		Clinical Features	Time to Death		YEARS_TO_BIRTH		PATHOLOGIC_STAGE		PATHOLOGY_T_STAGE		PATHOLOGY_N_STAGE		PATHOLOGY_M_STAGE		GENDER		KARNOFSKY_PERFORMANCE_SCORE		NUMBER_PACK_YEARS_SMOKED		YEAR_OF_TOBACCO_SMOKING_ONSET		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	22 (4%)	506	0.00037823	0.0117	0.075335	0.406	0.12853	0.541	0.20603	0.684	0.19079	0.668	0.35213	0.86	1	1	0.16792	0.627	NA	NA	NA	NA	0.40292	0.885	0.61214	1
1q gain	51 (10%)	477	0.048902	0.315	0.029676	0.23	0.055239	0.344	0.079979	0.42	0.40605	0.885	0.68153	1	0.54127	1	0.40106	0.885	NA	NA	NA	NA	0.63672	1	0.72705	1
2p gain	78 (15%)	450	0.65605	1	0.17696	0.648	0.26088	0.745	0.34877	0.854	0.74559	1	0.39263	0.885	1	1	0.7098	1	0.54307	1	NA	NA	0.35857	0.87	0.76363	1
2q gain	79 (15%)	449	0.53862	1	0.21717	0.697	0.44788	0.935	0.54744	1	1	1	0.39249	0.885	0.52523	1	0.89912	1	0.54307	1	NA	NA	0.33788	0.838	0.37411	0.884
3p gain	20 (4%)	508	0.041769	0.288	0.48197	0.96	0.085169	0.436	0.12899	0.541	0.038914	0.274	0.10741	0.498	0.47614	0.952	0.46856	0.945	NA	NA	NA	NA	0.79011	1	1	1
3q gain	60 (11%)	468	0.1347	0.548	0.78833	1	0.00046	0.0138	0.00016	0.00768	0.0046908	0.0634	0.0060954	0.076	0.56769	1	0.9176	1	NA	NA	NA	NA	0.4671	0.944	1	1
4p gain	13 (2%)	515	0.1398	0.56	0.77421	1	0.38458	0.884	0.1693	0.63	0.47369	0.951	1	1	0.39571	0.885	NA	NA	NA	NA	NA	NA	1	1	1	1
4q gain	13 (2%)	515	0.37202	0.884	0.77421	1	0.45901	0.937	0.6775	1	0.4341	0.918	0.70242	1	0.77889	1	NA	NA	NA	NA	NA	NA	1	1	1	1
5p gain	191 (36%)	337	0.075192	0.406	0.00024142	0.00998	0.098899	0.47	0.21477	0.697	0.79766	1	0.89868	1	0.023253	0.196	0.59568	1	NA	NA	NA	NA	0.04027	0.28	0.8317	1
5q gain	210 (40%)	318	0.061584	0.368	0.00063975	0.0175	0.42014	0.899	0.39816	0.885	0.62088	1	1	1	0.01594	0.152	0.52297	1	0.58829	1	0.40373	0.885	0.04857	0.315	0.83641	1
6p gain	11 (2%)	517	0.93099	1	0.79315	1	0.3131	0.808	0.23135	0.709	1	1	0.68643	1	0.34245	0.845	NA	NA	NA	NA	NA	NA	1	1	1	1
6q gain	9 (2%)	519	0.72795	1	0.35877	0.87	0.2036	0.681	0.28141	0.774	1	1	1	1	0.16751	0.627	NA	NA	NA	NA	NA	NA	1	1	1	1
7p gain	173 (33%)	355	0.99306	1	0.24743	0.729	0.03913	0.274	0.064059	0.368	0.43235	0.918	0.025878	0.212	0.00379	0.0543	0.54134	1	0.097856	0.468	0.063525	0.368	0.085129	0.436	0.51168	0.993
7q gain	173 (33%)	355	0.51729	0.997	0.26871	0.76	0.0087399	0.102	0.03734	0.268	0.30073	0.803	0.002551	0.0422	0.0089018	0.102	0.3095	0.807	0.15437	0.6	0.063525	0.368	0.04449	0.303	0.27035	0.76
8p gain	31 (6%)	497	0.54985	1	0.17625	0.648	0.00087999	0.0203	0.00078999	0.019	1	1	0.19399	0.674	0.56281	1	0.22478	0.699	NA	NA	NA	NA	0.52799	1	0.38167	0.884
8q gain	61 (12%)	467	0.14571	0.573	0.011701	0.125	0.0079999	0.096	0.00361	0.0534	0.41565	0.893	0.17659	0.648	0.20162	0.677	0.52308	1	0.79995	1	NA	NA	0.85914	1	0.4942	0.974
9p gain	14 (3%)	514	0.11771	0.511	0.49272	0.973	0.89006	1	0.058749	0.355	1	1	0.14116	0.56	0.0084168	0.0998	NA	NA	NA	NA	NA	NA	0.72401	1	0.58238	1
9q gain	13 (2%)	515	0.46058	0.937	0.22478	0.699	0.27547	0.771	0.00313	0.0493	1	1	1	1	0.075104	0.406	NA	NA	NA	NA	NA	NA	1	1	0.58238	1
10p gain	16 (3%)	512	0.94857	1	0.18349	0.662	0.36572	0.881	0.18628	0.667	0.074233	0.406	0.72639	1	0.79638	1	0.87359	1	NA	NA	NA	NA	0.40564	0.885	1	1
10q gain	12 (2%)	516	0.83982	1	0.015156	0.147	0.8476	1	0.87964	1	0.24594	0.726	1	1	0.36371	0.88	0.59922	1	NA	NA	NA	NA	0.48583	0.964	1	1
11p gain	31 (6%)	497	0.53096	1	0.98642	1	0.02855	0.225	0.01281	0.131	1	1	0.11563	0.509	0.84717	1	0.3052	0.803	NA	NA	NA	NA	0.73244	1	1	1
11q gain	29 (5%)	499	0.19888	0.676	0.94647	1	0.16163	0.615	0.083989	0.436	1	1	0.42041	0.899	1	1	NA	NA	NA	NA	NA	NA	0.85102	1	1	1
12p gain	121 (23%)	407	0.0070312	0.0865	0.18548	0.667	0.00021	0.00916	0.00142	0.0273	0.047938	0.315	0.019331	0.17	0.38829	0.885	0.014828	0.145	0.31076	0.807	NA	NA	0.10953	0.503	0.22463	0.699
12q gain	122 (23%)	406	0.010578	0.115	0.33433	0.834	2e-04	0.00914	0.00072999	0.0185	0.047938	0.315	0.019907	0.174	0.33408	0.834	0.014828	0.145	0.31076	0.807	NA	NA	0.11062	0.503	0.22496	0.699
13q gain	22 (4%)	506	0.13379	0.548	0.25386	0.736	0.13057	0.543	0.20479	0.683	1	1	0.367	0.881	0.25703	0.741	NA	NA	NA	NA	NA	NA	0.095739	0.464	0.089971	0.451
14q gain	16 (3%)	512	0.12357	0.525	0.47276	0.951	0.22675	0.7	0.0056599	0.0734	1	1	0.29538	0.798	0.79638	1	NA	NA	NA	NA	NA	NA	1	1	1	1
15q gain	26 (5%)	502	0.50253	0.985	0.45056	0.937	0.45577	0.937	0.36835	0.882	0.19079	0.668	0.58245	1	0.67795	1	0.049928	0.32	NA	NA	NA	NA	0.56074	1	1	1
16p gain	107 (20%)	421	0.37898	0.884	0.24507	0.726	0.19526	0.674	0.070549	0.398	0.21028	0.691	0.6482	1	0.65226	1	0.74218	1	0.064066	0.368	NA	NA	0.2379	0.718	1	1
16q gain	99 (19%)	429	0.25213	0.734	0.33756	0.838	0.28601	0.781	0.04849	0.315	0.20761	0.687	1	1	1	1	0.64924	1	0.064066	0.368	NA	NA	0.4226	0.902	0.78651	1
17p gain	26 (5%)	502	0.8342	1	0.55653	1	0.30298	0.803	0.8251	1	0.19079	0.668	0.021348	0.185	1	1	0.64578	1	NA	NA	NA	NA	0.02693	0.217	0.61214	1
17q gain	33 (6%)	495	0.49151	0.973	0.3408	0.843	0.68726	1	0.66062	1	0.29603	0.798	0.20173	0.677	0.70872	1	0.52308	1	0.38892	0.885	NA	NA	0.062359	0.368	0.38296	0.884
18p gain	25 (5%)	503	0.062397	0.368	0.80437	1	0.92693	1	0.87008	1	0.60745	1	0.40054	0.885	0.090714	0.451	NA	NA	NA	NA	NA	NA	0.66516	1	0.33159	0.832
18q gain	25 (5%)	503	0.13836	0.56	0.617	1	0.82027	1	0.76836	1	0.57739	1	0.40054	0.885	0.090714	0.451	NA	NA	NA	NA	NA	NA	0.66814	1	0.33159	0.832
19p gain	51 (10%)	477	0.76144	1	0.67585	1	0.00338	0.0523	0.01323	0.134	0.23227	0.709	0.0078085	0.0949	0.22043	0.699	0.45604	0.937	NA	NA	NA	NA	0.071039	0.399	0.72705	1
19q gain	57 (11%)	471	0.82633	1	0.39151	0.885	0.00074999	0.0185	0.00468	0.0634	0.41565	0.893	0.0035373	0.0534	0.24205	0.722	0.45604	0.937	NA	NA	NA	NA	0.0319	0.241	1	1
20p gain	112 (21%)	416	0.16198	0.615	0.23315	0.709	2e-05	0.0016	9.9999e-06	0.0016	0.37526	0.884	0.016733	0.154	0.00035011	0.0112	0.99136	1	0.49811	0.978	NA	NA	0.32946	0.832	0.44155	0.928
20q gain	115 (22%)	413	0.1202	0.513	0.078741	0.42	5.9999e-05	0.00384	2e-05	0.0016	0.22464	0.699	0.018794	0.169	0.0019901	0.036	0.99136	1	0.49811	0.978	NA	NA	0.31559	0.812	0.31927	0.819
21q gain	50 (9%)	478	0.71288	1	0.11614	0.509	0.22095	0.699	0.11064	0.503	1	1	0.53333	1	0.43919	0.925	0.12602	0.533	0.47799	0.954	NA	NA	0.22025	0.699	0.71881	1
22q gain	40 (8%)	488	0.38254	0.884	0.56285	1	0.70011	1	0.087349	0.444	1	1	0.82026	1	0.30498	0.803	0.40727	0.885	NA	NA	NA	NA	0.21331	0.694	1	1
xp gain	32 (6%)	496	0.57783	1	0.55751	1	0.02526	0.209	0.092789	0.454	1	1	0.036873	0.266	0.85052	1	0.58708	1	NA	NA	NA	NA	0.10782	0.498	0.38296	0.884
xq gain	31 (6%)	497	0.92776	1	0.78062	1	0.053819	0.34	0.11678	0.51	1	1	0.027381	0.219	0.7045	1	0.33089	0.832	NA	NA	NA	NA	0.5319	1	0.38296	0.884
1p loss	60 (11%)	468	0.529	1	0.30313	0.803	0.30478	0.803	0.01635	0.152	1	1	0.56429	1	0.25236	0.734	0.76437	1	NA	NA	NA	NA	0.61493	1	0.11171	0.506
1q loss	37 (7%)	491	0.65075	1	0.53678	1	0.83412	1	0.073179	0.404	1	1	0.2428	0.722	0.72477	1	0.79087	1	NA	NA	NA	NA	0.58437	1	0.46261	0.939
2p loss	14 (3%)	514	0.82815	1	0.83855	1	0.44456	0.93	0.13876	0.56	1	1	0.70745	1	0.77894	1	NA	NA	NA	NA	NA	NA	0.055229	0.344	1	1
2q loss	14 (3%)	514	0.81657	1	0.81429	1	0.53892	1	0.22265	0.699	1	1	0.70745	1	0.77894	1	NA	NA	NA	NA	NA	NA	0.17467	0.647	1	1
3p loss	379 (72%)	149	0.55903	1	0.79249	1	0.04333	0.297	0.0288	0.225	0.59293	1	0.10253	0.48	0.011802	0.125	0.32039	0.819	0.52246	1	0.45797	0.937	0.21922	0.699	0.65474	1
3q loss	102 (19%)	426	0.9895	1	0.012484	0.129	0.75692	1	0.37043	0.884	0.32158	0.819	1	1	0.00033345	0.0112	0.17969	0.652	NA	NA	NA	NA	0.62983	1	0.78855	1
4p loss	72 (14%)	456	7.8031e-05	0.00468	0.74282	1	0.00026	0.00998	0.00013	0.00657	0.71839	1	0.021626	0.185	0.89524	1	0.92901	1	NA	NA	NA	NA	0.0458	0.307	0.39895	0.885
4q loss	65 (12%)	463	6.83e-06	0.0016	0.82834	1	2e-05	0.0016	2e-05	0.0016	0.43751	0.923	0.0029309	0.0469	0.27043	0.76	0.87687	1	NA	NA	NA	NA	0.02182	0.185	0.55006	1
5p loss	8 (2%)	520	0.010865	0.117	0.41337	0.893	0.01216	0.127	0.00102	0.0218	1	1	0.11609	0.509	0.46542	0.943	0.57143	1	NA	NA	NA	NA	1	1	1	1
5q loss	7 (1%)	521	0.031358	0.239	0.28809	0.783	0.02757	0.219	0.00231	0.0397	1	1	0.30359	0.803	0.70496	1	0.57143	1	NA	NA	NA	NA	1	1	1	1
6p loss	100 (19%)	428	0.42619	0.907	0.27068	0.76	0.03478	0.259	0.01838	0.168	0.015588	0.15	0.27926	0.773	0.0011779	0.0241	0.099757	0.471	0.50999	0.993	0.64274	1	0.03528	0.261	1	1
6q loss	128 (24%)	400	0.38493	0.884	0.66581	1	0.2788	0.773	0.17876	0.652	0.0036258	0.0534	0.66875	1	0.071656	0.4	0.44364	0.93	0.033704	0.253	0.64274	1	0.070049	0.398	0.47605	0.952
8p loss	137 (26%)	391	0.1891	0.668	0.67413	1	0.32949	0.832	0.1896	0.668	1	1	0.26684	0.758	0.038857	0.274	0.78018	1	0.96398	1	0.45797	0.937	0.13031	0.543	0.055893	0.345
8q loss	65 (12%)	463	0.50541	0.986	0.45868	0.937	0.56963	1	0.15881	0.61	1	1	1	1	0.0053613	0.0705	0.98825	1	NA	NA	NA	NA	0.1994	0.676	0.056009	0.345
9p loss	149 (28%)	379	1.6778e-05	0.0016	0.057341	0.348	9.9999e-06	0.0016	5.9999e-05	0.00384	0.085377	0.436	0.0016012	0.0301	0.00088656	0.0203	0.61251	1	1	1	0.87234	1	0.13321	0.548	0.65544	1
9q loss	151 (29%)	377	0.0003454	0.0112	0.056487	0.345	9.9999e-06	0.0016	9.9999e-06	0.0016	0.09412	0.459	0.0042452	0.0598	0.001283	0.0251	0.39213	0.885	1	1	0.87234	1	0.12028	0.513	0.8227	1
10p loss	68 (13%)	460	0.29927	0.803	0.26521	0.756	0.079919	0.42	0.01037	0.114	0.14166	0.56	0.58584	1	0.279	0.773	0.16317	0.617	NA	NA	NA	NA	0.551	1	0.20927	0.69
10q loss	89 (17%)	439	0.55512	1	0.5363	1	0.098049	0.468	0.00233	0.0397	0.4848	0.964	0.62659	1	0.11478	0.509	0.2123	0.694	NA	NA	NA	NA	0.28461	0.781	0.27762	0.773
11p loss	18 (3%)	510	0.0036741	0.0534	0.0538	0.34	0.28626	0.781	0.40377	0.885	0.14093	0.56	0.50451	0.986	1	1	0.76175	1	NA	NA	NA	NA	1	1	1	1
11q loss	23 (4%)	505	0.0023586	0.0397	0.0059043	0.0751	0.4567	0.937	0.51197	0.993	0.21667	0.697	0.38498	0.884	0.37983	0.884	0.35795	0.87	NA	NA	NA	NA	0.64332	1	1	1
12p loss	4 (1%)	524	0.26058	0.745	0.68993	1	0.77308	1	1	1	1	1	1	1	0.62009	1	NA	NA	NA	NA	NA	NA	0.40848	0.885	1	1
12q loss	4 (1%)	524	0.83628	1	0.31222	0.808	0.15991	0.612	0.40669	0.885	1	1	1	1	1	1	NA	NA	NA	NA	NA	NA	1	1	1	1
13q loss	70 (13%)	458	0.00096671	0.0216	0.81206	1	0.00012	0.00657	2e-05	0.0016	0.2894	0.785	0.030864	0.237	0.34873	0.854	0.92901	1	NA	NA	NA	NA	0.24103	0.722	0.22639	0.7
14q loss	216 (41%)	312	0.00073822	0.0185	0.25666	0.741	9.9999e-06	0.0016	0.00013	0.00657	0.00072406	0.0185	0.0011057	0.0231	0.026646	0.217	0.036249	0.266	0.20118	0.677	0.073025	0.404	0.01899	0.169	0.68602	1
15q loss	35 (7%)	493	0.0017229	0.0318	0.989	1	0.00053999	0.0157	0.00033	0.0112	1	1	0.014226	0.142	0.045788	0.307	0.94906	1	NA	NA	NA	NA	0.03682	0.266	0.38229	0.884
16p loss	10 (2%)	518	0.088147	0.445	0.65204	1	0.39472	0.885	0.01636	0.152	0.34636	0.853	1	1	1	1	NA	NA	NA	NA	NA	NA	0.40282	0.885	1	1
16q loss	16 (3%)	512	0.13455	0.548	0.33213	0.832	0.41411	0.893	0.0050799	0.0677	0.4341	0.918	1	1	0.79638	1	NA	NA	NA	NA	NA	NA	0.16637	0.626	1	1
17p loss	46 (9%)	482	0.40046	0.885	0.30014	0.803	0.14093	0.56	0.13206	0.546	0.37479	0.884	0.047395	0.315	0.19735	0.674	0.32099	0.819	NA	NA	NA	NA	1	1	0.71264	1
17q loss	28 (5%)	500	0.45871	0.937	0.7868	1	0.30821	0.807	0.26062	0.745	1	1	0.17989	0.652	0.31088	0.807	NA	NA	NA	NA	NA	NA	0.84257	1	1	1
18p loss	93 (18%)	435	0.001009	0.0218	0.092677	0.454	0.00031	0.0112	0.00025	0.00998	1	1	0.079678	0.42	0.23412	0.709	0.86863	1	NA	NA	NA	NA	0.23372	0.709	0.097785	0.468
18q loss	95 (18%)	433	0.0059483	0.0751	0.11334	0.508	0.0088899	0.102	0.0043	0.0598	1	1	0.11279	0.508	0.1934	0.674	0.81453	1	NA	NA	NA	NA	0.21256	0.694	0.28021	0.773
19p loss	11 (2%)	517	2.7795e-05	0.00205	0.09268	0.454	0.02454	0.205	0.00059999	0.0169	1	1	0.39125	0.885	0.75375	1	NA	NA	NA	NA	NA	NA	0.12022	0.513	1	1
19q loss	4 (1%)	524	0.0023462	0.0397	0.84447	1	0.19438	0.674	0.00273	0.0444	1	1	0.11838	0.512	1	1	NA	NA	NA	NA	NA	NA	1	1	1	1
20p loss	8 (2%)	520	0.72387	1	0.70111	1	0.78975	1	0.61418	1	1	1	0.36609	0.881	1	1	NA	NA	NA	NA	NA	NA	0.1565	0.604	0.2501	0.732
20q loss	3 (1%)	525	0.87846	1	0.11489	0.509	0.22952	0.706	0.10676	0.498	NA	NA	0.40215	0.885	1	1	NA	NA	NA	NA	NA	NA	1	1	0.069149	0.395
21q loss	55 (10%)	473	0.69707	1	0.72314	1	0.076419	0.41	0.00126	0.0251	0.084408	0.436	1	1	0.46085	0.937	0.80443	1	NA	NA	NA	NA	0.58154	1	1	1
22q loss	39 (7%)	489	0.0090044	0.102	0.24236	0.722	0.01897	0.169	0.15662	0.604	1	1	0.10007	0.471	0.86262	1	0.91098	1	NA	NA	NA	NA	1	1	0.0095931	0.107
xp loss	45 (9%)	483	0.25021	0.732	0.89815	1	0.95055	1	0.51498	0.995	0.21667	0.697	0.82269	1	0.19736	0.674	0.37674	0.884	NA	NA	NA	NA	0.80912	1	0.14923	0.585
xq loss	45 (9%)	483	0.18754	0.668	0.67311	1	0.95039	1	0.51473	0.995	0.24294	0.722	1	1	0.19736	0.674	0.71599	1	NA	NA	NA	NA	0.58493	1	0.15002	0.585
