E     TCGA-UF-A7J9     TCGA-UF-A7JA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A7JC     TCGA-UF-A7JD     TCGA-UF-A7JF     TCGA-UF-A7JH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A7JJ     TCGA-UF-A7JK     TCGA-UF-A7JO     TCGA-UF-A7JS 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UF-A7JT     TCGA-UF-A7JV     TCGA-UP-A6WW     TCGA-WA-A7H4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 

Clustering(50) Variable = PIK3R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        3      3      2      0
  PIK3R1 WILD-TYPE    196    118    137     46
D50V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              196
  CLUS_2              3              118
  CLUS_3              2              137
  CLUS_4              0               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3R1 MUTATED        1      2      2      0      3      0      0
  PIK3R1 WILD-TYPE     85     80    100     88     70     75      5
D50V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              2               80
  CLUS_3              2              100
  CLUS_4              0               88
  CLUS_5              3               70
  CLUS_6              0               75
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        0      0      0      1      0
  PIK3R1 WILD-TYPE     51     30     33     26     69
D50V3, multiclass
[1] "Remove cluster labels:" "PIK3R1 MUTATED"        
clus
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               1              209 
      TCGA-BA-4074       TCGA-BA-4078       TCGA-BA-5149       TCGA-BA-5151 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-BA-5152       TCGA-BA-5153       TCGA-BA-5555       TCGA-BA-5556 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-BA-5557       TCGA-BA-5559       TCGA-BA-6869       TCGA-BA-6870 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-BA-6871       TCGA-BA-6872       TCGA-BA-6873       TCGA-BB-4217 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4723       TCGA-CN-4725       TCGA-CN-4726       TCGA-CN-4727 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4728       TCGA-CN-4730       TCGA-CN-4731       TCGA-CN-4733 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4734       TCGA-CN-4735       TCGA-CN-4736       TCGA-CN-4737 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4738       TCGA-CN-4739       TCGA-CN-4740       TCGA-CN-4741 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4742       TCGA-CN-5355       TCGA-CN-5356       TCGA-CN-5358 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-5359       TCGA-CN-5360       TCGA-CN-5361       TCGA-CN-5363 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-5364       TCGA-CN-5365       TCGA-CN-5366       TCGA-CN-5367 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-5369       TCGA-CN-5370       TCGA-CN-5373       TCGA-CN-5374 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6010       TCGA-CN-6011       TCGA-CN-6012       TCGA-CN-6013 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6016       TCGA-CN-6017       TCGA-CN-6018       TCGA-CN-6019 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6020       TCGA-CN-6021       TCGA-CN-6022       TCGA-CN-6023 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6024       TCGA-CN-6988       TCGA-CN-6989       TCGA-CN-6992 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6994       TCGA-CN-6995       TCGA-CN-6996       TCGA-CN-6997 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6998       TCGA-CQ-5323       TCGA-CQ-5324       TCGA-CQ-5325 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-5326       TCGA-CQ-5327       TCGA-CQ-5329       TCGA-CQ-5330 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-5331       TCGA-CQ-5332       TCGA-CQ-5334       TCGA-CQ-6218 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-6219       TCGA-CQ-6220       TCGA-CQ-6221       TCGA-CQ-6222 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-6224       TCGA-CQ-6225       TCGA-CQ-6227       TCGA-CQ-6228 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-6229       TCGA-CQ-7065       TCGA-CQ-7068       TCGA-CV-5430 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5431       TCGA-CV-5432       TCGA-CV-5434       TCGA-CV-5436 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5439       TCGA-CV-5440       TCGA-CV-5441       TCGA-CV-5442 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5443       TCGA-CV-5444       TCGA-CV-5966       TCGA-CV-5970 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5971       TCGA-CV-5973       TCGA-CV-5976       TCGA-CV-5977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5978       TCGA-CV-5979       TCGA-CV-6003       TCGA-CV-6433 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6436       TCGA-CV-6441       TCGA-CV-6933       TCGA-CV-6934 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6935       TCGA-CV-6936       TCGA-CV-6937       TCGA-CV-6938 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6939       TCGA-CV-6940       TCGA-CV-6941       TCGA-CV-6942 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6943       TCGA-CV-6945       TCGA-CV-6948       TCGA-CV-6950 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6951       TCGA-CV-6952       TCGA-CV-6953       TCGA-CV-6954 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6955       TCGA-CV-6956       TCGA-CV-6959       TCGA-CV-6960 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6961       TCGA-CV-6962       TCGA-CV-7089       TCGA-CV-7090 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7091       TCGA-CV-7095       TCGA-CV-7097       TCGA-CV-7099 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7100       TCGA-CV-7101       TCGA-CV-7102       TCGA-CV-7103 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7104       TCGA-CV-7177       TCGA-CV-7178       TCGA-CV-7180 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7183       TCGA-CV-7235       TCGA-CV-7236       TCGA-CV-7238 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7242       TCGA-CV-7243       TCGA-CV-7245       TCGA-CV-7247 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7248       TCGA-CV-7250       TCGA-CV-7252       TCGA-CV-7253 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7254       TCGA-CV-7255       TCGA-CV-7261       TCGA-CV-7263 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7406       TCGA-CV-7407       TCGA-CV-7410       TCGA-CV-7411 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7413       TCGA-CV-7414       TCGA-CV-7415       TCGA-CV-7416 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7418       TCGA-CV-7421       TCGA-CV-7422       TCGA-CV-7423 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7424       TCGA-CV-7425       TCGA-CV-7427       TCGA-CV-7429 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7430       TCGA-CV-7432       TCGA-CV-7433       TCGA-CV-7434 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7435       TCGA-CV-7437       TCGA-CV-7438       TCGA-CV-7440 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7446       TCGA-CV-7568       TCGA-CX-7085       TCGA-CX-7086 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CX-7219       TCGA-D6-6515       TCGA-D6-6516       TCGA-D6-6517 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-D6-6823       TCGA-D6-6824       TCGA-D6-6825       TCGA-D6-6826 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-D6-6827       TCGA-DQ-7591       TCGA-DQ-7592       TCGA-IQ-7630 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-IQ-7632 
"PIK3R1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        1      0      0
  PIK3R1 WILD-TYPE     77     85     47
D50V4, multiclass
[1] "Remove cluster labels:" "PIK3R1 MUTATED"        
clus
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               1              209 
      TCGA-BA-4074       TCGA-BA-4078       TCGA-BA-5149       TCGA-BA-5151 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-BA-5152       TCGA-BA-5153       TCGA-BA-5555       TCGA-BA-5556 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-BA-5557       TCGA-BA-5559       TCGA-BA-6869       TCGA-BA-6870 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-BA-6871       TCGA-BA-6872       TCGA-BA-6873       TCGA-BB-4217 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4723       TCGA-CN-4725       TCGA-CN-4726       TCGA-CN-4727 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4728       TCGA-CN-4730       TCGA-CN-4731       TCGA-CN-4733 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4734       TCGA-CN-4735       TCGA-CN-4736       TCGA-CN-4737 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4738       TCGA-CN-4739       TCGA-CN-4740       TCGA-CN-4741 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-4742       TCGA-CN-5355       TCGA-CN-5356       TCGA-CN-5358 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-5359       TCGA-CN-5360       TCGA-CN-5361       TCGA-CN-5363 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-5364       TCGA-CN-5365       TCGA-CN-5366       TCGA-CN-5367 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-5369       TCGA-CN-5370       TCGA-CN-5373       TCGA-CN-5374 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6010       TCGA-CN-6011       TCGA-CN-6012       TCGA-CN-6013 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6016       TCGA-CN-6017       TCGA-CN-6018       TCGA-CN-6019 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6020       TCGA-CN-6021       TCGA-CN-6022       TCGA-CN-6023 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6024       TCGA-CN-6988       TCGA-CN-6989       TCGA-CN-6992 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6994       TCGA-CN-6995       TCGA-CN-6996       TCGA-CN-6997 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CN-6998       TCGA-CQ-5323       TCGA-CQ-5324       TCGA-CQ-5325 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-5326       TCGA-CQ-5327       TCGA-CQ-5329       TCGA-CQ-5330 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-5331       TCGA-CQ-5332       TCGA-CQ-5334       TCGA-CQ-6218 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-6219       TCGA-CQ-6220       TCGA-CQ-6221       TCGA-CQ-6222 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-6224       TCGA-CQ-6225       TCGA-CQ-6227       TCGA-CQ-6228 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CQ-6229       TCGA-CQ-7065       TCGA-CQ-7068       TCGA-CV-5430 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5431       TCGA-CV-5432       TCGA-CV-5434       TCGA-CV-5436 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5439       TCGA-CV-5440       TCGA-CV-5441       TCGA-CV-5442 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5443       TCGA-CV-5444       TCGA-CV-5966       TCGA-CV-5970 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5971       TCGA-CV-5973       TCGA-CV-5976       TCGA-CV-5977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-5978       TCGA-CV-5979       TCGA-CV-6003       TCGA-CV-6433 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6436       TCGA-CV-6441       TCGA-CV-6933       TCGA-CV-6934 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6935       TCGA-CV-6936       TCGA-CV-6937       TCGA-CV-6938 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6939       TCGA-CV-6940       TCGA-CV-6941       TCGA-CV-6942 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6943       TCGA-CV-6945       TCGA-CV-6948       TCGA-CV-6950 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6951       TCGA-CV-6952       TCGA-CV-6953       TCGA-CV-6954 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6955       TCGA-CV-6956       TCGA-CV-6959       TCGA-CV-6960 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-6961       TCGA-CV-6962       TCGA-CV-7089       TCGA-CV-7090 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7091       TCGA-CV-7095       TCGA-CV-7097       TCGA-CV-7099 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7100       TCGA-CV-7101       TCGA-CV-7102       TCGA-CV-7103 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7104       TCGA-CV-7177       TCGA-CV-7178       TCGA-CV-7180 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7183       TCGA-CV-7235       TCGA-CV-7236       TCGA-CV-7238 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7242       TCGA-CV-7243       TCGA-CV-7245       TCGA-CV-7247 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7248       TCGA-CV-7250       TCGA-CV-7252       TCGA-CV-7253 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7254       TCGA-CV-7255       TCGA-CV-7261       TCGA-CV-7263 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7406       TCGA-CV-7407       TCGA-CV-7410       TCGA-CV-7411 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7413       TCGA-CV-7414       TCGA-CV-7415       TCGA-CV-7416 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7418       TCGA-CV-7421       TCGA-CV-7422       TCGA-CV-7423 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7424       TCGA-CV-7425       TCGA-CV-7427       TCGA-CV-7429 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7430       TCGA-CV-7432       TCGA-CV-7433       TCGA-CV-7434 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7435       TCGA-CV-7437       TCGA-CV-7438       TCGA-CV-7440 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CV-7446       TCGA-CV-7568       TCGA-CX-7085       TCGA-CX-7086 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-CX-7219       TCGA-D6-6515       TCGA-D6-6516       TCGA-D6-6517 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-D6-6823       TCGA-D6-6824       TCGA-D6-6825       TCGA-D6-6826 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-D6-6827       TCGA-DQ-7591       TCGA-DQ-7592       TCGA-IQ-7630 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-IQ-7632 
"PIK3R1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        0      1      6      1
  PIK3R1 WILD-TYPE    133    109    157     96
D50V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              0              133
  CLUS_2              1              109
  CLUS_3              6              157
  CLUS_4              1               96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        1      2      2      3
  PIK3R1 WILD-TYPE    175     95    166     59
D50V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              1              175
  CLUS_2              2               95
  CLUS_3              2              166
  CLUS_4              3               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        0      2      4      2      0
  PIK3R1 WILD-TYPE     77    133    124     87     77
D50V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              0               77
  CLUS_2              2              133
  CLUS_3              4              124
  CLUS_4              2               87
  CLUS_5              0               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        1      3      4
  PIK3R1 WILD-TYPE    189    137    172
D50V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              1              189
  CLUS_2              3              137
  CLUS_3              4              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        2      3      2
  PIK3R1 WILD-TYPE    138    182    135
D50V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2              138
  CLUS_2              3              182
  CLUS_3              2              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        1      1      5
  PIK3R1 WILD-TYPE    170     98    187
D50V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              1              170
  CLUS_2              1               98
  CLUS_3              5              187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = KRTAP5-7 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-7 MUTATED        2      2      1      0
  KRTAP5-7 WILD-TYPE    197    119    138     46
D51V1, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                2                197
  CLUS_2                2                119
  CLUS_3                1                138
  CLUS_4                0                 46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP5-7 MUTATED        1      1      1      0      1      1      0
  KRTAP5-7 WILD-TYPE     85     81    101     88     72     74      5
D51V2, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                1                 85
  CLUS_2                1                 81
  CLUS_3                1                101
  CLUS_4                0                 88
  CLUS_5                1                 72
  CLUS_6                1                 74
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-7 MUTATED        0      0      1      1      0
  KRTAP5-7 WILD-TYPE     51     30     32     26     69
D51V3, multiclass
[1] "Remove cluster labels:" "KRTAP5-7 MUTATED"      
clus
  KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE 
                 2                208 
        TCGA-BA-4074         TCGA-BA-4078         TCGA-BA-5149 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-5559         TCGA-BA-6869         TCGA-BA-6870 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-6871         TCGA-BA-6872         TCGA-BA-6873 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BB-4217         TCGA-CN-4723         TCGA-CN-4725 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4731         TCGA-CN-4733 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4734         TCGA-CN-4735         TCGA-CN-4736 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5361 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5332         TCGA-CQ-5334 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6219         TCGA-CQ-6220 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6222         TCGA-CQ-6224 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7065         TCGA-CQ-7068 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5430         TCGA-CV-5431         TCGA-CV-5432 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5434         TCGA-CV-5436         TCGA-CV-5439 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7410         TCGA-CV-7411 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7429 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7430         TCGA-CV-7432         TCGA-CV-7433 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7434         TCGA-CV-7435         TCGA-CV-7437 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7438         TCGA-CV-7440         TCGA-CV-7446 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7568         TCGA-CX-7085         TCGA-CX-7086 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-IQ-7630 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-IQ-7632 
"KRTAP5-7 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-7 MUTATED        1      0      1
  KRTAP5-7 WILD-TYPE     77     85     46
D51V4, multiclass
[1] "Remove cluster labels:" "KRTAP5-7 MUTATED"      
clus
  KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE 
                 2                208 
        TCGA-BA-4074         TCGA-BA-4078         TCGA-BA-5149 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-5559         TCGA-BA-6869         TCGA-BA-6870 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BA-6871         TCGA-BA-6872         TCGA-BA-6873 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-BB-4217         TCGA-CN-4723         TCGA-CN-4725 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4731         TCGA-CN-4733 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4734         TCGA-CN-4735         TCGA-CN-4736 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5361 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5332         TCGA-CQ-5334 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6219         TCGA-CQ-6220 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6222         TCGA-CQ-6224 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7065         TCGA-CQ-7068 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5430         TCGA-CV-5431         TCGA-CV-5432 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5434         TCGA-CV-5436         TCGA-CV-5439 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7410         TCGA-CV-7411 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7429 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7430         TCGA-CV-7432         TCGA-CV-7433 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7434         TCGA-CV-7435         TCGA-CV-7437 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7438         TCGA-CV-7440         TCGA-CV-7446 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CV-7568         TCGA-CX-7085         TCGA-CX-7086 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-IQ-7630 
"KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" "KRTAP5-7 WILD-TYPE" 
        TCGA-IQ-7632 
"KRTAP5-7 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-7 MUTATED        1      2      2      0
  KRTAP5-7 WILD-TYPE    132    108    161     97
D51V5, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                1                132
  CLUS_2                2                108
  CLUS_3                2                161
  CLUS_4                0                 97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-7 MUTATED        0      1      3      1
  KRTAP5-7 WILD-TYPE    176     96    165     61
D51V6, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                0                176
  CLUS_2                1                 96
  CLUS_3                3                165
  CLUS_4                1                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-7 MUTATED        0      2      1      2      0
  KRTAP5-7 WILD-TYPE     77    133    127     87     77
D51V7, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                0                 77
  CLUS_2                2                133
  CLUS_3                1                127
  CLUS_4                2                 87
  CLUS_5                0                 77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-7 MUTATED        0      4      1
  KRTAP5-7 WILD-TYPE    190    136    175
D51V8, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                0                190
  CLUS_2                4                136
  CLUS_3                1                175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-7 MUTATED        1      1      2
  KRTAP5-7 WILD-TYPE    139    184    135
D51V9, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                1                139
  CLUS_2                1                184
  CLUS_3                2                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-7 MUTATED        1      0      3
  KRTAP5-7 WILD-TYPE    170     99    189
D51V10, multiclass
        clus
vv       KRTAP5-7 MUTATED KRTAP5-7 WILD-TYPE
  CLUS_1                1                170
  CLUS_2                0                 99
  CLUS_3                3                189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = SLC9A6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A6 MUTATED        4      0      0      1
  SLC9A6 WILD-TYPE    195    121    139     45
D52V1, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              4              195
  CLUS_2              0              121
  CLUS_3              0              139
  CLUS_4              1               45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC9A6 MUTATED        0      0      2      0      0      3      0
  SLC9A6 WILD-TYPE     86     82    100     88     73     72      5
D52V2, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              0               82
  CLUS_3              2              100
  CLUS_4              0               88
  CLUS_5              0               73
  CLUS_6              3               72
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A6 MUTATED        1      0      0      0      2
  SLC9A6 WILD-TYPE     50     30     33     27     67
D52V3, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               30
  CLUS_3              0               33
  CLUS_4              0               27
  CLUS_5              2               67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        1      0      2
  SLC9A6 WILD-TYPE     77     85     45
D52V4, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              1               77
  CLUS_2              0               85
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A6 MUTATED        0      3      0      2
  SLC9A6 WILD-TYPE    133    107    163     95
D52V5, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              0              133
  CLUS_2              3              107
  CLUS_3              0              163
  CLUS_4              2               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A6 MUTATED        4      0      1      0
  SLC9A6 WILD-TYPE    172     97    167     62
D52V6, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              4              172
  CLUS_2              0               97
  CLUS_3              1              167
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A6 MUTATED        1      1      0      2      1
  SLC9A6 WILD-TYPE     76    134    128     87     76
D52V7, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              1               76
  CLUS_2              1              134
  CLUS_3              0              128
  CLUS_4              2               87
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        4      0      1
  SLC9A6 WILD-TYPE    186    140    175
D52V8, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              4              186
  CLUS_2              0              140
  CLUS_3              1              175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        3      1      1
  SLC9A6 WILD-TYPE    137    184    136
D52V9, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              3              137
  CLUS_2              1              184
  CLUS_3              1              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A6 MUTATED        4      1      0
  SLC9A6 WILD-TYPE    167     98    192
D52V10, multiclass
        clus
vv       SLC9A6 MUTATED SLC9A6 WILD-TYPE
  CLUS_1              4              167
  CLUS_2              1               98
  CLUS_3              0              192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = ELF4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        2      2      2      1
  ELF4 WILD-TYPE    197    119    137     45
D53V1, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            2            197
  CLUS_2            2            119
  CLUS_3            2            137
  CLUS_4            1             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ELF4 MUTATED        1      1      2      0      2      1      0
  ELF4 WILD-TYPE     85     81    100     88     71     74      5
D53V2, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            1             81
  CLUS_3            2            100
  CLUS_4            0             88
  CLUS_5            2             71
  CLUS_6            1             74
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF4 MUTATED        2      0      1      0      0
  ELF4 WILD-TYPE     49     30     32     27     69
D53V3, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             30
  CLUS_3            1             32
  CLUS_4            0             27
  CLUS_5            0             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        2      0      1
  ELF4 WILD-TYPE     76     85     46
D53V4, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            2             76
  CLUS_2            0             85
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        1      2      3      1
  ELF4 WILD-TYPE    132    108    160     96
D53V5, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1            132
  CLUS_2            2            108
  CLUS_3            3            160
  CLUS_4            1             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        2      2      2      1
  ELF4 WILD-TYPE    174     95    166     61
D53V6, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            2            174
  CLUS_2            2             95
  CLUS_3            2            166
  CLUS_4            1             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF4 MUTATED        1      0      1      3      2
  ELF4 WILD-TYPE     76    135    127     86     75
D53V7, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1             76
  CLUS_2            0            135
  CLUS_3            1            127
  CLUS_4            3             86
  CLUS_5            2             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        3      1      3
  ELF4 WILD-TYPE    187    139    173
D53V8, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            3            187
  CLUS_2            1            139
  CLUS_3            3            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        3      1      3
  ELF4 WILD-TYPE    137    184    134
D53V9, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            3            137
  CLUS_2            1            184
  CLUS_3            3            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        4      1      2
  ELF4 WILD-TYPE    167     98    190
D53V10, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            4            167
  CLUS_2            1             98
  CLUS_3            2            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = CTCF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        4      1     10      0
  CTCF WILD-TYPE    195    120    129     46
D54V1, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            195
  CLUS_2            1            120
  CLUS_3           10            129
  CLUS_4            0             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTCF MUTATED        1      3      9      0      0      2      0
  CTCF WILD-TYPE     85     79     93     88     73     73      5
D54V2, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             85
  CLUS_2            3             79
  CLUS_3            9             93
  CLUS_4            0             88
  CLUS_5            0             73
  CLUS_6            2             73
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        2      1      1      0      4
  CTCF WILD-TYPE     49     29     32     27     65
D54V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             29
  CLUS_3            1             32
  CLUS_4            0             27
  CLUS_5            4             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        2      5      1
  CTCF WILD-TYPE     76     80     46
D54V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             76
  CLUS_2            5             80
  CLUS_3            1             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        4      5      3      2
  CTCF WILD-TYPE    129    105    160     95
D54V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            129
  CLUS_2            5            105
  CLUS_3            3            160
  CLUS_4            2             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        4      3      7      0
  CTCF WILD-TYPE    172     94    161     62
D54V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            172
  CLUS_2            3             94
  CLUS_3            7            161
  CLUS_4            0             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        1      6      4      3      1
  CTCF WILD-TYPE     76    129    124     86     76
D54V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             76
  CLUS_2            6            129
  CLUS_3            4            124
  CLUS_4            3             86
  CLUS_5            1             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        7      4      4
  CTCF WILD-TYPE    183    136    172
D54V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            7            183
  CLUS_2            4            136
  CLUS_3            4            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        4      5      4
  CTCF WILD-TYPE    136    180    133
D54V9, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            136
  CLUS_2            5            180
  CLUS_3            4            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        6      3      4
  CTCF WILD-TYPE    165     96    188
D54V10, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            6            165
  CLUS_2            3             96
  CLUS_3            4            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = HNRNPL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPL MUTATED        5      1      3      2
  HNRNPL WILD-TYPE    194    120    136     44
D55V1, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              5              194
  CLUS_2              1              120
  CLUS_3              3              136
  CLUS_4              2               44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNRNPL MUTATED        3      3      4      1      0      0      0
  HNRNPL WILD-TYPE     83     79     98     87     73     75      5
D55V2, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              3               83
  CLUS_2              3               79
  CLUS_3              4               98
  CLUS_4              1               87
  CLUS_5              0               73
  CLUS_6              0               75
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPL MUTATED        1      0      1      2      1
  HNRNPL WILD-TYPE     50     30     32     25     68
D55V3, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               30
  CLUS_3              1               32
  CLUS_4              2               25
  CLUS_5              1               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPL MUTATED        2      1      2
  HNRNPL WILD-TYPE     76     84     45
D55V4, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              2               76
  CLUS_2              1               84
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPL MUTATED        3      4      3      1
  HNRNPL WILD-TYPE    130    106    160     96
D55V5, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              3              130
  CLUS_2              4              106
  CLUS_3              3              160
  CLUS_4              1               96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPL MUTATED        6      3      2      0
  HNRNPL WILD-TYPE    170     94    166     62
D55V6, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              6              170
  CLUS_2              3               94
  CLUS_3              2              166
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPL MUTATED        3      4      0      3      1
  HNRNPL WILD-TYPE     74    131    128     86     76
D55V7, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              3               74
  CLUS_2              4              131
  CLUS_3              0              128
  CLUS_4              3               86
  CLUS_5              1               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPL MUTATED        5      6      0
  HNRNPL WILD-TYPE    185    134    176
D55V8, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              5              185
  CLUS_2              6              134
  CLUS_3              0              176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPL MUTATED        5      2      3
  HNRNPL WILD-TYPE    135    183    134
D55V9, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              5              135
  CLUS_2              2              183
  CLUS_3              3              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HNRNPL MUTATED        4      3      3
  HNRNPL WILD-TYPE    167     96    189
D55V10, multiclass
        clus
vv       HNRNPL MUTATED HNRNPL WILD-TYPE
  CLUS_1              4              167
  CLUS_2              3               96
  CLUS_3              3              189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = ZFP36L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        5      2      0      1
  ZFP36L2 WILD-TYPE    194    119    139     45
D56V1, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               5               194
  CLUS_2               2               119
  CLUS_3               0               139
  CLUS_4               1                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFP36L2 MUTATED        0      2      1      3      0      1      1
  ZFP36L2 WILD-TYPE     86     80    101     85     73     74      4
D56V2, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                86
  CLUS_2               2                80
  CLUS_3               1               101
  CLUS_4               3                85
  CLUS_5               0                73
  CLUS_6               1                74
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        1      1      0      1      1
  ZFP36L2 WILD-TYPE     50     29     33     26     68
D56V3, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                29
  CLUS_3               0                33
  CLUS_4               1                26
  CLUS_5               1                68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        3      1      0
  ZFP36L2 WILD-TYPE     75     84     47
D56V4, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               3                75
  CLUS_2               1                84
  CLUS_3               0                47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        3      1      3      1
  ZFP36L2 WILD-TYPE    130    109    160     96
D56V5, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               3               130
  CLUS_2               1               109
  CLUS_3               3               160
  CLUS_4               1                96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        2      3      3      0
  ZFP36L2 WILD-TYPE    174     94    165     62
D56V6, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2               174
  CLUS_2               3                94
  CLUS_3               3               165
  CLUS_4               0                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        2      2      1      3      0
  ZFP36L2 WILD-TYPE     75    133    127     86     77
D56V7, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2                75
  CLUS_2               2               133
  CLUS_3               1               127
  CLUS_4               3                86
  CLUS_5               0                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        2      2      4
  ZFP36L2 WILD-TYPE    188    138    172
D56V8, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2               188
  CLUS_2               2               138
  CLUS_3               4               172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        2      2      2
  ZFP36L2 WILD-TYPE    138    183    135
D56V9, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2               138
  CLUS_2               2               183
  CLUS_3               2               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        2      2      2
  ZFP36L2 WILD-TYPE    169     97    190
D56V10, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2               169
  CLUS_2               2                97
  CLUS_3               2               190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = MYH9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH9 MUTATED        8      2      9      2
  MYH9 WILD-TYPE    191    119    130     44
D57V1, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            8            191
  CLUS_2            2            119
  CLUS_3            9            130
  CLUS_4            2             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH9 MUTATED        4      2      8      2      4      1      0
  MYH9 WILD-TYPE     82     80     94     86     69     74      5
D57V2, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            4             82
  CLUS_2            2             80
  CLUS_3            8             94
  CLUS_4            2             86
  CLUS_5            4             69
  CLUS_6            1             74
  CLUS_7            0              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH9 MUTATED        3      3      2      1      0
  MYH9 WILD-TYPE     48     27     31     26     69
D57V3, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            3             27
  CLUS_3            2             31
  CLUS_4            1             26
  CLUS_5            0             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        3      3      3
  MYH9 WILD-TYPE     75     82     44
D57V4, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            3             75
  CLUS_2            3             82
  CLUS_3            3             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH9 MUTATED        6      4      6      5
  MYH9 WILD-TYPE    127    106    157     92
D57V5, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            6            127
  CLUS_2            4            106
  CLUS_3            6            157
  CLUS_4            5             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH9 MUTATED       10      3      6      2
  MYH9 WILD-TYPE    166     94    162     60
D57V6, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1           10            166
  CLUS_2            3             94
  CLUS_3            6            162
  CLUS_4            2             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH9 MUTATED        2      7      4      5      3
  MYH9 WILD-TYPE     75    128    124     84     74
D57V7, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            7            128
  CLUS_3            4            124
  CLUS_4            5             84
  CLUS_5            3             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED       11      4      6
  MYH9 WILD-TYPE    179    136    170
D57V8, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1           11            179
  CLUS_2            4            136
  CLUS_3            6            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        5     10      4
  MYH9 WILD-TYPE    135    175    133
D57V9, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            5            135
  CLUS_2           10            175
  CLUS_3            4            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH9 MUTATED        6      5      8
  MYH9 WILD-TYPE    165     94    184
D57V10, multiclass
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  CLUS_1            6            165
  CLUS_2            5             94
  CLUS_3            8            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = NOTCH2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2 MUTATED        9      4      6      1
  NOTCH2 WILD-TYPE    190    117    133     45
D58V1, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              9              190
  CLUS_2              4              117
  CLUS_3              6              133
  CLUS_4              1               45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH2 MUTATED        4      3      4      4      2      4      0
  NOTCH2 WILD-TYPE     82     79     98     84     71     71      5
D58V2, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              4               82
  CLUS_2              3               79
  CLUS_3              4               98
  CLUS_4              4               84
  CLUS_5              2               71
  CLUS_6              4               71
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH2 MUTATED        3      3      0      4      1
  NOTCH2 WILD-TYPE     48     27     33     23     68
D58V3, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               27
  CLUS_3              0               33
  CLUS_4              4               23
  CLUS_5              1               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        6      3      2
  NOTCH2 WILD-TYPE     72     82     45
D58V4, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              6               72
  CLUS_2              3               82
  CLUS_3              2               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2 MUTATED        8      6      3      4
  NOTCH2 WILD-TYPE    125    104    160     93
D58V5, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              8              125
  CLUS_2              6              104
  CLUS_3              3              160
  CLUS_4              4               93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2 MUTATED       11      3      6      1
  NOTCH2 WILD-TYPE    165     94    162     61
D58V6, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1             11              165
  CLUS_2              3               94
  CLUS_3              6              162
  CLUS_4              1               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH2 MUTATED        2      9      4      4      2
  NOTCH2 WILD-TYPE     75    126    124     85     75
D58V7, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              9              126
  CLUS_3              4              124
  CLUS_4              4               85
  CLUS_5              2               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED       10      5      6
  NOTCH2 WILD-TYPE    180    135    170
D58V8, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1             10              180
  CLUS_2              5              135
  CLUS_3              6              170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        7      6      5
  NOTCH2 WILD-TYPE    133    179    132
D58V9, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              7              133
  CLUS_2              6              179
  CLUS_3              5              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        9      4      5
  NOTCH2 WILD-TYPE    162     95    187
D58V10, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              9              162
  CLUS_2              4               95
  CLUS_3              5              187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = NCOR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOR1 MUTATED        6      3      6      1
  NCOR1 WILD-TYPE    193    118    133     45
D59V1, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             6             193
  CLUS_2             3             118
  CLUS_3             6             133
  CLUS_4             1              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOR1 MUTATED        2      3      6      4      2      0      0
  NCOR1 WILD-TYPE     84     79     96     84     71     75      5
D59V2, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             3              79
  CLUS_3             6              96
  CLUS_4             4              84
  CLUS_5             2              71
  CLUS_6             0              75
  CLUS_7             0               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOR1 MUTATED        1      1      1      3      4
  NCOR1 WILD-TYPE     50     29     32     24     65
D59V3, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              29
  CLUS_3             1              32
  CLUS_4             3              24
  CLUS_5             4              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        3      6      1
  NCOR1 WILD-TYPE     75     79     46
D59V4, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             3              75
  CLUS_2             6              79
  CLUS_3             1              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOR1 MUTATED        6      4      5      2
  NCOR1 WILD-TYPE    127    106    158     95
D59V5, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             6             127
  CLUS_2             4             106
  CLUS_3             5             158
  CLUS_4             2              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOR1 MUTATED        3      5      8      1
  NCOR1 WILD-TYPE    173     92    160     61
D59V6, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             3             173
  CLUS_2             5              92
  CLUS_3             8             160
  CLUS_4             1              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOR1 MUTATED        4      4      3      3      3
  NCOR1 WILD-TYPE     73    131    125     86     74
D59V7, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             4             131
  CLUS_3             3             125
  CLUS_4             3              86
  CLUS_5             3              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        5      8      4
  NCOR1 WILD-TYPE    185    132    172
D59V8, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             8             132
  CLUS_3             4             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        6      7      4
  NCOR1 WILD-TYPE    134    178    133
D59V9, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             6             134
  CLUS_2             7             178
  CLUS_3             4             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOR1 MUTATED        5      4      8
  NCOR1 WILD-TYPE    166     95    184
D59V10, multiclass
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  CLUS_1             5             166
  CLUS_2             4              95
  CLUS_3             8             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = AK5 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK5 MUTATED        5      3      5      0
  AK5 WILD-TYPE    194    118    134     46
D60V1, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           5           194
  CLUS_2           3           118
  CLUS_3           5           134
  CLUS_4           0            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AK5 MUTATED        1      3      5      0      1      3      0
  AK5 WILD-TYPE     85     79     97     88     72     72      5
D60V2, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           1            85
  CLUS_2           3            79
  CLUS_3           5            97
  CLUS_4           0            88
  CLUS_5           1            72
  CLUS_6           3            72
  CLUS_7           0             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AK5 MUTATED        0      1      0      0      3
  AK5 WILD-TYPE     51     29     33     27     66
D60V3, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           0            51
  CLUS_2           1            29
  CLUS_3           0            33
  CLUS_4           0            27
  CLUS_5           3            66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AK5 MUTATED        1      3      0
  AK5 WILD-TYPE     77     82     47
D60V4, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           1            77
  CLUS_2           3            82
  CLUS_3           0            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK5 MUTATED        4      2      3      3
  AK5 WILD-TYPE    129    108    160     94
D60V5, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           4           129
  CLUS_2           2           108
  CLUS_3           3           160
  CLUS_4           3            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK5 MUTATED        4      2      6      0
  AK5 WILD-TYPE    172     95    162     62
D60V6, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           4           172
  CLUS_2           2            95
  CLUS_3           6           162
  CLUS_4           0            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AK5 MUTATED        3      5      0      1      4
  AK5 WILD-TYPE     74    130    128     88     73
D60V7, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           3            74
  CLUS_2           5           130
  CLUS_3           0           128
  CLUS_4           1            88
  CLUS_5           4            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AK5 MUTATED        7      5      1
  AK5 WILD-TYPE    183    135    175
D60V8, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           7           183
  CLUS_2           5           135
  CLUS_3           1           175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AK5 MUTATED        6      6      1
  AK5 WILD-TYPE    134    179    136
D60V9, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           6           134
  CLUS_2           6           179
  CLUS_3           1           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AK5 MUTATED        6      5      2
  AK5 WILD-TYPE    165     94    190
D60V10, multiclass
        clus
vv       AK5 MUTATED AK5 WILD-TYPE
  CLUS_1           6           165
  CLUS_2           5            94
  CLUS_3           2           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = SPTY2D1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        3      3      1      3
  SPTY2D1 WILD-TYPE    196    118    138     43
D61V1, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3               196
  CLUS_2               3               118
  CLUS_3               1               138
  CLUS_4               3                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPTY2D1 MUTATED        0      1      2      3      2      1      1
  SPTY2D1 WILD-TYPE     86     81    100     85     71     74      4
D61V2, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               0                86
  CLUS_2               1                81
  CLUS_3               2               100
  CLUS_4               3                85
  CLUS_5               2                71
  CLUS_6               1                74
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        0      3      0      0      2
  SPTY2D1 WILD-TYPE     51     27     33     27     67
D61V3, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               3                27
  CLUS_3               0                33
  CLUS_4               0                27
  CLUS_5               2                67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED        1      4      0
  SPTY2D1 WILD-TYPE     77     81     47
D61V4, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               1                77
  CLUS_2               4                81
  CLUS_3               0                47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        4      0      4      2
  SPTY2D1 WILD-TYPE    129    110    159     95
D61V5, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               4               129
  CLUS_2               0               110
  CLUS_3               4               159
  CLUS_4               2                95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        3      2      3      2
  SPTY2D1 WILD-TYPE    173     95    165     60
D61V6, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3               173
  CLUS_2               2                95
  CLUS_3               3               165
  CLUS_4               2                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        1      2      5      0      2
  SPTY2D1 WILD-TYPE     76    133    123     89     75
D61V7, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               1                76
  CLUS_2               2               133
  CLUS_3               5               123
  CLUS_4               0                89
  CLUS_5               2                75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED        3      5      2
  SPTY2D1 WILD-TYPE    187    135    174
D61V8, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3               187
  CLUS_2               5               135
  CLUS_3               2               174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED        1      3      3
  SPTY2D1 WILD-TYPE    139    182    134
D61V9, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               1               139
  CLUS_2               3               182
  CLUS_3               3               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED        1      2      4
  SPTY2D1 WILD-TYPE    170     97    188
D61V10, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               1               170
  CLUS_2               2                97
  CLUS_3               4               188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = PIWIL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        2      2      3      0
  PIWIL2 WILD-TYPE    197    119    136     46
D62V1, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              2              197
  CLUS_2              2              119
  CLUS_3              3              136
  CLUS_4              0               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIWIL2 MUTATED        4      0      3      1      0      0      0
  PIWIL2 WILD-TYPE     82     82     99     87     73     75      5
D62V2, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              4               82
  CLUS_2              0               82
  CLUS_3              3               99
  CLUS_4              1               87
  CLUS_5              0               73
  CLUS_6              0               75
  CLUS_7              0                5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        1      0      1      1      1
  PIWIL2 WILD-TYPE     50     30     32     26     68
D62V3, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               30
  CLUS_3              1               32
  CLUS_4              1               26
  CLUS_5              1               68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        2      2      0
  PIWIL2 WILD-TYPE     76     83     47
D62V4, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              2               76
  CLUS_2              2               83
  CLUS_3              0               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        2      1      1      4
  PIWIL2 WILD-TYPE    131    109    162     93
D62V5, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              2              131
  CLUS_2              1              109
  CLUS_3              1              162
  CLUS_4              4               93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        5      1      2      0
  PIWIL2 WILD-TYPE    171     96    166     62
D62V6, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              5              171
  CLUS_2              1               96
  CLUS_3              2              166
  CLUS_4              0               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        0      2      1      1      4
  PIWIL2 WILD-TYPE     77    133    127     88     73
D62V7, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              0               77
  CLUS_2              2              133
  CLUS_3              1              127
  CLUS_4              1               88
  CLUS_5              4               73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        5      3      0
  PIWIL2 WILD-TYPE    185    137    176
D62V8, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              5              185
  CLUS_2              3              137
  CLUS_3              0              176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        4      2      1
  PIWIL2 WILD-TYPE    136    183    136
D62V9, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              4              136
  CLUS_2              2              183
  CLUS_3              1              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        5      1      1
  PIWIL2 WILD-TYPE    166     98    191
D62V10, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              5              166
  CLUS_2              1               98
  CLUS_3              1              191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
