gene1	gene2	pval	qval
17p-Amp	Del_6q25.3	0.000108	1
17q-Amp	Del_14q24.2	0.000148	1
Amp_7q31.2	Del_14q24.2	0.00017	1
17p-Amp	Del_14q11.2	0.000227	1
17q-Amp	14q-Del	0.000251	1
7p-Amp	Del_9p21.3	0.000297	1
7q-Amp	Del_9p21.3	0.000297	1
17p-Amp	Del_22q12.2	0.000322	1
17p-Amp	Del_4q34.3	0.000323	1
Amp_7q31.2	Del_6q25.3	0.000626	1
22q-Del	Amp_7q31.2	0.000672	1
17q-Amp	Del_9p21.3	0.000842	1
7p-Amp	Del_6q25.3	0.000925	1
7q-Amp	Del_6q25.3	0.000925	1
Amp_7q31.2	Del_9p21.3	0.000956	1
17p-Amp	Del_3p22.1	0.000993	1
Amp_7q31.2	Del_4q34.3	0.000995	1
7p-Amp	22q-Del	0.00117	1
7q-Amp	22q-Del	0.00117	1
17q-Amp	Del_14q11.2	0.00149	1
7p-Amp	Del_4q34.3	0.00151	1
7q-Amp	Del_4q34.3	0.00151	1
3q-Amp	22q-Del	0.00152	1
Amp_7q31.2	Del_22q12.2	0.00177	1
16q-Amp	Del_9p21.3	0.00178	1
17q-Amp	22q-Del	0.0024	1
7p-Amp	Del_14q11.2	0.00277	1
7q-Amp	Del_14q11.2	0.00277	1
Amp_7q31.2	Del_11q22.3	0.00278	1
Amp_7q31.2	Del_2q37.3	0.00288	1
7p-Amp	Del_22q12.2	0.00298	1
7q-Amp	Del_22q12.2	0.00298	1
7p-Amp	Del_2q37.3	0.00372	1
7q-Amp	Del_2q37.3	0.00372	1
3p-Amp	Del_1p36.31	0.00378	1
17p-Amp	Del_11q23.3	0.00398	1
7p-Amp	Del_11q22.3	0.00399	1
7q-Amp	Del_11q22.3	0.00399	1
17q-Amp	Del_6q25.3	0.00421	1
17q-Amp	Del_4q34.3	0.00501	1
16q-Amp	Del_1p36.31	0.00518	1
17q-Amp	Del_3p22.1	0.00519	1
3p-Amp	22q-Del	0.00542	1
17q-Amp	Del_22q12.2	0.00546	1
Amp_7q31.2	Del_3p22.1	0.00557	1
17p-Amp	Del_11q22.3	0.00617	1
Amp_7q31.2	Del_14q11.2	0.0063	1
7p-Amp	Del_3p22.1	0.0074	1
7q-Amp	Del_3p22.1	0.0074	1
17q-Amp	Del_19q13.42	0.00902	1
Amp_7q31.2	Del_19q13.42	0.0095	1
3p-Amp	Del_14q24.2	0.011	1
3q-Amp	Del_22q12.2	0.011	1
7p-Amp	Del_19q13.42	0.0117	1
7q-Amp	Del_19q13.42	0.0117	1
16q-Amp	14q-Del	0.0118	1
Amp_7q31.2	Del_11q23.3	0.0121	1
3p-Amp	14q-Del	0.0132	1
SETD2	17p-Amp	0.0148	1
17p-Amp	Del_19p13.3	0.0149	1
17p-Amp	Del_19q13.42	0.0149	1
16p-Amp	Del_2q37.3	0.0154	1
7p-Amp	Del_11q23.3	0.0161	1
7q-Amp	Del_11q23.3	0.0161	1
16q-Amp	Del_2q37.3	0.0191	1
16p-Amp	Del_9p21.3	0.0208	1
PBRM1	17p-Amp	0.0264	1
NF2	Amp_7q31.2	0.0265	1
3q-Amp	Del_14q24.2	0.028	1
16q-Amp	Del_14q24.2	0.03	1
Amp_7q31.2	Del_2q22.1	0.031	1
3q-Amp	Del_6q25.3	0.0316	1
NF2	7p-Amp	0.0325	1
NF2	7q-Amp	0.0325	1
3p-Amp	Del_22q12.2	0.0331	1
3q-Amp	14q-Del	0.0337	1
7p-Amp	Del_2q22.1	0.036	1
7q-Amp	Del_2q22.1	0.036	1
MET	16p-Amp	0.0383	1
3q-Amp	Del_1p36.31	0.0408	1
16q-Amp	Del_3p22.1	0.0427	1
16q-Amp	Del_19q13.42	0.0428	1
17p-Amp	Del_2p12	0.0434	1
17p-Amp	Del_2q22.1	0.0434	1
Amp_7q31.2	Del_16q24.2	0.0436	1
17q-Amp	Del_11q22.3	0.0443	1
17q-Amp	Del_11q23.3	0.0459	1
16q-Amp	Del_14q11.2	0.0497	1
MET	16q-Amp	0.0513	1
7p-Amp	Del_16q24.2	0.0521	1
7q-Amp	Del_16q24.2	0.0521	1
12q-Amp	Del_6q25.3	0.0553	1
KRAS	Amp_7q31.2	0.0556	1
CUL3	12p-Amp	0.056	1
NF2	12p-Amp	0.056	1
12p-Amp	Del_2q37.3	0.056	1
CUL3	12q-Amp	0.0616	1
NF2	12q-Amp	0.0616	1
12q-Amp	Del_2q37.3	0.0616	1
3p-Amp	Del_6q25.3	0.0621	1
KRAS	7p-Amp	0.0631	1
KRAS	7q-Amp	0.0631	1
PIK3CA	7p-Amp	0.0631	1
PIK3CA	7q-Amp	0.0631	1
12q-Amp	Del_1p36.31	0.0641	1
17p-Amp	Del_16q24.2	0.0646	1
16q-Amp	Del_4q34.3	0.0674	1
17q-Amp	Del_19p13.3	0.0682	1
3p-Amp	Del_9p21.3	0.0684	1
PBRM1	20p-Amp	0.0702	1
Amp_7q31.2	Del_19p13.3	0.0709	1
12q-Amp	Del_9p21.3	0.0736	1
PBRM1	20q-Amp	0.0738	1
16q-Amp	22q-Del	0.0753	1
16p-Amp	14q-Del	0.0758	1
16p-Amp	Del_1p36.31	0.077	1
7p-Amp	Del_19p13.3	0.0826	1
7q-Amp	Del_19p13.3	0.0826	1
PBRM1	16q-Amp	0.0829	1
3p-Amp	Del_11q23.3	0.087	1
16q-Amp	Del_11q23.3	0.0882	1
CUL3	20p-Amp	0.0898	1
SETD2	17q-Amp	0.0929	1
CUL3	20q-Amp	0.094	1
16q-Amp	Del_2q22.1	0.0951	1
3q-Amp	Del_4q34.3	0.0961	1
BRAF	Amp_7q31.2	0.0997	1
12q-Amp	Del_4q34.3	0.101	1
17q-Amp	Del_2q37.3	0.108	1
MET	Del_9p21.3	0.109	1
ATP1B1	17q-Amp	0.11	1
BRAF	7p-Amp	0.11	1
BRAF	7q-Amp	0.11	1
CUL3	Amp_7q31.2	0.112	1
16q-Amp	Del_11q22.3	0.113	1
ATP1B1	Amp_7q31.2	0.114	1
TP53	Amp_7q31.2	0.114	1
SETD2	7p-Amp	0.12	1
SETD2	7q-Amp	0.12	1
3p-Amp	Del_3p22.1	0.122	1
12p-Amp	Del_1p36.31	0.127	1
ATP1B1	7p-Amp	0.129	1
ATP1B1	7q-Amp	0.129	1
TP53	7p-Amp	0.129	1
TP53	7q-Amp	0.129	1
16p-Amp	Del_3p22.1	0.129	1
16q-Amp	Del_22q12.2	0.13	1
CUL3	7p-Amp	0.131	1
CUL3	7q-Amp	0.131	1
12p-Amp	Del_11q22.3	0.134	1
NF2	3q-Amp	0.135	1
TP53	12p-Amp	0.135	1
16p-Amp	Del_14q24.2	0.135	1
3q-Amp	Del_2q37.3	0.135	1
16p-Amp	Del_4q34.3	0.137	1
TP53	12q-Amp	0.144	1
16q-Amp	Del_6q25.3	0.145	1
12q-Amp	Del_11q22.3	0.15	1
ATP1B1	17p-Amp	0.151	1
TP53	17p-Amp	0.151	1
2q-Amp	Del_22q12.2	0.154	1
MET	3p-Amp	0.155	1
12p-Amp	Del_9p21.3	0.155	1
CUL3	17p-Amp	0.157	1
NF2	17p-Amp	0.157	1
17p-Amp	Del_2q37.3	0.157	1
17q-Amp	Del_16q24.2	0.161	1
12p-Amp	Del_6q25.3	0.164	1
2q-Amp	22q-Del	0.164	1
20p-Amp	Del_4q34.3	0.165	1
PBRM1	3p-Amp	0.169	1
12q-Amp	Del_22q12.2	0.172	1
17q-Amp	Del_2p12	0.174	1
17q-Amp	Del_2q22.1	0.174	1
20q-Amp	Del_4q34.3	0.175	1
3p-Amp	Del_4q34.3	0.176	1
16p-Amp	Del_14q11.2	0.177	1
Amp_7q31.2	Del_2p12	0.179	1
Amp_7q31.2	Del_5p15.33	0.179	1
12p-Amp	Del_2p12	0.18	1
12p-Amp	Del_2q22.1	0.18	1
12p-Amp	Del_5p15.33	0.18	1
SETD2	3q-Amp	0.184	1
TP53	20p-Amp	0.187	1
16p-Amp	Del_19q13.42	0.187	1
12q-Amp	Del_2p12	0.191	1
12q-Amp	Del_2q22.1	0.191	1
12q-Amp	Del_5p15.33	0.191	1
TP53	20q-Amp	0.193	1
12q-Amp	22q-Del	0.198	1
3q-Amp	Del_14q11.2	0.198	1
7p-Amp	Del_2p12	0.199	1
7p-Amp	Del_5p15.33	0.199	1
7q-Amp	Del_2p12	0.199	1
7q-Amp	Del_5p15.33	0.199	1
CUL3	3p-Amp	0.2	1
NF2	3p-Amp	0.2	1
3p-Amp	Del_2q37.3	0.2	1
3q-Amp	Del_19p13.3	0.203	1
3q-Amp	Del_19q13.42	0.203	1
PBRM1	17q-Amp	0.206	1
16q-Amp	Del_19p13.3	0.211	1
PBRM1	Amp_7q31.2	0.213	1
Amp_5q35.3	Amp_7q31.2	0.213	1
3q-Amp	Del_11q23.3	0.215	1
16p-Amp	22q-Del	0.223	1
SETD2	Amp_7q31.2	0.224	1
17p-Amp	Del_5p15.33	0.225	1
12p-Amp	Del_4q34.3	0.226	1
3p-Amp	Del_11q22.3	0.227	1
3p-Amp	Del_16q24.2	0.235	1
MET	3q-Amp	0.238	1
SMARCB1	20p-Amp	0.238	1
12p-Amp	Del_11q23.3	0.238	1
20p-Amp	Del_2p12	0.238	1
20p-Amp	Del_2q22.1	0.238	1
20p-Amp	Del_5p15.33	0.238	1
FGFR3	12p-Amp	0.24	1
KIAA0922	12p-Amp	0.24	1
PBRM1	7p-Amp	0.243	1
PBRM1	7q-Amp	0.243	1
7p-Amp	Amp_5q35.3	0.243	1
7q-Amp	Amp_5q35.3	0.243	1
SMARCB1	20q-Amp	0.245	1
20q-Amp	Del_2p12	0.245	1
20q-Amp	Del_2q22.1	0.245	1
20q-Amp	Del_5p15.33	0.245	1
TP53	3q-Amp	0.248	1
3q-Amp	Del_9p21.3	0.251	1
FGFR3	12q-Amp	0.252	1
KIAA0922	12q-Amp	0.252	1
MET	Amp_2q32.1	0.255	1
ATP1B1	16p-Amp	0.256	1
TP53	16p-Amp	0.256	1
12q-Amp	Del_11q23.3	0.259	1
20p-Amp	Del_1p36.31	0.261	1
16p-Amp	Del_6q25.3	0.267	1
ALMS1	7p-Amp	0.269	1
ALMS1	7q-Amp	0.269	1
FGFR3	17q-Amp	0.27	1
KRAS	17q-Amp	0.27	1
FGFR3	Amp_7q31.2	0.276	1
PIK3CA	Amp_7q31.2	0.276	1
MET	SETD2	0.277	1
3p-Amp	Del_19p13.3	0.277	1
3p-Amp	Del_19q13.42	0.277	1
20q-Amp	Del_1p36.31	0.278	1
KDM6A	Del_1p36.31	0.279	1
MET	Del_22q12.2	0.279	1
PCF11	Del_1p36.31	0.279	1
12p-Amp	Del_22q12.2	0.28	1
ATP1B1	16q-Amp	0.283	1
TP53	16q-Amp	0.283	1
CUL3	17q-Amp	0.285	1
KDM6A	17q-Amp	0.285	1
NF2	17q-Amp	0.285	1
20p-Amp	Del_9p21.3	0.287	1
20p-Amp	Del_14q24.2	0.287	1
SETD2	3p-Amp	0.289	1
3q-Amp	Del_3p22.1	0.29	1
AR	7p-Amp	0.291	1
AR	7q-Amp	0.291	1
PCF11	Del_22q12.2	0.291	1
SMARCA4	Del_22q12.2	0.291	1
20p-Amp	Del_22q12.2	0.292	1
MET	22q-Del	0.296	1
FGFR3	7p-Amp	0.299	1
FGFR3	7q-Amp	0.299	1
MET	2q-Amp	0.301	1
KDM6A	22q-Del	0.303	1
PCF11	22q-Del	0.303	1
SMARCA4	22q-Del	0.303	1
20q-Amp	Del_9p21.3	0.303	1
20q-Amp	Del_14q24.2	0.303	1
3q-Amp	Del_2p12	0.304	1
3q-Amp	Del_2q22.1	0.304	1
12p-Amp	Del_16q24.2	0.305	1
SETD2	20p-Amp	0.306	1
20q-Amp	Del_22q12.2	0.31	1
Amp_2q32.1	Del_11q22.3	0.312	1
CCBL2	17q-Amp	0.314	1
16p-Amp	Del_22q12.2	0.315	1
12p-Amp	22q-Del	0.316	1
MET	20p-Amp	0.317	1
CCBL2	Amp_7q31.2	0.318	1
SETD2	20q-Amp	0.319	1
20p-Amp	14q-Del	0.322	1
12q-Amp	Del_16q24.2	0.323	1
PCF11	16q-Amp	0.324	1
20p-Amp	22q-Del	0.325	1
TP53	3p-Amp	0.326	1
PCF11	7p-Amp	0.327	1
PCF11	7q-Amp	0.327	1
FGFR3	17p-Amp	0.329	1
KDM6A	Del_14q11.2	0.329	1
KRAS	17p-Amp	0.329	1
NF2	Del_14q11.2	0.329	1
SMARCA4	Del_14q11.2	0.329	1
Del_2q37.3	Del_14q11.2	0.329	1
MET	20q-Amp	0.332	1
CCBL2	7p-Amp	0.334	1
CCBL2	7q-Amp	0.334	1
Amp_2q32.1	Del_6q25.3	0.334	1
TP53	17q-Amp	0.335	1
20q-Amp	14q-Del	0.339	1
PCF11	20p-Amp	0.34	1
20p-Amp	Del_2q37.3	0.34	1
16p-Amp	Del_2p12	0.344	1
16p-Amp	Del_2q22.1	0.344	1
20q-Amp	22q-Del	0.344	1
3q-Amp	Del_11q22.3	0.344	1
PCF11	20q-Amp	0.35	1
20q-Amp	Del_2q37.3	0.35	1
AR	MET	0.355	1
CCBL2	17p-Amp	0.355	1
KDM6A	Del_14q24.2	0.356	1
NF2	Del_14q24.2	0.356	1
PCF11	Del_9p21.3	0.356	1
SMARCA4	Del_14q24.2	0.356	1
SETD2	Amp_2q32.1	0.357	1
3p-Amp	Del_14q11.2	0.357	1
2q-Amp	Del_11q22.3	0.359	1
12q-Amp	Del_3p22.1	0.361	1
ALMS1	Del_1p36.31	0.362	1
16p-Amp	Del_16q24.2	0.368	1
KDM6A	17p-Amp	0.37	1
PCF11	17p-Amp	0.37	1
KDM6A	14q-Del	0.371	1
KIAA0922	3q-Amp	0.371	1
KRAS	3q-Amp	0.371	1
NF2	14q-Del	0.371	1
PIK3CA	3q-Amp	0.371	1
SMARCA4	14q-Del	0.371	1
SETD2	16q-Amp	0.372	1
AR	Del_4q34.3	0.373	1
12p-Amp	Del_19p13.3	0.373	1
16q-Amp	Del_2p12	0.373	1
12q-Amp	14q-Del	0.376	1
2q-Amp	Del_6q25.3	0.381	1
Amp_2q32.1	Del_11q23.3	0.381	1
3p-Amp	Del_2p12	0.383	1
3p-Amp	Del_2q22.1	0.383	1
ZNF814	17q-Amp	0.384	1
PBRM1	3q-Amp	0.385	1
3q-Amp	Amp_5q35.3	0.385	1
12q-Amp	Del_19p13.3	0.391	1
16p-Amp	Del_11q23.3	0.392	1
ZNF814	Amp_7q31.2	0.393	1
Amp_2q32.1	Del_22q12.2	0.398	1
16p-Amp	Del_11q22.3	0.399	1
20p-Amp	Del_16q24.2	0.401	1
SETD2	2q-Amp	0.404	1
16q-Amp	Del_16q24.2	0.404	1
AR	3p-Amp	0.407	1
BRAF	17q-Amp	0.408	1
20q-Amp	Del_16q24.2	0.411	1
ALMS1	Del_14q11.2	0.412	1
22q-Del	Amp_2q32.1	0.417	1
TP53	Del_22q12.2	0.423	1
ERBB2	12p-Amp	0.426	1
ZNF814	7p-Amp	0.428	1
ZNF814	7q-Amp	0.428	1
2q-Amp	Del_11q23.3	0.428	1
12q-Amp	Del_14q11.2	0.432	1
AR	Del_6q25.3	0.435	1
TP53	22q-Del	0.436	1
ERBB2	12q-Amp	0.439	1
ALMS1	Del_14q24.2	0.44	1
CUL3	3q-Amp	0.44	1
PCF11	3q-Amp	0.44	1
KIAA0922	3p-Amp	0.45	1
KRAS	3p-Amp	0.45	1
PIK3CA	3p-Amp	0.45	1
ATP1B1	12p-Amp	0.452	1
BRAF	3q-Amp	0.453	1
KDM6A	MET	0.453	1
MET	NF2	0.453	1
MET	PCF11	0.453	1
MET	SMARCA4	0.453	1
MET	Del_2q37.3	0.453	1
ALMS1	14q-Del	0.454	1
FGFR3	16p-Amp	0.455	1
KIAA0922	16p-Amp	0.455	1
PIK3CA	16p-Amp	0.455	1
Amp_2q32.1	Del_14q11.2	0.455	1
AR	20p-Amp	0.459	1
NEFH	17q-Amp	0.463	1
PTEN	17q-Amp	0.463	1
SMARCB1	17q-Amp	0.463	1
17q-Amp	Del_5p15.33	0.463	1
PBRM1	12p-Amp	0.464	1
PBRM1	16p-Amp	0.464	1
20q-Amp	Del_11q22.3	0.466	1
BCLAF1	Del_1p36.31	0.468	1
BRAF	17p-Amp	0.468	1
PTEN	Del_1p36.31	0.468	1
SMARCB1	Del_1p36.31	0.468	1
ATP1B1	12q-Amp	0.47	1
BCLAF1	Amp_7q31.2	0.47	1
NF2	Del_4q34.3	0.471	1
AR	20q-Amp	0.472	1
ZNF814	17p-Amp	0.473	1
Amp_5q35.3	Del_11q22.3	0.475	1
BCLAF1	Del_22q12.2	0.479	1
NEFH	Del_22q12.2	0.479	1
PTEN	Del_22q12.2	0.479	1
AR	2q-Amp	0.481	1
FGFR3	16q-Amp	0.484	1
KIAA0922	16q-Amp	0.484	1
PIK3CA	16q-Amp	0.484	1
PBRM1	12q-Amp	0.487	1
ATP1B1	Del_9p21.3	0.488	1
ERBB2	20p-Amp	0.49	1
BCLAF1	22q-Del	0.491	1
MET	ZNF814	0.491	1
MET	Del_16q24.2	0.491	1
NEFH	22q-Del	0.491	1
PTEN	22q-Del	0.491	1
PBRM1	Amp_2q32.1	0.496	1
Amp_2q32.1	Del_14q24.2	0.496	1
ALMS1	16q-Amp	0.497	1
ERBB2	20q-Amp	0.497	1
BCLAF1	7p-Amp	0.5	1
BCLAF1	7q-Amp	0.5	1
3q-Amp	Del_16q24.2	0.501	1
ALMS1	17q-Amp	0.502	1
3p-Amp	Amp_5q35.3	0.503	1
ZNF814	Del_4q34.3	0.508	1
CUL3	Del_11q22.3	0.509	1
PCF11	Del_11q22.3	0.509	1
SMARCA4	Del_11q22.3	0.509	1
ALMS1	Amp_7q31.2	0.51	1
BCLAF1	Del_14q11.2	0.516	1
PTEN	Del_14q11.2	0.516	1
14q-Del	Amp_2q32.1	0.517	1
12q-Amp	Del_14q24.2	0.521	1
17p-Amp	Amp_5q35.3	0.523	1
2q-Amp	Del_14q11.2	0.526	1
BRAF	3p-Amp	0.529	1
KDM6A	Amp_2q32.1	0.529	1
NF2	Amp_2q32.1	0.529	1
PCF11	Amp_2q32.1	0.529	1
PCF11	Del_6q25.3	0.529	1
SMARCA4	Del_6q25.3	0.529	1
12p-Amp	14q-Del	0.531	1
ALMS1	MET	0.532	1
FGFR3	Del_1p36.31	0.532	1
KIAA0922	Del_1p36.31	0.532	1
KRAS	Del_1p36.31	0.532	1
KRT2	Del_1p36.31	0.532	1
KRTAP4-5	Del_1p36.31	0.532	1
MET	Del_19p13.3	0.532	1
MET	Del_19q13.42	0.532	1
AR	Del_1p36.31	0.533	1
PCF11	17q-Amp	0.533	1
KDM6A	12p-Amp	0.535	1
PCF11	12p-Amp	0.535	1
NEFH	17p-Amp	0.537	1
PTEN	17p-Amp	0.537	1
SMARCB1	17p-Amp	0.537	1
MET	Del_1p36.31	0.539	1
PBRM1	2q-Amp	0.54	1
Amp_5q35.3	Del_11q23.3	0.54	1
BCLAF1	12p-Amp	0.541	1
BCLAF1	Del_9p21.3	0.541	1
BCLAF1	Del_14q24.2	0.541	1
NEFH	12p-Amp	0.541	1
PTEN	12p-Amp	0.541	1
PTEN	Del_9p21.3	0.541	1
PTEN	Del_14q24.2	0.541	1
SMARCB1	12p-Amp	0.541	1
SMARCB1	Del_9p21.3	0.541	1
KDM6A	Amp_7q31.2	0.542	1
PCF11	Amp_7q31.2	0.542	1
FGFR3	Del_22q12.2	0.543	1
KIAA0922	Del_22q12.2	0.543	1
KRAS	Del_22q12.2	0.543	1
KRT2	Del_22q12.2	0.543	1
KRTAP4-5	Del_22q12.2	0.543	1
PIK3CA	Del_22q12.2	0.543	1
ATP1B1	20p-Amp	0.546	1
ALMS1	Del_4q34.3	0.548	1
AR	Del_22q12.2	0.55	1
CUL3	SETD2	0.55	1
KDM6A	SETD2	0.55	1
PCF11	SETD2	0.55	1
SETD2	SMARCA4	0.55	1
ERBB2	3q-Amp	0.553	1
PCF11	16p-Amp	0.553	1
BCLAF1	14q-Del	0.554	1
FGFR3	22q-Del	0.554	1
KIAA0922	22q-Del	0.554	1
KRAS	22q-Del	0.554	1
KRT2	22q-Del	0.554	1
KRTAP4-5	22q-Del	0.554	1
PIK3CA	22q-Del	0.554	1
PTEN	14q-Del	0.554	1
PCF11	3p-Amp	0.555	1
ATP1B1	20q-Amp	0.556	1
KDM6A	12q-Amp	0.557	1
PCF11	12q-Amp	0.557	1
BCLAF1	12q-Amp	0.559	1
NEFH	12q-Amp	0.559	1
PTEN	12q-Amp	0.559	1
SMARCB1	12q-Amp	0.559	1
ZNF814	Del_6q25.3	0.564	1
Amp_2q32.1	Del_16q24.2	0.564	1
2q-Amp	Del_14q24.2	0.565	1
AR	22q-Del	0.567	1
CUL3	Del_11q23.3	0.571	1
KDM6A	2q-Amp	0.571	1
KDM6A	Del_11q23.3	0.571	1
NF2	2q-Amp	0.571	1
PCF11	2q-Amp	0.571	1
PCF11	Del_11q23.3	0.571	1
2q-Amp	Del_2q37.3	0.571	1
FGFR3	Del_14q11.2	0.576	1
KIAA0922	Del_14q11.2	0.576	1
KRT2	Del_14q11.2	0.576	1
KRTAP4-5	Del_14q11.2	0.576	1
MET	TP53	0.576	1
PIK3CA	Del_14q11.2	0.576	1
12p-Amp	Del_14q11.2	0.576	1
KDM6A	7p-Amp	0.58	1
KDM6A	7q-Amp	0.58	1
MET	12p-Amp	0.582	1
ALMS1	Del_11q22.3	0.584	1
2q-Amp	14q-Del	0.585	1
ALMS1	17p-Amp	0.587	1
AR	PBRM1	0.587	1
AR	Amp_5q35.3	0.587	1
BRAF	16p-Amp	0.588	1
20p-Amp	Del_14q11.2	0.588	1
ERBB2	Amp_7q31.2	0.596	1
PAM	Amp_7q31.2	0.596	1
12p-Amp	Del_3p22.1	0.597	1
FGFR3	Del_14q24.2	0.6	1
KIAA0922	Del_9p21.3	0.6	1
KIAA0922	Del_14q24.2	0.6	1
KRAS	Del_9p21.3	0.6	1
KRT2	Del_9p21.3	0.6	1
KRT2	Del_14q24.2	0.6	1
KRTAP4-5	Del_9p21.3	0.6	1
KRTAP4-5	Del_14q24.2	0.6	1
PIK3CA	Del_9p21.3	0.6	1
PIK3CA	Del_14q24.2	0.6	1
ALMS1	Amp_2q32.1	0.602	1
AR	Del_14q11.2	0.602	1
Amp_2q32.1	Del_19p13.3	0.602	1
Amp_2q32.1	Del_19q13.42	0.602	1
BRAF	Del_1p36.31	0.604	1
GXYLT1	Del_1p36.31	0.604	1
2q-Amp	Del_16q24.2	0.605	1
20p-Amp	Del_11q23.3	0.608	1
20q-Amp	Del_14q11.2	0.608	1
ZNF814	12p-Amp	0.611	1
ZNF814	3p-Amp	0.611	1
FGFR3	14q-Del	0.612	1
KIAA0922	14q-Del	0.612	1
KRT2	14q-Del	0.612	1
KRTAP4-5	14q-Del	0.612	1
PIK3CA	14q-Del	0.612	1
BRAF	16q-Amp	0.614	1
BRAF	Del_22q12.2	0.614	1
GXYLT1	Del_22q12.2	0.614	1
KIAA0922	17q-Amp	0.614	1
KRTAP4-5	17q-Amp	0.614	1
MET	12q-Amp	0.614	1
PIK3CA	17q-Amp	0.614	1
AR	KDM6A	0.617	1
AR	NF2	0.617	1
AR	SMARCA4	0.617	1
ERBB2	7p-Amp	0.617	1
ERBB2	7q-Amp	0.617	1
KDM6A	Del_3p22.1	0.617	1
PAM	7p-Amp	0.617	1
PAM	7q-Amp	0.617	1
PCF11	Del_3p22.1	0.617	1
SMARCA4	Del_3p22.1	0.617	1
KIAA0922	Amp_7q31.2	0.62	1
KRTAP4-5	Amp_7q31.2	0.62	1
ERBB2	3p-Amp	0.621	1
20q-Amp	Del_11q23.3	0.622	1
BCLAF1	MET	0.624	1
BRAF	22q-Del	0.624	1
GXYLT1	22q-Del	0.624	1
MET	NEFH	0.624	1
MET	PTEN	0.624	1
MET	SMARCB1	0.624	1
MET	Del_2p12	0.624	1
MET	Del_2q22.1	0.624	1
MET	Del_5p15.33	0.624	1
NEFH	20p-Amp	0.629	1
PTEN	20p-Amp	0.629	1
MET	Del_6q25.3	0.63	1
ZNF814	12q-Amp	0.631	1
ATP1B1	3q-Amp	0.636	1
AR	Del_9p21.3	0.638	1
AR	Del_14q24.2	0.638	1
BCLAF1	Del_4q34.3	0.638	1
NEFH	20q-Amp	0.638	1
NEFH	Del_4q34.3	0.638	1
PTEN	20q-Amp	0.638	1
PTEN	Del_4q34.3	0.638	1
Del_4q34.3	Del_5p15.33	0.638	1
ALMS1	2q-Amp	0.64	1
ALMS1	Del_11q23.3	0.64	1
KRT2	12p-Amp	0.64	1
PIK3CA	12p-Amp	0.64	1
2q-Amp	Del_19p13.3	0.64	1
2q-Amp	Del_19q13.42	0.64	1
ATP1B1	Amp_2q32.1	0.642	1
ATP1B1	Del_6q25.3	0.642	1
BRAF	Del_14q11.2	0.644	1
GXYLT1	Del_14q11.2	0.644	1
KIAA0922	7p-Amp	0.646	1
KIAA0922	7q-Amp	0.646	1
KRTAP4-5	7p-Amp	0.646	1
KRTAP4-5	7q-Amp	0.646	1
Amp_2q32.1	Del_4q34.3	0.653	1
AR	14q-Del	0.656	1
KRT2	12q-Amp	0.656	1
PIK3CA	12q-Amp	0.656	1
12p-Amp	Del_14q24.2	0.664	1
BRAF	Del_9p21.3	0.665	1
BRAF	Del_14q24.2	0.665	1
CUL3	PBRM1	0.665	1
GXYLT1	Del_9p21.3	0.665	1
GXYLT1	Del_14q24.2	0.665	1
KDM6A	PBRM1	0.665	1
KDM6A	Amp_5q35.3	0.665	1
NF2	PBRM1	0.665	1
PBRM1	SMARCA4	0.665	1
PCF11	Amp_5q35.3	0.665	1
SMARCA4	Amp_5q35.3	0.665	1
Amp_5q35.3	Del_2q37.3	0.665	1
SMARCA4	Del_1p36.31	0.666	1
ALMS1	3p-Amp	0.668	1
BCLAF1	Del_11q22.3	0.669	1
NEFH	Del_11q22.3	0.669	1
PTEN	Del_11q22.3	0.669	1
SMARCB1	Del_11q22.3	0.669	1
CCBL2	3q-Amp	0.674	1
FGFR3	MET	0.675	1
KRAS	MET	0.675	1
KRT2	MET	0.675	1
KRTAP4-5	MET	0.675	1
MET	PIK3CA	0.675	1
BRAF	14q-Del	0.676	1
GXYLT1	14q-Del	0.676	1
ATP1B1	2q-Amp	0.677	1
BCLAF1	16p-Amp	0.677	1
SMARCB1	16p-Amp	0.677	1
16p-Amp	Del_5p15.33	0.677	1
Amp_2q32.1	Del_1p36.31	0.677	1
KIAA0922	17p-Amp	0.678	1
KRTAP4-5	17p-Amp	0.678	1
PIK3CA	17p-Amp	0.678	1
20p-Amp	Del_11q22.3	0.678	1
ALMS1	Del_3p22.1	0.68	1
AR	Del_19p13.3	0.68	1
AR	Del_19q13.42	0.68	1
KDM6A	Del_22q12.2	0.68	1
ZNF814	16q-Amp	0.681	1
PBRM1	Del_14q11.2	0.682	1
BCLAF1	Del_6q25.3	0.684	1
PTEN	Amp_2q32.1	0.684	1
PTEN	Del_6q25.3	0.684	1
SMARCB1	Amp_2q32.1	0.684	1
ERBB2	Del_1p36.31	0.685	1
PAM	Del_1p36.31	0.685	1
AR	Amp_7q31.2	0.686	1
FGFR3	Del_4q34.3	0.688	1
KIAA0922	Del_4q34.3	0.688	1
KRAS	Del_4q34.3	0.688	1
ALMS1	12p-Amp	0.689	1
12p-Amp	Del_19q13.42	0.689	1
CUL3	KDM6A	0.691	1
CUL3	NF2	0.691	1
CUL3	PCF11	0.691	1
CUL3	SMARCA4	0.691	1
KDM6A	NF2	0.691	1
KDM6A	PCF11	0.691	1
KDM6A	SMARCA4	0.691	1
NF2	PCF11	0.691	1
NF2	SMARCA4	0.691	1
PCF11	SMARCA4	0.691	1
PCF11	Del_2q37.3	0.691	1
SMARCA4	Del_2q37.3	0.691	1
ZNF814	Amp_5q35.3	0.693	1
ERBB2	Del_22q12.2	0.694	1
PAM	Del_22q12.2	0.694	1
BCLAF1	SETD2	0.7	1
NEFH	SETD2	0.7	1
PTEN	SETD2	0.7	1
SETD2	Del_5p15.33	0.7	1
ERBB2	22q-Del	0.702	1
PAM	22q-Del	0.702	1
BCLAF1	16q-Amp	0.705	1
SMARCB1	16q-Amp	0.705	1
16q-Amp	Del_5p15.33	0.705	1
ALMS1	12q-Amp	0.706	1
12q-Amp	Del_19q13.42	0.706	1
SMARCB1	3q-Amp	0.708	1
3q-Amp	Del_5p15.33	0.708	1
2q-Amp	Del_4q34.3	0.709	1
ZNF814	20p-Amp	0.711	1
PBRM1	Del_9p21.3	0.713	1
PBRM1	Del_14q24.2	0.713	1
AR	ATP1B1	0.714	1
AR	TP53	0.714	1
ATP1B1	Del_3p22.1	0.714	1
BCLAF1	2q-Amp	0.716	1
BCLAF1	Del_11q23.3	0.716	1
FGFR3	20p-Amp	0.716	1
KIAA0922	20p-Amp	0.716	1
KIAA0922	Del_11q22.3	0.716	1
KRAS	20p-Amp	0.716	1
KRAS	Del_11q22.3	0.716	1
KRT2	20p-Amp	0.716	1
KRTAP4-5	Del_11q22.3	0.716	1
NEFH	Del_11q23.3	0.716	1
PIK3CA	20p-Amp	0.716	1
PIK3CA	Del_11q22.3	0.716	1
PTEN	2q-Amp	0.716	1
PTEN	Del_11q23.3	0.716	1
SMARCB1	2q-Amp	0.716	1
SMARCB1	Del_11q23.3	0.716	1
2q-Amp	Del_5p15.33	0.716	1
CUL3	ZNF814	0.717	1
KDM6A	ZNF814	0.717	1
KDM6A	Del_16q24.2	0.717	1
NF2	ZNF814	0.717	1
NF2	Del_16q24.2	0.717	1
PCF11	ZNF814	0.717	1
PCF11	Del_16q24.2	0.717	1
SMARCA4	Del_16q24.2	0.717	1
ZNF814	Del_2q37.3	0.717	1
20p-Amp	Del_3p22.1	0.717	1
Del_2q37.3	Del_16q24.2	0.717	1
ERBB2	Del_14q11.2	0.719	1
ZNF814	20q-Amp	0.721	1
ALMS1	Amp_5q35.3	0.723	1
FGFR3	20q-Amp	0.723	1
KIAA0922	20q-Amp	0.723	1
KRAS	20q-Amp	0.723	1
KRT2	20q-Amp	0.723	1
PBRM1	Del_19q13.42	0.723	1
PCF11	Del_14q11.2	0.723	1
PIK3CA	20q-Amp	0.723	1
Amp_5q35.3	Del_19p13.3	0.723	1
20p-Amp	Del_6q25.3	0.725	1
ZNF814	Del_22q12.2	0.726	1
ATP1B1	3p-Amp	0.727	1
CCBL2	3p-Amp	0.728	1
PBRM1	14q-Del	0.728	1
20q-Amp	Del_3p22.1	0.728	1
FGFR3	Amp_2q32.1	0.729	1
KIAA0922	Amp_2q32.1	0.729	1
KIAA0922	Del_6q25.3	0.729	1
KRAS	Amp_2q32.1	0.729	1
KRAS	Del_6q25.3	0.729	1
KRT2	Del_6q25.3	0.729	1
KRTAP4-5	Amp_2q32.1	0.729	1
KRTAP4-5	Del_6q25.3	0.729	1
PIK3CA	Amp_2q32.1	0.729	1
PIK3CA	Del_6q25.3	0.729	1
BRAF	MET	0.731	1
GXYLT1	MET	0.731	1
SETD2	16p-Amp	0.736	1
ERBB2	Del_9p21.3	0.737	1
ERBB2	Del_14q24.2	0.737	1
PAM	Del_9p21.3	0.737	1
ERBB2	16p-Amp	0.738	1
ZNF814	22q-Del	0.738	1
20q-Amp	Del_6q25.3	0.738	1
ALMS1	16p-Amp	0.739	1
16p-Amp	Del_19p13.3	0.739	1
BRAF	Del_4q34.3	0.742	1
GXYLT1	Del_4q34.3	0.742	1
FGFR3	SETD2	0.743	1
KDM6A	3q-Amp	0.743	1
KRAS	SETD2	0.743	1
KRT2	SETD2	0.743	1
KRTAP4-5	SETD2	0.743	1
ALMS1	CUL3	0.745	1
ALMS1	PCF11	0.745	1
ALMS1	SMARCA4	0.745	1
ALMS1	Del_2q37.3	0.745	1
BRAF	12p-Amp	0.745	1
CUL3	Del_19p13.3	0.745	1
KDM6A	Del_19p13.3	0.745	1
KDM6A	Del_19q13.42	0.745	1
NF2	Del_19p13.3	0.745	1
NF2	Del_19q13.42	0.745	1
PCF11	Del_19q13.42	0.745	1
SMARCA4	Del_19p13.3	0.745	1
SMARCA4	Del_19q13.42	0.745	1
ERBB2	14q-Del	0.746	1
MET	Del_3p22.1	0.746	1
2q-Amp	Del_1p36.31	0.746	1
AR	BCLAF1	0.75	1
AR	NEFH	0.75	1
AR	SMARCB1	0.75	1
AR	Del_2p12	0.75	1
AR	Del_2q22.1	0.75	1
AR	Del_5p15.33	0.75	1
BCLAF1	Del_3p22.1	0.75	1
NEFH	Del_3p22.1	0.75	1
PTEN	Del_3p22.1	0.75	1
SMARCB1	Del_3p22.1	0.75	1
Del_3p22.1	Del_5p15.33	0.75	1
CUL3	Del_9p21.3	0.751	1
PCF11	Del_14q24.2	0.751	1
SMARCA4	Del_9p21.3	0.751	1
Del_2q37.3	Del_14q24.2	0.751	1
ATP1B1	PBRM1	0.753	1
AR	16p-Amp	0.757	1
BRAF	12q-Amp	0.757	1
ERBB2	16q-Amp	0.757	1
FGFR3	2q-Amp	0.758	1
KIAA0922	2q-Amp	0.758	1
KIAA0922	Del_11q23.3	0.758	1
KRAS	2q-Amp	0.758	1
KRAS	Del_11q23.3	0.758	1
KRTAP4-5	2q-Amp	0.758	1
KRTAP4-5	Del_11q23.3	0.758	1
PIK3CA	2q-Amp	0.758	1
PIK3CA	Del_11q23.3	0.758	1
BCLAF1	17q-Amp	0.764	1
BRAF	Del_11q22.3	0.765	1
GXYLT1	Del_11q22.3	0.765	1
PCF11	14q-Del	0.765	1
14q-Del	Del_2q37.3	0.765	1
ALMS1	ZNF814	0.767	1
ALMS1	Del_16q24.2	0.767	1
NEFH	Amp_7q31.2	0.77	1
PTEN	Amp_7q31.2	0.77	1
SMARCB1	Amp_7q31.2	0.77	1
ALMS1	Del_22q12.2	0.771	1
ATP1B1	CUL3	0.773	1
ATP1B1	KDM6A	0.773	1
ATP1B1	NF2	0.773	1
ATP1B1	SMARCA4	0.773	1
ATP1B1	Del_2q37.3	0.773	1
KDM6A	TP53	0.773	1
NF2	TP53	0.773	1
PCF11	TP53	0.773	1
SMARCA4	TP53	0.773	1
ALMS1	20p-Amp	0.775	1
20p-Amp	Del_19p13.3	0.775	1
20p-Amp	Del_19q13.42	0.775	1
BRAF	Amp_2q32.1	0.777	1
BRAF	Del_6q25.3	0.777	1
GXYLT1	Del_6q25.3	0.777	1
CCBL2	Del_1p36.31	0.778	1
SETD2	Del_14q11.2	0.778	1
ALMS1	22q-Del	0.782	1
FGFR3	3q-Amp	0.782	1
KRTAP4-5	3q-Amp	0.782	1
Amp_2q32.1	Del_9p21.3	0.782	1
ALMS1	20q-Amp	0.783	1
20q-Amp	Del_19p13.3	0.783	1
20q-Amp	Del_19q13.42	0.783	1
CCBL2	Del_22q12.2	0.784	1
BCLAF1	PBRM1	0.785	1
BCLAF1	Amp_5q35.3	0.785	1
NEFH	PBRM1	0.785	1
NEFH	Amp_5q35.3	0.785	1
PBRM1	PTEN	0.785	1
PBRM1	Del_5p15.33	0.785	1
PTEN	Amp_5q35.3	0.785	1
SMARCB1	Amp_5q35.3	0.785	1
Amp_5q35.3	Del_5p15.33	0.785	1
CUL3	16p-Amp	0.786	1
KDM6A	16p-Amp	0.786	1
SMARCB1	3p-Amp	0.786	1
3p-Amp	Del_5p15.33	0.786	1
AR	FGFR3	0.787	1
AR	KRT2	0.787	1
AR	KRTAP4-5	0.787	1
FGFR3	Del_3p22.1	0.787	1
KIAA0922	Del_3p22.1	0.787	1
KRAS	Del_3p22.1	0.787	1
KRT2	Del_3p22.1	0.787	1
KRTAP4-5	Del_3p22.1	0.787	1
KRAS	16p-Amp	0.788	1
KRT2	16p-Amp	0.788	1
KRTAP4-5	16p-Amp	0.788	1
BRAF	SETD2	0.789	1
GXYLT1	SETD2	0.789	1
ZNF814	Del_9p21.3	0.789	1
CCBL2	22q-Del	0.79	1
ALMS1	Del_19p13.3	0.791	1
ALMS1	Del_19q13.42	0.791	1
ERBB2	MET	0.791	1
AR	16q-Amp	0.792	1
NEFH	7p-Amp	0.792	1
NEFH	7q-Amp	0.792	1
PTEN	7p-Amp	0.792	1
PTEN	7q-Amp	0.792	1
SMARCB1	7p-Amp	0.792	1
SMARCB1	7q-Amp	0.792	1
ATP1B1	ZNF814	0.794	1
ATP1B1	Del_16q24.2	0.794	1
TP53	ZNF814	0.794	1
ZNF814	3q-Amp	0.796	1
AR	Del_11q22.3	0.8	1
ERBB2	Del_4q34.3	0.8	1
PAM	Del_4q34.3	0.8	1
BRAF	2q-Amp	0.801	1
BRAF	Del_11q23.3	0.801	1
GXYLT1	Del_11q23.3	0.801	1
BCLAF1	CUL3	0.802	1
BCLAF1	KDM6A	0.802	1
BCLAF1	NF2	0.802	1
BCLAF1	SMARCA4	0.802	1
CUL3	NEFH	0.802	1
CUL3	PTEN	0.802	1
CUL3	SMARCB1	0.802	1
CUL3	Del_2q22.1	0.802	1
KDM6A	NEFH	0.802	1
KDM6A	PTEN	0.802	1
KDM6A	SMARCB1	0.802	1
KDM6A	Del_2p12	0.802	1
KDM6A	Del_2q22.1	0.802	1
NEFH	PCF11	0.802	1
NEFH	Del_2q37.3	0.802	1
NF2	PTEN	0.802	1
NF2	Del_2p12	0.802	1
NF2	Del_2q22.1	0.802	1
NF2	Del_5p15.33	0.802	1
PCF11	PTEN	0.802	1
PCF11	Del_2p12	0.802	1
PCF11	Del_2q22.1	0.802	1
PCF11	Del_5p15.33	0.802	1
PTEN	SMARCA4	0.802	1
PTEN	Del_2q37.3	0.802	1
SMARCA4	SMARCB1	0.802	1
SMARCA4	Del_2p12	0.802	1
SMARCA4	Del_2q22.1	0.802	1
SMARCA4	Del_5p15.33	0.802	1
SMARCB1	Del_2q37.3	0.802	1
BRAF	20p-Amp	0.804	1
MET	Amp_5q35.3	0.804	1
BRAF	20q-Amp	0.809	1
KRAS	16q-Amp	0.809	1
KRT2	16q-Amp	0.809	1
KRTAP4-5	16q-Amp	0.809	1
SETD2	Del_14q24.2	0.809	1
ALMS1	ATP1B1	0.815	1
ALMS1	TP53	0.815	1
AR	3q-Amp	0.815	1
ATP1B1	Del_19p13.3	0.815	1
CUL3	16q-Amp	0.815	1
KDM6A	16q-Amp	0.815	1
TP53	Del_19p13.3	0.815	1
TP53	Del_19q13.42	0.815	1
CCBL2	Del_9p21.3	0.816	1
FGFR3	PBRM1	0.817	1
FGFR3	Amp_5q35.3	0.817	1
KIAA0922	PBRM1	0.817	1
KIAA0922	Amp_5q35.3	0.817	1
KRAS	PBRM1	0.817	1
KRAS	Amp_5q35.3	0.817	1
KRT2	PBRM1	0.817	1
KRT2	Amp_5q35.3	0.817	1
KRTAP4-5	PBRM1	0.817	1
KRTAP4-5	Amp_5q35.3	0.817	1
AR	Amp_2q32.1	0.818	1
BCLAF1	17p-Amp	0.818	1
Amp_2q32.1	Del_3p22.1	0.818	1
PAM	Del_11q22.3	0.819	1
MET	Del_4q34.3	0.82	1
BCLAF1	ZNF814	0.821	1
NEFH	ZNF814	0.821	1
NEFH	Del_16q24.2	0.821	1
PTEN	ZNF814	0.821	1
PTEN	Del_16q24.2	0.821	1
SMARCB1	ZNF814	0.821	1
ZNF814	Del_2p12	0.821	1
ZNF814	Del_2q22.1	0.821	1
ZNF814	Del_5p15.33	0.821	1
Del_2p12	Del_16q24.2	0.821	1
Del_2q22.1	Del_16q24.2	0.821	1
SETD2	14q-Del	0.824	1
AR	BRAF	0.826	1
AR	GXYLT1	0.826	1
BRAF	Del_3p22.1	0.826	1
GXYLT1	Del_3p22.1	0.826	1
SETD2	12p-Amp	0.826	1
ERBB2	Amp_2q32.1	0.828	1
ERBB2	Del_6q25.3	0.828	1
PAM	Del_6q25.3	0.828	1
CUL3	FGFR3	0.833	1
CUL3	KIAA0922	0.833	1
CUL3	KRAS	0.833	1
CUL3	KRT2	0.833	1
FGFR3	NF2	0.833	1
FGFR3	PCF11	0.833	1
FGFR3	SMARCA4	0.833	1
KDM6A	KIAA0922	0.833	1
KDM6A	KRAS	0.833	1
KDM6A	KRT2	0.833	1
KDM6A	KRTAP4-5	0.833	1
KDM6A	PIK3CA	0.833	1
KDM6A	3p-Amp	0.833	1
KIAA0922	NF2	0.833	1
KIAA0922	PCF11	0.833	1
KIAA0922	SMARCA4	0.833	1
KIAA0922	Del_2q37.3	0.833	1
KRAS	NF2	0.833	1
KRAS	PCF11	0.833	1
KRAS	SMARCA4	0.833	1
KRAS	Del_2q37.3	0.833	1
KRT2	NF2	0.833	1
KRT2	PCF11	0.833	1
KRT2	SMARCA4	0.833	1
KRT2	Del_2q37.3	0.833	1
KRTAP4-5	NF2	0.833	1
KRTAP4-5	PCF11	0.833	1
KRTAP4-5	SMARCA4	0.833	1
KRTAP4-5	Del_2q37.3	0.833	1
NF2	PIK3CA	0.833	1
PIK3CA	SMARCA4	0.833	1
PIK3CA	Del_2q37.3	0.833	1
2q-Amp	Del_9p21.3	0.834	1
AR	SETD2	0.835	1
ATP1B1	TP53	0.836	1
ERBB2	SETD2	0.838	1
PAM	SETD2	0.838	1
ALMS1	BCLAF1	0.839	1
ALMS1	NEFH	0.839	1
ALMS1	PTEN	0.839	1
ALMS1	SMARCB1	0.839	1
ALMS1	Del_2p12	0.839	1
ALMS1	Del_2q22.1	0.839	1
ALMS1	Del_5p15.33	0.839	1
BCLAF1	Del_19p13.3	0.839	1
BCLAF1	Del_19q13.42	0.839	1
NEFH	Del_19p13.3	0.839	1
NEFH	Del_19q13.42	0.839	1
PTEN	Del_19p13.3	0.839	1
PTEN	Del_19q13.42	0.839	1
Del_2p12	Del_19p13.3	0.839	1
Del_5p15.33	Del_19p13.3	0.839	1
Del_5p15.33	Del_19q13.42	0.839	1
FGFR3	3p-Amp	0.843	1
KRTAP4-5	3p-Amp	0.843	1
TP53	Del_14q11.2	0.843	1
SETD2	12q-Amp	0.844	1
ALMS1	3q-Amp	0.845	1
CUL3	Del_4q34.3	0.846	1
KDM6A	Del_4q34.3	0.846	1
PCF11	Del_4q34.3	0.846	1
SMARCA4	Del_4q34.3	0.846	1
AR	17q-Amp	0.847	1
ERBB2	2q-Amp	0.847	1
ERBB2	Del_11q23.3	0.847	1
PAM	Del_11q23.3	0.847	1
FGFR3	ZNF814	0.848	1
FGFR3	Del_16q24.2	0.848	1
KIAA0922	ZNF814	0.848	1
KIAA0922	Del_16q24.2	0.848	1
KRAS	ZNF814	0.848	1
KRAS	Del_16q24.2	0.848	1
KRT2	ZNF814	0.848	1
KRTAP4-5	ZNF814	0.848	1
PIK3CA	ZNF814	0.848	1
17q-Amp	Amp_5q35.3	0.849	1
BRAF	PBRM1	0.851	1
BRAF	Amp_5q35.3	0.851	1
GXYLT1	PBRM1	0.851	1
NEFH	Del_1p36.31	0.851	1
Del_1p36.31	Del_5p15.33	0.851	1
AR	Del_11q23.3	0.852	1
GXYLT1	3q-Amp	0.852	1
2q-Amp	Del_3p22.1	0.852	1
CCBL2	MET	0.855	1
ZNF814	16p-Amp	0.855	1
ATP1B1	BCLAF1	0.858	1
ATP1B1	NEFH	0.858	1
ATP1B1	PTEN	0.858	1
ATP1B1	SMARCB1	0.858	1
ATP1B1	Del_2p12	0.858	1
ATP1B1	Del_2q22.1	0.858	1
ATP1B1	Del_5p15.33	0.858	1
MET	Del_11q22.3	0.858	1
NEFH	TP53	0.858	1
PTEN	TP53	0.858	1
SMARCB1	TP53	0.858	1
TP53	Del_5p15.33	0.858	1
Del_2p12	Del_22q12.2	0.858	1
MET	Amp_7q31.2	0.859	1
TP53	Del_9p21.3	0.861	1
TP53	Del_14q24.2	0.861	1
CCBL2	Del_4q34.3	0.862	1
Amp_5q35.3	Del_6q25.3	0.862	1
KDM6A	20p-Amp	0.863	1
ALMS1	KIAA0922	0.864	1
ALMS1	KRAS	0.864	1
ALMS1	KRT2	0.864	1
ALMS1	KRTAP4-5	0.864	1
BRAF	CUL3	0.864	1
BRAF	KDM6A	0.864	1
BRAF	NF2	0.864	1
BRAF	SMARCA4	0.864	1
BRAF	Del_2q37.3	0.864	1
CUL3	GXYLT1	0.864	1
FGFR3	Del_19p13.3	0.864	1
FGFR3	Del_19q13.42	0.864	1
GXYLT1	KDM6A	0.864	1
GXYLT1	NF2	0.864	1
GXYLT1	PCF11	0.864	1
GXYLT1	SMARCA4	0.864	1
GXYLT1	Del_2q37.3	0.864	1
KIAA0922	Del_19p13.3	0.864	1
KIAA0922	Del_19q13.42	0.864	1
KRAS	Del_19p13.3	0.864	1
KRAS	Del_19q13.42	0.864	1
KRT2	Del_19p13.3	0.864	1
KRT2	Del_19q13.42	0.864	1
KRTAP4-5	Del_19p13.3	0.864	1
KRTAP4-5	Del_19q13.42	0.864	1
PIK3CA	Del_19p13.3	0.864	1
PIK3CA	Del_19q13.42	0.864	1
22q-Del	Del_2p12	0.866	1
22q-Del	Del_5p15.33	0.866	1
AR	ERBB2	0.867	1
AR	PAM	0.867	1
ERBB2	Del_3p22.1	0.867	1
PAM	Del_3p22.1	0.867	1
KDM6A	20q-Amp	0.87	1
TP53	14q-Del	0.87	1
KDM6A	Del_11q22.3	0.871	1
NF2	Del_11q22.3	0.871	1
CCBL2	Del_11q22.3	0.875	1
BCLAF1	NEFH	0.877	1
BCLAF1	PTEN	0.877	1
BCLAF1	SMARCB1	0.877	1
BCLAF1	Del_2p12	0.877	1
BRAF	ZNF814	0.877	1
BRAF	Del_16q24.2	0.877	1
GXYLT1	ZNF814	0.877	1
GXYLT1	Del_16q24.2	0.877	1
NEFH	PTEN	0.877	1
NEFH	SMARCB1	0.877	1
NEFH	Del_2p12	0.877	1
NEFH	Del_2q22.1	0.877	1
NEFH	Del_5p15.33	0.877	1
PTEN	SMARCB1	0.877	1
PTEN	Del_2p12	0.877	1
PTEN	Del_2q22.1	0.877	1
PTEN	Del_5p15.33	0.877	1
SMARCB1	Del_2p12	0.877	1
SMARCB1	Del_2q22.1	0.877	1
SMARCB1	Del_5p15.33	0.877	1
Del_2p12	Del_5p15.33	0.877	1
ATP1B1	FGFR3	0.88	1
ATP1B1	KIAA0922	0.88	1
ATP1B1	KRAS	0.88	1
ATP1B1	KRT2	0.88	1
ATP1B1	KRTAP4-5	0.88	1
ATP1B1	PIK3CA	0.88	1
KIAA0922	TP53	0.88	1
KRAS	TP53	0.88	1
KRT2	TP53	0.88	1
KRTAP4-5	TP53	0.88	1
SMARCB1	Del_14q11.2	0.88	1
Del_2p12	Del_14q11.2	0.88	1
Del_2q22.1	Del_14q11.2	0.88	1
Del_5p15.33	Del_14q11.2	0.88	1
CCBL2	Amp_2q32.1	0.882	1
CCBL2	Del_6q25.3	0.882	1
Amp_5q35.3	Del_22q12.2	0.882	1
CUL3	Del_6q25.3	0.883	1
KDM6A	Del_6q25.3	0.883	1
MET	14q-Del	0.883	1
SMARCA4	Amp_2q32.1	0.883	1
AR	Del_3p22.1	0.884	1
ERBB2	PBRM1	0.886	1
ERBB2	Amp_5q35.3	0.886	1
PAM	PBRM1	0.886	1
PAM	Amp_5q35.3	0.886	1
PAM	20p-Amp	0.887	1
CCBL2	16p-Amp	0.888	1
GXYLT1	16p-Amp	0.888	1
MET	7p-Amp	0.888	1
MET	7q-Amp	0.888	1
CCBL2	SETD2	0.889	1
ALMS1	BRAF	0.89	1
ALMS1	GXYLT1	0.89	1
BCLAF1	20p-Amp	0.89	1
BRAF	Del_19p13.3	0.89	1
BRAF	Del_19q13.42	0.89	1
GXYLT1	Del_19p13.3	0.89	1
GXYLT1	Del_19q13.42	0.89	1
PAM	20q-Amp	0.89	1
22q-Del	Amp_5q35.3	0.89	1
PIK3CA	Del_1p36.31	0.893	1
BCLAF1	20q-Amp	0.894	1
NEFH	Del_9p21.3	0.895	1
NEFH	Del_14q24.2	0.895	1
SETD2	Del_2q37.3	0.895	1
SMARCB1	Del_14q24.2	0.895	1
12p-Amp	Amp_5q35.3	0.895	1
Del_2p12	Del_14q24.2	0.895	1
Del_5p15.33	Del_14q24.2	0.895	1
CCBL2	2q-Amp	0.896	1
CCBL2	Del_11q23.3	0.896	1
CUL3	ERBB2	0.896	1
ERBB2	KDM6A	0.896	1
ERBB2	NF2	0.896	1
ERBB2	PCF11	0.896	1
ERBB2	SMARCA4	0.896	1
ERBB2	Del_2q37.3	0.896	1
GXYLT1	3p-Amp	0.896	1
KDM6A	PAM	0.896	1
NF2	PAM	0.896	1
PAM	PCF11	0.896	1
PAM	SMARCA4	0.896	1
PAM	Del_2q37.3	0.896	1
BCLAF1	FGFR3	0.897	1
BCLAF1	KIAA0922	0.897	1
BCLAF1	KRAS	0.897	1
BCLAF1	KRT2	0.897	1
BCLAF1	KRTAP4-5	0.897	1
CCBL2	16q-Amp	0.897	1
FGFR3	NEFH	0.897	1
FGFR3	PTEN	0.897	1
FGFR3	SMARCB1	0.897	1
FGFR3	Del_2p12	0.897	1
FGFR3	Del_2q22.1	0.897	1
FGFR3	Del_5p15.33	0.897	1
KIAA0922	NEFH	0.897	1
KIAA0922	PTEN	0.897	1
KIAA0922	SMARCB1	0.897	1
KIAA0922	Del_2p12	0.897	1
KIAA0922	Del_2q22.1	0.897	1
KIAA0922	Del_5p15.33	0.897	1
KRAS	NEFH	0.897	1
KRAS	PTEN	0.897	1
KRAS	SMARCB1	0.897	1
KRAS	Del_2p12	0.897	1
KRAS	Del_2q22.1	0.897	1
KRAS	Del_5p15.33	0.897	1
KRT2	NEFH	0.897	1
KRT2	SMARCB1	0.897	1
KRT2	Del_2p12	0.897	1
KRT2	Del_2q22.1	0.897	1
KRT2	Del_5p15.33	0.897	1
KRTAP4-5	NEFH	0.897	1
KRTAP4-5	PTEN	0.897	1
KRTAP4-5	SMARCB1	0.897	1
KRTAP4-5	Del_2p12	0.897	1
KRTAP4-5	Del_2q22.1	0.897	1
KRTAP4-5	Del_5p15.33	0.897	1
NEFH	PIK3CA	0.897	1
PIK3CA	PTEN	0.897	1
PIK3CA	SMARCB1	0.897	1
PIK3CA	Del_2q22.1	0.897	1
PIK3CA	Del_5p15.33	0.897	1
NF2	Del_1p36.31	0.899	1
NEFH	16p-Amp	0.9	1
GXYLT1	16q-Amp	0.901	1
NEFH	14q-Del	0.901	1
SMARCB1	14q-Del	0.901	1
14q-Del	Del_2p12	0.901	1
14q-Del	Del_5p15.33	0.901	1
KRAS	12p-Amp	0.902	1
KRTAP4-5	12p-Amp	0.902	1
AR	17p-Amp	0.903	1
ATP1B1	GXYLT1	0.903	1
BRAF	TP53	0.903	1
GXYLT1	TP53	0.903	1
ZNF814	Amp_2q32.1	0.903	1
CUL3	2q-Amp	0.906	1
ERBB2	Del_16q24.2	0.906	1
NF2	Del_11q23.3	0.906	1
PAM	ZNF814	0.906	1
PAM	Del_16q24.2	0.906	1
SMARCA4	2q-Amp	0.906	1
SMARCA4	Del_11q23.3	0.906	1
12q-Amp	Amp_5q35.3	0.906	1
Del_2q37.3	Del_11q23.3	0.906	1
CUL3	Del_22q12.2	0.907	1
Amp_5q35.3	Del_14q11.2	0.907	1
MET	Del_11q23.3	0.908	1
AR	CCBL2	0.909	1
CCBL2	Del_3p22.1	0.909	1
KRAS	12q-Amp	0.909	1
KRTAP4-5	12q-Amp	0.909	1
ATP1B1	MET	0.91	1
FGFR3	KIAA0922	0.913	1
FGFR3	KRAS	0.913	1
FGFR3	KRT2	0.913	1
FGFR3	KRTAP4-5	0.913	1
FGFR3	PIK3CA	0.913	1
KIAA0922	KRAS	0.913	1
KIAA0922	KRTAP4-5	0.913	1
KIAA0922	PIK3CA	0.913	1
KRAS	KRT2	0.913	1
KRAS	KRTAP4-5	0.913	1
KRAS	PIK3CA	0.913	1
KRT2	KRTAP4-5	0.913	1
KRT2	PIK3CA	0.913	1
CUL3	22q-Del	0.914	1
NEFH	16q-Amp	0.914	1
PBRM1	Del_3p22.1	0.914	1
KRAS	Del_14q11.2	0.915	1
ALMS1	ERBB2	0.916	1
ALMS1	PAM	0.916	1
ERBB2	17q-Amp	0.916	1
ERBB2	Del_19p13.3	0.916	1
ERBB2	Del_19q13.42	0.916	1
PAM	17q-Amp	0.916	1
PAM	Del_19p13.3	0.916	1
PAM	Del_19q13.42	0.916	1
BCLAF1	BRAF	0.917	1
BCLAF1	GXYLT1	0.917	1
BRAF	NEFH	0.917	1
BRAF	PTEN	0.917	1
BRAF	SMARCB1	0.917	1
BRAF	Del_2p12	0.917	1
BRAF	Del_2q22.1	0.917	1
BRAF	Del_5p15.33	0.917	1
GXYLT1	NEFH	0.917	1
GXYLT1	PTEN	0.917	1
GXYLT1	SMARCB1	0.917	1
GXYLT1	Del_2p12	0.917	1
GXYLT1	Del_2q22.1	0.917	1
GXYLT1	Del_5p15.33	0.917	1
ALMS1	Del_6q25.3	0.922	1
ZNF814	2q-Amp	0.922	1
Amp_5q35.3	Del_9p21.3	0.922	1
Amp_5q35.3	Del_14q24.2	0.922	1
Del_6q25.3	Del_19q13.42	0.922	1
CCBL2	PBRM1	0.923	1
CCBL2	Amp_5q35.3	0.923	1
ZNF814	Del_1p36.31	0.924	1
Del_1p36.31	Del_16q24.2	0.924	1
KRAS	Del_14q24.2	0.925	1
NF2	16p-Amp	0.925	1
AR	CUL3	0.927	1
AR	Del_2q37.3	0.927	1
ATP1B1	ERBB2	0.927	1
ATP1B1	PAM	0.927	1
CUL3	Del_14q11.2	0.927	1
ERBB2	TP53	0.927	1
NF2	Del_3p22.1	0.927	1
PAM	TP53	0.927	1
BCLAF1	3q-Amp	0.928	1
PTEN	3q-Amp	0.928	1
AR	12p-Amp	0.929	1
14q-Del	Amp_5q35.3	0.929	1
ALMS1	SETD2	0.93	1
BRAF	FGFR3	0.93	1
BRAF	KIAA0922	0.93	1
BRAF	KRAS	0.93	1
BRAF	KRT2	0.93	1
BRAF	KRTAP4-5	0.93	1
BRAF	PIK3CA	0.93	1
CCBL2	CUL3	0.93	1
CCBL2	KDM6A	0.93	1
CCBL2	NF2	0.93	1
CCBL2	PCF11	0.93	1
CCBL2	SMARCA4	0.93	1
CCBL2	Del_2q37.3	0.93	1
FGFR3	GXYLT1	0.93	1
GXYLT1	KIAA0922	0.93	1
GXYLT1	KRAS	0.93	1
GXYLT1	KRTAP4-5	0.93	1
GXYLT1	PIK3CA	0.93	1
KRAS	14q-Del	0.93	1
ATP1B1	Del_11q22.3	0.932	1
MET	17q-Amp	0.932	1
TP53	Del_11q22.3	0.932	1
ERBB2	17p-Amp	0.935	1
KRTAP4-5	20p-Amp	0.935	1
PAM	17p-Amp	0.935	1
PBRM1	Amp_5q35.3	0.936	1
SETD2	Del_6q25.3	0.936	1
BCLAF1	ERBB2	0.937	1
BCLAF1	PAM	0.937	1
CCBL2	ZNF814	0.937	1
CCBL2	Del_16q24.2	0.937	1
ERBB2	NEFH	0.937	1
ERBB2	PTEN	0.937	1
ERBB2	SMARCB1	0.937	1
ERBB2	Del_2p12	0.937	1
ERBB2	Del_2q22.1	0.937	1
ERBB2	Del_5p15.33	0.937	1
NEFH	PAM	0.937	1
PAM	PTEN	0.937	1
PAM	SMARCB1	0.937	1
PAM	Del_2p12	0.937	1
PAM	Del_2q22.1	0.937	1
PAM	Del_5p15.33	0.937	1
AR	12q-Amp	0.938	1
KRTAP4-5	20q-Amp	0.938	1
NF2	16q-Amp	0.938	1
CUL3	Del_14q24.2	0.939	1
KDM6A	Del_9p21.3	0.939	1
SMARCB1	Del_4q34.3	0.939	1
TP53	Amp_2q32.1	0.939	1
TP53	Del_6q25.3	0.939	1
AR	ZNF814	0.94	1
AR	Del_16q24.2	0.94	1
CCBL2	12p-Amp	0.94	1
ZNF814	Del_3p22.1	0.94	1
20p-Amp	Amp_5q35.3	0.942	1
CCBL2	12q-Amp	0.943	1
PAM	3p-Amp	0.943	1
ALMS1	CCBL2	0.944	1
BRAF	GXYLT1	0.944	1
CCBL2	Del_19p13.3	0.944	1
CCBL2	Del_19q13.42	0.944	1
SETD2	Del_9p21.3	0.944	1
CUL3	14q-Del	0.945	1
ZNF814	Del_14q11.2	0.945	1
ATP1B1	SETD2	0.946	1
SETD2	TP53	0.946	1
20q-Amp	Amp_5q35.3	0.946	1
CUL3	Amp_5q35.3	0.947	1
ERBB2	FGFR3	0.947	1
ERBB2	KIAA0922	0.947	1
ERBB2	KRAS	0.947	1
ERBB2	KRT2	0.947	1
ERBB2	KRTAP4-5	0.947	1
ERBB2	PIK3CA	0.947	1
FGFR3	PAM	0.947	1
KIAA0922	PAM	0.947	1
KRAS	PAM	0.947	1
KRTAP4-5	PAM	0.947	1
NF2	Amp_5q35.3	0.947	1
PAM	PIK3CA	0.947	1
PBRM1	PCF11	0.947	1
PBRM1	Del_2q37.3	0.947	1
MET	Del_14q11.2	0.948	1
Del_2p12	Del_11q22.3	0.95	1
Del_2q22.1	Del_11q22.3	0.95	1
Del_5p15.33	Del_11q22.3	0.95	1
ATP1B1	CCBL2	0.951	1
CCBL2	TP53	0.951	1
ALMS1	AR	0.952	1
ATP1B1	Del_11q23.3	0.952	1
TP53	2q-Amp	0.952	1
TP53	Del_11q23.3	0.952	1
KIAA0922	MET	0.953	1
BCLAF1	Amp_2q32.1	0.955	1
NEFH	Amp_2q32.1	0.955	1
NEFH	Del_6q25.3	0.955	1
SMARCB1	Del_6q25.3	0.955	1
ZNF814	Del_14q24.2	0.955	1
Amp_2q32.1	Del_2p12	0.955	1
Amp_2q32.1	Del_5p15.33	0.955	1
Del_2p12	Del_6q25.3	0.955	1
Del_2q22.1	Del_6q25.3	0.955	1
CCBL2	20p-Amp	0.956	1
KDM6A	Del_2q37.3	0.956	1
NF2	Del_2q37.3	0.956	1
PBRM1	ZNF814	0.956	1
PBRM1	Del_16q24.2	0.956	1
Amp_5q35.3	Del_16q24.2	0.956	1
BCLAF1	3p-Amp	0.957	1
KRT2	Del_4q34.3	0.957	1
KRTAP4-5	Del_4q34.3	0.957	1
PIK3CA	Del_4q34.3	0.957	1
PTEN	3p-Amp	0.957	1
BCLAF1	CCBL2	0.958	1
BRAF	ERBB2	0.958	1
BRAF	PAM	0.958	1
CCBL2	NEFH	0.958	1
CCBL2	PTEN	0.958	1
CCBL2	SMARCB1	0.958	1
CCBL2	20q-Amp	0.958	1
CCBL2	Del_2p12	0.958	1
CCBL2	Del_2q22.1	0.958	1
CCBL2	Del_5p15.33	0.958	1
ERBB2	GXYLT1	0.958	1
GXYLT1	PAM	0.958	1
KRT2	3q-Amp	0.959	1
MET	PBRM1	0.959	1
ZNF814	14q-Del	0.959	1
SETD2	SMARCB1	0.96	1
SETD2	Del_2q22.1	0.96	1
MET	Del_14q24.2	0.961	1
NF2	20p-Amp	0.962	1
TP53	Del_1p36.31	0.962	1
16p-Amp	Amp_5q35.3	0.963	1
CUL3	Del_16q24.2	0.964	1
NEFH	2q-Amp	0.964	1
SMARCA4	ZNF814	0.964	1
2q-Amp	Del_2p12	0.964	1
2q-Amp	Del_2q22.1	0.964	1
Del_2p12	Del_11q23.3	0.964	1
Del_2q22.1	Del_11q23.3	0.964	1
Del_5p15.33	Del_11q23.3	0.964	1
ALMS1	PBRM1	0.965	1
CCBL2	FGFR3	0.965	1
CCBL2	KRT2	0.965	1
CCBL2	KRTAP4-5	0.965	1
CCBL2	PIK3CA	0.965	1
GXYLT1	Amp_7q31.2	0.965	1
KRT2	Del_11q22.3	0.965	1
NF2	20q-Amp	0.965	1
Amp_5q35.3	Del_19q13.42	0.965	1
ALMS1	Del_9p21.3	0.968	1
ERBB2	PAM	0.968	1
MET	17p-Amp	0.968	1
Del_9p21.3	Del_19p13.3	0.968	1
Del_9p21.3	Del_19q13.42	0.968	1
CUL3	MET	0.969	1
FGFR3	Del_6q25.3	0.969	1
GXYLT1	7p-Amp	0.969	1
GXYLT1	7q-Amp	0.969	1
KRT2	Amp_2q32.1	0.969	1
GXYLT1	20p-Amp	0.97	1
ALMS1	KDM6A	0.971	1
ALMS1	NF2	0.971	1
CUL3	Del_19q13.42	0.971	1
GXYLT1	20q-Amp	0.971	1
PAM	Del_14q11.2	0.971	1
PCF11	Del_19p13.3	0.971	1
ZNF814	Del_16q24.2	0.971	1
16q-Amp	Amp_5q35.3	0.971	1
Amp_5q35.3	Del_1p36.31	0.971	1
Del_2q37.3	Del_19p13.3	0.971	1
Del_2q37.3	Del_19q13.42	0.971	1
BRAF	CCBL2	0.972	1
CCBL2	GXYLT1	0.972	1
KIAA0922	SETD2	0.972	1
PIK3CA	SETD2	0.972	1
AR	PTEN	0.973	1
ATP1B1	Amp_5q35.3	0.973	1
PBRM1	TP53	0.973	1
Del_2q37.3	Del_4q34.3	0.973	1
PAM	Del_14q24.2	0.975	1
FGFR3	Del_11q23.3	0.976	1
KRT2	2q-Amp	0.976	1
KRT2	3p-Amp	0.976	1
KRT2	Del_11q23.3	0.976	1
PAM	14q-Del	0.976	1
PBRM1	Del_6q25.3	0.977	1
ZNF814	Del_19q13.42	0.977	1
Amp_2q32.1	Amp_5q35.3	0.977	1
Del_16q24.2	Del_19q13.42	0.977	1
CUL3	TP53	0.978	1
TP53	Del_2q37.3	0.978	1
CCBL2	ERBB2	0.979	1
CCBL2	PAM	0.979	1
SMARCB1	Del_22q12.2	0.979	1
Del_2q22.1	Del_22q12.2	0.979	1
Del_5p15.33	Del_22q12.2	0.979	1
CUL3	Del_1p36.31	0.98	1
SMARCB1	22q-Del	0.98	1
22q-Del	Del_2q22.1	0.98	1
Del_2q37.3	Del_11q22.3	0.98	1
Del_4q34.3	Del_16q24.2	0.98	1
GXYLT1	Amp_2q32.1	0.981	1
PBRM1	SMARCB1	0.981	1
PBRM1	Del_2q22.1	0.981	1
Amp_5q35.3	Del_2q22.1	0.981	1
AR	KIAA0922	0.982	1
AR	KRAS	0.982	1
AR	PIK3CA	0.982	1
PIK3CA	Del_3p22.1	0.982	1
TP53	Del_16q24.2	0.982	1
CUL3	Amp_2q32.1	0.983	1
PTEN	16p-Amp	0.983	1
SMARCA4	12p-Amp	0.983	1
Amp_2q32.1	Del_2q37.3	0.983	1
Del_2q37.3	Del_6q25.3	0.983	1
BCLAF1	PCF11	0.984	1
BCLAF1	Del_2q37.3	0.984	1
CUL3	Del_5p15.33	0.984	1
KDM6A	Del_5p15.33	0.984	1
KRT2	17q-Amp	0.984	1
NEFH	NF2	0.984	1
NEFH	SMARCA4	0.984	1
NEFH	Del_14q11.2	0.984	1
NF2	SMARCB1	0.984	1
PCF11	SMARCB1	0.984	1
2q-Amp	Amp_5q35.3	0.984	1
Del_2q37.3	Del_5p15.33	0.984	1
GXYLT1	2q-Amp	0.985	1
KRT2	Amp_7q31.2	0.985	1
MET	PAM	0.985	1
NF2	SETD2	0.986	1
PAM	12p-Amp	0.986	1
PTEN	16q-Amp	0.986	1
SMARCA4	12q-Amp	0.986	1
BCLAF1	Del_16q24.2	0.987	1
KRT2	7p-Amp	0.987	1
KRT2	7q-Amp	0.987	1
PAM	12q-Amp	0.987	1
PBRM1	PIK3CA	0.987	1
PIK3CA	Amp_5q35.3	0.987	1
SMARCB1	Del_16q24.2	0.987	1
Del_2p12	Del_9p21.3	0.987	1
Del_2q22.1	Del_14q24.2	0.987	1
Del_5p15.33	Del_16q24.2	0.987	1
Del_6q25.3	Del_16q24.2	0.987	1
14q-Del	Del_2q22.1	0.988	1
Del_16q24.2	Del_22q12.2	0.988	1
CUL3	KRTAP4-5	0.989	1
CUL3	PIK3CA	0.989	1
ERBB2	Del_11q22.3	0.989	1
FGFR3	Del_2q37.3	0.989	1
PCF11	PIK3CA	0.989	1
22q-Del	Del_16q24.2	0.989	1
CCBL2	Del_14q11.2	0.99	1
KRT2	17p-Amp	0.99	1
NEFH	3q-Amp	0.99	1
NF2	Del_9p21.3	0.99	1
PAM	Amp_2q32.1	0.99	1
SETD2	ZNF814	0.99	1
SETD2	Del_16q24.2	0.99	1
SMARCB1	Del_19q13.42	0.99	1
Amp_5q35.3	Del_3p22.1	0.99	1
Del_2p12	Del_19q13.42	0.99	1
Del_2q22.1	Del_19p13.3	0.99	1
Del_2q22.1	Del_19q13.42	0.99	1
Del_2q37.3	Del_9p21.3	0.99	1
Del_11q22.3	Del_19q13.42	0.99	1
CCBL2	Del_14q24.2	0.991	1
KRT2	Del_16q24.2	0.991	1
KRTAP4-5	Del_16q24.2	0.991	1
TP53	Del_4q34.3	0.991	1
ZNF814	Del_11q23.3	0.991	1
AR	PCF11	0.992	1
BCLAF1	TP53	0.992	1
CCBL2	14q-Del	0.992	1
CUL3	Del_3p22.1	0.992	1
GXYLT1	Amp_5q35.3	0.992	1
PAM	2q-Amp	0.992	1
SMARCA4	3p-Amp	0.992	1
TP53	Del_2q22.1	0.992	1
Del_14q11.2	Del_16q24.2	0.992	1
ALMS1	FGFR3	0.993	1
ALMS1	PIK3CA	0.993	1
BRAF	PCF11	0.993	1
FGFR3	Del_9p21.3	0.993	1
SETD2	Del_19q13.42	0.993	1
SMARCA4	20p-Amp	0.993	1
SMARCA4	20q-Amp	0.993	1
BCLAF1	Del_2q22.1	0.994	1
BCLAF1	Del_5p15.33	0.994	1
Del_2q22.1	Del_5p15.33	0.994	1
Del_3p22.1	Del_16q24.2	0.994	1
Del_11q22.3	Del_14q11.2	0.994	1
Del_11q23.3	Del_19q13.42	0.994	1
Del_14q24.2	Del_16q24.2	0.994	1
FGFR3	TP53	0.995	1
NEFH	3p-Amp	0.995	1
PAM	3q-Amp	0.995	1
PBRM1	Del_1p36.31	0.995	1
PBRM1	Del_4q34.3	0.995	1
14q-Del	Del_16q24.2	0.995	1
Amp_5q35.3	Del_4q34.3	0.995	1
Del_2q22.1	Del_4q34.3	0.995	1
Del_3p22.1	Del_6q25.3	0.995	1
Del_14q11.2	Del_19p13.3	0.995	1
ATP1B1	Del_1p36.31	0.996	1
ATP1B1	Del_22q12.2	0.996	1
KRT2	PTEN	0.996	1
PBRM1	Del_22q12.2	0.996	1
PIK3CA	Del_2p12	0.996	1
SETD2	Del_3p22.1	0.996	1
Del_11q22.3	Del_14q24.2	0.996	1
ATP1B1	BRAF	0.997	1
ATP1B1	22q-Del	0.997	1
CUL3	PAM	0.997	1
CUL3	Del_2q37.3	0.997	1
ERBB2	ZNF814	0.997	1
GXYLT1	12p-Amp	0.997	1
GXYLT1	12q-Amp	0.997	1
KIAA0922	KRT2	0.997	1
KRTAP4-5	PIK3CA	0.997	1
PBRM1	22q-Del	0.997	1
PBRM1	Del_11q22.3	0.997	1
SETD2	Del_2p12	0.997	1
SETD2	Del_4q34.3	0.997	1
SMARCA4	16p-Amp	0.997	1
SMARCA4	17q-Amp	0.997	1
SMARCA4	3q-Amp	0.997	1
20p-Amp	Amp_2q32.1	0.997	1
14q-Del	Del_11q22.3	0.997	1
Amp_2q32.1	Del_2q22.1	0.997	1
ATP1B1	14q-Del	0.998	1
ATP1B1	Del_14q24.2	0.998	1
FGFR3	Del_11q22.3	0.998	1
GXYLT1	KRT2	0.998	1
NF2	Del_6q25.3	0.998	1
SETD2	Amp_5q35.3	0.998	1
SMARCA4	16q-Amp	0.998	1
SMARCA4	17p-Amp	0.998	1
TP53	Del_3p22.1	0.998	1
20q-Amp	Amp_2q32.1	0.998	1
22q-Del	Del_2q37.3	0.998	1
Del_2q37.3	Del_22q12.2	0.998	1
Del_11q23.3	Del_14q11.2	0.998	1
ATP1B1	PCF11	0.999	1
ATP1B1	Del_4q34.3	0.999	1
ATP1B1	Del_19q13.42	0.999	1
CUL3	Del_2p12	0.999	1
KRT2	PAM	0.999	1
PBRM1	Del_2p12	0.999	1
PBRM1	Del_11q23.3	0.999	1
SETD2	Del_1p36.31	0.999	1
TP53	Amp_5q35.3	0.999	1
ZNF814	Del_11q22.3	0.999	1
ZNF814	Del_19p13.3	0.999	1
20p-Amp	2q-Amp	0.999	1
20q-Amp	2q-Amp	0.999	1
14q-Del	Del_11q23.3	0.999	1
Amp_5q35.3	Del_2p12	0.999	1
Del_1p36.31	Del_19p13.3	0.999	1
Del_2p12	Del_2q37.3	0.999	1
Del_2p12	Del_3p22.1	0.999	1
Del_2q22.1	Del_3p22.1	0.999	1
Del_2q22.1	Del_9p21.3	0.999	1
Del_2q37.3	Del_3p22.1	0.999	1
Del_3p22.1	Del_14q11.2	0.999	1
Del_4q34.3	Del_11q22.3	0.999	1
Del_4q34.3	Del_19p13.3	0.999	1
Del_4q34.3	Del_19q13.42	0.999	1
Del_5p15.33	Del_9p21.3	0.999	1
Del_6q25.3	Del_11q23.3	0.999	1
Del_6q25.3	Del_14q11.2	0.999	1
Del_6q25.3	Del_19p13.3	0.999	1
Del_9p21.3	Del_16q24.2	0.999	1
Del_11q23.3	Del_14q24.2	0.999	1
Del_16q24.2	Del_19p13.3	0.999	1
ATP1B1	Del_14q11.2	1	1
BCLAF1	PIK3CA	1	1
CCBL2	KIAA0922	1	1
CCBL2	KRAS	1	1
FGFR3	KDM6A	1	1
GXYLT1	17p-Amp	1	1
GXYLT1	17q-Amp	1	1
NF2	22q-Del	1	1
NF2	Del_22q12.2	1	1
PAM	16p-Amp	1	1
PAM	16q-Amp	1	1
PBRM1	SETD2	1	1
PBRM1	Del_19p13.3	1	1
PIK3CA	TP53	1	1
PIK3CA	Del_16q24.2	1	1
SETD2	22q-Del	1	1
SETD2	Del_11q22.3	1	1
SETD2	Del_11q23.3	1	1
SETD2	Del_19p13.3	1	1
SETD2	Del_22q12.2	1	1
SMARCA4	7p-Amp	1	1
SMARCA4	7q-Amp	1	1
SMARCA4	Amp_7q31.2	1	1
SMARCB1	Del_19p13.3	1	1
TP53	Del_2p12	1	1
12p-Amp	12q-Amp	1	1
12p-Amp	16p-Amp	1	1
12p-Amp	16q-Amp	1	1
12p-Amp	17p-Amp	1	1
12p-Amp	17q-Amp	1	1
12p-Amp	20p-Amp	1	1
12p-Amp	20q-Amp	1	1
12p-Amp	2q-Amp	1	1
12p-Amp	3p-Amp	1	1
12p-Amp	3q-Amp	1	1
12p-Amp	7p-Amp	1	1
12p-Amp	7q-Amp	1	1
12p-Amp	Amp_2q32.1	1	1
12p-Amp	Amp_7q31.2	1	1
12q-Amp	16p-Amp	1	1
12q-Amp	16q-Amp	1	1
12q-Amp	17p-Amp	1	1
12q-Amp	17q-Amp	1	1
12q-Amp	20p-Amp	1	1
12q-Amp	20q-Amp	1	1
12q-Amp	2q-Amp	1	1
12q-Amp	3p-Amp	1	1
12q-Amp	3q-Amp	1	1
12q-Amp	7p-Amp	1	1
12q-Amp	7q-Amp	1	1
12q-Amp	Amp_2q32.1	1	1
12q-Amp	Amp_7q31.2	1	1
16p-Amp	16q-Amp	1	1
16p-Amp	17p-Amp	1	1
16p-Amp	17q-Amp	1	1
16p-Amp	20p-Amp	1	1
16p-Amp	20q-Amp	1	1
16p-Amp	2q-Amp	1	1
16p-Amp	3p-Amp	1	1
16p-Amp	3q-Amp	1	1
16p-Amp	7p-Amp	1	1
16p-Amp	7q-Amp	1	1
16p-Amp	Amp_2q32.1	1	1
16p-Amp	Amp_7q31.2	1	1
16q-Amp	17p-Amp	1	1
16q-Amp	17q-Amp	1	1
16q-Amp	20p-Amp	1	1
16q-Amp	20q-Amp	1	1
16q-Amp	2q-Amp	1	1
16q-Amp	3p-Amp	1	1
16q-Amp	3q-Amp	1	1
16q-Amp	7p-Amp	1	1
16q-Amp	7q-Amp	1	1
16q-Amp	Amp_2q32.1	1	1
16q-Amp	Amp_7q31.2	1	1
17p-Amp	17q-Amp	1	1
17p-Amp	20p-Amp	1	1
17p-Amp	20q-Amp	1	1
17p-Amp	2q-Amp	1	1
17p-Amp	3p-Amp	1	1
17p-Amp	3q-Amp	1	1
17p-Amp	7p-Amp	1	1
17p-Amp	7q-Amp	1	1
17p-Amp	Amp_2q32.1	1	1
17p-Amp	Amp_7q31.2	1	1
17q-Amp	20p-Amp	1	1
17q-Amp	20q-Amp	1	1
17q-Amp	2q-Amp	1	1
17q-Amp	3p-Amp	1	1
17q-Amp	3q-Amp	1	1
17q-Amp	7p-Amp	1	1
17q-Amp	7q-Amp	1	1
17q-Amp	Amp_2q32.1	1	1
17q-Amp	Amp_7q31.2	1	1
20p-Amp	20q-Amp	1	1
20p-Amp	3p-Amp	1	1
20p-Amp	3q-Amp	1	1
20p-Amp	7p-Amp	1	1
20p-Amp	7q-Amp	1	1
20p-Amp	Amp_7q31.2	1	1
20q-Amp	3p-Amp	1	1
20q-Amp	3q-Amp	1	1
20q-Amp	7p-Amp	1	1
20q-Amp	7q-Amp	1	1
20q-Amp	Amp_7q31.2	1	1
2q-Amp	3p-Amp	1	1
2q-Amp	3q-Amp	1	1
2q-Amp	7p-Amp	1	1
2q-Amp	7q-Amp	1	1
2q-Amp	Amp_2q32.1	1	1
2q-Amp	Amp_7q31.2	1	1
3p-Amp	3q-Amp	1	1
3p-Amp	7p-Amp	1	1
3p-Amp	7q-Amp	1	1
3p-Amp	Amp_2q32.1	1	1
3p-Amp	Amp_7q31.2	1	1
3q-Amp	7p-Amp	1	1
3q-Amp	7q-Amp	1	1
3q-Amp	Amp_2q32.1	1	1
3q-Amp	Amp_7q31.2	1	1
7p-Amp	7q-Amp	1	1
7p-Amp	Amp_2q32.1	1	1
7p-Amp	Amp_7q31.2	1	1
7q-Amp	Amp_2q32.1	1	1
7q-Amp	Amp_7q31.2	1	1
14q-Del	22q-Del	1	1
14q-Del	Del_1p36.31	1	1
14q-Del	Del_3p22.1	1	1
14q-Del	Del_4q34.3	1	1
14q-Del	Del_6q25.3	1	1
14q-Del	Del_9p21.3	1	1
14q-Del	Del_14q11.2	1	1
14q-Del	Del_14q24.2	1	1
14q-Del	Del_19p13.3	1	1
14q-Del	Del_19q13.42	1	1
14q-Del	Del_22q12.2	1	1
22q-Del	Del_1p36.31	1	1
22q-Del	Del_3p22.1	1	1
22q-Del	Del_4q34.3	1	1
22q-Del	Del_6q25.3	1	1
22q-Del	Del_9p21.3	1	1
22q-Del	Del_11q22.3	1	1
22q-Del	Del_11q23.3	1	1
22q-Del	Del_14q11.2	1	1
22q-Del	Del_14q24.2	1	1
22q-Del	Del_19p13.3	1	1
22q-Del	Del_19q13.42	1	1
22q-Del	Del_22q12.2	1	1
Amp_2q32.1	Amp_7q31.2	1	1
Del_1p36.31	Del_2p12	1	1
Del_1p36.31	Del_2q22.1	1	1
Del_1p36.31	Del_2q37.3	1	1
Del_1p36.31	Del_3p22.1	1	1
Del_1p36.31	Del_4q34.3	1	1
Del_1p36.31	Del_6q25.3	1	1
Del_1p36.31	Del_9p21.3	1	1
Del_1p36.31	Del_11q22.3	1	1
Del_1p36.31	Del_11q23.3	1	1
Del_1p36.31	Del_14q11.2	1	1
Del_1p36.31	Del_14q24.2	1	1
Del_1p36.31	Del_19q13.42	1	1
Del_1p36.31	Del_22q12.2	1	1
Del_2p12	Del_2q22.1	1	1
Del_2p12	Del_4q34.3	1	1
Del_2q22.1	Del_2q37.3	1	1
Del_3p22.1	Del_4q34.3	1	1
Del_3p22.1	Del_9p21.3	1	1
Del_3p22.1	Del_11q22.3	1	1
Del_3p22.1	Del_11q23.3	1	1
Del_3p22.1	Del_14q24.2	1	1
Del_3p22.1	Del_19p13.3	1	1
Del_3p22.1	Del_19q13.42	1	1
Del_3p22.1	Del_22q12.2	1	1
Del_4q34.3	Del_6q25.3	1	1
Del_4q34.3	Del_9p21.3	1	1
Del_4q34.3	Del_11q23.3	1	1
Del_4q34.3	Del_14q11.2	1	1
Del_4q34.3	Del_14q24.2	1	1
Del_4q34.3	Del_22q12.2	1	1
Del_5p15.33	Del_6q25.3	1	1
Del_6q25.3	Del_9p21.3	1	1
Del_6q25.3	Del_11q22.3	1	1
Del_6q25.3	Del_14q24.2	1	1
Del_6q25.3	Del_22q12.2	1	1
Del_9p21.3	Del_11q22.3	1	1
Del_9p21.3	Del_11q23.3	1	1
Del_9p21.3	Del_14q11.2	1	1
Del_9p21.3	Del_14q24.2	1	1
Del_9p21.3	Del_22q12.2	1	1
Del_11q22.3	Del_11q23.3	1	1
Del_11q22.3	Del_16q24.2	1	1
Del_11q22.3	Del_19p13.3	1	1
Del_11q22.3	Del_22q12.2	1	1
Del_11q23.3	Del_16q24.2	1	1
Del_11q23.3	Del_19p13.3	1	1
Del_11q23.3	Del_22q12.2	1	1
Del_14q11.2	Del_14q24.2	1	1
Del_14q11.2	Del_19q13.42	1	1
Del_14q11.2	Del_22q12.2	1	1
Del_14q24.2	Del_19p13.3	1	1
Del_14q24.2	Del_19q13.42	1	1
Del_14q24.2	Del_22q12.2	1	1
Del_19p13.3	Del_19q13.42	1	1
Del_19p13.3	Del_22q12.2	1	1
Del_19q13.42	Del_22q12.2	1	1
7p-Amp	Del_1p36.31	1.34e-05	1
7q-Amp	Del_1p36.31	1.34e-05	1
17p-Amp	14q-Del	1.35e-05	1
17p-Amp	Del_1p36.31	2.7e-07	1
17p-Amp	Del_9p21.3	3.45e-07	1
14q-Del	Amp_7q31.2	3.82e-05	1
7p-Amp	Del_14q24.2	4.01e-05	1
7q-Amp	Del_14q24.2	4.01e-05	1
Amp_7q31.2	Del_1p36.31	4.66e-05	1
17q-Amp	Del_1p36.31	5.34e-06	1
7p-Amp	14q-Del	6.16e-06	1
7q-Amp	14q-Del	6.16e-06	1
17p-Amp	Del_14q24.2	7.8e-06	1
17p-Amp	22q-Del	8.68e-05	1
