gene1	gene2	pval	qval
BCLAF1	PIK3CA	0.00368	1
PIK3CA	TP53	0.00511	1
FGFR3	KDM6A	0.0107	1
ATP1B1	PCF11	0.0262	1
CCBL2	KIAA0922	0.0352	1
CCBL2	KRAS	0.0352	1
KRT2	PAM	0.0524	1
GXYLT1	KRT2	0.0694	1
AR	PCF11	0.0853	1
SETD2	ZNF814	0.0861	1
KIAA0922	KRT2	0.0862	1
KRTAP4-5	PIK3CA	0.0862	1
ERBB2	ZNF814	0.093	1
ATP1B1	BRAF	0.0961	1
CUL3	PAM	0.103	1
NF2	SETD2	0.104	1
FGFR3	TP53	0.119	1
KRT2	PTEN	0.119	1
ALMS1	FGFR3	0.135	1
ALMS1	PIK3CA	0.135	1
BCLAF1	TP53	0.141	1
BRAF	PCF11	0.148	1
CUL3	MET	0.165	1
CUL3	KRTAP4-5	0.166	1
CUL3	PIK3CA	0.166	1
PBRM1	PIK3CA	0.182	1
PCF11	PIK3CA	0.182	1
MET	PBRM1	0.193	1
NEFH	NF2	0.196	1
NEFH	SMARCA4	0.196	1
NF2	SMARCB1	0.196	1
MET	PAM	0.208	1
AR	KIAA0922	0.212	1
AR	KRAS	0.212	1
AR	PIK3CA	0.212	1
BCLAF1	PCF11	0.214	1
PBRM1	SMARCB1	0.214	1
PCF11	SMARCB1	0.214	1
CUL3	TP53	0.225	1
PBRM1	TP53	0.245	1
PCF11	PTEN	0.245	1
ALMS1	KDM6A	0.254	1
ALMS1	NF2	0.254	1
KIAA0922	SETD2	0.255	1
PIK3CA	SETD2	0.255	1
ALMS1	PBRM1	0.276	1
SMARCA4	ZNF814	0.281	1
AR	PTEN	0.284	1
SETD2	SMARCB1	0.298	1
PBRM1	ZNF814	0.305	1
ALMS1	AR	0.318	1
KIAA0922	MET	0.323	1
ATP1B1	SETD2	0.339	1
SETD2	TP53	0.339	1
AR	ZNF814	0.35	1
PBRM1	PCF11	0.36	1
ALMS1	SETD2	0.377	1
AR	CUL3	0.381	1
ATP1B1	MET	0.422	1
AR	SETD2	0.54	1
ALMS1	ATP1B1	1	1
ALMS1	BCLAF1	1	1
ALMS1	BRAF	1	1
ALMS1	CCBL2	1	1
ALMS1	CUL3	1	1
ALMS1	ERBB2	1	1
ALMS1	GXYLT1	1	1
ALMS1	KIAA0922	1	1
ALMS1	KRAS	1	1
ALMS1	KRT2	1	1
ALMS1	KRTAP4-5	1	1
ALMS1	MET	1	1
ALMS1	NEFH	1	1
ALMS1	PAM	1	1
ALMS1	PCF11	1	1
ALMS1	PTEN	1	1
ALMS1	SMARCA4	1	1
ALMS1	SMARCB1	1	1
ALMS1	TP53	1	1
ALMS1	ZNF814	1	1
AR	ATP1B1	1	1
AR	BCLAF1	1	1
AR	BRAF	1	1
AR	CCBL2	1	1
AR	ERBB2	1	1
AR	FGFR3	1	1
AR	GXYLT1	1	1
AR	KDM6A	1	1
AR	KRT2	1	1
AR	KRTAP4-5	1	1
AR	MET	1	1
AR	NEFH	1	1
AR	NF2	1	1
AR	PAM	1	1
AR	PBRM1	1	1
AR	SMARCA4	1	1
AR	SMARCB1	1	1
AR	TP53	1	1
ATP1B1	BCLAF1	1	1
ATP1B1	CCBL2	1	1
ATP1B1	CUL3	1	1
ATP1B1	ERBB2	1	1
ATP1B1	FGFR3	1	1
ATP1B1	GXYLT1	1	1
ATP1B1	KDM6A	1	1
ATP1B1	KIAA0922	1	1
ATP1B1	KRAS	1	1
ATP1B1	KRT2	1	1
ATP1B1	KRTAP4-5	1	1
ATP1B1	NEFH	1	1
ATP1B1	NF2	1	1
ATP1B1	PAM	1	1
ATP1B1	PBRM1	1	1
ATP1B1	PIK3CA	1	1
ATP1B1	PTEN	1	1
ATP1B1	SMARCA4	1	1
ATP1B1	SMARCB1	1	1
ATP1B1	TP53	1	1
ATP1B1	ZNF814	1	1
BCLAF1	BRAF	1	1
BCLAF1	CCBL2	1	1
BCLAF1	CUL3	1	1
BCLAF1	ERBB2	1	1
BCLAF1	FGFR3	1	1
BCLAF1	GXYLT1	1	1
BCLAF1	KDM6A	1	1
BCLAF1	KIAA0922	1	1
BCLAF1	KRAS	1	1
BCLAF1	KRT2	1	1
BCLAF1	KRTAP4-5	1	1
BCLAF1	MET	1	1
BCLAF1	NEFH	1	1
BCLAF1	NF2	1	1
BCLAF1	PAM	1	1
BCLAF1	PBRM1	1	1
BCLAF1	PTEN	1	1
BCLAF1	SETD2	1	1
BCLAF1	SMARCA4	1	1
BCLAF1	SMARCB1	1	1
BCLAF1	ZNF814	1	1
BRAF	CCBL2	1	1
BRAF	CUL3	1	1
BRAF	ERBB2	1	1
BRAF	FGFR3	1	1
BRAF	GXYLT1	1	1
BRAF	KDM6A	1	1
BRAF	KIAA0922	1	1
BRAF	KRAS	1	1
BRAF	KRT2	1	1
BRAF	KRTAP4-5	1	1
BRAF	MET	1	1
BRAF	NEFH	1	1
BRAF	NF2	1	1
BRAF	PAM	1	1
BRAF	PBRM1	1	1
BRAF	PIK3CA	1	1
BRAF	PTEN	1	1
BRAF	SETD2	1	1
BRAF	SMARCA4	1	1
BRAF	SMARCB1	1	1
BRAF	TP53	1	1
BRAF	ZNF814	1	1
CCBL2	CUL3	1	1
CCBL2	ERBB2	1	1
CCBL2	FGFR3	1	1
CCBL2	GXYLT1	1	1
CCBL2	KDM6A	1	1
CCBL2	KRT2	1	1
CCBL2	KRTAP4-5	1	1
CCBL2	MET	1	1
CCBL2	NEFH	1	1
CCBL2	NF2	1	1
CCBL2	PAM	1	1
CCBL2	PBRM1	1	1
CCBL2	PCF11	1	1
CCBL2	PIK3CA	1	1
CCBL2	PTEN	1	1
CCBL2	SETD2	1	1
CCBL2	SMARCA4	1	1
CCBL2	SMARCB1	1	1
CCBL2	TP53	1	1
CCBL2	ZNF814	1	1
CUL3	ERBB2	1	1
CUL3	FGFR3	1	1
CUL3	GXYLT1	1	1
CUL3	KDM6A	1	1
CUL3	KIAA0922	1	1
CUL3	KRAS	1	1
CUL3	KRT2	1	1
CUL3	NEFH	1	1
CUL3	NF2	1	1
CUL3	PBRM1	1	1
CUL3	PCF11	1	1
CUL3	PTEN	1	1
CUL3	SETD2	1	1
CUL3	SMARCA4	1	1
CUL3	SMARCB1	1	1
CUL3	ZNF814	1	1
ERBB2	FGFR3	1	1
ERBB2	GXYLT1	1	1
ERBB2	KDM6A	1	1
ERBB2	KIAA0922	1	1
ERBB2	KRAS	1	1
ERBB2	KRT2	1	1
ERBB2	KRTAP4-5	1	1
ERBB2	MET	1	1
ERBB2	NEFH	1	1
ERBB2	NF2	1	1
ERBB2	PAM	1	1
ERBB2	PBRM1	1	1
ERBB2	PCF11	1	1
ERBB2	PIK3CA	1	1
ERBB2	PTEN	1	1
ERBB2	SETD2	1	1
ERBB2	SMARCA4	1	1
ERBB2	SMARCB1	1	1
ERBB2	TP53	1	1
FGFR3	GXYLT1	1	1
FGFR3	KIAA0922	1	1
FGFR3	KRAS	1	1
FGFR3	KRT2	1	1
FGFR3	KRTAP4-5	1	1
FGFR3	MET	1	1
FGFR3	NEFH	1	1
FGFR3	NF2	1	1
FGFR3	PAM	1	1
FGFR3	PBRM1	1	1
FGFR3	PCF11	1	1
FGFR3	PIK3CA	1	1
FGFR3	PTEN	1	1
FGFR3	SETD2	1	1
FGFR3	SMARCA4	1	1
FGFR3	SMARCB1	1	1
FGFR3	ZNF814	1	1
GXYLT1	KDM6A	1	1
GXYLT1	KIAA0922	1	1
GXYLT1	KRAS	1	1
GXYLT1	KRTAP4-5	1	1
GXYLT1	MET	1	1
GXYLT1	NEFH	1	1
GXYLT1	NF2	1	1
GXYLT1	PAM	1	1
GXYLT1	PBRM1	1	1
GXYLT1	PCF11	1	1
GXYLT1	PIK3CA	1	1
GXYLT1	PTEN	1	1
GXYLT1	SETD2	1	1
GXYLT1	SMARCA4	1	1
GXYLT1	SMARCB1	1	1
GXYLT1	TP53	1	1
GXYLT1	ZNF814	1	1
KDM6A	KIAA0922	1	1
KDM6A	KRAS	1	1
KDM6A	KRT2	1	1
KDM6A	KRTAP4-5	1	1
KDM6A	MET	1	1
KDM6A	NEFH	1	1
KDM6A	NF2	1	1
KDM6A	PAM	1	1
KDM6A	PBRM1	1	1
KDM6A	PCF11	1	1
KDM6A	PIK3CA	1	1
KDM6A	PTEN	1	1
KDM6A	SETD2	1	1
KDM6A	SMARCA4	1	1
KDM6A	SMARCB1	1	1
KDM6A	TP53	1	1
KDM6A	ZNF814	1	1
KIAA0922	KRAS	1	1
KIAA0922	KRTAP4-5	1	1
KIAA0922	NEFH	1	1
KIAA0922	NF2	1	1
KIAA0922	PAM	1	1
KIAA0922	PBRM1	1	1
KIAA0922	PCF11	1	1
KIAA0922	PIK3CA	1	1
KIAA0922	PTEN	1	1
KIAA0922	SMARCA4	1	1
KIAA0922	SMARCB1	1	1
KIAA0922	TP53	1	1
KIAA0922	ZNF814	1	1
KRAS	KRT2	1	1
KRAS	KRTAP4-5	1	1
KRAS	MET	1	1
KRAS	NEFH	1	1
KRAS	NF2	1	1
KRAS	PAM	1	1
KRAS	PBRM1	1	1
KRAS	PCF11	1	1
KRAS	PIK3CA	1	1
KRAS	PTEN	1	1
KRAS	SETD2	1	1
KRAS	SMARCA4	1	1
KRAS	SMARCB1	1	1
KRAS	TP53	1	1
KRAS	ZNF814	1	1
KRT2	KRTAP4-5	1	1
KRT2	MET	1	1
KRT2	NEFH	1	1
KRT2	NF2	1	1
KRT2	PBRM1	1	1
KRT2	PCF11	1	1
KRT2	PIK3CA	1	1
KRT2	SETD2	1	1
KRT2	SMARCA4	1	1
KRT2	SMARCB1	1	1
KRT2	TP53	1	1
KRT2	ZNF814	1	1
KRTAP4-5	MET	1	1
KRTAP4-5	NEFH	1	1
KRTAP4-5	NF2	1	1
KRTAP4-5	PAM	1	1
KRTAP4-5	PBRM1	1	1
KRTAP4-5	PCF11	1	1
KRTAP4-5	PTEN	1	1
KRTAP4-5	SETD2	1	1
KRTAP4-5	SMARCA4	1	1
KRTAP4-5	SMARCB1	1	1
KRTAP4-5	TP53	1	1
KRTAP4-5	ZNF814	1	1
MET	NEFH	1	1
MET	NF2	1	1
MET	PCF11	1	1
MET	PIK3CA	1	1
MET	PTEN	1	1
MET	SETD2	1	1
MET	SMARCA4	1	1
MET	SMARCB1	1	1
MET	TP53	1	1
MET	ZNF814	1	1
NEFH	PAM	1	1
NEFH	PBRM1	1	1
NEFH	PCF11	1	1
NEFH	PIK3CA	1	1
NEFH	PTEN	1	1
NEFH	SETD2	1	1
NEFH	SMARCB1	1	1
NEFH	TP53	1	1
NEFH	ZNF814	1	1
NF2	PAM	1	1
NF2	PBRM1	1	1
NF2	PCF11	1	1
NF2	PIK3CA	1	1
NF2	PTEN	1	1
NF2	SMARCA4	1	1
NF2	TP53	1	1
NF2	ZNF814	1	1
PAM	PBRM1	1	1
PAM	PCF11	1	1
PAM	PIK3CA	1	1
PAM	PTEN	1	1
PAM	SETD2	1	1
PAM	SMARCA4	1	1
PAM	SMARCB1	1	1
PAM	TP53	1	1
PAM	ZNF814	1	1
PBRM1	PTEN	1	1
PBRM1	SMARCA4	1	1
PCF11	SETD2	1	1
PCF11	SMARCA4	1	1
PCF11	TP53	1	1
PCF11	ZNF814	1	1
PIK3CA	PTEN	1	1
PIK3CA	SMARCA4	1	1
PIK3CA	SMARCB1	1	1
PIK3CA	ZNF814	1	1
PTEN	SETD2	1	1
PTEN	SMARCA4	1	1
PTEN	SMARCB1	1	1
PTEN	TP53	1	1
PTEN	ZNF814	1	1
SETD2	SMARCA4	1	1
SMARCA4	SMARCB1	1	1
SMARCA4	TP53	1	1
SMARCB1	TP53	1	1
SMARCB1	ZNF814	1	1
TP53	ZNF814	1	1
PBRM1	SETD2	1.29e-07	1
