name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-4P-AA8J-01A-11D-A391-08	158	158	0	114	0	coding only	1	28836904	...	44	104	158	1.525823e-06	3.606490e-06	5.479090e-06	-5.261292e+00	...	10	28780708	...	3.474550e-07
TCGA-BA-4074-01A-01D-1434-08	171	168	3	130	1.754386e-02	coding only	1	28836904	...	38	118	171	1.317756e-06	4.091979e-06	5.929901e-06	-5.226953e+00	...	12	28780708	...	4.169460e-07
TCGA-BA-4075-01A-01D-1434-08	236	231	5	174	2.118644e-02	coding only	1	28836904	...	57	156	236	1.976634e-06	5.409735e-06	8.183958e-06	-5.087037e+00	...	18	28780708	...	6.254189e-07
TCGA-BA-4076-01A-01D-1434-08	392	382	10	295	2.551020e-02	coding only	1	28836904	...	87	283	391	3.016967e-06	9.813814e-06	1.355901e-05	-4.867772e+00	...	11	28780708	...	3.822005e-07
TCGA-BA-4077-01B-01D-1434-08	376	368	8	274	2.127660e-02	coding only	1	28836904	...	94	263	376	3.259712e-06	9.120258e-06	1.303885e-05	-4.884761e+00	...	11	28780708	...	3.822005e-07
TCGA-BA-4078-01A-01D-1434-08	515	504	11	379	2.135922e-02	coding only	1	28836904	...	125	362	515	4.334723e-06	1.255336e-05	1.785906e-05	-4.748141e+00	...	17	28780708	...	5.906734e-07
TCGA-BA-5149-01A-01D-1512-08	145	144	1	119	6.896552e-03	coding only	1	28836904	...	25	110	145	8.669447e-07	3.814557e-06	5.028279e-06	-5.298581e+00	...	9	28780708	...	3.127095e-07
TCGA-BA-5151-01A-01D-1434-08	114	110	4	82	3.508772e-02	coding only	1	28836904	...	27	76	113	9.363002e-07	2.635512e-06	3.918590e-06	-5.406870e+00	...	6	28780708	...	2.084730e-07
TCGA-BA-5152-01A-02D-1870-08	603	593	10	435	1.658375e-02	coding only	1	28836904	...	158	431	603	5.479090e-06	1.494613e-05	2.091071e-05	-4.679631e+00	...	3	28780708	...	1.042365e-07
TCGA-BA-5153-01A-01D-1434-08	58	56	2	46	3.448276e-02	coding only	1	28836904	...	10	42	58	3.467779e-07	1.456467e-06	2.011312e-06	-5.696521e+00	...	4	28780708	...	1.389820e-07
TCGA-BA-5555-01A-01D-1512-08	168	166	2	136	1.190476e-02	coding only	1	28836904	...	30	127	167	1.040334e-06	4.404079e-06	5.791190e-06	-5.237232e+00	...	8	28780708	...	2.779640e-07
TCGA-BA-5556-01A-01D-1512-08	168	166	2	129	1.190476e-02	coding only	1	28836904	...	37	123	168	1.283078e-06	4.265368e-06	5.825868e-06	-5.234639e+00	...	6	28780708	...	2.084730e-07
TCGA-BA-5557-01A-01D-1512-08	62	62	0	44	0	coding only	1	28836904	...	18	41	62	6.242002e-07	1.421789e-06	2.150023e-06	-5.667557e+00	...	3	28780708	...	1.042365e-07
TCGA-BA-5558-01A-01D-1512-08	194	194	0	130	0	coding only	1	28836904	...	64	126	194	2.219378e-06	4.369401e-06	6.727491e-06	-5.172147e+00	...	4	28780708	...	1.389820e-07
TCGA-BA-5559-01A-01D-1512-08	114	114	0	89	0	coding only	1	28836904	...	25	81	114	8.669447e-07	2.808901e-06	3.953268e-06	-5.403044e+00	...	8	28780708	...	2.779640e-07
TCGA-BA-6868-01B-12D-1912-08	185	180	5	135	2.702703e-02	coding only	1	28836904	...	45	126	184	1.560500e-06	4.369401e-06	6.380713e-06	-5.195131e+00	...	8	28780708	...	2.779640e-07
TCGA-BA-6869-01A-11D-1870-08	538	528	10	399	1.858736e-02	coding only	1	28836904	...	129	381	537	4.473434e-06	1.321224e-05	1.862197e-05	-4.729974e+00	...	16	28780708	...	5.559280e-07
TCGA-BA-6870-01A-11D-1870-08	120	120	0	86	0	coding only	1	28836904	...	34	76	120	1.179045e-06	2.635512e-06	4.161334e-06	-5.380767e+00	...	10	28780708	...	3.474550e-07
TCGA-BA-6871-01A-11D-1870-08	165	161	4	127	2.424242e-02	coding only	1	28836904	...	34	123	165	1.179045e-06	4.265368e-06	5.721835e-06	-5.242465e+00	...	4	28780708	...	1.389820e-07
TCGA-BA-6872-01A-11D-1870-08	196	193	3	157	1.530612e-02	coding only	1	28836904	...	36	146	196	1.248400e-06	5.062957e-06	6.796846e-06	-5.167693e+00	...	11	28780708	...	3.822005e-07
TCGA-BA-6873-01A-11D-1870-08	82	82	0	62	0	coding only	1	28836904	...	20	55	82	6.935557e-07	1.907278e-06	2.843578e-06	-5.546135e+00	...	7	28780708	...	2.432185e-07
TCGA-BA-7269-01A-11D-2012-08	114	112	2	84	1.754386e-02	coding only	1	28836904	...	28	79	114	9.709780e-07	2.739545e-06	3.953268e-06	-5.403044e+00	...	5	28780708	...	1.737275e-07
TCGA-BA-A4IF-01A-11D-A25Y-08	118	117	1	96	8.474576e-03	coding only	1	28836904	...	21	87	117	7.282335e-07	3.016967e-06	4.057301e-06	-5.391763e+00	...	8	28780708	...	2.779640e-07
TCGA-BA-A4IG-01A-11D-A25Y-08	150	143	7	106	4.666667e-02	exome+100bp flanks	2	35887302	...	37	99	149	1.031005e-06	2.758636e-06	4.151886e-06	-5.381755e+00	...	7	32163822	...	2.176358e-07
TCGA-BA-A4IH-01A-11D-A25Y-08	56	56	0	47	0	coding only	1	28836904	...	9	45	56	3.121001e-07	1.560500e-06	1.941956e-06	-5.711761e+00	...	2	28780708	...	6.949099e-08
TCGA-BA-A4II-01A-11D-A25Y-08	122	122	0	91	0	coding only	1	28836904	...	31	87	122	1.075011e-06	3.016967e-06	4.230690e-06	-5.373589e+00	...	4	28780708	...	1.389820e-07
TCGA-BA-A6D8-01A-31D-A31L-08	133	127	6	109	4.511278e-02	exome+100bp flanks	2	35887302	...	18	102	133	5.015702e-07	2.842231e-06	3.706046e-06	-5.431089e+00	...	7	32163822	...	2.176358e-07
TCGA-BA-A6DA-01A-31D-A31L-08	795	782	13	593	1.635220e-02	coding only	1	28836904	...	189	565	795	6.554102e-06	1.959295e-05	2.756884e-05	-4.559582e+00	...	28	28780708	...	9.728739e-07
TCGA-BA-A6DB-01A-11D-A30E-08	44	44	0	32	0	coding only	1	28836904	...	12	32	44	4.161334e-07	1.109689e-06	1.525823e-06	-5.816496e+00	...	0	28780708	...	0
TCGA-BA-A6DD-01A-12D-A31L-08	75	75	0	58	0	coding only	1	28836904	...	17	57	75	5.895224e-07	1.976634e-06	2.600834e-06	-5.584887e+00	...	1	28780708	...	3.474550e-08
TCGA-BA-A6DE-01A-22D-A31L-08	147	144	3	106	2.040816e-02	coding only	1	28836904	...	38	98	147	1.317756e-06	3.398423e-06	5.097635e-06	-5.292631e+00	...	8	28780708	...	2.779640e-07
TCGA-BA-A6DF-01A-11D-A30E-08	209	206	3	163	1.435407e-02	coding only	1	28836904	...	43	153	209	1.491145e-06	5.305701e-06	7.247657e-06	-5.139802e+00	...	10	28780708	...	3.474550e-07
TCGA-BA-A6DG-01A-21D-A30E-08	45	43	2	25	4.444444e-02	coding only	1	28836904	...	18	23	45	6.242002e-07	7.975891e-07	1.560500e-06	-5.806736e+00	...	2	28780708	...	6.949099e-08
TCGA-BA-A6DI-01A-11D-A30E-08	128	124	4	98	3.125000e-02	coding only	1	28836904	...	26	93	128	9.016224e-07	3.225034e-06	4.438757e-06	-5.352739e+00	...	5	28780708	...	1.737275e-07
TCGA-BA-A6DJ-01A-11D-A30E-08	354	348	6	246	1.694915e-02	coding only	1	28836904	...	102	234	354	3.537134e-06	8.114602e-06	1.227594e-05	-4.910945e+00	...	11	28780708	...	3.822005e-07
TCGA-BA-A6DL-01A-21D-A30E-08	128	125	3	99	2.343750e-02	coding only	1	28836904	...	26	95	128	9.016224e-07	3.294390e-06	4.438757e-06	-5.352739e+00	...	4	28780708	...	1.389820e-07
TCGA-BA-A8YP-01A-11D-A391-08	183	177	6	133	3.278689e-02	exome+100bp flanks	2	35887302	...	44	126	183	1.226060e-06	3.510991e-06	5.099297e-06	-5.292490e+00	...	7	32163822	...	2.176358e-07
TCGA-BB-4217-01A-11D-2078-08	44	44	0	34	0	coding only	1	28836904	...	10	30	44	3.467779e-07	1.040334e-06	1.525823e-06	-5.816496e+00	...	4	28780708	...	1.389820e-07
TCGA-BB-4223-01A-01D-1434-08	387	379	8	286	2.067183e-02	coding only	1	28836904	...	93	278	387	3.225034e-06	9.640425e-06	1.342030e-05	-4.872238e+00	...	8	28780708	...	2.779640e-07
TCGA-BB-4224-01A-01D-1434-08	97	95	2	76	2.061856e-02	coding only	1	28836904	...	19	69	97	6.588779e-07	2.392767e-06	3.363745e-06	-5.473177e+00	...	7	28780708	...	2.432185e-07
TCGA-BB-4225-01A-01D-1434-08	97	96	1	64	1.030928e-02	coding only	1	28836904	...	32	60	97	1.109689e-06	2.080667e-06	3.363745e-06	-5.473177e+00	...	4	28780708	...	1.389820e-07
TCGA-BB-4227-01A-01D-1870-08	314	311	3	212	9.554140e-03	coding only	1	28836904	...	99	200	314	3.433101e-06	6.935557e-06	1.088882e-05	-4.963019e+00	...	12	28780708	...	4.169460e-07
TCGA-BB-4228-01A-01D-1434-08	72	72	0	56	0	coding only	1	28836904	...	16	51	72	5.548446e-07	1.768567e-06	2.496801e-06	-5.602616e+00	...	5	28780708	...	1.737275e-07
TCGA-BB-7870-01A-11D-2229-08	332	328	4	249	1.204819e-02	coding only	1	28836904	...	79	232	332	2.739545e-06	8.045246e-06	1.151303e-05	-4.938811e+00	...	17	28780708	...	5.906734e-07
TCGA-BB-8596-01A-11D-2394-08	109	108	1	73	9.174312e-03	coding only	1	28836904	...	35	71	109	1.213723e-06	2.462123e-06	3.779879e-06	-5.422522e+00	...	2	28780708	...	6.949099e-08
TCGA-BB-8601-01A-11D-2394-08	80	79	1	59	1.250000e-02	coding only	1	28836904	...	20	51	80	6.935557e-07	1.768567e-06	2.774223e-06	-5.556859e+00	...	8	28780708	...	2.779640e-07
TCGA-BB-A5HU-01A-11D-A28R-08	214	212	2	156	9.345794e-03	coding only	1	28836904	...	56	154	214	1.941956e-06	5.340379e-06	7.421046e-06	-5.129535e+00	...	2	28780708	...	6.949099e-08
TCGA-BB-A5HY-01A-11D-A28R-08	252	246	6	193	2.380952e-02	coding only	1	28836904	...	53	181	252	1.837923e-06	6.276679e-06	8.738802e-06	-5.058548e+00	...	12	28780708	...	4.169460e-07
TCGA-BB-A5HZ-01A-21D-A28R-08	94	91	3	62	3.191489e-02	coding only	1	28836904	...	29	49	94	1.005656e-06	1.699212e-06	3.259712e-06	-5.486821e+00	...	13	28780708	...	4.516915e-07
TCGA-BB-A6UM-01A-12D-A34J-08	80	79	1	56	1.250000e-02	coding only	1	28836904	...	23	56	80	7.975891e-07	1.941956e-06	2.774223e-06	-5.556859e+00	...	0	28780708	...	0
TCGA-BB-A6UO-01A-12D-A34J-08	130	129	1	96	7.692308e-03	coding only	1	28836904	...	33	84	130	1.144367e-06	2.912934e-06	4.508112e-06	-5.346005e+00	...	12	28780708	...	4.169460e-07
TCGA-C9-A47Z-01A-11D-A24D-08	119	116	3	87	2.521008e-02	coding only	1	28836904	...	29	81	119	1.005656e-06	2.808901e-06	4.126657e-06	-5.384402e+00	...	6	28780708	...	2.084730e-07
TCGA-C9-A480-01A-12D-A24D-08	61	60	1	40	1.639344e-02	coding only	1	28836904	...	20	38	61	6.935557e-07	1.317756e-06	2.115345e-06	-5.674619e+00	...	2	28780708	...	6.949099e-08
TCGA-CN-4723-01A-01D-1434-08	1064	1046	18	776	1.691729e-02	coding only	1	28836904	...	270	760	1064	9.363002e-06	2.635512e-05	3.689716e-05	-4.433007e+00	...	15	28780708	...	5.211825e-07
TCGA-CN-4725-01A-01D-1434-08	76	74	2	53	2.631579e-02	coding only	1	28836904	...	21	47	76	7.282335e-07	1.629856e-06	2.635512e-06	-5.579135e+00	...	6	28780708	...	2.084730e-07
TCGA-CN-4726-01A-01D-1434-08	103	101	2	73	1.941748e-02	coding only	1	28836904	...	28	67	103	9.709780e-07	2.323412e-06	3.571812e-06	-5.447111e+00	...	6	28780708	...	2.084730e-07
TCGA-CN-4727-01A-01D-1434-08	512	506	6	392	1.171875e-02	coding only	1	28836904	...	114	372	512	3.953268e-06	1.290014e-05	1.775503e-05	-4.750679e+00	...	20	28780708	...	6.949099e-07
TCGA-CN-4728-01A-01D-1434-08	177	172	5	130	2.824859e-02	coding only	1	28836904	...	42	118	177	1.456467e-06	4.091979e-06	6.137968e-06	-5.211975e+00	...	12	28780708	...	4.169460e-07
TCGA-CN-4729-01A-01D-1434-08	181	176	5	125	2.762431e-02	coding only	1	28836904	...	51	112	181	1.768567e-06	3.883912e-06	6.276679e-06	-5.202270e+00	...	13	28780708	...	4.516915e-07
TCGA-CN-4730-01A-01D-1434-08	201	194	7	151	3.482587e-02	exome+100bp flanks	2	35887302	...	43	146	201	1.198195e-06	4.068291e-06	5.600867e-06	-5.251745e+00	...	5	32163822	...	1.554542e-07
TCGA-CN-4731-01A-01D-1434-08	156	152	4	108	2.564103e-02	coding only	1	28836904	...	44	94	156	1.525823e-06	3.259712e-06	5.409735e-06	-5.266824e+00	...	14	28780708	...	4.864370e-07
TCGA-CN-4733-01A-02D-1870-08	48	47	1	34	2.083333e-02	coding only	1	28836904	...	13	33	48	4.508112e-07	1.144367e-06	1.664534e-06	-5.778707e+00	...	1	28780708	...	3.474550e-08
TCGA-CN-4734-01A-01D-1434-08	190	190	0	135	0	coding only	1	28836904	...	55	127	190	1.907278e-06	4.404079e-06	6.588779e-06	-5.181195e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-4735-01A-01D-1434-08	179	177	2	132	1.117318e-02	coding only	1	28836904	...	45	128	179	1.560500e-06	4.438757e-06	6.207324e-06	-5.207096e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-4736-01A-01D-1434-08	115	114	1	94	8.695652e-03	coding only	1	28836904	...	20	90	115	6.935557e-07	3.121001e-06	3.987945e-06	-5.399251e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-4737-01A-01D-1434-08	61	59	2	41	3.278689e-02	coding only	1	28836904	...	18	37	61	6.242002e-07	1.283078e-06	2.115345e-06	-5.674619e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-4738-01A-02D-1512-08	136	134	2	99	1.470588e-02	coding only	1	28836904	...	35	92	136	1.213723e-06	3.190356e-06	4.716179e-06	-5.326410e+00	...	7	28780708	...	2.432185e-07
TCGA-CN-4739-01A-02D-1512-08	255	252	3	190	1.176471e-02	coding only	1	28836904	...	62	181	255	2.150023e-06	6.276679e-06	8.842836e-06	-5.053408e+00	...	9	28780708	...	3.127095e-07
TCGA-CN-4740-01A-01D-1434-08	188	183	5	140	2.659574e-02	coding only	1	28836904	...	43	133	188	1.491145e-06	4.612146e-06	6.519424e-06	-5.185791e+00	...	7	28780708	...	2.432185e-07
TCGA-CN-4741-01A-01D-1434-08	203	199	4	147	1.970443e-02	coding only	1	28836904	...	52	146	203	1.803245e-06	5.062957e-06	7.039591e-06	-5.152453e+00	...	1	28780708	...	3.474550e-08
TCGA-CN-4742-01A-02D-1512-08	103	102	1	80	9.708738e-03	coding only	1	28836904	...	22	72	103	7.629113e-07	2.496801e-06	3.571812e-06	-5.447111e+00	...	7	28780708	...	2.432185e-07
TCGA-CN-5355-01A-01D-1434-08	142	141	1	114	7.042254e-03	coding only	1	28836904	...	27	106	142	9.363002e-07	3.675845e-06	4.924246e-06	-5.307660e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-5356-01A-01D-1434-08	427	421	6	325	1.405152e-02	coding only	1	28836904	...	95	302	426	3.294390e-06	1.047269e-05	1.477274e-05	-4.830539e+00	...	23	28780708	...	7.991464e-07
TCGA-CN-5358-01A-01D-1512-08	68	67	1	54	1.470588e-02	coding only	1	28836904	...	13	50	68	4.508112e-07	1.733889e-06	2.358089e-06	-5.627440e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-5359-01A-01D-1434-08	188	185	3	138	1.595745e-02	coding only	1	28836904	...	47	130	188	1.629856e-06	4.508112e-06	6.519424e-06	-5.185791e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-5360-01A-01D-1434-08	584	572	12	442	2.054795e-02	coding only	1	28836904	...	130	421	582	4.508112e-06	1.459935e-05	2.018247e-05	-4.695026e+00	...	19	28780708	...	6.601644e-07
TCGA-CN-5361-01A-01D-1434-08	144	143	1	96	6.944444e-03	coding only	1	28836904	...	47	84	144	1.629856e-06	2.912934e-06	4.993601e-06	-5.301586e+00	...	12	28780708	...	4.169460e-07
TCGA-CN-5363-01A-01D-1434-08	224	224	0	165	0	coding only	1	28836904	...	59	149	224	2.045989e-06	5.166990e-06	7.767824e-06	-5.109701e+00	...	16	28780708	...	5.559280e-07
TCGA-CN-5364-01A-01D-1434-08	155	154	1	131	6.451613e-03	coding only	1	28836904	...	23	124	155	7.975891e-07	4.300046e-06	5.375057e-06	-5.269617e+00	...	7	28780708	...	2.432185e-07
TCGA-CN-5365-01A-01D-1434-08	105	103	2	80	1.904762e-02	coding only	1	28836904	...	23	72	105	7.975891e-07	2.496801e-06	3.641168e-06	-5.438759e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-5366-01A-01D-1434-08	125	121	4	97	3.200000e-02	coding only	1	28836904	...	24	88	125	8.322669e-07	3.051645e-06	4.334723e-06	-5.363039e+00	...	9	28780708	...	3.127095e-07
TCGA-CN-5367-01A-01D-1434-08	124	120	4	96	3.225806e-02	coding only	1	28836904	...	24	89	124	8.322669e-07	3.086323e-06	4.300046e-06	-5.366527e+00	...	7	28780708	...	2.432185e-07
TCGA-CN-5369-01A-01D-1434-08	575	565	10	431	1.739130e-02	coding only	1	28836904	...	134	373	575	4.646823e-06	1.293481e-05	1.993973e-05	-4.700281e+00	...	57	28780708	...	1.980493e-06
TCGA-CN-5370-01A-01D-2012-08	125	124	1	98	8.000000e-03	coding only	1	28836904	...	26	91	125	9.016224e-07	3.155679e-06	4.334723e-06	-5.363039e+00	...	7	28780708	...	2.432185e-07
TCGA-CN-5373-01A-01D-1434-08	194	189	5	137	2.577320e-02	coding only	1	28836904	...	52	127	194	1.803245e-06	4.404079e-06	6.727491e-06	-5.172147e+00	...	10	28780708	...	3.474550e-07
TCGA-CN-5374-01A-01D-1434-08	212	206	6	148	2.830189e-02	coding only	1	28836904	...	58	147	212	2.011312e-06	5.097635e-06	7.351691e-06	-5.133613e+00	...	1	28780708	...	3.474550e-08
TCGA-CN-6010-01A-11D-1683-08	203	201	2	151	9.852217e-03	coding only	1	28836904	...	50	146	203	1.733889e-06	5.062957e-06	7.039591e-06	-5.152453e+00	...	5	28780708	...	1.737275e-07
TCGA-CN-6011-01A-11D-1683-08	419	412	7	310	1.670644e-02	coding only	1	28836904	...	102	301	419	3.537134e-06	1.043801e-05	1.452999e-05	-4.837735e+00	...	9	28780708	...	3.127095e-07
TCGA-CN-6012-01A-11D-1683-08	138	135	3	109	2.173913e-02	coding only	1	28836904	...	26	103	138	9.016224e-07	3.571812e-06	4.785535e-06	-5.320070e+00	...	6	28780708	...	2.084730e-07
TCGA-CN-6013-01A-11D-1683-08	225	224	1	174	4.444444e-03	coding only	1	28836904	...	50	171	225	1.733889e-06	5.929901e-06	7.802502e-06	-5.107766e+00	...	3	28780708	...	1.042365e-07
TCGA-CN-6016-01A-11D-1683-08	143	143	0	105	0	coding only	1	28836904	...	38	102	143	1.317756e-06	3.537134e-06	4.958923e-06	-5.304613e+00	...	3	28780708	...	1.042365e-07
TCGA-CN-6017-01A-11D-1683-08	9	9	0	7	0	coding only	1	28836904	...	2	6	9	6.935557e-08	2.080667e-07	3.121001e-07	-6.505706e+00	...	1	28780708	...	3.474550e-08
TCGA-CN-6018-01A-11D-1683-08	138	136	2	97	1.449275e-02	coding only	1	28836904	...	39	89	138	1.352434e-06	3.086323e-06	4.785535e-06	-5.320070e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-6019-01A-11D-1683-08	160	158	2	129	1.250000e-02	coding only	1	28836904	...	29	119	160	1.005656e-06	4.126657e-06	5.548446e-06	-5.255829e+00	...	10	28780708	...	3.474550e-07
TCGA-CN-6020-01A-11D-1683-08	186	183	3	130	1.612903e-02	coding only	1	28836904	...	53	125	186	1.837923e-06	4.334723e-06	6.450068e-06	-5.190436e+00	...	5	28780708	...	1.737275e-07
TCGA-CN-6021-01A-11D-1683-08	322	318	4	251	1.242236e-02	coding only	1	28836904	...	67	233	321	2.323412e-06	8.079924e-06	1.113157e-05	-4.953444e+00	...	17	28780708	...	5.906734e-07
TCGA-CN-6022-01A-21D-1683-08	95	94	1	66	1.052632e-02	coding only	1	28836904	...	28	64	95	9.709780e-07	2.219378e-06	3.294390e-06	-5.482225e+00	...	2	28780708	...	6.949099e-08
TCGA-CN-6023-01A-11D-1683-08	126	126	0	106	0	coding only	1	28836904	...	20	98	126	6.935557e-07	3.398423e-06	4.369401e-06	-5.359578e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-6024-01A-11D-1683-08	208	206	2	134	9.615385e-03	coding only	1	28836904	...	72	124	208	2.496801e-06	4.300046e-06	7.212980e-06	-5.141885e+00	...	10	28780708	...	3.474550e-07
TCGA-CN-6988-01A-11D-1912-08	179	177	2	136	1.117318e-02	coding only	1	28836904	...	41	128	179	1.421789e-06	4.438757e-06	6.207324e-06	-5.207096e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-6989-01A-11D-1912-08	123	122	1	92	8.130081e-03	coding only	1	28836904	...	30	86	123	1.040334e-06	2.982290e-06	4.265368e-06	-5.370044e+00	...	6	28780708	...	2.084730e-07
TCGA-CN-6992-01A-11D-1912-08	387	381	6	292	1.550388e-02	coding only	1	28836904	...	89	279	387	3.086323e-06	9.675102e-06	1.342030e-05	-4.872238e+00	...	12	28780708	...	4.169460e-07
TCGA-CN-6994-01A-11D-1912-08	140	135	5	100	3.571429e-02	exome+100bp flanks	2	35887302	...	35	97	140	9.752753e-07	2.702906e-06	3.901101e-06	-5.408813e+00	...	3	32163822	...	9.327250e-08
TCGA-CN-6995-01A-31D-2012-08	255	253	2	203	7.843137e-03	coding only	1	28836904	...	50	195	255	1.733889e-06	6.762168e-06	8.842836e-06	-5.053408e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-6996-01A-11D-1912-08	65	63	2	48	3.076923e-02	coding only	1	28836904	...	15	47	65	5.201668e-07	1.629856e-06	2.254056e-06	-5.647035e+00	...	1	28780708	...	3.474550e-08
TCGA-CN-6997-01A-11D-2012-08	160	158	2	129	1.250000e-02	coding only	1	28836904	...	29	119	160	1.005656e-06	4.126657e-06	5.548446e-06	-5.255829e+00	...	10	28780708	...	3.474550e-07
TCGA-CN-6998-01A-23D-2012-08	99	97	2	66	2.020202e-02	coding only	1	28836904	...	31	62	99	1.075011e-06	2.150023e-06	3.433101e-06	-5.464313e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-A497-01A-11D-A24D-08	396	391	5	305	1.262626e-02	coding only	1	28836904	...	86	289	396	2.982290e-06	1.002188e-05	1.373240e-05	-4.862253e+00	...	16	28780708	...	5.559280e-07
TCGA-CN-A498-01A-11D-A24D-08	137	132	5	101	3.649635e-02	exome+100bp flanks	2	35887302	...	31	96	137	8.638153e-07	2.675041e-06	3.817506e-06	-5.418220e+00	...	5	32163822	...	1.554542e-07
TCGA-CN-A499-01A-11D-A24D-08	51	48	3	37	5.882353e-02	coding only	1	28836904	...	11	32	51	3.814557e-07	1.109689e-06	1.768567e-06	-5.752378e+00	...	5	28780708	...	1.737275e-07
TCGA-CN-A49A-01A-11D-A24D-08	139	137	2	103	1.438849e-02	coding only	1	28836904	...	34	100	139	1.179045e-06	3.467779e-06	4.820212e-06	-5.316934e+00	...	3	28780708	...	1.042365e-07
TCGA-CN-A49B-01A-31D-A24D-08	121	116	5	91	4.132231e-02	exome+100bp flanks	2	35887302	...	25	89	121	6.966252e-07	2.479986e-06	3.371666e-06	-5.472155e+00	...	2	32163822	...	6.218166e-08
TCGA-CN-A49C-01A-11D-A24D-08	73	70	3	44	4.109589e-02	coding only	1	28836904	...	26	40	73	9.016224e-07	1.387111e-06	2.531478e-06	-5.596626e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-A63T-01A-11D-A28R-08	299	296	3	224	1.003344e-02	coding only	1	28836904	...	72	213	299	2.496801e-06	7.386369e-06	1.036866e-05	-4.984277e+00	...	11	28780708	...	3.822005e-07
TCGA-CN-A63U-01A-11D-A30E-08	625	615	10	475	1.600000e-02	coding only	1	28836904	...	140	444	624	4.854890e-06	1.539694e-05	2.163894e-05	-4.664764e+00	...	30	28780708	...	1.042365e-06
TCGA-CN-A63V-01A-11D-A28R-08	91	91	0	74	0	coding only	1	28836904	...	17	71	91	5.895224e-07	2.462123e-06	3.155679e-06	-5.500907e+00	...	3	28780708	...	1.042365e-07
TCGA-CN-A63W-01A-11D-A30E-08	465	456	9	348	1.935484e-02	coding only	1	28836904	...	108	330	464	3.745201e-06	1.144367e-05	1.609049e-05	-4.793431e+00	...	17	28780708	...	5.906734e-07
TCGA-CN-A63Y-01A-11D-A30E-08	217	209	8	144	3.686636e-02	exome+100bp flanks	2	35887302	...	65	140	217	1.811226e-06	3.901101e-06	6.046707e-06	-5.218481e+00	...	3	32163822	...	9.327250e-08
TCGA-CN-A640-01A-21D-A30E-08	93	92	1	73	1.075269e-02	coding only	1	28836904	...	19	65	93	6.588779e-07	2.254056e-06	3.225034e-06	-5.491466e+00	...	8	28780708	...	2.779640e-07
TCGA-CN-A641-01A-11D-A30E-08	259	256	3	192	1.158301e-02	coding only	1	28836904	...	64	183	259	2.219378e-06	6.346035e-06	8.981547e-06	-5.046649e+00	...	9	28780708	...	3.127095e-07
TCGA-CN-A642-01A-12D-A30E-08	108	105	3	84	2.777778e-02	coding only	1	28836904	...	21	80	108	7.282335e-07	2.774223e-06	3.745201e-06	-5.426525e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-A6UY-01A-12D-A34J-08	50	50	0	33	0	coding only	1	28836904	...	17	32	50	5.895224e-07	1.109689e-06	1.733889e-06	-5.760979e+00	...	1	28780708	...	3.474550e-08
TCGA-CN-A6V1-01A-12D-A34J-08	486	481	5	330	1.028807e-02	coding only	1	28836904	...	151	327	486	5.236346e-06	1.133964e-05	1.685340e-05	-4.773312e+00	...	2	28780708	...	6.949099e-08
TCGA-CN-A6V3-01A-12D-A34J-08	283	282	1	208	3.533569e-03	coding only	1	28836904	...	74	198	283	2.566156e-06	6.866202e-06	9.813814e-06	-5.008162e+00	...	10	28780708	...	3.474550e-07
TCGA-CN-A6V6-01A-12D-A34J-08	98	98	0	71	0	coding only	1	28836904	...	27	66	98	9.363002e-07	2.288734e-06	3.398423e-06	-5.468723e+00	...	4	28780708	...	1.389820e-07
TCGA-CN-A6V7-01A-12D-A34J-08	64	63	1	43	1.562500e-02	coding only	1	28836904	...	20	42	64	6.935557e-07	1.456467e-06	2.219378e-06	-5.653769e+00	...	1	28780708	...	3.474550e-08
TCGA-CQ-5323-01A-01D-1683-08	89	88	1	68	1.123596e-02	coding only	1	28836904	...	20	59	89	6.935557e-07	2.045989e-06	3.086323e-06	-5.510559e+00	...	9	28780708	...	3.127095e-07
TCGA-CQ-5324-01A-01D-1683-08	84	83	1	68	1.190476e-02	coding only	1	28836904	...	15	62	84	5.201668e-07	2.150023e-06	2.912934e-06	-5.535669e+00	...	6	28780708	...	2.084730e-07
TCGA-CQ-5325-01A-01D-1683-08	68	68	0	55	0	coding only	1	28836904	...	13	52	68	4.508112e-07	1.803245e-06	2.358089e-06	-5.627440e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-5326-01A-01D-1870-08	262	260	2	181	7.633588e-03	coding only	1	28836904	...	79	178	262	2.739545e-06	6.172646e-06	9.085580e-06	-5.041647e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-5327-01A-01D-1683-08	280	274	6	208	2.142857e-02	coding only	1	28836904	...	66	191	280	2.288734e-06	6.623457e-06	9.709780e-06	-5.012791e+00	...	17	28780708	...	5.906734e-07
TCGA-CQ-5329-01A-01D-1683-08	42	42	0	32	0	coding only	1	28836904	...	10	30	42	3.467779e-07	1.040334e-06	1.456467e-06	-5.836699e+00	...	2	28780708	...	6.949099e-08
TCGA-CQ-5330-01A-01D-1683-08	84	83	1	64	1.190476e-02	coding only	1	28836904	...	19	60	84	6.588779e-07	2.080667e-06	2.912934e-06	-5.535669e+00	...	4	28780708	...	1.389820e-07
TCGA-CQ-5331-01A-02D-1870-08	174	165	9	129	5.172414e-02	exome+100bp flanks	2	35887302	...	36	127	174	1.003140e-06	3.538856e-06	4.848512e-06	-5.314392e+00	...	2	32163822	...	6.218166e-08
TCGA-CQ-5332-01A-01D-1683-08	168	162	6	123	3.571429e-02	exome+100bp flanks	2	35887302	...	39	117	168	1.086735e-06	3.260206e-06	4.681322e-06	-5.329632e+00	...	6	32163822	...	1.865450e-07
TCGA-CQ-5333-01A-01D-2394-08	245	243	2	180	8.163265e-03	coding only	1	28836904	...	63	174	245	2.184701e-06	6.033935e-06	8.496058e-06	-5.070783e+00	...	6	28780708	...	2.084730e-07
TCGA-CQ-5334-01A-01D-1683-08	226	224	2	173	8.849558e-03	coding only	1	28836904	...	51	156	226	1.768567e-06	5.409735e-06	7.837180e-06	-5.105840e+00	...	17	28780708	...	5.906734e-07
TCGA-CQ-6218-01A-11D-1912-08	160	158	2	107	1.250000e-02	coding only	1	28836904	...	51	102	160	1.768567e-06	3.537134e-06	5.548446e-06	-5.255829e+00	...	5	28780708	...	1.737275e-07
TCGA-CQ-6219-01A-11D-1912-08	88	88	0	64	0	coding only	1	28836904	...	24	61	88	8.322669e-07	2.115345e-06	3.051645e-06	-5.515466e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-6220-01A-11D-1912-08	135	134	1	101	7.407407e-03	coding only	1	28836904	...	33	99	135	1.144367e-06	3.433101e-06	4.681501e-06	-5.329615e+00	...	2	28780708	...	6.949099e-08
TCGA-CQ-6221-01A-11D-2078-08	132	129	3	104	2.272727e-02	coding only	1	28836904	...	25	93	132	8.669447e-07	3.225034e-06	4.577468e-06	-5.339375e+00	...	11	28780708	...	3.822005e-07
TCGA-CQ-6222-01A-11D-1912-08	77	76	1	59	1.298701e-02	coding only	1	28836904	...	17	56	77	5.895224e-07	1.941956e-06	2.670190e-06	-5.573458e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-6223-01A-11D-1912-08	105	104	1	78	9.523810e-03	coding only	1	28836904	...	26	77	105	9.016224e-07	2.670190e-06	3.641168e-06	-5.438759e+00	...	1	28780708	...	3.474550e-08
TCGA-CQ-6224-01A-11D-1912-08	88	87	1	58	1.136364e-02	coding only	1	28836904	...	29	57	88	1.005656e-06	1.976634e-06	3.051645e-06	-5.515466e+00	...	1	28780708	...	3.474550e-08
TCGA-CQ-6225-01A-11D-1912-08	185	183	2	142	1.081081e-02	coding only	1	28836904	...	41	124	185	1.421789e-06	4.300046e-06	6.415391e-06	-5.192777e+00	...	18	28780708	...	6.254189e-07
TCGA-CQ-6227-01A-11D-1912-08	54	51	3	38	5.555556e-02	coding only	1	28836904	...	13	36	53	4.508112e-07	1.248400e-06	1.837923e-06	-5.735673e+00	...	1	28780708	...	3.474550e-08
TCGA-CQ-6228-01A-11D-1912-08	121	120	1	100	8.264463e-03	coding only	1	28836904	...	20	98	121	6.935557e-07	3.398423e-06	4.196012e-06	-5.377163e+00	...	2	28780708	...	6.949099e-08
TCGA-CQ-6229-01A-11D-1912-08	36	35	1	25	2.777778e-02	coding only	1	28836904	...	10	21	36	3.467779e-07	7.282335e-07	1.248400e-06	-5.903646e+00	...	4	28780708	...	1.389820e-07
TCGA-CQ-7063-01A-11D-2394-08	158	156	2	118	1.265823e-02	coding only	1	28836904	...	38	115	158	1.317756e-06	3.987945e-06	5.479090e-06	-5.261292e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-7064-01A-11D-2394-08	125	124	1	93	8.000000e-03	coding only	1	28836904	...	31	90	125	1.075011e-06	3.121001e-06	4.334723e-06	-5.363039e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-7065-01A-11D-2078-08	40	40	0	28	0	coding only	1	28836904	...	12	26	40	4.161334e-07	9.016224e-07	1.387111e-06	-5.857889e+00	...	2	28780708	...	6.949099e-08
TCGA-CQ-7068-01A-11D-2078-08	127	125	2	88	1.574803e-02	coding only	1	28836904	...	37	82	126	1.283078e-06	2.843578e-06	4.369401e-06	-5.359578e+00	...	5	28780708	...	1.737275e-07
TCGA-CQ-7069-01A-11D-2394-08	107	107	0	85	0	coding only	1	28836904	...	22	82	107	7.629113e-07	2.843578e-06	3.710523e-06	-5.430565e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-7071-01A-12D-A30E-08	543	531	12	425	2.209945e-02	coding only	1	28836904	...	106	410	543	3.675845e-06	1.421789e-05	1.883004e-05	-4.725149e+00	...	15	28780708	...	5.211825e-07
TCGA-CQ-7072-01A-21D-A30E-08	145	142	3	120	2.068966e-02	coding only	1	28836904	...	22	116	145	7.629113e-07	4.022623e-06	5.028279e-06	-5.298581e+00	...	4	28780708	...	1.389820e-07
TCGA-CQ-A4C6-01A-11D-A25D-08	121	117	4	93	3.305785e-02	coding only	1	28836904	...	24	93	121	8.322669e-07	3.225034e-06	4.196012e-06	-5.377163e+00	...	0	28780708	...	0
TCGA-CQ-A4C7-01A-11D-A25D-08	73	71	2	54	2.739726e-02	coding only	1	28836904	...	17	49	73	5.895224e-07	1.699212e-06	2.531478e-06	-5.596626e+00	...	5	28780708	...	1.737275e-07
TCGA-CQ-A4C9-01A-11D-A25D-08	114	112	2	82	1.754386e-02	coding only	1	28836904	...	30	79	114	1.040334e-06	2.739545e-06	3.953268e-06	-5.403044e+00	...	3	28780708	...	1.042365e-07
TCGA-CQ-A4CA-01A-11D-A25D-08	76	74	2	53	2.631579e-02	coding only	1	28836904	...	21	49	76	7.282335e-07	1.699212e-06	2.635512e-06	-5.579135e+00	...	4	28780708	...	1.389820e-07
TCGA-CQ-A4CB-01A-11D-A25D-08	104	101	3	86	2.884615e-02	coding only	1	28836904	...	15	82	104	5.201668e-07	2.843578e-06	3.606490e-06	-5.442915e+00	...	4	28780708	...	1.389820e-07
TCGA-CQ-A4CD-01A-21D-A25D-08	169	167	2	139	1.183432e-02	coding only	1	28836904	...	28	133	169	9.709780e-07	4.612146e-06	5.860546e-06	-5.232062e+00	...	6	28780708	...	2.084730e-07
TCGA-CQ-A4CE-01A-11D-A25Y-08	87	85	2	61	2.298851e-02	coding only	1	28836904	...	24	56	87	8.322669e-07	1.941956e-06	3.016967e-06	-5.520429e+00	...	5	28780708	...	1.737275e-07
TCGA-CQ-A4CG-01A-11D-A25Y-08	90	87	3	68	3.333333e-02	coding only	1	28836904	...	19	64	90	6.588779e-07	2.219378e-06	3.121001e-06	-5.505706e+00	...	4	28780708	...	1.389820e-07
TCGA-CQ-A4CH-01A-11D-A25Y-08	33	30	3	21	9.090909e-02	coding only	1	28836904	...	9	20	33	3.121001e-07	6.935557e-07	1.144367e-06	-5.941435e+00	...	1	28780708	...	3.474550e-08
TCGA-CQ-A4CI-01A-11D-A25Y-08	116	115	1	88	8.620690e-03	coding only	1	28836904	...	27	82	116	9.363002e-07	2.843578e-06	4.022623e-06	-5.395491e+00	...	6	28780708	...	2.084730e-07
TCGA-CR-5243-01A-01D-1512-08	89	87	2	66	2.247191e-02	coding only	1	28836904	...	21	61	89	7.282335e-07	2.115345e-06	3.086323e-06	-5.510559e+00	...	5	28780708	...	1.737275e-07
TCGA-CR-5247-01A-01D-2012-08	90	89	1	69	1.111111e-02	coding only	1	28836904	...	20	60	90	6.935557e-07	2.080667e-06	3.121001e-06	-5.505706e+00	...	9	28780708	...	3.127095e-07
TCGA-CR-5248-01A-01D-2012-08	395	388	7	300	1.772152e-02	coding only	1	28836904	...	88	280	394	3.051645e-06	9.709780e-06	1.366305e-05	-4.864452e+00	...	19	28780708	...	6.601644e-07
TCGA-CR-5249-01A-01D-1512-08	64	63	1	39	1.562500e-02	coding only	1	28836904	...	24	35	64	8.322669e-07	1.213723e-06	2.219378e-06	-5.653769e+00	...	4	28780708	...	1.389820e-07
TCGA-CR-5250-01A-01D-1512-08	42	40	2	32	4.761905e-02	coding only	1	28836904	...	8	29	42	2.774223e-07	1.005656e-06	1.456467e-06	-5.836699e+00	...	3	28780708	...	1.042365e-07
TCGA-CR-6467-01A-11D-1870-08	61	61	0	42	0	coding only	1	28836904	...	19	39	61	6.588779e-07	1.352434e-06	2.115345e-06	-5.674619e+00	...	3	28780708	...	1.042365e-07
TCGA-CR-6470-01A-11D-1870-08	49	49	0	39	0	coding only	1	28836904	...	10	37	49	3.467779e-07	1.283078e-06	1.699212e-06	-5.769753e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-6471-01A-11D-1870-08	163	160	3	119	1.840491e-02	coding only	1	28836904	...	41	112	163	1.421789e-06	3.883912e-06	5.652479e-06	-5.247761e+00	...	7	28780708	...	2.432185e-07
TCGA-CR-6472-01A-11D-1870-08	540	530	10	400	1.851852e-02	coding only	1	28836904	...	130	389	539	4.508112e-06	1.348966e-05	1.869133e-05	-4.728360e+00	...	11	28780708	...	3.822005e-07
TCGA-CR-6473-01A-11D-1870-08	111	108	3	83	2.702703e-02	coding only	1	28836904	...	25	79	111	8.669447e-07	2.739545e-06	3.849234e-06	-5.414626e+00	...	4	28780708	...	1.389820e-07
TCGA-CR-6474-01A-11D-1870-08	136	132	4	103	2.941176e-02	coding only	1	28836904	...	29	99	136	1.005656e-06	3.433101e-06	4.716179e-06	-5.326410e+00	...	4	28780708	...	1.389820e-07
TCGA-CR-6477-01A-11D-1870-08	106	103	3	78	2.830189e-02	coding only	1	28836904	...	25	68	106	8.669447e-07	2.358089e-06	3.675845e-06	-5.434643e+00	...	10	28780708	...	3.474550e-07
TCGA-CR-6478-01A-11D-1870-08	152	149	3	96	1.973684e-02	coding only	1	28836904	...	53	94	152	1.837923e-06	3.259712e-06	5.271024e-06	-5.278105e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-6480-01A-11D-1870-08	134	132	2	93	1.492537e-02	coding only	1	28836904	...	39	90	134	1.352434e-06	3.121001e-06	4.646823e-06	-5.332844e+00	...	3	28780708	...	1.042365e-07
TCGA-CR-6481-01A-11D-1870-08	570	554	16	426	2.807018e-02	coding only	1	28836904	...	128	424	570	4.438757e-06	1.470338e-05	1.976634e-05	-4.704074e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-6482-01A-11D-1870-08	56	56	0	39	0	coding only	1	28836904	...	17	39	56	5.895224e-07	1.352434e-06	1.941956e-06	-5.711761e+00	...	0	28780708	...	0
TCGA-CR-6484-01A-11D-1870-08	329	326	3	243	9.118541e-03	coding only	1	28836904	...	83	241	329	2.878256e-06	8.357347e-06	1.140899e-05	-4.942753e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-6487-01A-11D-1870-08	153	149	4	119	2.614379e-02	coding only	1	28836904	...	30	115	153	1.040334e-06	3.987945e-06	5.305701e-06	-5.275257e+00	...	4	28780708	...	1.389820e-07
TCGA-CR-6488-01A-12D-2078-08	45	45	0	35	0	coding only	1	28836904	...	10	34	45	3.467779e-07	1.179045e-06	1.560500e-06	-5.806736e+00	...	1	28780708	...	3.474550e-08
TCGA-CR-6491-01A-11D-1870-08	177	176	1	122	5.649718e-03	coding only	1	28836904	...	54	115	177	1.872600e-06	3.987945e-06	6.137968e-06	-5.211975e+00	...	7	28780708	...	2.432185e-07
TCGA-CR-6492-01A-12D-2078-08	74	72	2	54	2.702703e-02	coding only	1	28836904	...	18	53	74	6.242002e-07	1.837923e-06	2.566156e-06	-5.590717e+00	...	1	28780708	...	3.474550e-08
TCGA-CR-6493-01A-11D-1870-08	44	43	1	35	2.272727e-02	coding only	1	28836904	...	8	32	44	2.774223e-07	1.109689e-06	1.525823e-06	-5.816496e+00	...	3	28780708	...	1.042365e-07
TCGA-CR-7364-01A-11D-2012-08	523	515	8	398	1.529637e-02	coding only	1	28836904	...	117	378	521	4.057301e-06	1.310820e-05	1.806713e-05	-4.743111e+00	...	18	28780708	...	6.254189e-07
TCGA-CR-7365-01A-11D-2012-08	193	190	3	145	1.554404e-02	coding only	1	28836904	...	45	134	193	1.560500e-06	4.646823e-06	6.692813e-06	-5.174391e+00	...	11	28780708	...	3.822005e-07
TCGA-CR-7367-01A-11D-2012-08	208	205	3	157	1.442308e-02	coding only	1	28836904	...	48	148	207	1.664534e-06	5.132312e-06	7.178302e-06	-5.143978e+00	...	8	28780708	...	2.779640e-07
TCGA-CR-7368-01A-11D-2129-08	246	241	5	182	2.032520e-02	coding only	1	28836904	...	58	172	245	2.011312e-06	5.964579e-06	8.496058e-06	-5.070783e+00	...	10	28780708	...	3.474550e-07
TCGA-CR-7369-01A-11D-2129-08	86	84	2	66	2.325581e-02	coding only	1	28836904	...	18	61	86	6.242002e-07	2.115345e-06	2.982290e-06	-5.525450e+00	...	5	28780708	...	1.737275e-07
TCGA-CR-7370-01A-11D-2129-08	620	615	5	450	8.064516e-03	coding only	1	28836904	...	165	430	619	5.721835e-06	1.491145e-05	2.146555e-05	-4.668258e+00	...	19	28780708	...	6.601644e-07
TCGA-CR-7371-01A-11D-2012-08	344	338	6	254	1.744186e-02	coding only	1	28836904	...	84	248	344	2.912934e-06	8.600091e-06	1.192916e-05	-4.923390e+00	...	6	28780708	...	2.084730e-07
TCGA-CR-7372-01A-11D-2012-08	59	57	2	44	3.389831e-02	coding only	1	28836904	...	13	40	59	4.508112e-07	1.387111e-06	2.045989e-06	-5.689097e+00	...	4	28780708	...	1.389820e-07
TCGA-CR-7373-01A-11D-2012-08	140	139	1	96	7.142857e-03	coding only	1	28836904	...	43	91	140	1.491145e-06	3.155679e-06	4.854890e-06	-5.313821e+00	...	5	28780708	...	1.737275e-07
TCGA-CR-7374-01A-11D-2012-08	417	409	8	320	1.918465e-02	coding only	1	28836904	...	89	310	417	3.086323e-06	1.075011e-05	1.446064e-05	-4.839813e+00	...	10	28780708	...	3.474550e-07
TCGA-CR-7376-01A-11D-2129-08	69	69	0	55	0	coding only	1	28836904	...	14	53	69	4.854890e-07	1.837923e-06	2.392767e-06	-5.621100e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-7377-01A-11D-2012-08	151	149	2	107	1.324503e-02	coding only	1	28836904	...	42	105	151	1.456467e-06	3.641168e-06	5.236346e-06	-5.280972e+00	...	1	28780708	...	3.474550e-08
TCGA-CR-7379-01A-11D-2012-08	171	171	0	116	0	coding only	1	28836904	...	55	111	171	1.907278e-06	3.849234e-06	5.929901e-06	-5.226953e+00	...	4	28780708	...	1.389820e-07
TCGA-CR-7380-01A-11D-2012-08	113	113	0	89	0	coding only	1	28836904	...	24	79	113	8.322669e-07	2.739545e-06	3.918590e-06	-5.406870e+00	...	10	28780708	...	3.474550e-07
TCGA-CR-7382-01A-11D-2129-08	100	99	1	76	1.000000e-02	coding only	1	28836904	...	23	73	100	7.975891e-07	2.531478e-06	3.467779e-06	-5.459949e+00	...	3	28780708	...	1.042365e-07
TCGA-CR-7383-01A-11D-2129-08	143	141	2	110	1.398601e-02	coding only	1	28836904	...	31	97	143	1.075011e-06	3.363745e-06	4.958923e-06	-5.304613e+00	...	12	28780708	...	4.169460e-07
TCGA-CR-7385-01A-11D-2012-08	55	55	0	43	0	coding only	1	28836904	...	12	41	55	4.161334e-07	1.421789e-06	1.907278e-06	-5.719586e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-7386-01A-11D-2012-08	219	218	1	158	4.566210e-03	coding only	1	28836904	...	60	155	218	2.080667e-06	5.375057e-06	7.559757e-06	-5.121492e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-7388-01A-11D-2012-08	832	819	13	632	1.562500e-02	coding only	1	28836904	...	187	615	832	6.484746e-06	2.132684e-05	2.885192e-05	-4.539825e+00	...	17	28780708	...	5.906734e-07
TCGA-CR-7389-01A-11D-2012-08	131	130	1	95	7.633588e-03	coding only	1	28836904	...	35	90	131	1.213723e-06	3.121001e-06	4.542790e-06	-5.342677e+00	...	5	28780708	...	1.737275e-07
TCGA-CR-7390-01A-11D-2012-08	163	161	2	109	1.226994e-02	coding only	1	28836904	...	52	103	163	1.803245e-06	3.571812e-06	5.652479e-06	-5.247761e+00	...	6	28780708	...	2.084730e-07
TCGA-CR-7391-01A-11D-2012-08	12	12	0	10	0	coding only	1	28836904	...	2	9	12	6.935557e-08	3.121001e-07	4.161334e-07	-6.380767e+00	...	1	28780708	...	3.474550e-08
TCGA-CR-7392-01A-11D-2012-08	39	39	0	32	0	coding only	1	28836904	...	7	30	39	2.427445e-07	1.040334e-06	1.352434e-06	-5.868884e+00	...	2	28780708	...	6.949099e-08
TCGA-CR-7393-01A-11D-2012-08	4	4	0	3	0	coding only	1	28836904	...	1	2	4	3.467779e-08	6.935557e-08	1.387111e-07	-6.857889e+00	...	1	28780708	...	3.474550e-08
TCGA-CR-7394-01A-11D-2012-08	213	210	3	148	1.408451e-02	coding only	1	28836904	...	62	148	213	2.150023e-06	5.132312e-06	7.386369e-06	-5.131569e+00	...	0	28780708	...	0
TCGA-CR-7395-01A-11D-2012-08	206	203	3	141	1.456311e-02	coding only	1	28836904	...	62	134	206	2.150023e-06	4.646823e-06	7.143624e-06	-5.146081e+00	...	7	28780708	...	2.432185e-07
TCGA-CR-7397-01A-11D-2012-08	54	54	0	39	0	coding only	1	28836904	...	15	39	54	5.201668e-07	1.352434e-06	1.872600e-06	-5.727555e+00	...	0	28780708	...	0
TCGA-CR-7398-01A-11D-2012-08	393	388	5	290	1.272265e-02	coding only	1	28836904	...	98	273	393	3.398423e-06	9.467036e-06	1.362837e-05	-4.865556e+00	...	17	28780708	...	5.906734e-07
TCGA-CR-7399-01A-11D-2012-08	320	312	8	249	2.500000e-02	coding only	1	28836904	...	62	239	319	2.150023e-06	8.287991e-06	1.106221e-05	-4.956158e+00	...	10	28780708	...	3.474550e-07
TCGA-CR-7401-01A-11D-2012-08	105	104	1	70	9.523810e-03	coding only	1	28836904	...	34	69	105	1.179045e-06	2.392767e-06	3.641168e-06	-5.438759e+00	...	1	28780708	...	3.474550e-08
TCGA-CR-7402-01A-11D-2012-08	1094	1083	11	840	1.005484e-02	coding only	1	28836904	...	241	801	1092	8.357347e-06	2.777691e-05	3.786814e-05	-4.421726e+00	...	39	28780708	...	1.355074e-06
TCGA-CR-7404-01A-11D-2129-08	143	140	3	102	2.097902e-02	coding only	1	28836904	...	38	98	143	1.317756e-06	3.398423e-06	4.958923e-06	-5.304613e+00	...	4	28780708	...	1.389820e-07
TCGA-CV-5430-01A-02D-1683-08	183	176	7	131	3.825137e-02	exome+100bp flanks	2	35887302	...	45	120	183	1.253925e-06	3.343801e-06	5.099297e-06	-5.292490e+00	...	11	32163822	...	3.419992e-07
TCGA-CV-5431-01A-01D-1512-08	103	101	2	73	1.941748e-02	coding only	1	28836904	...	28	69	103	9.709780e-07	2.392767e-06	3.571812e-06	-5.447111e+00	...	4	28780708	...	1.389820e-07
TCGA-CV-5432-01A-02D-1683-08	320	315	5	230	1.562500e-02	coding only	1	28836904	...	85	223	320	2.947612e-06	7.733146e-06	1.109689e-05	-4.954799e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-5434-01A-01D-1683-08	173	172	1	139	5.780347e-03	coding only	1	28836904	...	33	129	173	1.144367e-06	4.473434e-06	5.999257e-06	-5.221903e+00	...	10	28780708	...	3.474550e-07
TCGA-CV-5435-01A-01D-1683-08	140	135	5	98	3.571429e-02	exome+100bp flanks	2	35887302	...	37	89	140	1.031005e-06	2.479986e-06	3.901101e-06	-5.408813e+00	...	9	32163822	...	2.798175e-07
TCGA-CV-5436-01A-01D-1512-08	130	128	2	98	1.538462e-02	coding only	1	28836904	...	30	82	130	1.040334e-06	2.843578e-06	4.508112e-06	-5.346005e+00	...	16	28780708	...	5.559280e-07
TCGA-CV-5439-01A-01D-1683-08	128	127	1	92	7.812500e-03	coding only	1	28836904	...	35	85	128	1.213723e-06	2.947612e-06	4.438757e-06	-5.352739e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-5440-01A-01D-1512-08	138	136	2	103	1.449275e-02	coding only	1	28836904	...	33	97	138	1.144367e-06	3.363745e-06	4.785535e-06	-5.320070e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-5441-01A-01D-1512-08	446	441	5	337	1.121076e-02	coding only	1	28836904	...	104	312	446	3.606490e-06	1.081947e-05	1.546629e-05	-4.810614e+00	...	25	28780708	...	8.686374e-07
TCGA-CV-5442-01A-01D-1512-08	281	279	2	223	7.117438e-03	coding only	1	28836904	...	56	214	281	1.941956e-06	7.421046e-06	9.744458e-06	-5.011242e+00	...	9	28780708	...	3.127095e-07
TCGA-CV-5443-01A-01D-1512-08	72	71	1	48	1.388889e-02	coding only	1	28836904	...	23	45	72	7.975891e-07	1.560500e-06	2.496801e-06	-5.602616e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-5444-01A-02D-1512-08	170	165	5	118	2.941176e-02	coding only	1	28836904	...	47	108	170	1.629856e-06	3.745201e-06	5.895224e-06	-5.229500e+00	...	10	28780708	...	3.474550e-07
TCGA-CV-5966-01A-11D-1683-08	132	129	3	100	2.272727e-02	coding only	1	28836904	...	29	96	132	1.005656e-06	3.329068e-06	4.577468e-06	-5.339375e+00	...	4	28780708	...	1.389820e-07
TCGA-CV-5970-01A-11D-1683-08	235	231	4	171	1.702128e-02	coding only	1	28836904	...	60	166	235	2.080667e-06	5.756513e-06	8.149280e-06	-5.088881e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-5971-01A-11D-1683-08	37	37	0	24	0	coding only	1	28836904	...	13	22	37	4.508112e-07	7.629113e-07	1.283078e-06	-5.891747e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-5973-01A-11D-1683-08	77	77	0	52	0	coding only	1	28836904	...	25	44	77	8.669447e-07	1.525823e-06	2.670190e-06	-5.573458e+00	...	8	28780708	...	2.779640e-07
TCGA-CV-5976-01A-11D-1683-08	94	93	1	68	1.063830e-02	coding only	1	28836904	...	25	63	94	8.669447e-07	2.184701e-06	3.259712e-06	-5.486821e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-5977-01A-11D-1683-08	117	117	0	80	0	coding only	1	28836904	...	37	74	117	1.283078e-06	2.566156e-06	4.057301e-06	-5.391763e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-5978-01A-11D-1683-08	208	206	2	162	9.615385e-03	coding only	1	28836904	...	44	155	208	1.525823e-06	5.375057e-06	7.212980e-06	-5.141885e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-5979-01A-11D-1683-08	44	44	0	36	0	coding only	1	28836904	...	8	35	44	2.774223e-07	1.213723e-06	1.525823e-06	-5.816496e+00	...	1	28780708	...	3.474550e-08
TCGA-CV-6003-01A-11D-1683-08	124	123	1	98	8.064516e-03	coding only	1	28836904	...	25	88	124	8.669447e-07	3.051645e-06	4.300046e-06	-5.366527e+00	...	10	28780708	...	3.474550e-07
TCGA-CV-6433-01A-11D-1683-08	74	74	0	57	0	coding only	1	28836904	...	17	50	74	5.895224e-07	1.733889e-06	2.566156e-06	-5.590717e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-6436-01A-11D-1683-08	90	90	0	69	0	coding only	1	28836904	...	21	66	90	7.282335e-07	2.288734e-06	3.121001e-06	-5.505706e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-6441-01A-11D-1683-08	272	267	5	199	1.838235e-02	coding only	1	28836904	...	68	183	272	2.358089e-06	6.346035e-06	9.432358e-06	-5.025380e+00	...	16	28780708	...	5.559280e-07
TCGA-CV-6933-01A-11D-1912-08	138	135	3	104	2.173913e-02	coding only	1	28836904	...	31	100	138	1.075011e-06	3.467779e-06	4.785535e-06	-5.320070e+00	...	4	28780708	...	1.389820e-07
TCGA-CV-6934-01A-11D-1912-08	112	109	3	83	2.678571e-02	coding only	1	28836904	...	26	77	112	9.016224e-07	2.670190e-06	3.883912e-06	-5.410731e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-6935-01A-11D-1912-08	255	249	6	197	2.352941e-02	coding only	1	28836904	...	52	187	254	1.803245e-06	6.484746e-06	8.808158e-06	-5.055115e+00	...	9	28780708	...	3.127095e-07
TCGA-CV-6936-01A-11D-1912-08	320	319	1	235	3.125000e-03	coding only	1	28836904	...	84	228	320	2.912934e-06	7.906535e-06	1.109689e-05	-4.954799e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-6937-01A-11D-2012-08	156	152	4	114	2.564103e-02	coding only	1	28836904	...	38	107	156	1.317756e-06	3.710523e-06	5.409735e-06	-5.266824e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-6938-01A-11D-1912-08	171	169	2	138	1.169591e-02	coding only	1	28836904	...	31	126	171	1.075011e-06	4.369401e-06	5.929901e-06	-5.226953e+00	...	12	28780708	...	4.169460e-07
TCGA-CV-6939-01A-11D-1912-08	56	53	3	41	5.357143e-02	coding only	1	28836904	...	12	33	56	4.161334e-07	1.144367e-06	1.941956e-06	-5.711761e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-6940-01A-11D-1912-08	153	153	0	113	0	coding only	1	28836904	...	40	109	153	1.387111e-06	3.779879e-06	5.305701e-06	-5.275257e+00	...	4	28780708	...	1.389820e-07
TCGA-CV-6941-01A-11D-1912-08	166	160	6	118	3.614458e-02	exome+100bp flanks	2	35887302	...	42	112	166	1.170330e-06	3.120881e-06	4.625592e-06	-5.334833e+00	...	6	32163822	...	1.865450e-07
TCGA-CV-6942-01A-21D-2012-08	262	259	3	199	1.145038e-02	coding only	1	28836904	...	60	192	262	2.080667e-06	6.658135e-06	9.085580e-06	-5.041647e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-6943-01A-11D-1912-08	75	74	1	56	1.333333e-02	coding only	1	28836904	...	18	53	75	6.242002e-07	1.837923e-06	2.600834e-06	-5.584887e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-6945-01A-11D-1912-08	150	148	2	108	1.333333e-02	coding only	1	28836904	...	40	100	150	1.387111e-06	3.467779e-06	5.201668e-06	-5.283857e+00	...	8	28780708	...	2.779640e-07
TCGA-CV-6948-01A-11D-1912-08	234	231	3	174	1.282051e-02	coding only	1	28836904	...	57	161	234	1.976634e-06	5.583124e-06	8.114602e-06	-5.090733e+00	...	13	28780708	...	4.516915e-07
TCGA-CV-6950-01A-11D-1912-08	69	67	2	51	2.898551e-02	coding only	1	28836904	...	16	48	69	5.548446e-07	1.664534e-06	2.392767e-06	-5.621100e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-6951-01A-11D-1912-08	155	152	3	116	1.935484e-02	coding only	1	28836904	...	36	108	155	1.248400e-06	3.745201e-06	5.375057e-06	-5.269617e+00	...	8	28780708	...	2.779640e-07
TCGA-CV-6952-01A-11D-1912-08	199	198	1	149	5.025126e-03	coding only	1	28836904	...	49	138	199	1.699212e-06	4.785535e-06	6.900880e-06	-5.161096e+00	...	11	28780708	...	3.822005e-07
TCGA-CV-6953-01A-11D-1912-08	120	119	1	95	8.333333e-03	coding only	1	28836904	...	24	94	120	8.322669e-07	3.259712e-06	4.161334e-06	-5.380767e+00	...	1	28780708	...	3.474550e-08
TCGA-CV-6954-01A-11D-1912-08	189	184	5	142	2.645503e-02	coding only	1	28836904	...	42	136	188	1.456467e-06	4.716179e-06	6.519424e-06	-5.185791e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-6955-01A-11D-2012-08	154	152	2	114	1.298701e-02	coding only	1	28836904	...	38	106	154	1.317756e-06	3.675845e-06	5.340379e-06	-5.272428e+00	...	8	28780708	...	2.779640e-07
TCGA-CV-6956-01A-21D-2012-08	225	221	4	156	1.777778e-02	coding only	1	28836904	...	65	149	225	2.254056e-06	5.166990e-06	7.802502e-06	-5.107766e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-6959-01A-11D-1912-08	76	73	3	53	3.947368e-02	coding only	1	28836904	...	20	48	76	6.935557e-07	1.664534e-06	2.635512e-06	-5.579135e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-6960-01A-41D-2012-08	204	203	1	155	4.901961e-03	coding only	1	28836904	...	48	140	204	1.664534e-06	4.854890e-06	7.074268e-06	-5.150318e+00	...	15	28780708	...	5.211825e-07
TCGA-CV-6961-01A-21D-1912-08	685	674	11	501	1.605839e-02	coding only	1	28836904	...	173	493	685	5.999257e-06	1.709615e-05	2.375428e-05	-4.624258e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-6962-01A-11D-1912-08	170	169	1	143	5.882353e-03	coding only	1	28836904	...	26	127	170	9.016224e-07	4.404079e-06	5.895224e-06	-5.229500e+00	...	16	28780708	...	5.559280e-07
TCGA-CV-7089-01A-11D-2012-08	193	189	4	146	2.072539e-02	coding only	1	28836904	...	43	139	193	1.491145e-06	4.820212e-06	6.692813e-06	-5.174391e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-7090-01A-11D-2012-08	58	56	2	41	3.448276e-02	coding only	1	28836904	...	15	39	58	5.201668e-07	1.352434e-06	2.011312e-06	-5.696521e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-7091-01A-11D-2012-08	159	157	2	122	1.257862e-02	coding only	1	28836904	...	35	113	159	1.213723e-06	3.918590e-06	5.513768e-06	-5.258552e+00	...	9	28780708	...	3.127095e-07
TCGA-CV-7095-01A-21D-2012-08	279	274	5	207	1.792115e-02	coding only	1	28836904	...	67	202	279	2.323412e-06	7.004913e-06	9.675102e-06	-5.014344e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-7097-01A-11D-2012-08	110	108	2	76	1.818182e-02	coding only	1	28836904	...	32	68	110	1.109689e-06	2.358089e-06	3.814557e-06	-5.418556e+00	...	8	28780708	...	2.779640e-07
TCGA-CV-7099-01A-41D-2012-08	350	346	4	255	1.142857e-02	coding only	1	28836904	...	91	245	350	3.155679e-06	8.496058e-06	1.213723e-05	-4.915881e+00	...	10	28780708	...	3.474550e-07
TCGA-CV-7100-01A-11D-2012-08	21	20	1	16	4.761905e-02	coding only	1	28836904	...	4	9	21	1.387111e-07	3.121001e-07	7.282335e-07	-6.137729e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-7101-01A-11D-2012-08	231	227	4	174	1.731602e-02	coding only	1	28836904	...	53	164	231	1.837923e-06	5.687157e-06	8.010569e-06	-5.096337e+00	...	10	28780708	...	3.474550e-07
TCGA-CV-7102-01A-11D-2012-08	168	164	4	128	2.380952e-02	coding only	1	28836904	...	36	125	168	1.248400e-06	4.334723e-06	5.825868e-06	-5.234639e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-7103-01A-21D-2012-08	56	54	2	41	3.571429e-02	coding only	1	28836904	...	13	34	56	4.508112e-07	1.179045e-06	1.941956e-06	-5.711761e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-7104-01A-11D-2012-08	121	117	4	91	3.305785e-02	coding only	1	28836904	...	26	82	121	9.016224e-07	2.843578e-06	4.196012e-06	-5.377163e+00	...	9	28780708	...	3.127095e-07
TCGA-CV-7177-01A-11D-2012-08	145	140	5	107	3.448276e-02	exome+100bp flanks	2	35887302	...	33	96	145	9.195453e-07	2.675041e-06	4.040426e-06	-5.393573e+00	...	11	32163822	...	3.419992e-07
TCGA-CV-7178-01A-21D-2012-08	138	137	1	100	7.246377e-03	coding only	1	28836904	...	37	94	138	1.283078e-06	3.259712e-06	4.785535e-06	-5.320070e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-7180-01A-11D-2012-08	78	77	1	58	1.282051e-02	coding only	1	28836904	...	19	56	78	6.588779e-07	1.941956e-06	2.704867e-06	-5.567854e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-7183-01A-11D-2012-08	79	79	0	62	0	coding only	1	28836904	...	17	53	79	5.895224e-07	1.837923e-06	2.739545e-06	-5.562322e+00	...	9	28780708	...	3.127095e-07
TCGA-CV-7235-01A-11D-2012-08	161	159	2	116	1.242236e-02	coding only	1	28836904	...	43	111	161	1.491145e-06	3.849234e-06	5.583124e-06	-5.253123e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-7236-01A-11D-2012-08	63	62	1	42	1.587302e-02	coding only	1	28836904	...	20	35	63	6.935557e-07	1.213723e-06	2.184701e-06	-5.660608e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-7238-01A-11D-2012-08	78	77	1	56	1.282051e-02	coding only	1	28836904	...	21	54	78	7.282335e-07	1.872600e-06	2.704867e-06	-5.567854e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-7242-01A-11D-2012-08	345	342	3	274	8.695652e-03	coding only	1	28836904	...	68	263	345	2.358089e-06	9.120258e-06	1.196384e-05	-4.922130e+00	...	11	28780708	...	3.822005e-07
TCGA-CV-7243-01A-11D-2012-08	86	86	0	65	0	coding only	1	28836904	...	21	58	86	7.282335e-07	2.011312e-06	2.982290e-06	-5.525450e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-7245-01A-11D-2012-08	577	570	7	434	1.213172e-02	coding only	1	28836904	...	136	419	577	4.716179e-06	1.452999e-05	2.000908e-05	-4.698773e+00	...	15	28780708	...	5.211825e-07
TCGA-CV-7247-01A-11D-2012-08	87	86	1	68	1.149425e-02	coding only	1	28836904	...	18	60	87	6.242002e-07	2.080667e-06	3.016967e-06	-5.520429e+00	...	8	28780708	...	2.779640e-07
TCGA-CV-7248-01A-11D-2012-08	337	332	5	251	1.483680e-02	coding only	1	28836904	...	81	242	337	2.808901e-06	8.392024e-06	1.168641e-05	-4.932319e+00	...	9	28780708	...	3.127095e-07
TCGA-CV-7250-01A-11D-2012-08	245	241	4	176	1.632653e-02	coding only	1	28836904	...	65	161	245	2.254056e-06	5.583124e-06	8.496058e-06	-5.070783e+00	...	15	28780708	...	5.211825e-07
TCGA-CV-7252-01A-11D-2012-08	272	260	12	189	4.411765e-02	exome+100bp flanks	2	35887302	...	71	175	272	1.978416e-06	4.876377e-06	7.579282e-06	-5.120372e+00	...	14	32163822	...	4.352717e-07
TCGA-CV-7253-01A-11D-2012-08	218	213	5	170	2.293578e-02	coding only	1	28836904	...	43	157	218	1.491145e-06	5.444412e-06	7.559757e-06	-5.121492e+00	...	13	28780708	...	4.516915e-07
TCGA-CV-7254-01A-11D-2012-08	295	289	6	222	2.033898e-02	coding only	1	28836904	...	67	209	295	2.323412e-06	7.247657e-06	1.022995e-05	-4.990127e+00	...	13	28780708	...	4.516915e-07
TCGA-CV-7255-01A-11D-2012-08	131	130	1	102	7.633588e-03	coding only	1	28836904	...	28	87	131	9.709780e-07	3.016967e-06	4.542790e-06	-5.342677e+00	...	15	28780708	...	5.211825e-07
TCGA-CV-7261-01A-11D-2012-08	135	134	1	106	7.407407e-03	coding only	1	28836904	...	28	103	135	9.709780e-07	3.571812e-06	4.681501e-06	-5.329615e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-7263-01A-11D-2012-08	127	124	3	102	2.362205e-02	coding only	1	28836904	...	22	97	127	7.629113e-07	3.363745e-06	4.404079e-06	-5.356145e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-7406-01A-11D-2078-08	232	230	2	167	8.620690e-03	coding only	1	28836904	...	63	155	232	2.184701e-06	5.375057e-06	8.045246e-06	-5.094461e+00	...	11	28780708	...	3.822005e-07
TCGA-CV-7407-01A-11D-2078-08	152	148	4	108	2.631579e-02	coding only	1	28836904	...	40	103	152	1.387111e-06	3.571812e-06	5.271024e-06	-5.278105e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-7410-01A-21D-2078-08	53	53	0	40	0	coding only	1	28836904	...	13	37	53	4.508112e-07	1.283078e-06	1.837923e-06	-5.735673e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-7411-01A-11D-2078-08	139	139	0	103	0	coding only	1	28836904	...	36	97	139	1.248400e-06	3.363745e-06	4.820212e-06	-5.316934e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-7413-01A-11D-2078-08	88	86	2	63	2.272727e-02	coding only	1	28836904	...	23	61	88	7.975891e-07	2.115345e-06	3.051645e-06	-5.515466e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-7414-01A-11D-2078-08	318	313	5	228	1.572327e-02	coding only	1	28836904	...	85	225	317	2.947612e-06	7.802502e-06	1.099286e-05	-4.958889e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-7415-01A-11D-2078-08	97	93	4	65	4.123711e-02	coding only	1	28836904	...	28	63	97	9.709780e-07	2.184701e-06	3.363745e-06	-5.473177e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-7416-01A-11D-2078-08	89	89	0	66	0	coding only	1	28836904	...	23	60	89	7.975891e-07	2.080667e-06	3.086323e-06	-5.510559e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-7418-01A-11D-2078-08	196	192	4	146	2.040816e-02	coding only	1	28836904	...	46	134	196	1.595178e-06	4.646823e-06	6.796846e-06	-5.167693e+00	...	12	28780708	...	4.169460e-07
TCGA-CV-7421-01A-11D-2078-08	82	81	1	53	1.219512e-02	coding only	1	28836904	...	28	48	82	9.709780e-07	1.664534e-06	2.843578e-06	-5.546135e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-7422-01A-21D-2078-08	161	158	3	115	1.863354e-02	coding only	1	28836904	...	43	112	161	1.491145e-06	3.883912e-06	5.583124e-06	-5.253123e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-7423-01A-11D-2078-08	100	98	2	65	2.000000e-02	coding only	1	28836904	...	33	58	100	1.144367e-06	2.011312e-06	3.467779e-06	-5.459949e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-7424-01A-11D-2078-08	228	227	1	170	4.385965e-03	coding only	1	28836904	...	57	163	228	1.976634e-06	5.652479e-06	7.906535e-06	-5.102014e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-7425-01A-11D-2078-08	141	136	5	97	3.546099e-02	exome+100bp flanks	2	35887302	...	39	93	141	1.086735e-06	2.591446e-06	3.928966e-06	-5.405722e+00	...	4	32163822	...	1.243633e-07
TCGA-CV-7427-01A-11D-2078-08	517	509	8	386	1.547389e-02	coding only	1	28836904	...	123	379	517	4.265368e-06	1.314288e-05	1.792842e-05	-4.746458e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-7429-01A-11D-2129-08	62	62	0	46	0	coding only	1	28836904	...	16	41	61	5.548446e-07	1.421789e-06	2.115345e-06	-5.674619e+00	...	4	28780708	...	1.389820e-07
TCGA-CV-7430-01A-11D-2129-08	125	120	5	92	4.000000e-02	exome+100bp flanks	2	35887302	...	28	86	125	7.802203e-07	2.396391e-06	3.483126e-06	-5.458031e+00	...	6	32163822	...	1.865450e-07
TCGA-CV-7432-01A-11D-2129-08	188	184	4	138	2.127660e-02	coding only	1	28836904	...	46	126	188	1.595178e-06	4.369401e-06	6.519424e-06	-5.185791e+00	...	12	28780708	...	4.169460e-07
TCGA-CV-7433-01A-11D-2129-08	147	145	2	108	1.360544e-02	coding only	1	28836904	...	37	103	147	1.283078e-06	3.571812e-06	5.097635e-06	-5.292631e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-7434-01A-11D-2129-08	111	109	2	84	1.801802e-02	coding only	1	28836904	...	25	78	111	8.669447e-07	2.704867e-06	3.849234e-06	-5.414626e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-7435-01A-11D-2129-08	94	94	0	74	0	coding only	1	28836904	...	20	67	94	6.935557e-07	2.323412e-06	3.259712e-06	-5.486821e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-7437-01A-21D-2129-08	161	161	0	119	0	coding only	1	28836904	...	42	109	161	1.456467e-06	3.779879e-06	5.583124e-06	-5.253123e+00	...	10	28780708	...	3.474550e-07
TCGA-CV-7438-01A-21D-2129-08	116	113	3	84	2.586207e-02	coding only	1	28836904	...	29	78	116	1.005656e-06	2.704867e-06	4.022623e-06	-5.395491e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-7440-01A-11D-2129-08	247	242	5	200	2.024291e-02	coding only	1	28836904	...	42	180	247	1.456467e-06	6.242002e-06	8.565413e-06	-5.067252e+00	...	20	28780708	...	6.949099e-07
TCGA-CV-7446-01A-11D-2229-08	172	167	5	128	2.906977e-02	coding only	1	28836904	...	39	115	172	1.352434e-06	3.987945e-06	5.964579e-06	-5.224420e+00	...	13	28780708	...	4.516915e-07
TCGA-CV-7568-01A-11D-2229-08	2837	2799	38	1867	1.339443e-02	coding only	1	28836904	...	932	1858	2833	3.231970e-05	6.443133e-05	9.824217e-05	-4.007702e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-A45O-01A-21D-A24D-08	177	175	2	143	1.129944e-02	coding only	1	28836904	...	32	143	177	1.109689e-06	4.958923e-06	6.137968e-06	-5.211975e+00	...	0	28780708	...	0
TCGA-CV-A45P-01A-11D-A24D-08	185	183	2	134	1.081081e-02	coding only	1	28836904	...	49	133	185	1.699212e-06	4.612146e-06	6.415391e-06	-5.192777e+00	...	1	28780708	...	3.474550e-08
TCGA-CV-A45Q-01A-11D-A24D-08	329	326	3	239	9.118541e-03	coding only	1	28836904	...	87	232	329	3.016967e-06	8.045246e-06	1.140899e-05	-4.942753e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-A45R-01A-11D-A24D-08	106	103	3	77	2.830189e-02	coding only	1	28836904	...	26	75	106	9.016224e-07	2.600834e-06	3.675845e-06	-5.434643e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-A45T-01A-11D-A24D-08	19	18	1	13	5.263158e-02	coding only	1	28836904	...	5	12	19	1.733889e-07	4.161334e-07	6.588779e-07	-6.181195e+00	...	1	28780708	...	3.474550e-08
TCGA-CV-A45U-01A-12D-A24D-08	242	239	3	169	1.239669e-02	coding only	1	28836904	...	70	162	242	2.427445e-06	5.617801e-06	8.392024e-06	-5.076133e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-A45V-01A-21D-A25D-08	127	126	1	93	7.874016e-03	coding only	1	28836904	...	33	84	127	1.144367e-06	2.912934e-06	4.404079e-06	-5.356145e+00	...	9	28780708	...	3.127095e-07
TCGA-CV-A45W-01A-11D-A25D-08	701	693	8	549	1.141227e-02	coding only	1	28836904	...	144	521	700	4.993601e-06	1.806713e-05	2.427445e-05	-4.614851e+00	...	27	28780708	...	9.381284e-07
TCGA-CV-A45X-01A-21D-A25D-08	132	130	2	88	1.515152e-02	coding only	1	28836904	...	42	85	132	1.456467e-06	2.947612e-06	4.577468e-06	-5.339375e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-A45Y-01A-11D-A25D-08	91	91	0	67	0	coding only	1	28836904	...	24	65	91	8.322669e-07	2.254056e-06	3.155679e-06	-5.500907e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-A45Z-01A-21D-A25D-08	829	811	18	622	2.171291e-02	coding only	1	28836904	...	189	603	828	6.554102e-06	2.091071e-05	2.871321e-05	-4.541918e+00	...	19	28780708	...	6.601644e-07
TCGA-CV-A460-01A-21D-A25D-08	79	78	1	63	1.265823e-02	coding only	1	28836904	...	15	59	79	5.201668e-07	2.045989e-06	2.739545e-06	-5.562322e+00	...	4	28780708	...	1.389820e-07
TCGA-CV-A461-01A-41D-A25Y-08	688	682	6	517	8.720930e-03	coding only	1	28836904	...	165	482	688	5.721835e-06	1.671469e-05	2.385832e-05	-4.622360e+00	...	35	28780708	...	1.216092e-06
TCGA-CV-A463-01A-11D-A25Y-08	252	245	7	179	2.777778e-02	coding only	1	28836904	...	66	177	252	2.288734e-06	6.137968e-06	8.738802e-06	-5.058548e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-A464-01A-11D-A25Y-08	35	34	1	19	2.857143e-02	coding only	1	28836904	...	15	18	35	5.201668e-07	6.242002e-07	1.213723e-06	-5.915881e+00	...	1	28780708	...	3.474550e-08
TCGA-CV-A465-01A-11D-A25Y-08	47	47	0	37	0	coding only	1	28836904	...	10	32	47	3.467779e-07	1.109689e-06	1.629856e-06	-5.787851e+00	...	5	28780708	...	1.737275e-07
TCGA-CV-A468-01A-11D-A25Y-08	642	634	8	426	1.246106e-02	coding only	1	28836904	...	208	420	642	7.212980e-06	1.456467e-05	2.226314e-05	-4.652414e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-A6JD-01A-11D-A31L-08	109	106	3	83	2.752294e-02	coding only	1	28836904	...	23	77	109	7.975891e-07	2.670190e-06	3.779879e-06	-5.422522e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-A6JE-01A-11D-A31L-08	159	156	3	120	1.886792e-02	coding only	1	28836904	...	36	113	159	1.248400e-06	3.918590e-06	5.513768e-06	-5.258552e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-A6JM-01A-11D-A31L-08	338	330	8	221	2.366864e-02	coding only	1	28836904	...	109	211	338	3.779879e-06	7.317013e-06	1.172109e-05	-4.931032e+00	...	10	28780708	...	3.474550e-07
TCGA-CV-A6JN-01A-11D-A31L-08	92	92	0	70	0	coding only	1	28836904	...	22	68	92	7.629113e-07	2.358089e-06	3.190356e-06	-5.496161e+00	...	2	28780708	...	6.949099e-08
TCGA-CV-A6JO-01B-11D-A34J-08	92	92	0	70	0	coding only	1	28836904	...	22	62	90	7.629113e-07	2.150023e-06	3.121001e-06	-5.505706e+00	...	6	28780708	...	2.084730e-07
TCGA-CV-A6JT-01A-11D-A31L-08	67	66	1	50	1.492537e-02	coding only	1	28836904	...	16	49	67	5.548446e-07	1.699212e-06	2.323412e-06	-5.633874e+00	...	1	28780708	...	3.474550e-08
TCGA-CV-A6JU-01A-11D-A31L-08	163	162	1	118	6.134969e-03	coding only	1	28836904	...	44	103	163	1.525823e-06	3.571812e-06	5.652479e-06	-5.247761e+00	...	15	28780708	...	5.211825e-07
TCGA-CV-A6JY-01A-11D-A31L-08	109	108	1	87	9.174312e-03	coding only	1	28836904	...	21	84	109	7.282335e-07	2.912934e-06	3.779879e-06	-5.422522e+00	...	3	28780708	...	1.042365e-07
TCGA-CV-A6JZ-01A-11D-A31L-08	136	136	0	100	0	coding only	1	28836904	...	36	93	136	1.248400e-06	3.225034e-06	4.716179e-06	-5.326410e+00	...	7	28780708	...	2.432185e-07
TCGA-CV-A6K0-01B-21D-A31L-08	32	32	0	22	0	coding only	1	28836904	...	10	21	32	3.467779e-07	7.282335e-07	1.109689e-06	-5.954799e+00	...	1	28780708	...	3.474550e-08
TCGA-CV-A6K1-01A-11D-A31L-08	604	588	16	449	2.649007e-02	coding only	1	28836904	...	139	371	604	4.820212e-06	1.286546e-05	2.094538e-05	-4.678912e+00	...	78	28780708	...	2.710149e-06
TCGA-CV-A6K2-01A-11D-A31L-08	825	811	14	583	1.696970e-02	coding only	1	28836904	...	228	574	823	7.906535e-06	1.990505e-05	2.853982e-05	-4.544549e+00	...	6	28780708	...	2.084730e-07
TCGA-CX-7082-01A-11D-2012-08	111	111	0	83	0	coding only	1	28836904	...	28	78	111	9.709780e-07	2.704867e-06	3.849234e-06	-5.414626e+00	...	5	28780708	...	1.737275e-07
TCGA-CX-7085-01A-21D-2012-08	173	171	2	138	1.156069e-02	coding only	1	28836904	...	33	137	173	1.144367e-06	4.750857e-06	5.999257e-06	-5.221903e+00	...	1	28780708	...	3.474550e-08
TCGA-CX-7086-01A-11D-2078-08	272	266	6	205	2.205882e-02	coding only	1	28836904	...	61	194	272	2.115345e-06	6.727491e-06	9.432358e-06	-5.025380e+00	...	10	28780708	...	3.474550e-07
TCGA-CX-7219-01A-11D-2012-08	136	134	2	105	1.470588e-02	coding only	1	28836904	...	29	99	136	1.005656e-06	3.433101e-06	4.716179e-06	-5.326410e+00	...	6	28780708	...	2.084730e-07
TCGA-CX-A4AQ-01A-11D-A25D-08	115	115	0	89	0	coding only	1	28836904	...	26	80	115	9.016224e-07	2.774223e-06	3.987945e-06	-5.399251e+00	...	9	28780708	...	3.127095e-07
TCGA-D6-6515-01A-21D-1870-08	70	70	0	50	0	coding only	1	28836904	...	20	48	70	6.935557e-07	1.664534e-06	2.427445e-06	-5.614851e+00	...	2	28780708	...	6.949099e-08
TCGA-D6-6516-01A-11D-1870-08	2295	2244	51	1480	2.222222e-02	coding only	1	28836904	...	763	1470	2294	2.645915e-05	5.097635e-05	7.955084e-05	-4.099355e+00	...	8	28780708	...	2.779640e-07
TCGA-D6-6517-01A-11D-1870-08	81	79	2	62	2.469136e-02	coding only	1	28836904	...	17	57	81	5.895224e-07	1.976634e-06	2.808901e-06	-5.551464e+00	...	5	28780708	...	1.737275e-07
TCGA-D6-6823-01A-11D-1912-08	116	113	3	93	2.586207e-02	coding only	1	28836904	...	20	88	116	6.935557e-07	3.051645e-06	4.022623e-06	-5.395491e+00	...	5	28780708	...	1.737275e-07
TCGA-D6-6824-01A-11D-1912-08	73	73	0	59	0	coding only	1	28836904	...	14	55	72	4.854890e-07	1.907278e-06	2.496801e-06	-5.602616e+00	...	3	28780708	...	1.042365e-07
TCGA-D6-6825-01A-21D-1912-08	84	83	1	58	1.190476e-02	coding only	1	28836904	...	25	54	84	8.669447e-07	1.872600e-06	2.912934e-06	-5.535669e+00	...	4	28780708	...	1.389820e-07
TCGA-D6-6826-01A-11D-1912-08	117	114	3	89	2.564103e-02	coding only	1	28836904	...	25	84	117	8.669447e-07	2.912934e-06	4.057301e-06	-5.391763e+00	...	5	28780708	...	1.737275e-07
TCGA-D6-6827-01A-11D-1912-08	19	19	0	13	0	coding only	1	28836904	...	6	10	19	2.080667e-07	3.467779e-07	6.588779e-07	-6.181195e+00	...	3	28780708	...	1.042365e-07
TCGA-D6-8568-01A-11D-2394-08	123	121	2	101	1.626016e-02	coding only	1	28836904	...	20	91	123	6.935557e-07	3.155679e-06	4.265368e-06	-5.370044e+00	...	10	28780708	...	3.474550e-07
TCGA-D6-8569-01A-11D-2394-08	153	151	2	110	1.307190e-02	coding only	1	28836904	...	41	105	153	1.421789e-06	3.641168e-06	5.305701e-06	-5.275257e+00	...	5	28780708	...	1.737275e-07
TCGA-D6-A4Z9-01A-11D-A25D-08	107	106	1	78	9.345794e-03	coding only	1	28836904	...	28	74	107	9.709780e-07	2.566156e-06	3.710523e-06	-5.430565e+00	...	4	28780708	...	1.389820e-07
TCGA-D6-A4ZB-01A-11D-A25D-08	218	216	2	170	9.174312e-03	coding only	1	28836904	...	46	168	218	1.595178e-06	5.825868e-06	7.559757e-06	-5.121492e+00	...	2	28780708	...	6.949099e-08
TCGA-D6-A6EK-01A-11D-A31L-08	195	192	3	150	1.538462e-02	coding only	1	28836904	...	42	137	195	1.456467e-06	4.750857e-06	6.762168e-06	-5.169914e+00	...	13	28780708	...	4.516915e-07
TCGA-D6-A6EM-01A-21D-A31L-08	116	116	0	93	0	coding only	1	28836904	...	23	87	116	7.975891e-07	3.016967e-06	4.022623e-06	-5.395491e+00	...	6	28780708	...	2.084730e-07
TCGA-D6-A6EN-01A-11D-A31L-08	125	125	0	93	0	coding only	1	28836904	...	32	83	125	1.109689e-06	2.878256e-06	4.334723e-06	-5.363039e+00	...	10	28780708	...	3.474550e-07
TCGA-D6-A6EO-01A-11D-A31L-08	99	99	0	81	0	coding only	1	28836904	...	18	75	98	6.242002e-07	2.600834e-06	3.398423e-06	-5.468723e+00	...	5	28780708	...	1.737275e-07
TCGA-D6-A6EP-01A-11D-A31L-08	141	139	2	108	1.418440e-02	coding only	1	28836904	...	31	104	141	1.075011e-06	3.606490e-06	4.889568e-06	-5.310730e+00	...	4	28780708	...	1.389820e-07
TCGA-D6-A6EQ-01A-11D-A31L-08	108	103	5	79	4.629630e-02	exome+100bp flanks	2	35887302	...	24	75	108	6.687602e-07	2.089876e-06	3.009421e-06	-5.521517e+00	...	4	32163822	...	1.243633e-07
TCGA-D6-A6ES-01A-12D-A31L-08	233	227	6	171	2.575107e-02	coding only	1	28836904	...	56	163	232	1.941956e-06	5.652479e-06	8.045246e-06	-5.094461e+00	...	6	28780708	...	2.084730e-07
TCGA-D6-A74Q-01A-11D-A34J-08	510	502	8	365	1.568627e-02	coding only	1	28836904	...	137	353	509	4.750857e-06	1.224126e-05	1.765099e-05	-4.753231e+00	...	11	28780708	...	3.822005e-07
TCGA-DQ-5624-01A-01D-1870-08	123	120	3	92	2.439024e-02	coding only	1	28836904	...	28	91	123	9.709780e-07	3.155679e-06	4.265368e-06	-5.370044e+00	...	1	28780708	...	3.474550e-08
TCGA-DQ-5625-01A-01D-1870-08	227	221	6	176	2.643172e-02	coding only	1	28836904	...	45	167	226	1.560500e-06	5.791190e-06	7.837180e-06	-5.105840e+00	...	8	28780708	...	2.779640e-07
TCGA-DQ-5629-01A-01D-1870-08	382	375	7	278	1.832461e-02	coding only	1	28836904	...	97	264	382	3.363745e-06	9.154936e-06	1.324691e-05	-4.877885e+00	...	14	28780708	...	4.864370e-07
TCGA-DQ-5630-01A-01D-1870-08	89	87	2	68	2.247191e-02	coding only	1	28836904	...	19	64	89	6.588779e-07	2.219378e-06	3.086323e-06	-5.510559e+00	...	4	28780708	...	1.389820e-07
TCGA-DQ-5631-01A-01D-1870-08	114	109	5	78	4.385965e-02	exome+100bp flanks	2	35887302	...	31	74	114	8.638153e-07	2.062011e-06	3.176611e-06	-5.498036e+00	...	4	32163822	...	1.243633e-07
TCGA-DQ-7588-01A-11D-2078-08	123	123	0	93	0	coding only	1	28836904	...	30	86	123	1.040334e-06	2.982290e-06	4.265368e-06	-5.370044e+00	...	7	28780708	...	2.432185e-07
TCGA-DQ-7591-01A-11D-2078-08	44	43	1	33	2.272727e-02	coding only	1	28836904	...	10	31	44	3.467779e-07	1.075011e-06	1.525823e-06	-5.816496e+00	...	2	28780708	...	6.949099e-08
TCGA-DQ-7592-01A-11D-2078-08	89	88	1	63	1.123596e-02	coding only	1	28836904	...	25	57	89	8.669447e-07	1.976634e-06	3.086323e-06	-5.510559e+00	...	6	28780708	...	2.084730e-07
TCGA-DQ-7593-01A-11D-2229-08	38	38	0	31	0	coding only	1	28836904	...	7	23	38	2.427445e-07	7.975891e-07	1.317756e-06	-5.880165e+00	...	8	28780708	...	2.779640e-07
TCGA-DQ-7596-01A-11D-2229-08	40	40	0	34	0	coding only	1	28836904	...	6	31	40	2.080667e-07	1.075011e-06	1.387111e-06	-5.857889e+00	...	3	28780708	...	1.042365e-07
TCGA-F7-7848-01A-11D-2129-08	368	366	2	273	5.434783e-03	coding only	1	28836904	...	93	258	368	3.225034e-06	8.946869e-06	1.276143e-05	-4.894101e+00	...	15	28780708	...	5.211825e-07
TCGA-F7-8298-01A-11D-2394-08	109	106	3	82	2.752294e-02	coding only	1	28836904	...	24	79	109	8.322669e-07	2.739545e-06	3.779879e-06	-5.422522e+00	...	3	28780708	...	1.042365e-07
TCGA-F7-8489-01A-31D-2394-08	163	161	2	120	1.226994e-02	coding only	1	28836904	...	41	115	163	1.421789e-06	3.987945e-06	5.652479e-06	-5.247761e+00	...	5	28780708	...	1.737275e-07
TCGA-F7-A50G-01A-11D-A25Y-08	116	116	0	85	0	coding only	1	28836904	...	31	83	116	1.075011e-06	2.878256e-06	4.022623e-06	-5.395491e+00	...	2	28780708	...	6.949099e-08
TCGA-F7-A50I-01A-11D-A28R-08	175	175	0	135	0	coding only	1	28836904	...	40	127	175	1.387111e-06	4.404079e-06	6.068613e-06	-5.216911e+00	...	8	28780708	...	2.779640e-07
TCGA-F7-A50J-01A-21D-A28R-08	213	207	6	149	2.816901e-02	coding only	1	28836904	...	58	139	213	2.011312e-06	4.820212e-06	7.386369e-06	-5.131569e+00	...	10	28780708	...	3.474550e-07
TCGA-F7-A61S-01A-11D-A28R-08	140	138	2	102	1.428571e-02	coding only	1	28836904	...	36	93	139	1.248400e-06	3.225034e-06	4.820212e-06	-5.316934e+00	...	8	28780708	...	2.779640e-07
TCGA-F7-A61V-01A-11D-A28R-08	122	121	1	97	8.196721e-03	coding only	1	28836904	...	24	91	122	8.322669e-07	3.155679e-06	4.230690e-06	-5.373589e+00	...	6	28780708	...	2.084730e-07
TCGA-F7-A61W-01A-11D-A28R-08	80	80	0	60	0	coding only	1	28836904	...	20	57	80	6.935557e-07	1.976634e-06	2.774223e-06	-5.556859e+00	...	3	28780708	...	1.042365e-07
TCGA-F7-A620-01A-11D-A28R-08	85	83	2	52	2.352941e-02	coding only	1	28836904	...	31	46	85	1.075011e-06	1.595178e-06	2.947612e-06	-5.530530e+00	...	6	28780708	...	2.084730e-07
TCGA-F7-A622-01A-11D-A28R-08	82	81	1	62	1.219512e-02	coding only	1	28836904	...	19	51	82	6.588779e-07	1.768567e-06	2.843578e-06	-5.546135e+00	...	11	28780708	...	3.822005e-07
TCGA-F7-A623-01A-11D-A28R-08	234	231	3	163	1.282051e-02	coding only	1	28836904	...	68	153	234	2.358089e-06	5.305701e-06	8.114602e-06	-5.090733e+00	...	10	28780708	...	3.474550e-07
TCGA-F7-A624-01A-22D-A30E-08	4197	4141	56	3079	1.334286e-02	coding only	1	28836904	...	1061	2763	4195	3.679313e-05	9.581472e-05	1.454733e-04	-3.837217e+00	...	315	28780708	...	1.094483e-05
TCGA-H7-7774-01A-21D-2078-08	172	171	1	133	5.813953e-03	coding only	1	28836904	...	38	124	172	1.317756e-06	4.300046e-06	5.964579e-06	-5.224420e+00	...	9	28780708	...	3.127095e-07
TCGA-H7-8501-01A-11D-2394-08	176	175	1	135	5.681818e-03	coding only	1	28836904	...	40	134	176	1.387111e-06	4.646823e-06	6.103290e-06	-5.214436e+00	...	1	28780708	...	3.474550e-08
TCGA-H7-8502-01A-11D-2394-08	110	108	2	83	1.818182e-02	coding only	1	28836904	...	25	73	110	8.669447e-07	2.531478e-06	3.814557e-06	-5.418556e+00	...	10	28780708	...	3.474550e-07
TCGA-H7-A6C4-01A-11D-A30E-08	60	58	2	44	3.333333e-02	coding only	1	28836904	...	14	42	60	4.854890e-07	1.456467e-06	2.080667e-06	-5.681797e+00	...	2	28780708	...	6.949099e-08
TCGA-H7-A6C5-01A-11D-A30E-08	143	142	1	101	6.993007e-03	coding only	1	28836904	...	41	92	143	1.421789e-06	3.190356e-06	4.958923e-06	-5.304613e+00	...	9	28780708	...	3.127095e-07
TCGA-H7-A76A-01A-51D-A34J-08	96	95	1	69	1.041667e-02	coding only	1	28836904	...	26	65	96	9.016224e-07	2.254056e-06	3.329068e-06	-5.477677e+00	...	4	28780708	...	1.389820e-07
TCGA-HD-7229-01A-11D-2012-08	189	186	3	145	1.587302e-02	coding only	1	28836904	...	41	137	189	1.421789e-06	4.750857e-06	6.554102e-06	-5.183487e+00	...	8	28780708	...	2.779640e-07
TCGA-HD-7753-01A-11D-2078-08	114	112	2	92	1.754386e-02	coding only	1	28836904	...	20	80	114	6.935557e-07	2.774223e-06	3.953268e-06	-5.403044e+00	...	12	28780708	...	4.169460e-07
TCGA-HD-7754-01A-11D-2078-08	80	77	3	54	3.750000e-02	coding only	1	28836904	...	23	50	80	7.975891e-07	1.733889e-06	2.774223e-06	-5.556859e+00	...	4	28780708	...	1.389820e-07
TCGA-HD-7831-01A-11D-2129-08	47	47	0	33	0	coding only	1	28836904	...	14	27	47	4.854890e-07	9.363002e-07	1.629856e-06	-5.787851e+00	...	6	28780708	...	2.084730e-07
TCGA-HD-7832-01A-11D-2129-08	118	114	4	83	3.389831e-02	coding only	1	28836904	...	31	76	118	1.075011e-06	2.635512e-06	4.091979e-06	-5.388067e+00	...	7	28780708	...	2.432185e-07
TCGA-HD-8224-01A-11D-2394-08	91	89	2	76	2.197802e-02	coding only	1	28836904	...	13	67	91	4.508112e-07	2.323412e-06	3.155679e-06	-5.500907e+00	...	9	28780708	...	3.127095e-07
TCGA-HD-8314-01A-11D-2394-08	84	84	0	63	0	coding only	1	28836904	...	21	62	84	7.282335e-07	2.150023e-06	2.912934e-06	-5.535669e+00	...	1	28780708	...	3.474550e-08
TCGA-HD-8634-01A-11D-2394-08	87	85	2	65	2.298851e-02	coding only	1	28836904	...	20	60	87	6.935557e-07	2.080667e-06	3.016967e-06	-5.520429e+00	...	5	28780708	...	1.737275e-07
TCGA-HD-8635-01A-11D-2394-08	250	246	4	176	1.600000e-02	coding only	1	28836904	...	70	170	250	2.427445e-06	5.895224e-06	8.669447e-06	-5.062009e+00	...	6	28780708	...	2.084730e-07
TCGA-HD-A4C1-01A-11D-A24D-08	242	236	6	167	2.479339e-02	coding only	1	28836904	...	69	161	242	2.392767e-06	5.583124e-06	8.392024e-06	-5.076133e+00	...	6	28780708	...	2.084730e-07
TCGA-HD-A633-01A-11D-A28R-08	161	161	0	122	0	coding only	1	28836904	...	39	110	161	1.352434e-06	3.814557e-06	5.583124e-06	-5.253123e+00	...	12	28780708	...	4.169460e-07
TCGA-HD-A634-01A-11D-A28R-08	59	59	0	39	0	coding only	1	28836904	...	20	33	59	6.935557e-07	1.144367e-06	2.045989e-06	-5.689097e+00	...	6	28780708	...	2.084730e-07
TCGA-HD-A6HZ-01A-12D-A31L-08	113	110	3	76	2.654867e-02	coding only	1	28836904	...	34	71	113	1.179045e-06	2.462123e-06	3.918590e-06	-5.406870e+00	...	5	28780708	...	1.737275e-07
TCGA-HD-A6I0-01A-11D-A31L-08	95	92	3	72	3.157895e-02	coding only	1	28836904	...	20	67	95	6.935557e-07	2.323412e-06	3.294390e-06	-5.482225e+00	...	5	28780708	...	1.737275e-07
TCGA-IQ-7630-01A-11D-2078-08	155	150	5	113	3.225806e-02	exome+100bp flanks	2	35887302	...	37	110	155	1.031005e-06	3.065151e-06	4.319076e-06	-5.364609e+00	...	3	32163822	...	9.327250e-08
TCGA-IQ-7631-01A-11D-2078-08	40	38	2	23	5.000000e-02	coding only	1	28836904	...	15	20	40	5.201668e-07	6.935557e-07	1.387111e-06	-5.857889e+00	...	3	28780708	...	1.042365e-07
TCGA-IQ-7632-01A-11D-2078-08	63	63	0	45	0	coding only	1	28836904	...	18	42	63	6.242002e-07	1.456467e-06	2.184701e-06	-5.660608e+00	...	3	28780708	...	1.042365e-07
TCGA-IQ-A61E-01A-22D-A30E-08	237	235	2	170	8.438819e-03	coding only	1	28836904	...	65	165	237	2.254056e-06	5.721835e-06	8.218635e-06	-5.085200e+00	...	4	28780708	...	1.389820e-07
TCGA-IQ-A61G-01A-11D-A30E-08	173	172	1	127	5.780347e-03	coding only	1	28836904	...	45	120	173	1.560500e-06	4.161334e-06	5.999257e-06	-5.221903e+00	...	7	28780708	...	2.432185e-07
TCGA-IQ-A61H-01A-11D-A30E-08	182	179	3	134	1.648352e-02	coding only	1	28836904	...	45	126	182	1.560500e-06	4.369401e-06	6.311357e-06	-5.199877e+00	...	8	28780708	...	2.779640e-07
TCGA-IQ-A61I-01A-11D-A30E-08	173	170	3	122	1.734104e-02	coding only	1	28836904	...	48	119	173	1.664534e-06	4.126657e-06	5.999257e-06	-5.221903e+00	...	3	28780708	...	1.042365e-07
TCGA-IQ-A61J-01A-11D-A30E-08	65	65	0	48	0	coding only	1	28836904	...	17	43	64	5.895224e-07	1.491145e-06	2.219378e-06	-5.653769e+00	...	4	28780708	...	1.389820e-07
TCGA-IQ-A61K-01A-11D-A30E-08	92	90	2	68	2.173913e-02	coding only	1	28836904	...	22	63	92	7.629113e-07	2.184701e-06	3.190356e-06	-5.496161e+00	...	5	28780708	...	1.737275e-07
TCGA-IQ-A61L-01A-11D-A30E-08	118	117	1	89	8.474576e-03	coding only	1	28836904	...	28	84	118	9.709780e-07	2.912934e-06	4.091979e-06	-5.388067e+00	...	5	28780708	...	1.737275e-07
TCGA-IQ-A61O-01A-11D-A30E-08	62	61	1	42	1.612903e-02	coding only	1	28836904	...	19	38	62	6.588779e-07	1.317756e-06	2.150023e-06	-5.667557e+00	...	4	28780708	...	1.389820e-07
TCGA-IQ-A6SG-01A-12D-A34J-08	124	123	1	92	8.064516e-03	coding only	1	28836904	...	30	87	123	1.040334e-06	3.016967e-06	4.265368e-06	-5.370044e+00	...	5	28780708	...	1.737275e-07
TCGA-IQ-A6SH-01A-12D-A34J-08	100	97	3	69	3.000000e-02	coding only	1	28836904	...	28	62	100	9.709780e-07	2.150023e-06	3.467779e-06	-5.459949e+00	...	7	28780708	...	2.432185e-07
TCGA-KU-A66S-01A-21D-A30E-08	645	635	10	505	1.550388e-02	coding only	1	28836904	...	130	485	645	4.508112e-06	1.681873e-05	2.236717e-05	-4.650389e+00	...	20	28780708	...	6.949099e-07
TCGA-KU-A66T-01A-11D-A30E-08	139	136	3	101	2.158273e-02	coding only	1	28836904	...	35	99	139	1.213723e-06	3.433101e-06	4.820212e-06	-5.316934e+00	...	2	28780708	...	6.949099e-08
TCGA-KU-A6H7-01A-11D-A31L-08	203	199	4	147	1.970443e-02	coding only	1	28836904	...	52	143	203	1.803245e-06	4.958923e-06	7.039591e-06	-5.152453e+00	...	4	28780708	...	1.389820e-07
TCGA-KU-A6H8-01A-21D-A34J-08	39	38	1	31	2.564103e-02	coding only	1	28836904	...	7	29	39	2.427445e-07	1.005656e-06	1.352434e-06	-5.868884e+00	...	2	28780708	...	6.949099e-08
TCGA-MT-A51W-01A-21D-A25Y-08	78	78	0	61	0	coding only	1	28836904	...	17	57	78	5.895224e-07	1.976634e-06	2.704867e-06	-5.567854e+00	...	4	28780708	...	1.389820e-07
TCGA-MT-A51X-01A-11D-A25Y-08	68	67	1	46	1.470588e-02	coding only	1	28836904	...	21	46	68	7.282335e-07	1.595178e-06	2.358089e-06	-5.627440e+00	...	0	28780708	...	0
TCGA-MT-A67A-01A-11D-A30E-08	144	139	5	106	3.472222e-02	exome+100bp flanks	2	35887302	...	33	98	144	9.195453e-07	2.730771e-06	4.012561e-06	-5.396578e+00	...	8	32163822	...	2.487267e-07
TCGA-MT-A67D-01A-31D-A30E-08	138	134	4	99	2.898551e-02	coding only	1	28836904	...	35	93	138	1.213723e-06	3.225034e-06	4.785535e-06	-5.320070e+00	...	5	28780708	...	1.737275e-07
TCGA-MT-A67F-01A-11D-A30E-08	373	366	7	289	1.876676e-02	coding only	1	28836904	...	77	289	373	2.670190e-06	1.002188e-05	1.293481e-05	-4.888240e+00	...	0	28780708	...	0
TCGA-MT-A67G-01A-11D-A30E-08	85	84	1	61	1.176471e-02	coding only	1	28836904	...	23	58	85	7.975891e-07	2.011312e-06	2.947612e-06	-5.530530e+00	...	3	28780708	...	1.042365e-07
TCGA-MT-A7BN-01A-12D-A34J-08	76	75	1	57	1.315789e-02	coding only	1	28836904	...	18	53	76	6.242002e-07	1.837923e-06	2.635512e-06	-5.579135e+00	...	4	28780708	...	1.389820e-07
TCGA-MZ-A5BI-01A-31D-A34J-08	49	49	0	40	0	coding only	1	28836904	...	9	36	49	3.121001e-07	1.248400e-06	1.699212e-06	-5.769753e+00	...	4	28780708	...	1.389820e-07
TCGA-MZ-A6I9-01A-11D-A31L-08	61	60	1	40	1.639344e-02	coding only	1	28836904	...	20	37	61	6.935557e-07	1.283078e-06	2.115345e-06	-5.674619e+00	...	3	28780708	...	1.042365e-07
TCGA-MZ-A7D7-01A-21D-A34J-08	214	211	3	144	1.401869e-02	coding only	1	28836904	...	67	136	214	2.323412e-06	4.716179e-06	7.421046e-06	-5.129535e+00	...	8	28780708	...	2.779640e-07
TCGA-P3-A5Q5-01A-11D-A28R-08	337	334	3	249	8.902077e-03	coding only	1	28836904	...	85	245	337	2.947612e-06	8.496058e-06	1.168641e-05	-4.932319e+00	...	4	28780708	...	1.389820e-07
TCGA-P3-A5Q6-01A-11D-A28R-08	154	153	1	110	6.493506e-03	coding only	1	28836904	...	43	104	154	1.491145e-06	3.606490e-06	5.340379e-06	-5.272428e+00	...	6	28780708	...	2.084730e-07
TCGA-P3-A5QA-01A-11D-A28R-08	92	92	0	73	0	coding only	1	28836904	...	19	68	92	6.588779e-07	2.358089e-06	3.190356e-06	-5.496161e+00	...	5	28780708	...	1.737275e-07
TCGA-P3-A5QE-01A-11D-A28R-08	52	52	0	39	0	coding only	1	28836904	...	13	36	52	4.508112e-07	1.248400e-06	1.803245e-06	-5.743945e+00	...	3	28780708	...	1.042365e-07
TCGA-P3-A5QF-01A-11D-A28R-08	460	446	14	325	3.043478e-02	exome+100bp flanks	2	35887302	...	120	319	459	3.343801e-06	8.888938e-06	1.279004e-05	-4.893128e+00	...	6	32163822	...	1.865450e-07
TCGA-P3-A6SW-01A-11D-A34J-08	121	119	2	89	1.652893e-02	coding only	1	28836904	...	30	86	121	1.040334e-06	2.982290e-06	4.196012e-06	-5.377163e+00	...	3	28780708	...	1.042365e-07
TCGA-P3-A6SX-01A-11D-A34J-08	204	198	6	156	2.941176e-02	coding only	1	28836904	...	42	151	204	1.456467e-06	5.236346e-06	7.074268e-06	-5.150318e+00	...	5	28780708	...	1.737275e-07
TCGA-P3-A6T0-01A-12D-A34J-08	113	112	1	83	8.849558e-03	coding only	1	28836904	...	29	77	113	1.005656e-06	2.670190e-06	3.918590e-06	-5.406870e+00	...	6	28780708	...	2.084730e-07
TCGA-P3-A6T2-01A-11D-A34J-08	76	75	1	48	1.315789e-02	coding only	1	28836904	...	27	44	76	9.363002e-07	1.525823e-06	2.635512e-06	-5.579135e+00	...	4	28780708	...	1.389820e-07
TCGA-P3-A6T3-01A-11D-A34J-08	138	138	0	107	0	coding only	1	28836904	...	31	106	137	1.075011e-06	3.675845e-06	4.750857e-06	-5.323228e+00	...	0	28780708	...	0
TCGA-P3-A6T4-01A-11D-A34J-08	188	186	2	140	1.063830e-02	coding only	1	28836904	...	46	134	188	1.595178e-06	4.646823e-06	6.519424e-06	-5.185791e+00	...	6	28780708	...	2.084730e-07
TCGA-P3-A6T5-01A-11D-A34J-08	294	290	4	202	1.360544e-02	coding only	1	28836904	...	88	194	294	3.051645e-06	6.727491e-06	1.019527e-05	-4.991601e+00	...	8	28780708	...	2.779640e-07
TCGA-P3-A6T6-01A-11D-A34J-08	155	151	4	120	2.580645e-02	coding only	1	28836904	...	31	115	155	1.075011e-06	3.987945e-06	5.375057e-06	-5.269617e+00	...	5	28780708	...	1.737275e-07
TCGA-P3-A6T7-01A-11D-A34J-08	165	163	2	122	1.212121e-02	coding only	1	28836904	...	41	109	165	1.421789e-06	3.779879e-06	5.721835e-06	-5.242465e+00	...	13	28780708	...	4.516915e-07
TCGA-P3-A6T8-01A-11D-A34J-08	105	102	3	82	2.857143e-02	coding only	1	28836904	...	20	71	104	6.935557e-07	2.462123e-06	3.606490e-06	-5.442915e+00	...	10	28780708	...	3.474550e-07
TCGA-QK-A64Z-01A-11D-A30E-08	117	115	2	74	1.709402e-02	coding only	1	28836904	...	41	71	117	1.421789e-06	2.462123e-06	4.057301e-06	-5.391763e+00	...	3	28780708	...	1.042365e-07
TCGA-QK-A652-01A-11D-A30E-08	60	60	0	48	0	coding only	1	28836904	...	12	47	60	4.161334e-07	1.629856e-06	2.080667e-06	-5.681797e+00	...	1	28780708	...	3.474550e-08
TCGA-QK-A6IF-01A-11D-A31L-08	35	34	1	25	2.857143e-02	coding only	1	28836904	...	9	23	35	3.121001e-07	7.975891e-07	1.213723e-06	-5.915881e+00	...	2	28780708	...	6.949099e-08
TCGA-QK-A6IG-01A-11D-A31L-08	140	138	2	111	1.428571e-02	coding only	1	28836904	...	27	108	140	9.363002e-07	3.745201e-06	4.854890e-06	-5.313821e+00	...	3	28780708	...	1.042365e-07
TCGA-QK-A6IH-01A-11D-A31L-08	83	83	0	65	0	coding only	1	28836904	...	18	63	83	6.242002e-07	2.184701e-06	2.878256e-06	-5.540871e+00	...	2	28780708	...	6.949099e-08
TCGA-QK-A6II-01A-11D-A31L-08	200	197	3	145	1.500000e-02	coding only	1	28836904	...	52	137	200	1.803245e-06	4.750857e-06	6.935557e-06	-5.158919e+00	...	8	28780708	...	2.779640e-07
TCGA-QK-A6IJ-01A-11D-A31L-08	101	98	3	71	2.970297e-02	coding only	1	28836904	...	27	66	101	9.363002e-07	2.288734e-06	3.502456e-06	-5.455627e+00	...	5	28780708	...	1.737275e-07
TCGA-QK-A6V9-01A-11D-A34J-08	106	103	3	74	2.830189e-02	coding only	1	28836904	...	29	68	106	1.005656e-06	2.358089e-06	3.675845e-06	-5.434643e+00	...	6	28780708	...	2.084730e-07
TCGA-QK-A6VB-01A-12D-A34J-08	579	572	7	452	1.208981e-02	coding only	1	28836904	...	120	341	579	4.161334e-06	1.182513e-05	2.007844e-05	-4.697270e+00	...	111	28780708	...	3.856750e-06
TCGA-QK-A6VC-01A-23D-A34J-08	250	246	4	188	1.600000e-02	coding only	1	28836904	...	58	186	250	2.011312e-06	6.450068e-06	8.669447e-06	-5.062009e+00	...	2	28780708	...	6.949099e-08
TCGA-QK-A8Z7-01A-11D-A391-08	176	173	3	137	1.704545e-02	coding only	1	28836904	...	36	130	176	1.248400e-06	4.508112e-06	6.103290e-06	-5.214436e+00	...	7	28780708	...	2.432185e-07
TCGA-QK-A8Z8-01A-11D-A391-08	449	445	4	329	8.908686e-03	coding only	1	28836904	...	116	303	448	4.022623e-06	1.050737e-05	1.553565e-05	-4.808671e+00	...	25	28780708	...	8.686374e-07
TCGA-QK-A8Z9-01B-11D-A391-08	144	142	2	101	1.388889e-02	coding only	1	28836904	...	41	98	144	1.421789e-06	3.398423e-06	4.993601e-06	-5.301586e+00	...	3	28780708	...	1.042365e-07
TCGA-QK-A8ZA-01A-11D-A391-08	152	150	2	114	1.315789e-02	coding only	1	28836904	...	36	108	152	1.248400e-06	3.745201e-06	5.271024e-06	-5.278105e+00	...	6	28780708	...	2.084730e-07
TCGA-QK-A8ZB-01A-11D-A391-08	133	129	4	98	3.007519e-02	coding only	1	28836904	...	31	94	133	1.075011e-06	3.259712e-06	4.612146e-06	-5.336097e+00	...	4	28780708	...	1.389820e-07
TCGA-QK-AA3J-01A-11D-A391-08	150	148	2	105	1.333333e-02	coding only	1	28836904	...	43	99	149	1.491145e-06	3.433101e-06	5.166990e-06	-5.286762e+00	...	5	28780708	...	1.737275e-07
TCGA-QK-AA3K-01A-11D-A391-08	119	118	1	91	8.403361e-03	coding only	1	28836904	...	27	81	119	9.363002e-07	2.808901e-06	4.126657e-06	-5.384402e+00	...	10	28780708	...	3.474550e-07
TCGA-RS-A6TO-01A-32D-A34J-08	219	214	5	154	2.283105e-02	coding only	1	28836904	...	60	146	219	2.080667e-06	5.062957e-06	7.594435e-06	-5.119505e+00	...	8	28780708	...	2.779640e-07
TCGA-RS-A6TP-01A-12D-A34J-08	161	157	4	113	2.484472e-02	coding only	1	28836904	...	44	110	161	1.525823e-06	3.814557e-06	5.583124e-06	-5.253123e+00	...	3	28780708	...	1.042365e-07
TCGA-T2-A6WX-01A-12D-A34J-08	238	233	5	175	2.100840e-02	coding only	1	28836904	...	58	172	238	2.011312e-06	5.964579e-06	8.253313e-06	-5.083372e+00	...	3	28780708	...	1.042365e-07
TCGA-T2-A6WZ-01A-21D-A34J-08	127	127	0	92	0	coding only	1	28836904	...	35	88	127	1.213723e-06	3.051645e-06	4.404079e-06	-5.356145e+00	...	4	28780708	...	1.389820e-07
TCGA-T2-A6X0-01A-11D-A34J-08	78	76	2	53	2.564103e-02	coding only	1	28836904	...	23	50	78	7.975891e-07	1.733889e-06	2.704867e-06	-5.567854e+00	...	2	28780708	...	6.949099e-08
TCGA-T2-A6X2-01A-12D-A34J-08	428	424	4	320	9.345794e-03	coding only	1	28836904	...	104	312	427	3.606490e-06	1.081947e-05	1.480741e-05	-4.829521e+00	...	7	28780708	...	2.432185e-07
TCGA-T3-A92M-01A-31D-A391-08	414	402	12	312	2.898551e-02	coding only	1	28836904	...	90	303	413	3.121001e-06	1.050737e-05	1.432193e-05	-4.843999e+00	...	8	28780708	...	2.779640e-07
TCGA-T3-A92N-01A-11D-A391-08	197	191	6	140	3.045685e-02	exome+100bp flanks	2	35887302	...	51	131	195	1.421115e-06	3.650316e-06	5.433677e-06	-5.264906e+00	...	7	32163822	...	2.176358e-07
TCGA-TN-A7HI-01A-11D-A34J-08	72	72	0	59	0	coding only	1	28836904	...	13	54	72	4.508112e-07	1.872600e-06	2.496801e-06	-5.602616e+00	...	5	28780708	...	1.737275e-07
TCGA-TN-A7HJ-01A-12D-A34J-08	141	138	3	108	2.127660e-02	coding only	1	28836904	...	30	100	141	1.040334e-06	3.467779e-06	4.889568e-06	-5.310730e+00	...	7	28780708	...	2.432185e-07
TCGA-TN-A7HL-01A-11D-A34J-08	739	723	16	524	2.165088e-02	coding only	1	28836904	...	199	519	739	6.900880e-06	1.799777e-05	2.562688e-05	-4.591304e+00	...	5	28780708	...	1.737275e-07
TCGA-UF-A718-01A-22D-A34J-08	78	76	2	60	2.564103e-02	coding only	1	28836904	...	16	56	78	5.548446e-07	1.941956e-06	2.704867e-06	-5.567854e+00	...	4	28780708	...	1.389820e-07
TCGA-UF-A719-01A-12D-A34J-08	150	148	2	117	1.333333e-02	coding only	1	28836904	...	31	109	150	1.075011e-06	3.779879e-06	5.201668e-06	-5.283857e+00	...	8	28780708	...	2.779640e-07
TCGA-UF-A71A-01A-22D-A34J-08	237	232	5	168	2.109705e-02	coding only	1	28836904	...	64	161	237	2.219378e-06	5.583124e-06	8.218635e-06	-5.085200e+00	...	7	28780708	...	2.432185e-07
TCGA-UF-A71B-01A-12D-A34J-08	186	185	1	130	5.376344e-03	coding only	1	28836904	...	55	123	184	1.907278e-06	4.265368e-06	6.380713e-06	-5.195131e+00	...	5	28780708	...	1.737275e-07
TCGA-UF-A71D-01A-12D-A34J-08	538	531	7	392	1.301115e-02	coding only	1	28836904	...	139	364	537	4.820212e-06	1.262271e-05	1.862197e-05	-4.729974e+00	...	27	28780708	...	9.381284e-07
TCGA-UF-A71E-01A-31D-A34J-08	196	192	4	136	2.040816e-02	coding only	1	28836904	...	56	131	196	1.941956e-06	4.542790e-06	6.796846e-06	-5.167693e+00	...	5	28780708	...	1.737275e-07
TCGA-UF-A7J9-01A-12D-A34J-08	301	297	4	224	1.328904e-02	coding only	1	28836904	...	73	211	301	2.531478e-06	7.317013e-06	1.043801e-05	-4.981382e+00	...	13	28780708	...	4.516915e-07
TCGA-UF-A7JA-01A-12D-A34J-08	286	284	2	222	6.993007e-03	coding only	1	28836904	...	62	218	286	2.150023e-06	7.559757e-06	9.917847e-06	-5.003583e+00	...	4	28780708	...	1.389820e-07
TCGA-UF-A7JC-01A-21D-A34J-08	74	70	4	56	5.405405e-02	coding only	1	28836904	...	14	51	74	4.854890e-07	1.768567e-06	2.566156e-06	-5.590717e+00	...	5	28780708	...	1.737275e-07
TCGA-UF-A7JD-01A-11D-A34J-08	137	134	3	101	2.189781e-02	coding only	1	28836904	...	33	97	137	1.144367e-06	3.363745e-06	4.750857e-06	-5.323228e+00	...	4	28780708	...	1.389820e-07
TCGA-UF-A7JF-01A-11D-A34J-08	129	126	3	94	2.325581e-02	coding only	1	28836904	...	32	87	129	1.109689e-06	3.016967e-06	4.473434e-06	-5.349359e+00	...	7	28780708	...	2.432185e-07
TCGA-UF-A7JH-01A-21D-A34J-08	95	93	2	68	2.105263e-02	coding only	1	28836904	...	25	61	95	8.669447e-07	2.115345e-06	3.294390e-06	-5.482225e+00	...	6	28780708	...	2.084730e-07
TCGA-UF-A7JJ-01A-11D-A34J-08	118	116	2	94	1.694915e-02	coding only	1	28836904	...	22	87	118	7.629113e-07	3.016967e-06	4.091979e-06	-5.388067e+00	...	7	28780708	...	2.432185e-07
TCGA-UF-A7JK-01A-11D-A34J-08	144	139	5	94	3.472222e-02	exome+100bp flanks	2	35887302	...	45	91	144	1.253925e-06	2.535716e-06	4.012561e-06	-5.396578e+00	...	3	32163822	...	9.327250e-08
TCGA-UF-A7JO-01A-11D-A34J-08	218	214	4	156	1.834862e-02	coding only	1	28836904	...	58	146	218	2.011312e-06	5.062957e-06	7.559757e-06	-5.121492e+00	...	10	28780708	...	3.474550e-07
TCGA-UF-A7JS-01A-11D-A34J-08	83	82	1	59	1.204819e-02	coding only	1	28836904	...	23	55	83	7.975891e-07	1.907278e-06	2.878256e-06	-5.540871e+00	...	4	28780708	...	1.389820e-07
TCGA-UF-A7JT-01A-11D-A34J-08	234	232	2	170	8.547009e-03	coding only	1	28836904	...	62	166	234	2.150023e-06	5.756513e-06	8.114602e-06	-5.090733e+00	...	4	28780708	...	1.389820e-07
TCGA-UF-A7JV-01A-11D-A34J-08	107	103	4	75	3.738318e-02	coding only	1	28836904	...	28	71	107	9.709780e-07	2.462123e-06	3.710523e-06	-5.430565e+00	...	4	28780708	...	1.389820e-07
TCGA-UP-A6WW-01A-12D-A34J-08	48	46	2	35	4.166667e-02	coding only	1	28836904	...	11	32	48	3.814557e-07	1.109689e-06	1.664534e-06	-5.778707e+00	...	3	28780708	...	1.042365e-07
TCGA-WA-A7GZ-01A-11D-A34J-08	256	249	7	187	2.734375e-02	coding only	1	28836904	...	62	174	256	2.150023e-06	6.033935e-06	8.877513e-06	-5.051709e+00	...	13	28780708	...	4.516915e-07
TCGA-WA-A7H4-01A-21D-A34J-08	100	99	1	80	1.000000e-02	coding only	1	28836904	...	19	74	100	6.588779e-07	2.566156e-06	3.467779e-06	-5.459949e+00	...	6	28780708	...	2.084730e-07
