[1] "ofn"       "-oTLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/22553887/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/22813362/transformed.cor.cli.txt"

nPatients in clinical file=516, in cluster file=516, common to both=516
[1]  92 516
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
           401            115 
  IDH1 MUTATED IDH1 WILD-TYPE 
           401            115 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           251            265 
  TP53 MUTATED TP53 WILD-TYPE 
           251            265 
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
           198            318 
  ATRX MUTATED ATRX WILD-TYPE 
           198            318 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
          108           408 
  CIC MUTATED CIC WILD-TYPE 
          108           408 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              474 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              474 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            496 
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            496 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              22              494 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              22              494 
[1] "FUBP1 MUTATION ANALYSIS"
[1] 3
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             469 
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             469 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           33           483 
  NF1 MUTATED NF1 WILD-TYPE 
           33           483 
[1] "TCF12 MUTATION ANALYSIS"
[1] 3
  TCF12 MUTATED TCF12 WILD-TYPE 
             15             501 
  TCF12 MUTATED TCF12 WILD-TYPE 
             15             501 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            24            492 
  PTEN MUTATED PTEN WILD-TYPE 
            24            492 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              20              496 
  ARID1A MUTATED ARID1A WILD-TYPE 
              20              496 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            35            481 
  EGFR MUTATED EGFR WILD-TYPE 
            35            481 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               8              508 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               8              508 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              505 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              505 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              44              472 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              44              472 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
             10             506 
  STK19 MUTATED STK19 WILD-TYPE 
             10             506 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               26               490 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               26               490 
[1] "NIPBL MUTATION ANALYSIS"
[1] 3
  NIPBL MUTATED NIPBL WILD-TYPE 
             18             498 
  NIPBL MUTATED NIPBL WILD-TYPE 
             18             498 
[1] "TRERF1 MUTATION ANALYSIS"
[1] 3
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               6              510 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               6              510 
[1] "CREBZF MUTATION ANALYSIS"
[1] 3
  CREBZF MUTATED CREBZF WILD-TYPE 
               7              509 
  CREBZF MUTATED CREBZF WILD-TYPE 
               7              509 
[1] "DNMT3A MUTATION ANALYSIS"
[1] 3
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              11              505 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              11              505 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             5            511 
  EMG1 MUTATED EMG1 WILD-TYPE 
             5            511 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
             8            508 
  IRS4 MUTATED IRS4 WILD-TYPE 
             8            508 
[1] "MYST4 MUTATION ANALYSIS"
[1] 3
  MYST4 MUTATED MYST4 WILD-TYPE 
             11             505 
  MYST4 MUTATED MYST4 WILD-TYPE 
             11             505 
[1] "MED9 MUTATION ANALYSIS"
[1] 3
  MED9 MUTATED MED9 WILD-TYPE 
             3            513 
  MED9 MUTATED MED9 WILD-TYPE 
             3            513 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              19              497 
  FAM47C MUTATED FAM47C WILD-TYPE 
              19              497 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             4            512 
  NRAS MUTATED NRAS WILD-TYPE 
             4            512 
[1] "PLXNA3 MUTATION ANALYSIS"
[1] 3
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               9              507 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               9              507 
[1] "TNRC18 MUTATION ANALYSIS"
[1] 3
  TNRC18 MUTATED TNRC18 WILD-TYPE 
              10              506 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
              10              506 
[1] "HTRA2 MUTATION ANALYSIS"
[1] 3
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             511 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             511 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              9             507 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              9             507 
[1] "CUL4B MUTATION ANALYSIS"
[1] 3
  CUL4B MUTATED CUL4B WILD-TYPE 
             10             506 
  CUL4B MUTATED CUL4B WILD-TYPE 
             10             506 
[1] "DLX6 MUTATION ANALYSIS"
[1] 3
  DLX6 MUTATED DLX6 WILD-TYPE 
             4            512 
  DLX6 MUTATED DLX6 WILD-TYPE 
             4            512 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            6           510 
  RB1 MUTATED RB1 WILD-TYPE 
            6           510 
[1] "ROBO3 MUTATION ANALYSIS"
[1] 3
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             511 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             511 
[1] "SRPX MUTATION ANALYSIS"
[1] 3
  SRPX MUTATED SRPX WILD-TYPE 
             4            512 
  SRPX MUTATED SRPX WILD-TYPE 
             4            512 
[1] "RBPJ MUTATION ANALYSIS"
[1] 3
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            509 
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            509 
[1] "TMEM216 MUTATION ANALYSIS"
[1] 3
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               513 
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               513 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             11             505 
  ARID2 MUTATED ARID2 WILD-TYPE 
             11             505 
[1] "SLC6A3 MUTATION ANALYSIS"
[1] 3
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               9              507 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               9              507 
[1] "PDGFRA MUTATION ANALYSIS"
[1] 3
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              10              506 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              10              506 
[1] "PTPN11 MUTATION ANALYSIS"
[1] 3
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               7              509 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               7              509 
[1] "MYT1 MUTATION ANALYSIS"
[1] 3
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            510 
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            510 
[1] "ZNF292 MUTATION ANALYSIS"
[1] 3
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              14              502 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              14              502 
[1] "PPL MUTATION ANALYSIS"
[1] 3
  PPL MUTATED PPL WILD-TYPE 
            6           510 
  PPL MUTATED PPL WILD-TYPE 
            6           510 
[1] "CIB1 MUTATION ANALYSIS"
[1] 3
  CIB1 MUTATED CIB1 WILD-TYPE 
             4            512 
  CIB1 MUTATED CIB1 WILD-TYPE 
             4            512 
[1] "ANKRD36 MUTATION ANALYSIS"
[1] 3
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                7               509 
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                7               509 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               4              512 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               4              512 
[1] "SMOC1 MUTATION ANALYSIS"
[1] 3
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              3             513 
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              3             513 
[1] "ABCA7 MUTATION ANALYSIS"
[1] 3
  ABCA7 MUTATED ABCA7 WILD-TYPE 
             10             506 
  ABCA7 MUTATED ABCA7 WILD-TYPE 
             10             506 
[1] "ZNF512B MUTATION ANALYSIS"
[1] 3
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               511 
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               511 
[1] "PRX MUTATION ANALYSIS"
[1] 3
  PRX MUTATED PRX WILD-TYPE 
           10           506 
  PRX MUTATED PRX WILD-TYPE 
           10           506 
[1] "SMARCB1 MUTATION ANALYSIS"
[1] 3
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                4               512 
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                4               512 
[1] "C9ORF79 MUTATION ANALYSIS"
[1] 3
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
               10               506 
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
               10               506 
[1] "KRT3 MUTATION ANALYSIS"
[1] 3
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            512 
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            512 
[1] "ELF4 MUTATION ANALYSIS"
[1] 3
  ELF4 MUTATED ELF4 WILD-TYPE 
             4            512 
  ELF4 MUTATED ELF4 WILD-TYPE 
             4            512 
[1] "NEU2 MUTATION ANALYSIS"
[1] 3
  NEU2 MUTATED NEU2 WILD-TYPE 
             6            510 
  NEU2 MUTATED NEU2 WILD-TYPE 
             6            510 
[1] "ZNF709 MUTATION ANALYSIS"
[1] 3
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               3              513 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               3              513 
[1] "R3HDM1 MUTATION ANALYSIS"
[1] 3
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               7              509 
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               7              509 
[1] "PLCG1 MUTATION ANALYSIS"
[1] 3
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              6             510 
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              6             510 
[1] "C14ORF4 MUTATION ANALYSIS"
[1] 3
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                3               513 
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                3               513 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              21              495 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              21              495 
[1] "C4BPA MUTATION ANALYSIS"
[1] 3
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             510 
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             510 
[1] "ENGASE MUTATION ANALYSIS"
[1] 3
  ENGASE MUTATED ENGASE WILD-TYPE 
               5              511 
  ENGASE MUTATED ENGASE WILD-TYPE 
               5              511 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
             6            510 
  DLC1 MUTATED DLC1 WILD-TYPE 
             6            510 
[1] "G6PC MUTATION ANALYSIS"
[1] 3
  G6PC MUTATED G6PC WILD-TYPE 
             6            510 
  G6PC MUTATED G6PC WILD-TYPE 
             6            510 
[1] "SLC12A7 MUTATION ANALYSIS"
[1] 3
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                7               509 
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                7               509 
[1] "RET MUTATION ANALYSIS"
[1] 3
  RET MUTATED RET WILD-TYPE 
            7           509 
  RET MUTATED RET WILD-TYPE 
            7           509 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             10             506 
  SETD2 MUTATED SETD2 WILD-TYPE 
             10             506 
[1] "ZC3H11A MUTATION ANALYSIS"
[1] 3
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                6               510 
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                6               510 
[1] "USP6 MUTATION ANALYSIS"
[1] 3
  USP6 MUTATED USP6 WILD-TYPE 
             7            509 
  USP6 MUTATED USP6 WILD-TYPE 
             7            509 
[1] "RBBP6 MUTATION ANALYSIS"
[1] 3
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              6             510 
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              6             510 
[1] "SLFN11 MUTATION ANALYSIS"
[1] 3
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               6              510 
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               6              510 
[1] "ASXL2 MUTATION ANALYSIS"
[1] 3
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              3             513 
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              3             513 
[1] "KRT15 MUTATION ANALYSIS"
[1] 3
  KRT15 MUTATED KRT15 WILD-TYPE 
              6             510 
  KRT15 MUTATED KRT15 WILD-TYPE 
              6             510 
[1] "FMR1 MUTATION ANALYSIS"
[1] 3
  FMR1 MUTATED FMR1 WILD-TYPE 
             5            511 
  FMR1 MUTATED FMR1 WILD-TYPE 
             5            511 
[1] "DDX5 MUTATION ANALYSIS"
[1] 3
  DDX5 MUTATED DDX5 WILD-TYPE 
             5            511 
  DDX5 MUTATED DDX5 WILD-TYPE 
             5            511 
[1] "SCN4A MUTATION ANALYSIS"
[1] 3
  SCN4A MUTATED SCN4A WILD-TYPE 
              6             510 
  SCN4A MUTATED SCN4A WILD-TYPE 
              6             510 
[1] "CCDC135 MUTATION ANALYSIS"
[1] 3
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                7               509 
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                7               509 
[1] "MYOCD MUTATION ANALYSIS"
[1] 3
  MYOCD MUTATED MYOCD WILD-TYPE 
              9             507 
  MYOCD MUTATED MYOCD WILD-TYPE 
              9             507 
[1] "TMEM184A MUTATION ANALYSIS"
[1] 3
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                513 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                513 
[1] "KTELC1 MUTATION ANALYSIS"
[1] 3
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               5              511 
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               5              511 
[1] "GPR133 MUTATION ANALYSIS"
[1] 3
  GPR133 MUTATED GPR133 WILD-TYPE 
               4              512 
  GPR133 MUTATED GPR133 WILD-TYPE 
               4              512 
[1] "CDH3 MUTATION ANALYSIS"
[1] 3
  CDH3 MUTATED CDH3 WILD-TYPE 
             3            513 
  CDH3 MUTATED CDH3 WILD-TYPE 
             3            513 
[1] "SLC25A5 MUTATION ANALYSIS"
[1] 3
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                4               512 
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                4               512 
[1] "LAMA4 MUTATION ANALYSIS"
[1] 3
  LAMA4 MUTATED LAMA4 WILD-TYPE 
              4             512 
  LAMA4 MUTATED LAMA4 WILD-TYPE 
              4             512 
[1] "NKD2 MUTATION ANALYSIS"
[1] 3
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            512 
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            512 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
            5           511 
  WRN MUTATED WRN WILD-TYPE 
            5           511 
[1] "PHF3 MUTATION ANALYSIS"
[1] 3
  PHF3 MUTATED PHF3 WILD-TYPE 
             8            508 
  PHF3 MUTATED PHF3 WILD-TYPE 
             8            508 
[1] "AGBL1 MUTATION ANALYSIS"
[1] 3
  AGBL1 MUTATED AGBL1 WILD-TYPE 
              5             511 
  AGBL1 MUTATED AGBL1 WILD-TYPE 
              5             511 
[1] "ZNF148 MUTATION ANALYSIS"
[1] 3
  ZNF148 MUTATED ZNF148 WILD-TYPE 
               4              512 
  ZNF148 MUTATED ZNF148 WILD-TYPE 
               4              512 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 516 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 516 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = IDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        9      7      7
  IDH1 WILD-TYPE      0      3      1
D1V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            9              0
  CLUS_2            7              3
  CLUS_3            7              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        6      6      5      6
  IDH1 WILD-TYPE      1      1      2      0
D1V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            6              1
  CLUS_2            6              1
  CLUS_3            5              2
  CLUS_4            6              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      189     52    158
  IDH1 WILD-TYPE     38     59     17
D1V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          189             38
  CLUS_2           52             59
  CLUS_3          158             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED      205     38    145     13
  IDH1 WILD-TYPE      4     98     13      0
D1V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          205              4
  CLUS_2           38             98
  CLUS_3          145             13
  CLUS_4           13              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       75     63    110     89
  IDH1 WILD-TYPE     16     32     16     28
D1V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           75             16
  CLUS_2           63             32
  CLUS_3          110             16
  CLUS_4           89             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED       76    128    133
  IDH1 WILD-TYPE      7     32     53
D1V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           76              7
  CLUS_2          128             32
  CLUS_3          133             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH1 MUTATED      128     41     98    110     24
  IDH1 WILD-TYPE      2     74      8     25      6
D1V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          128              2
  CLUS_2           41             74
  CLUS_3           98              8
  CLUS_4          110             25
  CLUS_5           24              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH1 MUTATED      133      2     32     52     84     37     61
  IDH1 WILD-TYPE      2     69      4     16      7      4     13
D1V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          133              2
  CLUS_2            2             69
  CLUS_3           32              4
  CLUS_4           52             16
  CLUS_5           84              7
  CLUS_6           37              4
  CLUS_7           61             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED      102     73     77    145
  IDH1 WILD-TYPE     38     34      6     37
D1V9, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          102             38
  CLUS_2           73             34
  CLUS_3           77              6
  CLUS_4          145             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      208    154     35
  IDH1 WILD-TYPE     15     32     68
D1V10, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          208             15
  CLUS_2          154             32
  CLUS_3           35             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       96     76    101    121
  IDH1 WILD-TYPE     31     43      5     35
D1V11, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           96             31
  CLUS_2           76             43
  CLUS_3          101              5
  CLUS_4          121             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDH1 MUTATED       93     69     90     54      0     88
  IDH1 WILD-TYPE      6      8     30      3     63      4
D1V12, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           93              6
  CLUS_2           69              8
  CLUS_3           90             30
  CLUS_4           54              3
  CLUS_5            0             63
  CLUS_6           88              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        8      4      4
  TP53 WILD-TYPE      1      6      4
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            8              1
  CLUS_2            4              6
  CLUS_3            4              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        5      7      1      3
  TP53 WILD-TYPE      2      0      6      3
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5              2
  CLUS_2            7              0
  CLUS_3            1              6
  CLUS_4            3              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      178     61     12
  TP53 WILD-TYPE     49     50    163
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          178             49
  CLUS_2           61             50
  CLUS_3           12            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      202     32      7     10
  TP53 WILD-TYPE      7    104    151      3
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          202              7
  CLUS_2           32            104
  CLUS_3            7            151
  CLUS_4           10              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       49     45     69     40
  TP53 WILD-TYPE     42     50     57     77
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           49             42
  CLUS_2           45             50
  CLUS_3           69             57
  CLUS_4           40             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       49     60     94
  TP53 WILD-TYPE     34    100     92
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           49             34
  CLUS_2           60            100
  CLUS_3           94             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED      127     45      6     59     14
  TP53 WILD-TYPE      3     70    100     76     16
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          127              3
  CLUS_2           45             70
  CLUS_3            6            100
  CLUS_4           59             76
  CLUS_5           14             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED      130      8      1     50      4     38     20
  TP53 WILD-TYPE      5     63     35     18     87      3     54
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          130              5
  CLUS_2            8             63
  CLUS_3            1             35
  CLUS_4           50             18
  CLUS_5            4             87
  CLUS_6           38              3
  CLUS_7           20             54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       84     71     17     75
  TP53 WILD-TYPE     56     36     66    107
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           84             56
  CLUS_2           71             36
  CLUS_3           17             66
  CLUS_4           75            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      134     73     40
  TP53 WILD-TYPE     89    113     63
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          134             89
  CLUS_2           73            113
  CLUS_3           40             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       88     66     24     66
  TP53 WILD-TYPE     39     53     82     90
D2V11, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           88             39
  CLUS_2           66             53
  CLUS_3           24             82
  CLUS_4           66             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       88     47     42      4      8     55
  TP53 WILD-TYPE     11     30     78     53     55     37
D2V12, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           88             11
  CLUS_2           47             30
  CLUS_3           42             78
  CLUS_4            4             53
  CLUS_5            8             55
  CLUS_6           55             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = ATRX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED        8      3      3
  ATRX WILD-TYPE      1      7      5
D3V1, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            8              1
  CLUS_2            3              7
  CLUS_3            3              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        5      5      1      3
  ATRX WILD-TYPE      2      2      6      3
D3V2, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            5              2
  CLUS_2            5              2
  CLUS_3            1              6
  CLUS_4            3              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED      146     43      9
  ATRX WILD-TYPE     81     68    166
D3V3, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          146             81
  CLUS_2           43             68
  CLUS_3            9            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED      164     24      3      7
  ATRX WILD-TYPE     45    112    155      6
D3V4, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          164             45
  CLUS_2           24            112
  CLUS_3            3            155
  CLUS_4            7              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       43     34     54     38
  ATRX WILD-TYPE     48     61     72     79
D3V5, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           43             48
  CLUS_2           34             61
  CLUS_3           54             72
  CLUS_4           38             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED       43     56     70
  ATRX WILD-TYPE     40    104    116
D3V6, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           43             40
  CLUS_2           56            104
  CLUS_3           70            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRX MUTATED      107     30      2     49     10
  ATRX WILD-TYPE     23     85    104     86     20
D3V7, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          107             23
  CLUS_2           30             85
  CLUS_3            2            104
  CLUS_4           49             86
  CLUS_5           10             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATRX MUTATED      109      4      1     40      1     26     17
  ATRX WILD-TYPE     26     67     35     28     90     15     57
D3V8, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          109             26
  CLUS_2            4             67
  CLUS_3            1             35
  CLUS_4           40             28
  CLUS_5            1             90
  CLUS_6           26             15
  CLUS_7           17             57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       63     61     10     60
  ATRX WILD-TYPE     77     46     73    122
D3V9, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           63             77
  CLUS_2           61             46
  CLUS_3           10             73
  CLUS_4           60            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED      109     60     25
  ATRX WILD-TYPE    114    126     78
D3V10, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          109            114
  CLUS_2           60            126
  CLUS_3           25             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       70     53     16     52
  ATRX WILD-TYPE     57     66     90    104
D3V11, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           70             57
  CLUS_2           53             66
  CLUS_3           16             90
  CLUS_4           52            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATRX MUTATED       69     41     34      2      3     42
  ATRX WILD-TYPE     30     36     86     55     60     50
D3V12, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           69             30
  CLUS_2           41             36
  CLUS_3           34             86
  CLUS_4            2             55
  CLUS_5            3             60
  CLUS_6           42             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = CIC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        0      5      2
  CIC WILD-TYPE      9      5      6
D4V1, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0             9
  CLUS_2           5             5
  CLUS_3           2             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        0      0      5      2
  CIC WILD-TYPE      7      7      2      4
D4V2, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             7
  CLUS_3           5             2
  CLUS_4           2             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        2      5    101
  CIC WILD-TYPE    225    106     74
D4V3, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           2           225
  CLUS_2           5           106
  CLUS_3         101            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        0      7    101      0
  CIC WILD-TYPE    209    129     57     13
D4V4, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           209
  CLUS_2           7           129
  CLUS_3         101            57
  CLUS_4           0            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       13     17     35     30
  CIC WILD-TYPE     78     78     91     87
D4V5, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          13            78
  CLUS_2          17            78
  CLUS_3          35            91
  CLUS_4          30            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       15     41     39
  CIC WILD-TYPE     68    119    147
D4V6, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          15            68
  CLUS_2          41           119
  CLUS_3          39           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        0      2     73     28      5
  CIC WILD-TYPE    130    113     33    107     25
D4V7, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           130
  CLUS_2           2           113
  CLUS_3          73            33
  CLUS_4          28           107
  CLUS_5           5            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIC MUTATED        0      0     23      0     60      1     24
  CIC WILD-TYPE    135     71     13     68     31     40     50
D4V8, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           135
  CLUS_2           0            71
  CLUS_3          23            13
  CLUS_4           0            68
  CLUS_5          60            31
  CLUS_6           1            40
  CLUS_7          24            50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       17      3     46     42
  CIC WILD-TYPE    123    104     37    140
D4V9, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          17           123
  CLUS_2           3           104
  CLUS_3          46            37
  CLUS_4          42           140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       55     51      2
  CIC WILD-TYPE    168    135    101
D4V10, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          55           168
  CLUS_2          51           135
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        7      8     60     33
  CIC WILD-TYPE    120    111     46    123
D4V11, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           7           120
  CLUS_2           8           111
  CLUS_3          60            46
  CLUS_4          33           123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIC MUTATED        2     16     25     43      0     22
  CIC WILD-TYPE     97     61     95     14     63     70
D4V12, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           2            97
  CLUS_2          16            61
  CLUS_3          25            95
  CLUS_4          43            14
  CLUS_5           0            63
  CLUS_6          22            70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = NOTCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        0      2      1
  NOTCH1 WILD-TYPE      9      8      7
D5V1, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2                8
  CLUS_3              1                7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        0      0      2      1
  NOTCH1 WILD-TYPE      7      7      5      5
D5V2, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                7
  CLUS_3              2                5
  CLUS_4              1                5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        8      4     30
  NOTCH1 WILD-TYPE    219    107    145
D5V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              8              219
  CLUS_2              4              107
  CLUS_3             30              145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        8      1     32      1
  NOTCH1 WILD-TYPE    201    135    126     12
D5V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              8              201
  CLUS_2              1              135
  CLUS_3             32              126
  CLUS_4              1               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        6      8     15     10
  NOTCH1 WILD-TYPE     85     87    111    107
D5V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              6               85
  CLUS_2              8               87
  CLUS_3             15              111
  CLUS_4             10              107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        5     16     18
  NOTCH1 WILD-TYPE     78    144    168
D5V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              5               78
  CLUS_2             16              144
  CLUS_3             18              168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH1 MUTATED        3      3     21     15      0
  NOTCH1 WILD-TYPE    127    112     85    120     30
D5V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3              112
  CLUS_3             21               85
  CLUS_4             15              120
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED        3      0     13      1      9      3     13
  NOTCH1 WILD-TYPE    132     71     23     67     82     38     61
D5V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              0               71
  CLUS_3             13               23
  CLUS_4              1               67
  CLUS_5              9               82
  CLUS_6              3               38
  CLUS_7             13               61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        4      3     14     20
  NOTCH1 WILD-TYPE    136    104     69    162
D5V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              4              136
  CLUS_2              3              104
  CLUS_3             14               69
  CLUS_4             20              162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       16     23      2
  NOTCH1 WILD-TYPE    207    163    101
D5V10, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             16              207
  CLUS_2             23              163
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        2      3     16     20
  NOTCH1 WILD-TYPE    125    116     90    136
D5V11, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3              116
  CLUS_3             16               90
  CLUS_4             20              136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOTCH1 MUTATED        3      7     15      7      0      9
  NOTCH1 WILD-TYPE     96     70    105     50     63     83
D5V12, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3               96
  CLUS_2              7               70
  CLUS_3             15              105
  CLUS_4              7               50
  CLUS_5              0               63
  CLUS_6              9               83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = IDH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        0      2      0
  IDH2 WILD-TYPE      9      8      8
D6V1, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5322 
"IDH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        0      0      2      0
  IDH2 WILD-TYPE      7      7      5      6
D6V2, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5322 
"IDH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        3      2     15
  IDH2 WILD-TYPE    224    109    160
D6V3, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            224
  CLUS_2            2            109
  CLUS_3           15            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        3      4     13      0
  IDH2 WILD-TYPE    206    132    145     13
D6V4, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            206
  CLUS_2            4            132
  CLUS_3           13            145
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        1      5      4      7
  IDH2 WILD-TYPE     90     90    122    110
D6V5, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            5             90
  CLUS_3            4            122
  CLUS_4            7            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        0      8      9
  IDH2 WILD-TYPE     83    152    177
D6V6, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             83
  CLUS_2            8            152
  CLUS_3            9            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        1      1      8      9      1
  IDH2 WILD-TYPE    129    114     98    126     29
D6V7, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1            114
  CLUS_3            8             98
  CLUS_4            9            126
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH2 MUTATED        1      0      4      1      6      0      8
  IDH2 WILD-TYPE    134     71     32     67     85     41     66
D6V8, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            134
  CLUS_2            0             71
  CLUS_3            4             32
  CLUS_4            1             67
  CLUS_5            6             85
  CLUS_6            0             41
  CLUS_7            8             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        3      0      5     12
  IDH2 WILD-TYPE    137    107     78    170
D6V9, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            137
  CLUS_2            0            107
  CLUS_3            5             78
  CLUS_4           12            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        5     15      0
  IDH2 WILD-TYPE    218    171    103
D6V10, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            5            218
  CLUS_2           15            171
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        1      3      5     11
  IDH2 WILD-TYPE    126    116    101    145
D6V11, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            3            116
  CLUS_3            5            101
  CLUS_4           11            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDH2 MUTATED        2      3     10      3      0      2
  IDH2 WILD-TYPE     97     74    110     54     63     90
D6V12, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            2             97
  CLUS_2            3             74
  CLUS_3           10            110
  CLUS_4            3             54
  CLUS_5            0             63
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = PIK3R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        2      1      0
  PIK3R1 WILD-TYPE      7      9      8
D7V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2                7
  CLUS_2              1                9
  CLUS_3              0                8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        2      0      1      0
  PIK3R1 WILD-TYPE      5      7      6      6
D7V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              0                7
  CLUS_3              1                6
  CLUS_4              0                6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        3      6     13
  PIK3R1 WILD-TYPE    224    105    162
D7V3, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              224
  CLUS_2              6              105
  CLUS_3             13              162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        2      6     12      2
  PIK3R1 WILD-TYPE    207    130    146     11
D7V4, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2              207
  CLUS_2              6              130
  CLUS_3             12              146
  CLUS_4              2               11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        5      4      5      6
  PIK3R1 WILD-TYPE     86     91    121    111
D7V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5               86
  CLUS_2              4               91
  CLUS_3              5              121
  CLUS_4              6              111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        3      9      8
  PIK3R1 WILD-TYPE     80    151    178
D7V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               80
  CLUS_2              9              151
  CLUS_3              8              178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        2      6      8      4      2
  PIK3R1 WILD-TYPE    128    109     98    131     28
D7V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              6              109
  CLUS_3              8               98
  CLUS_4              4              131
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3R1 MUTATED        3      2      1      0      9      3      4
  PIK3R1 WILD-TYPE    132     69     35     68     82     38     70
D7V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              2               69
  CLUS_3              1               35
  CLUS_4              0               68
  CLUS_5              9               82
  CLUS_6              3               38
  CLUS_7              4               70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        6      3      8      5
  PIK3R1 WILD-TYPE    134    104     75    177
D7V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              6              134
  CLUS_2              3              104
  CLUS_3              8               75
  CLUS_4              5              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED       12      7      3
  PIK3R1 WILD-TYPE    211    179    100
D7V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             12              211
  CLUS_2              7              179
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        5      5      6      6
  PIK3R1 WILD-TYPE    122    114    100    150
D7V11, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              5              114
  CLUS_3              6              100
  CLUS_4              6              150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3R1 MUTATED        3      3      5      5      2      4
  PIK3R1 WILD-TYPE     96     74    115     52     61     88
D7V12, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               96
  CLUS_2              3               74
  CLUS_3              5              115
  CLUS_4              5               52
  CLUS_5              2               61
  CLUS_6              4               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = FUBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        0      4      0
  FUBP1 WILD-TYPE      9      6      8
D8V1, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             4               6
  CLUS_3             0               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0      0      4      0
  FUBP1 WILD-TYPE      7      7      3      6
D8V2, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               7
  CLUS_3             4               3
  CLUS_4             0               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        0      1     46
  FUBP1 WILD-TYPE    227    110    129
D8V3, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             227
  CLUS_2             1             110
  CLUS_3            46             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0      5     42      0
  FUBP1 WILD-TYPE    209    131    116     13
D8V4, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             209
  CLUS_2             5             131
  CLUS_3            42             116
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        7      7     13     14
  FUBP1 WILD-TYPE     84     88    113    103
D8V5, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             7              84
  CLUS_2             7              88
  CLUS_3            13             113
  CLUS_4            14             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        7     18     16
  FUBP1 WILD-TYPE     76    142    170
D8V6, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             7              76
  CLUS_2            18             142
  CLUS_3            16             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUBP1 MUTATED        0      2     31     11      3
  FUBP1 WILD-TYPE    130    113     75    124     27
D8V7, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2             113
  CLUS_3            31              75
  CLUS_4            11             124
  CLUS_5             3              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FUBP1 MUTATED        0      0     12      0     22      1     12
  FUBP1 WILD-TYPE    135     71     24     68     69     40     62
D8V8, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             135
  CLUS_2             0              71
  CLUS_3            12              24
  CLUS_4             0              68
  CLUS_5            22              69
  CLUS_6             1              40
  CLUS_7            12              62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        6      1     19     21
  FUBP1 WILD-TYPE    134    106     64    161
D8V9, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             6             134
  CLUS_2             1             106
  CLUS_3            19              64
  CLUS_4            21             161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED       24     22      1
  FUBP1 WILD-TYPE    199    164    102
D8V10, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1            24             199
  CLUS_2            22             164
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        6      4     21     16
  FUBP1 WILD-TYPE    121    115     85    140
D8V11, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             4             115
  CLUS_3            21              85
  CLUS_4            16             140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FUBP1 MUTATED        0      6     15     15      0     11
  FUBP1 WILD-TYPE     99     71    105     42     63     81
D8V12, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0              99
  CLUS_2             6              71
  CLUS_3            15             105
  CLUS_4            15              42
  CLUS_5             0              63
  CLUS_6            11              81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = NF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        0      1      0
  NF1 WILD-TYPE      9      9      8
D9V1, multiclass
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5322 
"NF1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        0      1      0      0
  NF1 WILD-TYPE      7      6      7      6
D9V2, multiclass
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5322 
"NF1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       12     13      8
  NF1 WILD-TYPE    215     98    167
D9V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          12           215
  CLUS_2          13            98
  CLUS_3           8           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1     24      7      1
  NF1 WILD-TYPE    208    112    151     12
D9V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           208
  CLUS_2          24           112
  CLUS_3           7           151
  CLUS_4           1            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1     10      6      8
  NF1 WILD-TYPE     90     85    120    109
D9V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            90
  CLUS_2          10            85
  CLUS_3           6           120
  CLUS_4           8           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        2      8     15
  NF1 WILD-TYPE     81    152    171
D9V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            81
  CLUS_2           8           152
  CLUS_3          15           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        1     19      6      5      2
  NF1 WILD-TYPE    129     96    100    130     28
D9V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           129
  CLUS_2          19            96
  CLUS_3           6           100
  CLUS_4           5           130
  CLUS_5           2            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF1 MUTATED        1     16      1      3      6      4      2
  NF1 WILD-TYPE    134     55     35     65     85     37     72
D9V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           134
  CLUS_2          16            55
  CLUS_3           1            35
  CLUS_4           3            65
  CLUS_5           6            85
  CLUS_6           4            37
  CLUS_7           2            72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        8     11      5      9
  NF1 WILD-TYPE    132     96     78    173
D9V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           8           132
  CLUS_2          11            96
  CLUS_3           5            78
  CLUS_4           9           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       10      6     17
  NF1 WILD-TYPE    213    180     86
D9V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          10           213
  CLUS_2           6           180
  CLUS_3          17            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       11     10      5      7
  NF1 WILD-TYPE    116    109    101    149
D9V11, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          11           116
  CLUS_2          10           109
  CLUS_3           5           101
  CLUS_4           7           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NF1 MUTATED        1      4      5      2     16      5
  NF1 WILD-TYPE     98     73    115     55     47     87
D9V12, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            98
  CLUS_2           4            73
  CLUS_3           5           115
  CLUS_4           2            55
  CLUS_5          16            47
  CLUS_6           5            87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = TCF12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        0      0      1
  TCF12 WILD-TYPE      9     10      7
D10V1, multiclass
[1] "Remove cluster labels:" "TCF12 MUTATED"         
clus
  TCF12 MUTATED TCF12 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        0      0      0      1
  TCF12 WILD-TYPE      7      7      7      5
D10V2, multiclass
[1] "Remove cluster labels:" "TCF12 MUTATED"         
clus
  TCF12 MUTATED TCF12 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        7      2      6
  TCF12 WILD-TYPE    220    109    169
D10V3, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             7             220
  CLUS_2             2             109
  CLUS_3             6             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        6      3      6      0
  TCF12 WILD-TYPE    203    133    152     13
D10V4, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             6             203
  CLUS_2             3             133
  CLUS_3             6             152
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        3      2      5      2
  TCF12 WILD-TYPE     88     93    121    115
D10V5, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             3              88
  CLUS_2             2              93
  CLUS_3             5             121
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        1      4      7
  TCF12 WILD-TYPE     82    156    179
D10V6, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             1              82
  CLUS_2             4             156
  CLUS_3             7             179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF12 MUTATED        4      3      5      3      0
  TCF12 WILD-TYPE    126    112    101    132     30
D10V7, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3             112
  CLUS_3             5             101
  CLUS_4             3             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCF12 MUTATED        4      1      3      2      2      2      1
  TCF12 WILD-TYPE    131     70     33     66     89     39     73
D10V8, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             131
  CLUS_2             1              70
  CLUS_3             3              33
  CLUS_4             2              66
  CLUS_5             2              89
  CLUS_6             2              39
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        5      2      3      5
  TCF12 WILD-TYPE    135    105     80    177
D10V9, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             5             135
  CLUS_2             2             105
  CLUS_3             3              80
  CLUS_4             5             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        8      6      1
  TCF12 WILD-TYPE    215    180    102
D10V10, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             8             215
  CLUS_2             6             180
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        5      0      5      5
  TCF12 WILD-TYPE    122    119    101    151
D10V11, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             0             119
  CLUS_3             5             101
  CLUS_4             5             151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCF12 MUTATED        4      0      5      3      1      2
  TCF12 WILD-TYPE     95     77    115     54     62     90
D10V12, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4              95
  CLUS_2             0              77
  CLUS_3             5             115
  CLUS_4             3              54
  CLUS_5             1              62
  CLUS_6             2              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      0      1
  PTEN WILD-TYPE      9     10      7
D11V1, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      0      0      0
  PTEN WILD-TYPE      6      7      7      6
D11V2, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        9     13      2
  PTEN WILD-TYPE    218     98    173
D11V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            9            218
  CLUS_2           13             98
  CLUS_3            2            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3     20      1      0
  PTEN WILD-TYPE    206    116    157     13
D11V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            206
  CLUS_2           20            116
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        2      9      2      2
  PTEN WILD-TYPE     89     86    124    115
D11V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             89
  CLUS_2            9             86
  CLUS_3            2            124
  CLUS_4            2            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      2     13
  PTEN WILD-TYPE     83    158    173
D11V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             83
  CLUS_2            2            158
  CLUS_3           13            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        3     18      1      0      2
  PTEN WILD-TYPE    127     97    105    135     28
D11V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            127
  CLUS_2           18             97
  CLUS_3            1            105
  CLUS_4            0            135
  CLUS_5            2             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED        2     18      0      1      1      2      0
  PTEN WILD-TYPE    133     53     36     67     90     39     74
D11V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            133
  CLUS_2           18             53
  CLUS_3            0             36
  CLUS_4            1             67
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       12      8      1      3
  PTEN WILD-TYPE    128     99     82    179
D11V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12            128
  CLUS_2            8             99
  CLUS_3            1             82
  CLUS_4            3            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      1     17
  PTEN WILD-TYPE    217    185     86
D11V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            217
  CLUS_2            1            185
  CLUS_3           17             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        8     13      1      2
  PTEN WILD-TYPE    119    106    105    154
D11V11, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            8            119
  CLUS_2           13            106
  CLUS_3            1            105
  CLUS_4            2            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        3      1      0      1     17      2
  PTEN WILD-TYPE     96     76    120     56     46     90
D11V12, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             96
  CLUS_2            1             76
  CLUS_3            0            120
  CLUS_4            1             56
  CLUS_5           17             46
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        0      1      0
  ARID1A WILD-TYPE      9      9      8
D12V1, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5276       TCGA-DB-5277 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      1      0      0
  ARID1A WILD-TYPE      7      6      7      6
D12V2, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5276       TCGA-DB-5277 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        4      4     11
  ARID1A WILD-TYPE    223    107    164
D12V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              223
  CLUS_2              4              107
  CLUS_3             11              164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        6      2     12      0
  ARID1A WILD-TYPE    203    134    146     13
D12V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              203
  CLUS_2              2              134
  CLUS_3             12              146
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        4      1      8      5
  ARID1A WILD-TYPE     87     94    118    112
D12V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               87
  CLUS_2              1               94
  CLUS_3              8              118
  CLUS_4              5              112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        5      6      7
  ARID1A WILD-TYPE     78    154    179
D12V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5               78
  CLUS_2              6              154
  CLUS_3              7              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        4      1     10      5      0
  ARID1A WILD-TYPE    126    114     96    130     30
D12V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1              114
  CLUS_3             10               96
  CLUS_4              5              130
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        4      0      3      2      7      1      3
  ARID1A WILD-TYPE    131     71     33     66     84     40     71
D12V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              131
  CLUS_2              0               71
  CLUS_3              3               33
  CLUS_4              2               66
  CLUS_5              7               84
  CLUS_6              1               40
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        6      2      5      7
  ARID1A WILD-TYPE    134    105     78    175
D12V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              134
  CLUS_2              2              105
  CLUS_3              5               78
  CLUS_4              7              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       10      8      2
  ARID1A WILD-TYPE    213    178    101
D12V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             10              213
  CLUS_2              8              178
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        2      1     10      7
  ARID1A WILD-TYPE    125    118     96    149
D12V11, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2              125
  CLUS_2              1              118
  CLUS_3             10               96
  CLUS_4              7              149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED        2      3      3      7      1      4
  ARID1A WILD-TYPE     97     74    117     50     62     88
D12V12, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               97
  CLUS_2              3               74
  CLUS_3              3              117
  CLUS_4              7               50
  CLUS_5              1               62
  CLUS_6              4               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = EGFR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0      0      0
  EGFR WILD-TYPE      9     10      8
D13V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      0      0      0
  EGFR WILD-TYPE      7      7      7      6
D13V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        8     24      3
  EGFR WILD-TYPE    219     87    172
D13V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            8            219
  CLUS_2           24             87
  CLUS_3            3            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0     33      2      0
  EGFR WILD-TYPE    209    103    156     13
D13V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            209
  CLUS_2           33            103
  CLUS_3            2            156
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        4      9      5      9
  EGFR WILD-TYPE     87     86    121    108
D13V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            4             87
  CLUS_2            9             86
  CLUS_3            5            121
  CLUS_4            9            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        1     10     16
  EGFR WILD-TYPE     82    150    170
D13V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            1             82
  CLUS_2           10            150
  CLUS_3           16            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGFR MUTATED        0     26      2      5      2
  EGFR WILD-TYPE    130     89    104    130     28
D13V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            130
  CLUS_2           26             89
  CLUS_3            2            104
  CLUS_4            5            130
  CLUS_5            2             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EGFR MUTATED        0     25      1      6      0      1      2
  EGFR WILD-TYPE    135     46     35     62     91     40     72
D13V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            135
  CLUS_2           25             46
  CLUS_3            1             35
  CLUS_4            6             62
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            2             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       11     11      0     13
  EGFR WILD-TYPE    129     96     83    169
D13V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           11            129
  CLUS_2           11             96
  CLUS_3            0             83
  CLUS_4           13            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        1      9     25
  EGFR WILD-TYPE    222    177     78
D13V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            1            222
  CLUS_2            9            177
  CLUS_3           25             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        6     17      0     12
  EGFR WILD-TYPE    121    102    106    144
D13V11, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            6            121
  CLUS_2           17            102
  CLUS_3            0            106
  CLUS_4           12            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EGFR MUTATED        0      1      8      0     24      2
  EGFR WILD-TYPE     99     76    112     57     39     90
D13V12, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0             99
  CLUS_2            1             76
  CLUS_3            8            112
  CLUS_4            0             57
  CLUS_5           24             39
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = GAGE2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      0      0
  GAGE2A WILD-TYPE      8     10      8
D14V1, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5144       TCGA-E1-5302       TCGA-E1-5304       TCGA-E1-5311 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      0      0      0
  GAGE2A WILD-TYPE      6      7      7      6
D14V2, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5144       TCGA-E1-5302       TCGA-E1-5304       TCGA-E1-5311 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        4      1      3
  GAGE2A WILD-TYPE    223    110    172
D14V3, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              4              223
  CLUS_2              1              110
  CLUS_3              3              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        4      1      3      0
  GAGE2A WILD-TYPE    205    135    155     13
D14V4, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              4              205
  CLUS_2              1              135
  CLUS_3              3              155
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      2      3      2
  GAGE2A WILD-TYPE     90     93    123    115
D14V5, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               90
  CLUS_2              2               93
  CLUS_3              3              123
  CLUS_4              2              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      3      4
  GAGE2A WILD-TYPE     82    157    182
D14V6, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               82
  CLUS_2              3              157
  CLUS_3              4              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        1      2      2      2      1
  GAGE2A WILD-TYPE    129    113    104    133     29
D14V7, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2              113
  CLUS_3              2              104
  CLUS_4              2              133
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAGE2A MUTATED        2      1      0      0      1      1      3
  GAGE2A WILD-TYPE    133     70     36     68     90     40     71
D14V8, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              2              133
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              0               68
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      3      1      3
  GAGE2A WILD-TYPE    139    104     82    179
D14V9, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              139
  CLUS_2              3              104
  CLUS_3              1               82
  CLUS_4              3              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        3      3      2
  GAGE2A WILD-TYPE    220    183    101
D14V10, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3              220
  CLUS_2              3              183
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        0      4      1      3
  GAGE2A WILD-TYPE    127    115    105    153
D14V11, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0              127
  CLUS_2              4              115
  CLUS_3              1              105
  CLUS_4              3              153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAGE2A MUTATED        1      3      2      0      1      1
  GAGE2A WILD-TYPE     98     74    118     57     62     91
D14V12, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               98
  CLUS_2              3               74
  CLUS_3              2              118
  CLUS_4              0               57
  CLUS_5              1               62
  CLUS_6              1               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        0      0      0
  NUDT11 WILD-TYPE      9     10      8
D15V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      0      0      0
  NUDT11 WILD-TYPE      7      7      7      6
D15V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        5      3      3
  NUDT11 WILD-TYPE    222    108    172
D15V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              5              222
  CLUS_2              3              108
  CLUS_3              3              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        5      1      4      1
  NUDT11 WILD-TYPE    204    135    154     12
D15V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              5              204
  CLUS_2              1              135
  CLUS_3              4              154
  CLUS_4              1               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        2      4      4      1
  NUDT11 WILD-TYPE     89     91    122    116
D15V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               89
  CLUS_2              4               91
  CLUS_3              4              122
  CLUS_4              1              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      3      6
  NUDT11 WILD-TYPE     81    157    180
D15V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               81
  CLUS_2              3              157
  CLUS_3              6              180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        2      3      3      1      2
  NUDT11 WILD-TYPE    128    112    103    134     28
D15V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3              112
  CLUS_3              3              103
  CLUS_4              1              134
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        3      0      1      0      3      3      1
  NUDT11 WILD-TYPE    132     71     35     68     88     38     73
D15V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              0               71
  CLUS_3              1               35
  CLUS_4              0               68
  CLUS_5              3               88
  CLUS_6              3               38
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      4      4      1
  NUDT11 WILD-TYPE    139    103     79    181
D15V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              4              103
  CLUS_3              4               79
  CLUS_4              1              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        5      3      2
  NUDT11 WILD-TYPE    218    183    101
D15V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              5              218
  CLUS_2              3              183
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      4      2      3
  NUDT11 WILD-TYPE    126    115    104    153
D15V11, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4              115
  CLUS_3              2              104
  CLUS_4              3              153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUDT11 MUTATED        2      3      1      0      0      4
  NUDT11 WILD-TYPE     97     74    119     57     63     88
D15V12, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               97
  CLUS_2              3               74
  CLUS_3              1              119
  CLUS_4              0               57
  CLUS_5              0               63
  CLUS_6              4               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        0      0      0
  PIK3CA WILD-TYPE      9     10      8
D16V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      0      0      0
  PIK3CA WILD-TYPE      7      7      7      6
D16V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        7     12     25
  PIK3CA WILD-TYPE    220     99    150
D16V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7              220
  CLUS_2             12               99
  CLUS_3             25              150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        3     19     22      0
  PIK3CA WILD-TYPE    206    117    136     13
D16V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3              206
  CLUS_2             19              117
  CLUS_3             22              136
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        9     10      6     11
  PIK3CA WILD-TYPE     82     85    120    106
D16V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               82
  CLUS_2             10               85
  CLUS_3              6              120
  CLUS_4             11              106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        7     16     13
  PIK3CA WILD-TYPE     76    144    173
D16V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7               76
  CLUS_2             16              144
  CLUS_3             13              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        2     14     15     10      3
  PIK3CA WILD-TYPE    128    101     91    125     27
D16V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2              128
  CLUS_2             14              101
  CLUS_3             15               91
  CLUS_4             10              125
  CLUS_5              3               27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED        1     11      2      2     15      4      9
  PIK3CA WILD-TYPE    134     60     34     66     76     37     65
D16V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              134
  CLUS_2             11               60
  CLUS_3              2               34
  CLUS_4              2               66
  CLUS_5             15               76
  CLUS_6              4               37
  CLUS_7              9               65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        6     14     11     13
  PIK3CA WILD-TYPE    134     93     72    169
D16V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6              134
  CLUS_2             14               93
  CLUS_3             11               72
  CLUS_4             13              169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       13     16     15
  PIK3CA WILD-TYPE    210    170     88
D16V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             13              210
  CLUS_2             16              170
  CLUS_3             15               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        6     10     13     15
  PIK3CA WILD-TYPE    121    109     93    141
D16V11, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6              121
  CLUS_2             10              109
  CLUS_3             13               93
  CLUS_4             15              141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        0      4     13     13     10      4
  PIK3CA WILD-TYPE     99     73    107     44     53     88
D16V12, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               99
  CLUS_2              4               73
  CLUS_3             13              107
  CLUS_4             13               44
  CLUS_5             10               53
  CLUS_6              4               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = STK19 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        0      0      0
  STK19 WILD-TYPE      9     10      8
D17V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        0      0      0      0
  STK19 WILD-TYPE      7      7      7      6
D17V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        5      3      2
  STK19 WILD-TYPE    222    108    173
D17V3, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             5             222
  CLUS_2             3             108
  CLUS_3             2             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        4      5      1      0
  STK19 WILD-TYPE    205    131    157     13
D17V4, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             4             205
  CLUS_2             5             131
  CLUS_3             1             157
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        3      0      2      2
  STK19 WILD-TYPE     88     95    124    115
D17V5, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3              88
  CLUS_2             0              95
  CLUS_3             2             124
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        2      3      2
  STK19 WILD-TYPE     81    157    184
D17V6, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2              81
  CLUS_2             3             157
  CLUS_3             2             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK19 MUTATED        2      3      0      4      1
  STK19 WILD-TYPE    128    112    106    131     29
D17V7, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3             112
  CLUS_3             0             106
  CLUS_4             4             131
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK19 MUTATED        2      2      0      3      1      1      1
  STK19 WILD-TYPE    133     69     36     65     90     40     73
D17V8, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             3              65
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        1      4      0      5
  STK19 WILD-TYPE    139    103     83    177
D17V9, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1             139
  CLUS_2             4             103
  CLUS_3             0              83
  CLUS_4             5             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      4      3
  STK19 WILD-TYPE    220    182    100
D17V10, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3             220
  CLUS_2             4             182
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        0      6      0      4
  STK19 WILD-TYPE    127    113    106    152
D17V11, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             6             113
  CLUS_3             0             106
  CLUS_4             4             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK19 MUTATED        1      1      3      0      2      3
  STK19 WILD-TYPE     98     76    117     57     61     89
D17V12, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             1              76
  CLUS_3             3             117
  CLUS_4             0              57
  CLUS_5             2              61
  CLUS_6             3              89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = SMARCA4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        0      0      0
  SMARCA4 WILD-TYPE      9     10      8
D18V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        0      0      0      0
  SMARCA4 WILD-TYPE      7      7      7      6
D18V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       14      5      7
  SMARCA4 WILD-TYPE    213    106    168
D18V3, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              14               213
  CLUS_2               5               106
  CLUS_3               7               168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED       17      2      7      0
  SMARCA4 WILD-TYPE    192    134    151     13
D18V4, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              17               192
  CLUS_2               2               134
  CLUS_3               7               151
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        1      4      9      5
  SMARCA4 WILD-TYPE     90     91    117    112
D18V5, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                90
  CLUS_2               4                91
  CLUS_3               9               117
  CLUS_4               5               112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        3      7      9
  SMARCA4 WILD-TYPE     80    153    177
D18V6, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               3                80
  CLUS_2               7               153
  CLUS_3               9               177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA4 MUTATED        8      3      7      6      2
  SMARCA4 WILD-TYPE    122    112     99    129     28
D18V7, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               3               112
  CLUS_3               7                99
  CLUS_4               6               129
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA4 MUTATED       11      1      2      4      4      2      2
  SMARCA4 WILD-TYPE    124     70     34     64     87     39     72
D18V8, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              11               124
  CLUS_2               1                70
  CLUS_3               2                34
  CLUS_4               4                64
  CLUS_5               4                87
  CLUS_6               2                39
  CLUS_7               2                72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        8      2      6      9
  SMARCA4 WILD-TYPE    132    105     77    173
D18V9, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               8               132
  CLUS_2               2               105
  CLUS_3               6                77
  CLUS_4               9               173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       14      9      2
  SMARCA4 WILD-TYPE    209    177    101
D18V10, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              14               209
  CLUS_2               9               177
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        2      6     11      6
  SMARCA4 WILD-TYPE    125    113     95    150
D18V11, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               6               113
  CLUS_3              11                95
  CLUS_4               6               150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCA4 MUTATED        9      2      4      2      1      7
  SMARCA4 WILD-TYPE     90     75    116     55     62     85
D18V12, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               9                90
  CLUS_2               2                75
  CLUS_3               4               116
  CLUS_4               2                55
  CLUS_5               1                62
  CLUS_6               7                85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = NIPBL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        0      1      0
  NIPBL WILD-TYPE      9      9      8
D19V1, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        0      0      1      0
  NIPBL WILD-TYPE      7      7      6      6
D19V2, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        2      2     14
  NIPBL WILD-TYPE    225    109    161
D19V3, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             225
  CLUS_2             2             109
  CLUS_3            14             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        2      2     14      0
  NIPBL WILD-TYPE    207    134    144     13
D19V4, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             207
  CLUS_2             2             134
  CLUS_3            14             144
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        3      2      7      2
  NIPBL WILD-TYPE     88     93    119    115
D19V5, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3              88
  CLUS_2             2              93
  CLUS_3             7             119
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        5      3      6
  NIPBL WILD-TYPE     78    157    180
D19V6, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5              78
  CLUS_2             3             157
  CLUS_3             6             180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPBL MUTATED        1      3     10      2      2
  NIPBL WILD-TYPE    129    112     96    133     28
D19V7, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3             112
  CLUS_3            10              96
  CLUS_4             2             133
  CLUS_5             2              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPBL MUTATED        2      1      2      0     10      1      2
  NIPBL WILD-TYPE    133     70     34     68     81     40     72
D19V8, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             133
  CLUS_2             1              70
  CLUS_3             2              34
  CLUS_4             0              68
  CLUS_5            10              81
  CLUS_6             1              40
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        5      4      5      4
  NIPBL WILD-TYPE    135    103     78    178
D19V9, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5             135
  CLUS_2             4             103
  CLUS_3             5              78
  CLUS_4             4             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED       12      4      2
  NIPBL WILD-TYPE    211    182    101
D19V10, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            12             211
  CLUS_2             4             182
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        2      4      9      3
  NIPBL WILD-TYPE    125    115     97    153
D19V11, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4             115
  CLUS_3             9              97
  CLUS_4             3             153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NIPBL MUTATED        3      3      2      7      1      2
  NIPBL WILD-TYPE     96     74    118     50     62     90
D19V12, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3              96
  CLUS_2             3              74
  CLUS_3             2             118
  CLUS_4             7              50
  CLUS_5             1              62
  CLUS_6             2              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = TRERF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        0      0      0
  TRERF1 WILD-TYPE      9     10      8
D20V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        0      0      0      0
  TRERF1 WILD-TYPE      7      7      7      6
D20V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        4      1      1
  TRERF1 WILD-TYPE    223    110    174
D20V3, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              4              223
  CLUS_2              1              110
  CLUS_3              1              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        3      3      0      0
  TRERF1 WILD-TYPE    206    133    158     13
D20V4, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              3              206
  CLUS_2              3              133
  CLUS_3              0              158
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        2      0      1      2
  TRERF1 WILD-TYPE     89     95    125    115
D20V5, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2               89
  CLUS_2              0               95
  CLUS_3              1              125
  CLUS_4              2              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        2      2      1
  TRERF1 WILD-TYPE     81    158    185
D20V6, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2               81
  CLUS_2              2              158
  CLUS_3              1              185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRERF1 MUTATED        2      2      0      1      1
  TRERF1 WILD-TYPE    128    113    106    134     29
D20V7, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2              113
  CLUS_3              0              106
  CLUS_4              1              134
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRERF1 MUTATED        3      1      0      1      0      1      0
  TRERF1 WILD-TYPE    132     70     36     67     91     40     74
D20V8, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              1               67
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        1      3      0      2
  TRERF1 WILD-TYPE    139    104     83    180
D20V9, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              3              104
  CLUS_3              0               83
  CLUS_4              2              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        2      2      2
  TRERF1 WILD-TYPE    221    184    101
D20V10, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              221
  CLUS_2              2              184
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        1      1      0      4
  TRERF1 WILD-TYPE    126    118    106    152
D20V11, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              1              118
  CLUS_3              0              106
  CLUS_4              4              152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRERF1 MUTATED        1      1      2      0      0      2
  TRERF1 WILD-TYPE     98     76    118     57     63     90
D20V12, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              1               76
  CLUS_3              2              118
  CLUS_4              0               57
  CLUS_5              0               63
  CLUS_6              2               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = CREBZF MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      0      0
  CREBZF WILD-TYPE      9     10      8
D21V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      0      0      0
  CREBZF WILD-TYPE      7      7      7      6
D21V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      1      6
  CREBZF WILD-TYPE    227    110    169
D21V3, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              227
  CLUS_2              1              110
  CLUS_3              6              169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      2      5      0
  CREBZF WILD-TYPE    209    134    153     13
D21V4, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              209
  CLUS_2              2              134
  CLUS_3              5              153
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      2      1      4
  CREBZF WILD-TYPE     91     93    125    113
D21V5, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               91
  CLUS_2              2               93
  CLUS_3              1              125
  CLUS_4              4              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      6      1
  CREBZF WILD-TYPE     83    154    185
D21V6, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               83
  CLUS_2              6              154
  CLUS_3              1              185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBZF MUTATED        0      1      2      4      0
  CREBZF WILD-TYPE    130    114    104    131     30
D21V7, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              130
  CLUS_2              1              114
  CLUS_3              2              104
  CLUS_4              4              131
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CREBZF MUTATED        0      1      2      1      0      0      3
  CREBZF WILD-TYPE    135     70     34     67     91     41     71
D21V8, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              135
  CLUS_2              1               70
  CLUS_3              2               34
  CLUS_4              1               67
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      1      1      5
  CREBZF WILD-TYPE    140    106     82    177
D21V9, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              140
  CLUS_2              1              106
  CLUS_3              1               82
  CLUS_4              5              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      6      1
  CREBZF WILD-TYPE    223    180    102
D21V10, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              223
  CLUS_2              6              180
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      1      2      4
  CREBZF WILD-TYPE    127    118    104    152
D21V11, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              127
  CLUS_2              1              118
  CLUS_3              2              104
  CLUS_4              4              152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CREBZF MUTATED        0      1      4      0      0      2
  CREBZF WILD-TYPE     99     76    116     57     63     90
D21V12, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               99
  CLUS_2              1               76
  CLUS_3              4              116
  CLUS_4              0               57
  CLUS_5              0               63
  CLUS_6              2               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DNMT3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        0      0      0
  DNMT3A WILD-TYPE      9     10      8
D22V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      0      0      0
  DNMT3A WILD-TYPE      7      7      7      6
D22V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        5      2      4
  DNMT3A WILD-TYPE    222    109    171
D22V3, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              5              222
  CLUS_2              2              109
  CLUS_3              4              171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        4      4      3      0
  DNMT3A WILD-TYPE    205    132    155     13
D22V4, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              205
  CLUS_2              4              132
  CLUS_3              3              155
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        2      0      3      3
  DNMT3A WILD-TYPE     89     95    123    114
D22V5, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              2               89
  CLUS_2              0               95
  CLUS_3              3              123
  CLUS_4              3              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        0      5      3
  DNMT3A WILD-TYPE     83    155    183
D22V6, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               83
  CLUS_2              5              155
  CLUS_3              3              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3A MUTATED        4      2      3      2      0
  DNMT3A WILD-TYPE    126    113    103    133     30
D22V7, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2              113
  CLUS_3              3              103
  CLUS_4              2              133
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNMT3A MUTATED        3      1      1      2      1      1      2
  DNMT3A WILD-TYPE    132     70     35     66     90     40     72
D22V8, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              3              132
  CLUS_2              1               70
  CLUS_3              1               35
  CLUS_4              2               66
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              2               72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        1      2      1      7
  DNMT3A WILD-TYPE    139    105     82    175
D22V9, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1              139
  CLUS_2              2              105
  CLUS_3              1               82
  CLUS_4              7              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        1      6      4
  DNMT3A WILD-TYPE    222    180     99
D22V10, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1              222
  CLUS_2              6              180
  CLUS_3              4               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        3      1      3      4
  DNMT3A WILD-TYPE    124    118    103    152
D22V11, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              3              124
  CLUS_2              1              118
  CLUS_3              3              103
  CLUS_4              4              152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNMT3A MUTATED        1      1      3      1      1      4
  DNMT3A WILD-TYPE     98     76    117     56     62     88
D22V12, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1               98
  CLUS_2              1               76
  CLUS_3              3              117
  CLUS_4              1               56
  CLUS_5              1               62
  CLUS_6              4               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      0      0
  EMG1 WILD-TYPE      9     10      8
D23V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      0      0      0
  EMG1 WILD-TYPE      7      7      7      6
D23V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      1      3
  EMG1 WILD-TYPE    226    110    172
D23V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            226
  CLUS_2            1            110
  CLUS_3            3            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      0      3      0
  EMG1 WILD-TYPE    207    136    155     13
D23V4, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            207
  CLUS_2            0            136
  CLUS_3            3            155
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      0      2      2
  EMG1 WILD-TYPE     90     95    124    115
D23V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            0             95
  CLUS_3            2            124
  CLUS_4            2            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      1      3
  EMG1 WILD-TYPE     82    159    183
D23V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             82
  CLUS_2            1            159
  CLUS_3            3            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        1      0      2      1      1
  EMG1 WILD-TYPE    129    115    104    134     29
D23V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0            115
  CLUS_3            2            104
  CLUS_4            1            134
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        1      0      0      1      3      0      0
  EMG1 WILD-TYPE    134     71     36     67     88     41     74
D23V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            134
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             67
  CLUS_5            3             88
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      0      2      2
  EMG1 WILD-TYPE    139    107     81    180
D23V9, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            139
  CLUS_2            0            107
  CLUS_3            2             81
  CLUS_4            2            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        4      1      0
  EMG1 WILD-TYPE    219    185    103
D23V10, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            4            219
  CLUS_2            1            185
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      0      3      1
  EMG1 WILD-TYPE    126    119    103    155
D23V11, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            0            119
  CLUS_3            3            103
  CLUS_4            1            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EMG1 MUTATED        1      1      0      2      0      1
  EMG1 WILD-TYPE     98     76    120     55     63     91
D23V12, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             98
  CLUS_2            1             76
  CLUS_3            0            120
  CLUS_4            2             55
  CLUS_5            0             63
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        0      1      0
  IRS4 WILD-TYPE      9      9      8
D24V1, multiclass
[1] "Remove cluster labels:" "IRS4 MUTATED"          
clus
  IRS4 MUTATED IRS4 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      1      0      0
  IRS4 WILD-TYPE      7      6      7      6
D24V2, multiclass
[1] "Remove cluster labels:" "IRS4 MUTATED"          
clus
  IRS4 MUTATED IRS4 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        4      3      1
  IRS4 WILD-TYPE    223    108    174
D24V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4            223
  CLUS_2            3            108
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        4      3      1      0
  IRS4 WILD-TYPE    205    133    157     13
D24V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4            205
  CLUS_2            3            133
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      3      2      2
  IRS4 WILD-TYPE     91     92    124    115
D24V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0             91
  CLUS_2            3             92
  CLUS_3            2            124
  CLUS_4            2            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        1      1      5
  IRS4 WILD-TYPE     82    159    181
D24V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             82
  CLUS_2            1            159
  CLUS_3            5            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        2      4      0      2      0
  IRS4 WILD-TYPE    128    111    106    133     30
D24V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            4            111
  CLUS_3            0            106
  CLUS_4            2            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        3      0      1      1      0      3      0
  IRS4 WILD-TYPE    132     71     35     67     91     38     74
D24V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            132
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             67
  CLUS_5            0             91
  CLUS_6            3             38
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        1      4      0      3
  IRS4 WILD-TYPE    139    103     83    179
D24V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1            139
  CLUS_2            4            103
  CLUS_3            0             83
  CLUS_4            3            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      3      3
  IRS4 WILD-TYPE    221    183    100
D24V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            221
  CLUS_2            3            183
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      3      1      4
  IRS4 WILD-TYPE    127    116    105    152
D24V11, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            3            116
  CLUS_3            1            105
  CLUS_4            4            152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS4 MUTATED        1      3      1      0      1      2
  IRS4 WILD-TYPE     98     74    119     57     62     90
D24V12, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             98
  CLUS_2            3             74
  CLUS_3            1            119
  CLUS_4            0             57
  CLUS_5            1             62
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = MYST4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        0      1      0
  MYST4 WILD-TYPE      9      9      8
D25V1, multiclass
[1] "Remove cluster labels:" "MYST4 MUTATED"         
clus
  MYST4 MUTATED MYST4 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-DB-5270      TCGA-DB-5273 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        0      0      1      0
  MYST4 WILD-TYPE      7      7      6      6
D25V2, multiclass
[1] "Remove cluster labels:" "MYST4 MUTATED"         
clus
  MYST4 MUTATED MYST4 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-DB-5270      TCGA-DB-5273 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        0      5      6
  MYST4 WILD-TYPE    227    106    169
D25V3, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             0             227
  CLUS_2             5             106
  CLUS_3             6             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        2      2      7      0
  MYST4 WILD-TYPE    207    134    151     13
D25V4, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2             207
  CLUS_2             2             134
  CLUS_3             7             151
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        2      0      6      2
  MYST4 WILD-TYPE     89     95    120    115
D25V5, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             0              95
  CLUS_3             6             120
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        1      3      6
  MYST4 WILD-TYPE     82    157    180
D25V6, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             1              82
  CLUS_2             3             157
  CLUS_3             6             180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYST4 MUTATED        2      2      5      1      1
  MYST4 WILD-TYPE    128    113    101    134     29
D25V7, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2             113
  CLUS_3             5             101
  CLUS_4             1             134
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYST4 MUTATED        2      1      2      0      4      1      1
  MYST4 WILD-TYPE    133     70     34     68     87     40     73
D25V8, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             1              70
  CLUS_3             2              34
  CLUS_4             0              68
  CLUS_5             4              87
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        1      3      4      3
  MYST4 WILD-TYPE    139    104     79    179
D25V9, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             1             139
  CLUS_2             3             104
  CLUS_3             4              79
  CLUS_4             3             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        5      4      2
  MYST4 WILD-TYPE    218    182    101
D25V10, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             5             218
  CLUS_2             4             182
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        0      2      5      4
  MYST4 WILD-TYPE    127    117    101    152
D25V11, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2             117
  CLUS_3             5             101
  CLUS_4             4             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYST4 MUTATED        1      2      2      1      1      4
  MYST4 WILD-TYPE     98     75    118     56     62     88
D25V12, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             2              75
  CLUS_3             2             118
  CLUS_4             1              56
  CLUS_5             1              62
  CLUS_6             4              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = MED9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      0      0
  MED9 WILD-TYPE      9     10      8
D26V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        0      0      0      0
  MED9 WILD-TYPE      7      7      7      6
D26V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        1      1      1
  MED9 WILD-TYPE    226    110    174
D26V3, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            226
  CLUS_2            1            110
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      1      1      0
  MED9 WILD-TYPE    208    135    157     13
D26V4, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            208
  CLUS_2            1            135
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      0      2
  MED9 WILD-TYPE     90     95    126    115
D26V5, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            0             95
  CLUS_3            0            126
  CLUS_4            2            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        1      2      0
  MED9 WILD-TYPE     82    158    186
D26V6, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1             82
  CLUS_2            2            158
  CLUS_3            0            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED9 MUTATED        1      0      0      2      0
  MED9 WILD-TYPE    129    115    106    133     30
D26V7, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0            115
  CLUS_3            0            106
  CLUS_4            2            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED9 MUTATED        1      1      0      0      0      0      1
  MED9 WILD-TYPE    134     70     36     68     91     41     73
D26V8, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            134
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             68
  CLUS_5            0             91
  CLUS_6            0             41
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      0      2
  MED9 WILD-TYPE    139    107     83    180
D26V9, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            139
  CLUS_2            0            107
  CLUS_3            0             83
  CLUS_4            2            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        1      1      1
  MED9 WILD-TYPE    222    185    102
D26V10, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            222
  CLUS_2            1            185
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      1      0      1
  MED9 WILD-TYPE    126    118    106    155
D26V11, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1            118
  CLUS_3            0            106
  CLUS_4            1            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED9 MUTATED        0      0      1      0      1      1
  MED9 WILD-TYPE     99     77    119     57     62     91
D26V12, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            0             77
  CLUS_3            1            119
  CLUS_4            0             57
  CLUS_5            1             62
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = FAM47C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        0      0      0
  FAM47C WILD-TYPE      9     10      8
D27V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        0      0      0      0
  FAM47C WILD-TYPE      7      7      7      6
D27V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        8      3      8
  FAM47C WILD-TYPE    219    108    167
D27V3, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              8              219
  CLUS_2              3              108
  CLUS_3              8              167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        6      5      7      1
  FAM47C WILD-TYPE    203    131    151     12
D27V4, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              6              203
  CLUS_2              5              131
  CLUS_3              7              151
  CLUS_4              1               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        1      3      5      7
  FAM47C WILD-TYPE     90     92    121    110
D27V5, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               90
  CLUS_2              3               92
  CLUS_3              5              121
  CLUS_4              7              110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        5      7      4
  FAM47C WILD-TYPE     78    153    182
D27V6, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5               78
  CLUS_2              7              153
  CLUS_3              4              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        2      2      5      9      1
  FAM47C WILD-TYPE    128    113    101    126     29
D27V7, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2              113
  CLUS_3              5              101
  CLUS_4              9              126
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM47C MUTATED        0      2      0      5      5      1      6
  FAM47C WILD-TYPE    135     69     36     63     86     40     68
D27V8, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0              135
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              5               63
  CLUS_5              5               86
  CLUS_6              1               40
  CLUS_7              6               68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        3      4      2     10
  FAM47C WILD-TYPE    137    103     81    172
D27V9, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              137
  CLUS_2              4              103
  CLUS_3              2               81
  CLUS_4             10              172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        5     12      2
  FAM47C WILD-TYPE    218    174    101
D27V10, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5              218
  CLUS_2             12              174
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        0      2      4     13
  FAM47C WILD-TYPE    127    117    102    143
D27V11, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0              127
  CLUS_2              2              117
  CLUS_3              4              102
  CLUS_4             13              143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM47C MUTATED        0      1      8      1      1      8
  FAM47C WILD-TYPE     99     76    112     56     62     84
D27V12, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0               99
  CLUS_2              1               76
  CLUS_3              8              112
  CLUS_4              1               56
  CLUS_5              1               62
  CLUS_6              8               84
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        0      1      0
  NRAS WILD-TYPE      9      9      8
D28V1, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      1      0
  NRAS WILD-TYPE      7      7      6      6
D28V2, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        0      1      3
  NRAS WILD-TYPE    227    110    172
D28V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            227
  CLUS_2            1            110
  CLUS_3            3            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        1      0      3      0
  NRAS WILD-TYPE    208    136    155     13
D28V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            208
  CLUS_2            0            136
  CLUS_3            3            155
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        1      1      1      1
  NRAS WILD-TYPE     90     94    125    116
D28V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            1            125
  CLUS_4            1            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        2      1      1
  NRAS WILD-TYPE     81    159    185
D28V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2             81
  CLUS_2            1            159
  CLUS_3            1            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0      1      1      2      0
  NRAS WILD-TYPE    130    114    105    133     30
D28V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            130
  CLUS_2            1            114
  CLUS_3            1            105
  CLUS_4            2            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        0      0      1      1      0      1      1
  NRAS WILD-TYPE    135     71     35     67     91     40     73
D28V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            135
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             67
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      2      2
  NRAS WILD-TYPE    140    107     81    180
D28V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            140
  CLUS_2            0            107
  CLUS_3            2             81
  CLUS_4            2            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      2      1
  NRAS WILD-TYPE    222    184    102
D28V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            222
  CLUS_2            2            184
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      1      1      2
  NRAS WILD-TYPE    127    118    105    154
D28V11, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            127
  CLUS_2            1            118
  CLUS_3            1            105
  CLUS_4            2            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRAS MUTATED        0      2      1      0      0      1
  NRAS WILD-TYPE     99     75    119     57     63     91
D28V12, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             99
  CLUS_2            2             75
  CLUS_3            1            119
  CLUS_4            0             57
  CLUS_5            0             63
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = PLXNA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        0      1      0
  PLXNA3 WILD-TYPE      9      9      8
D29V1, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-DB-5270       TCGA-DB-5273 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        0      0      1      0
  PLXNA3 WILD-TYPE      7      7      6      6
D29V2, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-DB-5270       TCGA-DB-5273 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        3      3      3
  PLXNA3 WILD-TYPE    224    108    172
D29V3, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3              224
  CLUS_2              3              108
  CLUS_3              3              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        2      3      4      0
  PLXNA3 WILD-TYPE    207    133    154     13
D29V4, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              207
  CLUS_2              3              133
  CLUS_3              4              154
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        2      2      5      0
  PLXNA3 WILD-TYPE     89     93    121    117
D29V5, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               89
  CLUS_2              2               93
  CLUS_3              5              121
  CLUS_4              0              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        2      1      6
  PLXNA3 WILD-TYPE     81    159    180
D29V6, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               81
  CLUS_2              1              159
  CLUS_3              6              180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA3 MUTATED        2      3      3      0      1
  PLXNA3 WILD-TYPE    128    112    103    135     29
D29V7, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3              112
  CLUS_3              3              103
  CLUS_4              0              135
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLXNA3 MUTATED        2      2      0      0      4      1      0
  PLXNA3 WILD-TYPE    133     69     36     68     87     40     74
D29V8, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              133
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              0               68
  CLUS_5              4               87
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        3      3      2      1
  PLXNA3 WILD-TYPE    137    104     81    181
D29V9, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3              137
  CLUS_2              3              104
  CLUS_3              2               81
  CLUS_4              1              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        5      1      3
  PLXNA3 WILD-TYPE    218    185    100
D29V10, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              5              218
  CLUS_2              1              185
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        3      3      2      1
  PLXNA3 WILD-TYPE    124    116    104    155
D29V11, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              3              116
  CLUS_3              2              104
  CLUS_4              1              155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLXNA3 MUTATED        1      2      0      1      2      3
  PLXNA3 WILD-TYPE     98     75    120     56     61     89
D29V12, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              2               75
  CLUS_3              0              120
  CLUS_4              1               56
  CLUS_5              2               61
  CLUS_6              3               89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = TNRC18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        0      0      0
  TNRC18 WILD-TYPE      9     10      8
D30V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      0      0      0
  TNRC18 WILD-TYPE      7      7      7      6
D30V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        6      2      2
  TNRC18 WILD-TYPE    221    109    173
D30V3, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              6              221
  CLUS_2              2              109
  CLUS_3              2              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        5      4      1      0
  TNRC18 WILD-TYPE    204    132    157     13
D30V4, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              5              204
  CLUS_2              4              132
  CLUS_3              1              157
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      1      4      3
  TNRC18 WILD-TYPE     91     94    122    114
D30V5, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              1               94
  CLUS_3              4              122
  CLUS_4              3              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        0      3      5
  TNRC18 WILD-TYPE     83    157    181
D30V6, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               83
  CLUS_2              3              157
  CLUS_3              5              181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        3      3      0      4      0
  TNRC18 WILD-TYPE    127    112    106    131     30
D30V7, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3              112
  CLUS_3              0              106
  CLUS_4              4              131
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC18 MUTATED        3      2      0      2      0      1      2
  TNRC18 WILD-TYPE    132     69     36     66     91     40     72
D30V8, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              2               66
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              2               72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        4      2      0      4
  TNRC18 WILD-TYPE    136    105     83    178
D30V9, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              4              136
  CLUS_2              2              105
  CLUS_3              0               83
  CLUS_4              4              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        3      4      3
  TNRC18 WILD-TYPE    220    182    100
D30V10, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              3              220
  CLUS_2              4              182
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        4      2      0      3
  TNRC18 WILD-TYPE    123    117    106    153
D30V11, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              2              117
  CLUS_3              0              106
  CLUS_4              3              153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNRC18 MUTATED        1      1      4      0      1      2
  TNRC18 WILD-TYPE     98     76    116     57     62     90
D30V12, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              1               76
  CLUS_3              4              116
  CLUS_4              0               57
  CLUS_5              1               62
  CLUS_6              2               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = HTRA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        0      0      0
  HTRA2 WILD-TYPE      9     10      8
D31V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        0      0      0      0
  HTRA2 WILD-TYPE      7      7      7      6
D31V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        4      0      1
  HTRA2 WILD-TYPE    223    111    174
D31V3, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             4             223
  CLUS_2             0             111
  CLUS_3             1             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        3      1      1      0
  HTRA2 WILD-TYPE    206    135    157     13
D31V4, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             206
  CLUS_2             1             135
  CLUS_3             1             157
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        1      1      1      1
  HTRA2 WILD-TYPE     90     94    125    116
D31V5, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             1              94
  CLUS_3             1             125
  CLUS_4             1             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        1      1      2
  HTRA2 WILD-TYPE     82    159    184
D31V6, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             1              82
  CLUS_2             1             159
  CLUS_3             2             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTRA2 MUTATED        2      1      1      1      0
  HTRA2 WILD-TYPE    128    114    105    134     30
D31V7, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1             114
  CLUS_3             1             105
  CLUS_4             1             134
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTRA2 MUTATED        2      1      1      0      0      0      1
  HTRA2 WILD-TYPE    133     70     35     68     91     41     73
D31V8, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             1              70
  CLUS_3             1              35
  CLUS_4             0              68
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        3      0      1      1
  HTRA2 WILD-TYPE    137    107     82    181
D31V9, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             137
  CLUS_2             0             107
  CLUS_3             1              82
  CLUS_4             1             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        3      2      0
  HTRA2 WILD-TYPE    220    184    103
D31V10, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             220
  CLUS_2             2             184
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        1      2      0      1
  HTRA2 WILD-TYPE    126    117    106    155
D31V11, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2             117
  CLUS_3             0             106
  CLUS_4             1             155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTRA2 MUTATED        2      1      1      0      0      0
  HTRA2 WILD-TYPE     97     76    119     57     63     92
D31V12, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2              97
  CLUS_2             1              76
  CLUS_3             1             119
  CLUS_4             0              57
  CLUS_5             0              63
  CLUS_6             0              92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = ZMIZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        0      0      0
  ZMIZ1 WILD-TYPE      9     10      8
D32V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      0      0      0
  ZMIZ1 WILD-TYPE      7      7      7      6
D32V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      3      5
  ZMIZ1 WILD-TYPE    226    108    170
D32V3, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             226
  CLUS_2             3             108
  CLUS_3             5             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      2      5      0
  ZMIZ1 WILD-TYPE    207    134    153     13
D32V4, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2             207
  CLUS_2             2             134
  CLUS_3             5             153
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      0      2      5
  ZMIZ1 WILD-TYPE     89     95    124    112
D32V5, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             0              95
  CLUS_3             2             124
  CLUS_4             5             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      6      2
  ZMIZ1 WILD-TYPE     82    154    184
D32V6, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              82
  CLUS_2             6             154
  CLUS_3             2             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        1      1      3      3      1
  ZMIZ1 WILD-TYPE    129    114    103    132     29
D32V7, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1             114
  CLUS_3             3             103
  CLUS_4             3             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMIZ1 MUTATED        1      0      0      2      4      1      1
  ZMIZ1 WILD-TYPE    134     71     36     66     87     40     73
D32V8, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             2              66
  CLUS_5             4              87
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        1      2      3      3
  ZMIZ1 WILD-TYPE    139    105     80    179
D32V9, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             139
  CLUS_2             2             105
  CLUS_3             3              80
  CLUS_4             3             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        5      2      2
  ZMIZ1 WILD-TYPE    218    184    101
D32V10, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             5             218
  CLUS_2             2             184
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      1      4      4
  ZMIZ1 WILD-TYPE    127    118    102    152
D32V11, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             1             118
  CLUS_3             4             102
  CLUS_4             4             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMIZ1 MUTATED        0      1      1      3      1      3
  ZMIZ1 WILD-TYPE     99     76    119     54     62     89
D32V12, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0              99
  CLUS_2             1              76
  CLUS_3             1             119
  CLUS_4             3              54
  CLUS_5             1              62
  CLUS_6             3              89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = CUL4B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        0      0      0
  CUL4B WILD-TYPE      9     10      8
D33V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        0      0      0      0
  CUL4B WILD-TYPE      7      7      7      6
D33V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        3      3      4
  CUL4B WILD-TYPE    224    108    171
D33V3, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             3             224
  CLUS_2             3             108
  CLUS_3             4             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        2      4      3      1
  CUL4B WILD-TYPE    207    132    155     12
D33V4, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2             207
  CLUS_2             4             132
  CLUS_3             3             155
  CLUS_4             1              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        2      3      2      0
  CUL4B WILD-TYPE     89     92    124    117
D33V5, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2              89
  CLUS_2             3              92
  CLUS_3             2             124
  CLUS_4             0             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      1      5
  CUL4B WILD-TYPE     82    159    181
D33V6, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              82
  CLUS_2             1             159
  CLUS_3             5             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL4B MUTATED        1      6      2      1      0
  CUL4B WILD-TYPE    129    109    104    134     30
D33V7, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             129
  CLUS_2             6             109
  CLUS_3             2             104
  CLUS_4             1             134
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL4B MUTATED        1      3      1      0      1      3      1
  CUL4B WILD-TYPE    134     68     35     68     90     38     73
D33V8, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             134
  CLUS_2             3              68
  CLUS_3             1              35
  CLUS_4             0              68
  CLUS_5             1              90
  CLUS_6             3              38
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      5      1      3
  CUL4B WILD-TYPE    139    102     82    179
D33V9, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             139
  CLUS_2             5             102
  CLUS_3             1              82
  CLUS_4             3             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      3      6
  CUL4B WILD-TYPE    222    183     97
D33V10, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             222
  CLUS_2             3             183
  CLUS_3             6              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      6      0      3
  CUL4B WILD-TYPE    126    113    106    153
D33V11, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6             113
  CLUS_3             0             106
  CLUS_4             3             153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUL4B MUTATED        1      4      2      0      2      1
  CUL4B WILD-TYPE     98     73    118     57     61     91
D33V12, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              98
  CLUS_2             4              73
  CLUS_3             2             118
  CLUS_4             0              57
  CLUS_5             2              61
  CLUS_6             1              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DLX6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLX6 MUTATED        0      0      0
  DLX6 WILD-TYPE      9     10      8
D34V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        0      0      0      0
  DLX6 WILD-TYPE      7      7      7      6
D34V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLX6 MUTATED        2      1      1
  DLX6 WILD-TYPE    225    110    174
D34V3, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            2            225
  CLUS_2            1            110
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        1      2      1      0
  DLX6 WILD-TYPE    208    134    157     13
D34V4, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            1            208
  CLUS_2            2            134
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        1      0      1      2
  DLX6 WILD-TYPE     90     95    125    115
D34V5, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            0             95
  CLUS_3            1            125
  CLUS_4            2            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLX6 MUTATED        2      1      1
  DLX6 WILD-TYPE     81    159    185
D34V6, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            2             81
  CLUS_2            1            159
  CLUS_3            1            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLX6 MUTATED        1      1      1      0      1
  DLX6 WILD-TYPE    129    114    105    135     29
D34V7, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1            114
  CLUS_3            1            105
  CLUS_4            0            135
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLX6 MUTATED        0      1      0      1      0      1      1
  DLX6 WILD-TYPE    135     70     36     67     91     40     73
D34V8, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0            135
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            1             67
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        0      1      0      3
  DLX6 WILD-TYPE    140    106     83    179
D34V9, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0            140
  CLUS_2            1            106
  CLUS_3            0             83
  CLUS_4            3            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLX6 MUTATED        0      2      2
  DLX6 WILD-TYPE    223    184    101
D34V10, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0            223
  CLUS_2            2            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        0      0      0      4
  DLX6 WILD-TYPE    127    119    106    152
D34V11, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            0            119
  CLUS_3            0            106
  CLUS_4            4            152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLX6 MUTATED        0      0      2      0      0      2
  DLX6 WILD-TYPE     99     77    118     57     63     90
D34V12, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            0             77
  CLUS_3            2            118
  CLUS_4            0             57
  CLUS_5            0             63
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      0      0
  RB1 WILD-TYPE      9     10      8
D35V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      0      0      0
  RB1 WILD-TYPE      7      7      7      6
D35V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      4      1
  RB1 WILD-TYPE    226    107    174
D35V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1           226
  CLUS_2           4           107
  CLUS_3           1           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      5      1      0
  RB1 WILD-TYPE    209    131    157     13
D35V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           209
  CLUS_2           5           131
  CLUS_3           1           157
  CLUS_4           0            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        1      2      1      1
  RB1 WILD-TYPE     90     93    125    116
D35V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            90
  CLUS_2           2            93
  CLUS_3           1           125
  CLUS_4           1           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      1      3
  RB1 WILD-TYPE     82    159    183
D35V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            82
  CLUS_2           1           159
  CLUS_3           3           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        0      5      0      0      1
  RB1 WILD-TYPE    130    110    106    135     29
D35V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           130
  CLUS_2           5           110
  CLUS_3           0           106
  CLUS_4           0           135
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RB1 MUTATED        0      3      0      1      1      1      0
  RB1 WILD-TYPE    135     68     36     67     90     40     74
D35V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           135
  CLUS_2           3            68
  CLUS_3           0            36
  CLUS_4           1            67
  CLUS_5           1            90
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      1      1      1
  RB1 WILD-TYPE    137    106     82    181
D35V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           137
  CLUS_2           1           106
  CLUS_3           1            82
  CLUS_4           1           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      1      4
  RB1 WILD-TYPE    222    185     99
D35V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1           222
  CLUS_2           1           185
  CLUS_3           4            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        2      2      0      2
  RB1 WILD-TYPE    125    117    106    154
D35V11, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2           125
  CLUS_2           2           117
  CLUS_3           0           106
  CLUS_4           2           154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RB1 MUTATED        0      0      1      1      3      1
  RB1 WILD-TYPE     99     77    119     56     60     91
D35V12, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            99
  CLUS_2           0            77
  CLUS_3           1           119
  CLUS_4           1            56
  CLUS_5           3            60
  CLUS_6           1            91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = ROBO3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        0      0      0
  ROBO3 WILD-TYPE      9     10      8
D36V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        0      0      0      0
  ROBO3 WILD-TYPE      7      7      7      6
D36V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        3      0      2
  ROBO3 WILD-TYPE    224    111    173
D36V3, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             3             224
  CLUS_2             0             111
  CLUS_3             2             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        3      0      2      0
  ROBO3 WILD-TYPE    206    136    156     13
D36V4, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             3             206
  CLUS_2             0             136
  CLUS_3             2             156
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        1      0      2      1
  ROBO3 WILD-TYPE     90     95    124    116
D36V5, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             0              95
  CLUS_3             2             124
  CLUS_4             1             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        0      1      3
  ROBO3 WILD-TYPE     83    159    183
D36V6, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             0              83
  CLUS_2             1             159
  CLUS_3             3             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO3 MUTATED        2      0      1      2      0
  ROBO3 WILD-TYPE    128    115    105    133     30
D36V7, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0             115
  CLUS_3             1             105
  CLUS_4             2             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ROBO3 MUTATED        2      0      1      1      1      0      0
  ROBO3 WILD-TYPE    133     71     35     67     90     41     74
D36V8, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             1              67
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        1      1      1      2
  ROBO3 WILD-TYPE    139    106     82    180
D36V9, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1             139
  CLUS_2             1             106
  CLUS_3             1              82
  CLUS_4             2             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        4      1      0
  ROBO3 WILD-TYPE    219    185    103
D36V10, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             4             219
  CLUS_2             1             185
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        2      1      1      1
  ROBO3 WILD-TYPE    125    118    105    155
D36V11, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             1             118
  CLUS_3             1             105
  CLUS_4             1             155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ROBO3 MUTATED        1      1      1      1      0      1
  ROBO3 WILD-TYPE     98     76    119     56     63     91
D36V12, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             1              76
  CLUS_3             1             119
  CLUS_4             1              56
  CLUS_5             0              63
  CLUS_6             1              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = SRPX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        0      1      0
  SRPX WILD-TYPE      9      9      8
D37V1, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      0      1      0
  SRPX WILD-TYPE      7      7      6      6
D37V2, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        0      2      2
  SRPX WILD-TYPE    227    109    173
D37V3, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            227
  CLUS_2            2            109
  CLUS_3            2            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      2      2      0
  SRPX WILD-TYPE    209    134    156     13
D37V4, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            209
  CLUS_2            2            134
  CLUS_3            2            156
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        1      1      2      0
  SRPX WILD-TYPE     90     94    124    117
D37V5, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            2            124
  CLUS_4            0            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      0      3
  SRPX WILD-TYPE     82    160    183
D37V6, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             82
  CLUS_2            0            160
  CLUS_3            3            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        0      2      2      0      0
  SRPX WILD-TYPE    130    113    104    135     30
D37V7, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            130
  CLUS_2            2            113
  CLUS_3            2            104
  CLUS_4            0            135
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRPX MUTATED        0      2      1      0      1      0      0
  SRPX WILD-TYPE    135     69     35     68     90     41     74
D37V8, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            135
  CLUS_2            2             69
  CLUS_3            1             35
  CLUS_4            0             68
  CLUS_5            1             90
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        2      1      1      0
  SRPX WILD-TYPE    138    106     82    182
D37V9, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            138
  CLUS_2            1            106
  CLUS_3            1             82
  CLUS_4            0            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      0      2
  SRPX WILD-TYPE    221    186    101
D37V10, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            221
  CLUS_2            0            186
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        2      1      1      0
  SRPX WILD-TYPE    125    118    105    156
D37V11, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            125
  CLUS_2            1            118
  CLUS_3            1            105
  CLUS_4            0            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRPX MUTATED        0      0      0      2      2      0
  SRPX WILD-TYPE     99     77    120     55     61     92
D37V12, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0             99
  CLUS_2            0             77
  CLUS_3            0            120
  CLUS_4            2             55
  CLUS_5            2             61
  CLUS_6            0             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = RBPJ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      0      0
  RBPJ WILD-TYPE      9     10      8
D38V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      0      0      0
  RBPJ WILD-TYPE      7      7      7      6
D38V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        2      0      5
  RBPJ WILD-TYPE    225    111    170
D38V3, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            2            225
  CLUS_2            0            111
  CLUS_3            5            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      1      5      1
  RBPJ WILD-TYPE    209    135    153     12
D38V4, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            209
  CLUS_2            1            135
  CLUS_3            5            153
  CLUS_4            1             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      3      2      0
  RBPJ WILD-TYPE     91     92    124    117
D38V5, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             91
  CLUS_2            3             92
  CLUS_3            2            124
  CLUS_4            0            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      0      5
  RBPJ WILD-TYPE     83    160    181
D38V6, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             83
  CLUS_2            0            160
  CLUS_3            5            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBPJ MUTATED        0      2      3      2      0
  RBPJ WILD-TYPE    130    113    103    133     30
D38V7, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            130
  CLUS_2            2            113
  CLUS_3            3            103
  CLUS_4            2            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBPJ MUTATED        0      0      4      0      1      2      0
  RBPJ WILD-TYPE    135     71     32     68     90     39     74
D38V8, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            135
  CLUS_2            0             71
  CLUS_3            4             32
  CLUS_4            0             68
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      2      1      4
  RBPJ WILD-TYPE    140    105     82    178
D38V9, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            140
  CLUS_2            2            105
  CLUS_3            1             82
  CLUS_4            4            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      5      2
  RBPJ WILD-TYPE    223    181    101
D38V10, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            223
  CLUS_2            5            181
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        1      2      0      4
  RBPJ WILD-TYPE    126    117    106    152
D38V11, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            1            126
  CLUS_2            2            117
  CLUS_3            0            106
  CLUS_4            4            152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBPJ MUTATED        0      3      2      0      0      2
  RBPJ WILD-TYPE     99     74    118     57     63     90
D38V12, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             99
  CLUS_2            3             74
  CLUS_3            2            118
  CLUS_4            0             57
  CLUS_5            0             63
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = TMEM216 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      0      0
  TMEM216 WILD-TYPE      9     10      8
D39V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      0      0      0
  TMEM216 WILD-TYPE      7      7      7      6
D39V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      1      2
  TMEM216 WILD-TYPE    227    110    173
D39V3, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0               227
  CLUS_2               1               110
  CLUS_3               2               173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        2      0      1      0
  TMEM216 WILD-TYPE    207    136    157     13
D39V4, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               2               207
  CLUS_2               0               136
  CLUS_3               1               157
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        1      1      0      1
  TMEM216 WILD-TYPE     90     94    126    116
D39V5, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1                90
  CLUS_2               1                94
  CLUS_3               0               126
  CLUS_4               1               116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      2      1
  TMEM216 WILD-TYPE     83    158    185
D39V6, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0                83
  CLUS_2               2               158
  CLUS_3               1               185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM216 MUTATED        1      0      1      1      0
  TMEM216 WILD-TYPE    129    115    105    134     30
D39V7, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               0               115
  CLUS_3               1               105
  CLUS_4               1               134
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM216 MUTATED        1      0      1      0      0      0      1
  TMEM216 WILD-TYPE    134     71     35     68     91     41     73
D39V8, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               134
  CLUS_2               0                71
  CLUS_3               1                35
  CLUS_4               0                68
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      1      1      1
  TMEM216 WILD-TYPE    140    106     82    181
D39V9, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0               140
  CLUS_2               1               106
  CLUS_3               1                82
  CLUS_4               1               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        1      2      0
  TMEM216 WILD-TYPE    222    184    103
D39V10, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               222
  CLUS_2               2               184
  CLUS_3               0               103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      2      0      1
  TMEM216 WILD-TYPE    127    117    106    155
D39V11, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               2               117
  CLUS_3               0               106
  CLUS_4               1               155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM216 MUTATED        0      1      1      0      0      1
  TMEM216 WILD-TYPE     99     76    119     57     63     91
D39V12, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0                99
  CLUS_2               1                76
  CLUS_3               1               119
  CLUS_4               0                57
  CLUS_5               0                63
  CLUS_6               1                91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = ARID2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        1      0      0
  ARID2 WILD-TYPE      8     10      8
D40V1, multiclass
[1] "Remove cluster labels:" "ARID2 MUTATED"         
clus
  ARID2 MUTATED ARID2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5304      TCGA-E1-5311 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      0      0      0
  ARID2 WILD-TYPE      6      7      7      6
D40V2, multiclass
[1] "Remove cluster labels:" "ARID2 MUTATED"         
clus
  ARID2 MUTATED ARID2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5304      TCGA-E1-5311 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        5      3      3
  ARID2 WILD-TYPE    222    108    172
D40V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             5             222
  CLUS_2             3             108
  CLUS_3             3             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        4      4      2      1
  ARID2 WILD-TYPE    205    132    156     12
D40V4, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4             205
  CLUS_2             4             132
  CLUS_3             2             156
  CLUS_4             1              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      3      2      2
  ARID2 WILD-TYPE     90     92    124    115
D40V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             3              92
  CLUS_3             2             124
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        1      2      5
  ARID2 WILD-TYPE     82    158    181
D40V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              82
  CLUS_2             2             158
  CLUS_3             5             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        3      4      2      1      1
  ARID2 WILD-TYPE    127    111    104    134     29
D40V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             4             111
  CLUS_3             2             104
  CLUS_4             1             134
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID2 MUTATED        3      2      1      1      2      2      0
  ARID2 WILD-TYPE    132     69     35     67     89     39     74
D40V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             132
  CLUS_2             2              69
  CLUS_3             1              35
  CLUS_4             1              67
  CLUS_5             2              89
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        2      4      1      3
  ARID2 WILD-TYPE    138    103     82    179
D40V9, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2             138
  CLUS_2             4             103
  CLUS_3             1              82
  CLUS_4             3             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        3      3      4
  ARID2 WILD-TYPE    220    183     99
D40V10, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             220
  CLUS_2             3             183
  CLUS_3             4              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        2      3      1      4
  ARID2 WILD-TYPE    125    116    105    152
D40V11, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3             116
  CLUS_3             1             105
  CLUS_4             4             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID2 MUTATED        1      1      3      1      1      3
  ARID2 WILD-TYPE     98     76    117     56     62     89
D40V12, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             1              76
  CLUS_3             3             117
  CLUS_4             1              56
  CLUS_5             1              62
  CLUS_6             3              89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = SLC6A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      0      0
  SLC6A3 WILD-TYPE      9     10      8
D41V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      0      0      0
  SLC6A3 WILD-TYPE      7      7      7      6
D41V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        3      4      2
  SLC6A3 WILD-TYPE    224    107    173
D41V3, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              224
  CLUS_2              4              107
  CLUS_3              2              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        4      2      3      0
  SLC6A3 WILD-TYPE    205    134    155     13
D41V4, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              4              205
  CLUS_2              2              134
  CLUS_3              3              155
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      2      4      1
  SLC6A3 WILD-TYPE     91     93    122    116
D41V5, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              2               93
  CLUS_3              4              122
  CLUS_4              1              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      0      7
  SLC6A3 WILD-TYPE     83    160    179
D41V6, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               83
  CLUS_2              0              160
  CLUS_3              7              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A3 MUTATED        3      2      3      1      0
  SLC6A3 WILD-TYPE    127    113    103    134     30
D41V7, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2              113
  CLUS_3              3              103
  CLUS_4              1              134
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A3 MUTATED        3      1      2      1      1      1      0
  SLC6A3 WILD-TYPE    132     70     34     67     90     40     74
D41V8, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              1               70
  CLUS_3              2               34
  CLUS_4              1               67
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        2      4      2      1
  SLC6A3 WILD-TYPE    138    103     81    181
D41V9, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              2              138
  CLUS_2              4              103
  CLUS_3              2               81
  CLUS_4              1              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        4      2      3
  SLC6A3 WILD-TYPE    219    184    100
D41V10, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              4              219
  CLUS_2              2              184
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        2      1      2      4
  SLC6A3 WILD-TYPE    125    118    104    152
D41V11, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              1              118
  CLUS_3              2              104
  CLUS_4              4              152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC6A3 MUTATED        3      0      1      0      1      4
  SLC6A3 WILD-TYPE     96     77    119     57     62     88
D41V12, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3               96
  CLUS_2              0               77
  CLUS_3              1              119
  CLUS_4              0               57
  CLUS_5              1               62
  CLUS_6              4               88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = PDGFRA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        0      0      0
  PDGFRA WILD-TYPE      9     10      8
D42V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        0      0      0      0
  PDGFRA WILD-TYPE      7      7      7      6
D42V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        4      4      2
  PDGFRA WILD-TYPE    223    107    173
D42V3, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              4              223
  CLUS_2              4              107
  CLUS_3              2              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        1      4      2      3
  PDGFRA WILD-TYPE    208    132    156     10
D42V4, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1              208
  CLUS_2              4              132
  CLUS_3              2              156
  CLUS_4              3               10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        2      4      2      0
  PDGFRA WILD-TYPE     89     91    124    117
D42V5, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              2               89
  CLUS_2              4               91
  CLUS_3              2              124
  CLUS_4              0              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        1      1      6
  PDGFRA WILD-TYPE     82    159    180
D42V6, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1               82
  CLUS_2              1              159
  CLUS_3              6              180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDGFRA MUTATED        1      7      2      0      0
  PDGFRA WILD-TYPE    129    108    104    135     30
D42V7, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1              129
  CLUS_2              7              108
  CLUS_3              2              104
  CLUS_4              0              135
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDGFRA MUTATED        0      3      1      0      1      5      0
  PDGFRA WILD-TYPE    135     68     35     68     90     36     74
D42V8, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              0              135
  CLUS_2              3               68
  CLUS_3              1               35
  CLUS_4              0               68
  CLUS_5              1               90
  CLUS_6              5               36
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        1      7      2      0
  PDGFRA WILD-TYPE    139    100     81    182
D42V9, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1              139
  CLUS_2              7              100
  CLUS_3              2               81
  CLUS_4              0              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        2      1      7
  PDGFRA WILD-TYPE    221    185     96
D42V10, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              2              221
  CLUS_2              1              185
  CLUS_3              7               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        3      3      2      2
  PDGFRA WILD-TYPE    124    116    104    154
D42V11, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3              124
  CLUS_2              3              116
  CLUS_3              2              104
  CLUS_4              2              154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDGFRA MUTATED        0      5      1      1      1      2
  PDGFRA WILD-TYPE     99     72    119     56     62     90
D42V12, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              0               99
  CLUS_2              5               72
  CLUS_3              1              119
  CLUS_4              1               56
  CLUS_5              1               62
  CLUS_6              2               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = PTPN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        0      0      1
  PTPN11 WILD-TYPE      9     10      7
D43V1, multiclass
[1] "Remove cluster labels:" "PTPN11 MUTATED"        
clus
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      0      0      0
  PTPN11 WILD-TYPE      6      7      7      6
D43V2, multiclass
[1] "Remove cluster labels:" "PTPN11 MUTATED"        
clus
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        4      3      0
  PTPN11 WILD-TYPE    223    108    175
D43V3, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              4              223
  CLUS_2              3              108
  CLUS_3              0              175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      5      1      0
  PTPN11 WILD-TYPE    208    131    157     13
D43V4, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              208
  CLUS_2              5              131
  CLUS_3              1              157
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      2      2      0
  PTPN11 WILD-TYPE     90     93    124    117
D43V5, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              2               93
  CLUS_3              2              124
  CLUS_4              0              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        1      1      3
  PTPN11 WILD-TYPE     82    159    183
D43V6, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               82
  CLUS_2              1              159
  CLUS_3              3              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN11 MUTATED        1      5      0      1      0
  PTPN11 WILD-TYPE    129    110    106    134     30
D43V7, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              5              110
  CLUS_3              0              106
  CLUS_4              1              134
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN11 MUTATED        1      3      0      2      0      0      1
  PTPN11 WILD-TYPE    134     68     36     66     91     41     73
D43V8, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              134
  CLUS_2              3               68
  CLUS_3              0               36
  CLUS_4              2               66
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        3      3      0      1
  PTPN11 WILD-TYPE    137    104     83    181
D43V9, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              3              137
  CLUS_2              3              104
  CLUS_3              0               83
  CLUS_4              1              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        1      1      5
  PTPN11 WILD-TYPE    222    185     98
D43V10, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              222
  CLUS_2              1              185
  CLUS_3              5               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        4      2      0      1
  PTPN11 WILD-TYPE    123    117    106    155
D43V11, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              2              117
  CLUS_3              0              106
  CLUS_4              1              155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN11 MUTATED        1      0      1      0      5      0
  PTPN11 WILD-TYPE     98     77    119     57     58     92
D43V12, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              0               77
  CLUS_3              1              119
  CLUS_4              0               57
  CLUS_5              5               58
  CLUS_6              0               92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = MYT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        0      0      0
  MYT1 WILD-TYPE      9     10      8
D44V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      0      0      0
  MYT1 WILD-TYPE      7      7      7      6
D44V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        5      1      0
  MYT1 WILD-TYPE    222    110    175
D44V3, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            5            222
  CLUS_2            1            110
  CLUS_3            0            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        2      4      0      0
  MYT1 WILD-TYPE    207    132    158     13
D44V4, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            207
  CLUS_2            4            132
  CLUS_3            0            158
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      0      1      1
  MYT1 WILD-TYPE     91     95    125    116
D44V5, multiclass
[1] "Remove cluster labels:" "MYT1 MUTATED"          
clus
  MYT1 MUTATED MYT1 WILD-TYPE 
             2            427 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8019     TCGA-HT-8104 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HT-A614 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617     TCGA-HT-A618 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A74H 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O     TCGA-HW-7486 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-KT-A74X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X     TCGA-P5-A72Z 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733     TCGA-P5-A735 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W     TCGA-P5-A77X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S     TCGA-QH-A65V 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML     TCGA-R8-A6MO 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y     TCGA-RY-A83Z 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS     TCGA-S9-A6TU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6U0 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6     TCGA-S9-A6U9 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ     TCGA-S9-A7J0 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX     TCGA-S9-A7QZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8     TCGA-TM-A7C5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF     TCGA-TQ-A7RG 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN     TCGA-TQ-A7RQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV     TCGA-TQ-A7RW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9     TCGA-VM-A8CA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE     TCGA-VM-A8CH 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS     TCGA-W9-A837 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        0      1      1
  MYT1 WILD-TYPE     83    159    185
D44V6, multiclass
[1] "Remove cluster labels:" "MYT1 MUTATED"          
clus
  MYT1 MUTATED MYT1 WILD-TYPE 
             2            427 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8019     TCGA-HT-8104 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HT-A614 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617     TCGA-HT-A618 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A74H 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O     TCGA-HW-7486 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-KT-A74X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X     TCGA-P5-A72Z 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733     TCGA-P5-A735 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W     TCGA-P5-A77X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S     TCGA-QH-A65V 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML     TCGA-R8-A6MO 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y     TCGA-RY-A83Z 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS     TCGA-S9-A6TU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6U0 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6     TCGA-S9-A6U9 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ     TCGA-S9-A7J0 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX     TCGA-S9-A7QZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8     TCGA-TM-A7C5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF     TCGA-TQ-A7RG 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN     TCGA-TQ-A7RQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV     TCGA-TQ-A7RW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9     TCGA-VM-A8CA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE     TCGA-VM-A8CH 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS     TCGA-W9-A837 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYT1 MUTATED        2      3      0      1      0
  MYT1 WILD-TYPE    128    112    106    134     30
D44V7, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3            112
  CLUS_3            0            106
  CLUS_4            1            134
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYT1 MUTATED        2      0      0      1      0      3      0
  MYT1 WILD-TYPE    133     71     36     67     91     38     74
D44V8, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            133
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             67
  CLUS_5            0             91
  CLUS_6            3             38
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      2      1      3
  MYT1 WILD-TYPE    140    105     82    179
D44V9, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            0            140
  CLUS_2            2            105
  CLUS_3            1             82
  CLUS_4            3            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        2      2      2
  MYT1 WILD-TYPE    221    184    101
D44V10, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            221
  CLUS_2            2            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        1      1      1      3
  MYT1 WILD-TYPE    126    118    105    153
D44V11, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1            118
  CLUS_3            1            105
  CLUS_4            3            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYT1 MUTATED        2      1      2      0      0      1
  MYT1 WILD-TYPE     97     76    118     57     63     91
D44V12, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2             97
  CLUS_2            1             76
  CLUS_3            2            118
  CLUS_4            0             57
  CLUS_5            0             63
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = ZNF292 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        1      0      0
  ZNF292 WILD-TYPE      8     10      8
D45V1, multiclass
[1] "Remove cluster labels:" "ZNF292 MUTATED"        
clus
  ZNF292 MUTATED ZNF292 WILD-TYPE 
               1               26 
      TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390       TCGA-CS-5394 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        1      0      0      0
  ZNF292 WILD-TYPE      6      7      7      6
D45V2, multiclass
[1] "Remove cluster labels:" "ZNF292 MUTATED"        
clus
  ZNF292 MUTATED ZNF292 WILD-TYPE 
               1               26 
      TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390       TCGA-CS-5394 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        2      4      8
  ZNF292 WILD-TYPE    225    107    167
D45V3, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2              225
  CLUS_2              4              107
  CLUS_3              8              167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        3      2      8      1
  ZNF292 WILD-TYPE    206    134    150     12
D45V4, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3              206
  CLUS_2              2              134
  CLUS_3              8              150
  CLUS_4              1               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        1      3      4      6
  ZNF292 WILD-TYPE     90     92    122    111
D45V5, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              3               92
  CLUS_3              4              122
  CLUS_4              6              111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        1      7      6
  ZNF292 WILD-TYPE     82    153    180
D45V6, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              1               82
  CLUS_2              7              153
  CLUS_3              6              180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        3      2      5      4      0
  ZNF292 WILD-TYPE    127    113    101    131     30
D45V7, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2              113
  CLUS_3              5              101
  CLUS_4              4              131
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF292 MUTATED        3      0      3      0      2      2      4
  ZNF292 WILD-TYPE    132     71     33     68     89     39     70
D45V8, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              0               71
  CLUS_3              3               33
  CLUS_4              0               68
  CLUS_5              2               89
  CLUS_6              2               39
  CLUS_7              4               70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        2      3      1      8
  ZNF292 WILD-TYPE    138    104     82    174
D45V9, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2              138
  CLUS_2              3              104
  CLUS_3              1               82
  CLUS_4              8              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        4      8      2
  ZNF292 WILD-TYPE    219    178    101
D45V10, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              4              219
  CLUS_2              8              178
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        1      2      3      8
  ZNF292 WILD-TYPE    126    117    103    148
D45V11, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2              117
  CLUS_3              3              103
  CLUS_4              8              148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF292 MUTATED        0      2      5      1      0      6
  ZNF292 WILD-TYPE     99     75    115     56     63     86
D45V12, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              0               99
  CLUS_2              2               75
  CLUS_3              5              115
  CLUS_4              1               56
  CLUS_5              0               63
  CLUS_6              6               86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = PPL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        0      0      0
  PPL WILD-TYPE      9     10      8
D46V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      0      0      0
  PPL WILD-TYPE      7      7      7      6
D46V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        3      1      2
  PPL WILD-TYPE    224    110    173
D46V3, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3           224
  CLUS_2           1           110
  CLUS_3           2           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        3      1      2      0
  PPL WILD-TYPE    206    135    156     13
D46V4, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3           206
  CLUS_2           1           135
  CLUS_3           2           156
  CLUS_4           0            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        1      1      4      0
  PPL WILD-TYPE     90     94    122    117
D46V5, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            90
  CLUS_2           1            94
  CLUS_3           4           122
  CLUS_4           0           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        1      1      4
  PPL WILD-TYPE     82    159    182
D46V6, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            82
  CLUS_2           1           159
  CLUS_3           4           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        1      2      2      1      0
  PPL WILD-TYPE    129    113    104    134     30
D46V7, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           129
  CLUS_2           2           113
  CLUS_3           2           104
  CLUS_4           1           134
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPL MUTATED        1      0      0      1      2      2      0
  PPL WILD-TYPE    134     71     36     67     89     39     74
D46V8, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           134
  CLUS_2           0            71
  CLUS_3           0            36
  CLUS_4           1            67
  CLUS_5           2            89
  CLUS_6           2            39
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      3      0      3
  PPL WILD-TYPE    140    104     83    179
D46V9, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           0           140
  CLUS_2           3           104
  CLUS_3           0            83
  CLUS_4           3           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        2      2      2
  PPL WILD-TYPE    221    184    101
D46V10, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           2           221
  CLUS_2           2           184
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        1      2      2      1
  PPL WILD-TYPE    126    117    104    155
D46V11, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           126
  CLUS_2           2           117
  CLUS_3           2           104
  CLUS_4           1           155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPL MUTATED        1      3      0      0      0      2
  PPL WILD-TYPE     98     74    120     57     63     90
D46V12, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            98
  CLUS_2           3            74
  CLUS_3           0           120
  CLUS_4           0            57
  CLUS_5           0            63
  CLUS_6           2            90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = CIB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      0      0
  CIB1 WILD-TYPE      9     10      8
D47V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      0      0      0
  CIB1 WILD-TYPE      7      7      7      6
D47V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        2      0      2
  CIB1 WILD-TYPE    225    111    173
D47V3, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            2            225
  CLUS_2            0            111
  CLUS_3            2            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        1      1      2      0
  CIB1 WILD-TYPE    208    135    156     13
D47V4, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            1            208
  CLUS_2            1            135
  CLUS_3            2            156
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      2      1      1
  CIB1 WILD-TYPE     91     93    125    116
D47V5, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             91
  CLUS_2            2             93
  CLUS_3            1            125
  CLUS_4            1            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      1      3
  CIB1 WILD-TYPE     83    159    183
D47V6, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             83
  CLUS_2            1            159
  CLUS_3            3            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIB1 MUTATED        0      1      2      1      0
  CIB1 WILD-TYPE    130    114    104    134     30
D47V7, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            130
  CLUS_2            1            114
  CLUS_3            2            104
  CLUS_4            1            134
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIB1 MUTATED        0      0      1      0      1      1      1
  CIB1 WILD-TYPE    135     71     35     68     90     40     73
D47V8, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            135
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             68
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      1      2      1
  CIB1 WILD-TYPE    140    106     81    181
D47V9, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            140
  CLUS_2            1            106
  CLUS_3            2             81
  CLUS_4            1            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      4      0
  CIB1 WILD-TYPE    223    182    103
D47V10, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            223
  CLUS_2            4            182
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      2      1      1
  CIB1 WILD-TYPE    127    117    105    155
D47V11, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2            117
  CLUS_3            1            105
  CLUS_4            1            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIB1 MUTATED        0      2      1      1      0      0
  CIB1 WILD-TYPE     99     75    119     56     63     92
D47V12, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            2             75
  CLUS_3            1            119
  CLUS_4            1             56
  CLUS_5            0             63
  CLUS_6            0             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = ANKRD36 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        0      1      0
  ANKRD36 WILD-TYPE      9      9      8
D48V1, multiclass
[1] "Remove cluster labels:" "ANKRD36 MUTATED"       
clus
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5140        TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5144        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5311 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        0      1      0      0
  ANKRD36 WILD-TYPE      7      6      7      6
D48V2, multiclass
[1] "Remove cluster labels:" "ANKRD36 MUTATED"       
clus
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5140        TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5144        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5311 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        5      2      0
  ANKRD36 WILD-TYPE    222    109    175
D48V3, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               5               222
  CLUS_2               2               109
  CLUS_3               0               175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        6      1      0      0
  ANKRD36 WILD-TYPE    203    135    158     13
D48V4, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               6               203
  CLUS_2               1               135
  CLUS_3               0               158
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        2      2      2      0
  ANKRD36 WILD-TYPE     89     93    124    117
D48V5, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               2                89
  CLUS_2               2                93
  CLUS_3               2               124
  CLUS_4               0               117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        3      1      2
  ANKRD36 WILD-TYPE     80    159    184
D48V6, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3                80
  CLUS_2               1               159
  CLUS_3               2               184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD36 MUTATED        3      2      0      2      0
  ANKRD36 WILD-TYPE    127    113    106    133     30
D48V7, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2               113
  CLUS_3               0               106
  CLUS_4               2               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD36 MUTATED        3      1      0      2      0      1      0
  ANKRD36 WILD-TYPE    132     70     36     66     91     40     74
D48V8, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3               132
  CLUS_2               1                70
  CLUS_3               0                36
  CLUS_4               2                66
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        1      1      2      3
  ANKRD36 WILD-TYPE    139    106     81    179
D48V9, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               1               139
  CLUS_2               1               106
  CLUS_3               2                81
  CLUS_4               3               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        3      3      1
  ANKRD36 WILD-TYPE    220    183    102
D48V10, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3               220
  CLUS_2               3               183
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        2      2      1      2
  ANKRD36 WILD-TYPE    125    117    105    154
D48V11, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               2               117
  CLUS_3               1               105
  CLUS_4               2               154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD36 MUTATED        2      2      1      0      1      1
  ANKRD36 WILD-TYPE     97     75    119     57     62     91
D48V12, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               2                97
  CLUS_2               2                75
  CLUS_3               1               119
  CLUS_4               0                57
  CLUS_5               1                62
  CLUS_6               1                91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = NAP1L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        0      0      0
  NAP1L2 WILD-TYPE      9     10      8
D49V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        0      0      0      0
  NAP1L2 WILD-TYPE      7      7      7      6
D49V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        1      0      3
  NAP1L2 WILD-TYPE    226    111    172
D49V3, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              226
  CLUS_2              0              111
  CLUS_3              3              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        2      0      2      0
  NAP1L2 WILD-TYPE    207    136    156     13
D49V4, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              207
  CLUS_2              0              136
  CLUS_3              2              156
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      0      1      1
  NAP1L2 WILD-TYPE     90     95    125    116
D49V5, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              0               95
  CLUS_3              1              125
  CLUS_4              1              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      1      0
  NAP1L2 WILD-TYPE     81    159    186
D49V6, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               81
  CLUS_2              1              159
  CLUS_3              0              186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        2      0      2      0      0
  NAP1L2 WILD-TYPE    128    115    104    135     30
D49V7, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0              115
  CLUS_3              2              104
  CLUS_4              0              135
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L2 MUTATED        2      0      2      0      0      0      0
  NAP1L2 WILD-TYPE    133     71     34     68     91     41     74
D49V8, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              133
  CLUS_2              0               71
  CLUS_3              2               34
  CLUS_4              0               68
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      1      0      2
  NAP1L2 WILD-TYPE    139    106     83    180
D49V9, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              1              106
  CLUS_3              0               83
  CLUS_4              2              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      2      0
  NAP1L2 WILD-TYPE    221    184    103
D49V10, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              221
  CLUS_2              2              184
  CLUS_3              0              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        2      0      1      1
  NAP1L2 WILD-TYPE    125    119    105    155
D49V11, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              0              119
  CLUS_3              1              105
  CLUS_4              1              155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAP1L2 MUTATED        2      0      1      0      0      1
  NAP1L2 WILD-TYPE     97     77    119     57     63     91
D49V12, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               97
  CLUS_2              0               77
  CLUS_3              1              119
  CLUS_4              0               57
  CLUS_5              0               63
  CLUS_6              1               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = SMOC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        1      0      0
  SMOC1 WILD-TYPE      8     10      8
D50V1, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390      TCGA-CS-5394 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        1      0      0      0
  SMOC1 WILD-TYPE      6      7      7      6
D50V2, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390      TCGA-CS-5394 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        2      1      0
  SMOC1 WILD-TYPE    225    110    175
D50V3, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             225
  CLUS_2             1             110
  CLUS_3             0             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      1      0      0
  SMOC1 WILD-TYPE    207    135    158     13
D50V4, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             207
  CLUS_2             1             135
  CLUS_3             0             158
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        0      0      1      1
  SMOC1 WILD-TYPE     91     95    125    116
D50V5, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              2             427 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DB-A64L      TCGA-DB-A64O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64P      TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64U      TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75K      TCGA-DB-A75L      TCGA-DB-A75M      TCGA-DB-A75O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75P      TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5143      TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-A66F      TCGA-DH-A66G      TCGA-DH-A7US      TCGA-DU-5847 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7014      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-DU-A6S2      TCGA-DU-A6S3 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A6S8      TCGA-DU-A76K      TCGA-DU-A76L      TCGA-DU-A76O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A76R      TCGA-DU-A7T6      TCGA-DU-A7TA      TCGA-DU-A7TB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-DU-A7TI      TCGA-DU-A7TJ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5322      TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN      TCGA-E1-A7YQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YS      TCGA-E1-A7YV      TCGA-E1-A7YW      TCGA-E1-A7YY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7Z2      TCGA-E1-A7Z3      TCGA-E1-A7Z6      TCGA-EZ-7264 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-F6-A8O3      TCGA-F6-A8O4      TCGA-FG-5962      TCGA-FG-5963 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-FG-A60L      TCGA-FG-A6IZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A6J3      TCGA-FG-A70Y      TCGA-FG-A70Z      TCGA-FG-A710 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A713      TCGA-FG-A87N      TCGA-FG-A87Q      TCGA-HT-7467 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7476 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HT-A614 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A615      TCGA-HT-A616      TCGA-HT-A617      TCGA-HT-A618 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A619      TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A74H 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A74J      TCGA-HT-A74L      TCGA-HT-A74O      TCGA-HW-7486 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7493      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-KT-A74X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5ET      TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EX      TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F1      TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A72U      TCGA-P5-A72W      TCGA-P5-A72X      TCGA-P5-A72Z 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A730      TCGA-P5-A731      TCGA-P5-A733      TCGA-P5-A735 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A736      TCGA-P5-A737      TCGA-P5-A77W      TCGA-P5-A77X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A780      TCGA-P5-A781      TCGA-QH-A65S      TCGA-QH-A65V 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CZ      TCGA-QH-A6X4      TCGA-QH-A6X5      TCGA-QH-A6X8 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC      TCGA-QH-A86X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A870      TCGA-R8-A6MK      TCGA-R8-A6ML      TCGA-R8-A6MO 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-R8-A6YH      TCGA-RY-A83X      TCGA-RY-A83Y      TCGA-RY-A83Z 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-RY-A843      TCGA-RY-A845      TCGA-S9-A6TS      TCGA-S9-A6TU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6TV      TCGA-S9-A6TX      TCGA-S9-A6TY      TCGA-S9-A6U0 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6U1      TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U9 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG      TCGA-S9-A6WH 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6WN      TCGA-S9-A6WP      TCGA-S9-A6WQ      TCGA-S9-A7IQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7IS      TCGA-S9-A7IY      TCGA-S9-A7IZ      TCGA-S9-A7J0 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7QX      TCGA-S9-A7QZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7R1      TCGA-S9-A7R4      TCGA-S9-A7R8      TCGA-TM-A7C5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TQ-A7RF      TCGA-TQ-A7RG 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RH      TCGA-TQ-A7RK      TCGA-TQ-A7RN      TCGA-TQ-A7RQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RR      TCGA-TQ-A7RS      TCGA-TQ-A7RV      TCGA-TQ-A7RW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A8XE      TCGA-VM-A8C8      TCGA-VM-A8C9      TCGA-VM-A8CA 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VM-A8CB      TCGA-VM-A8CD      TCGA-VM-A8CE      TCGA-VM-A8CH 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VV-A829      TCGA-VV-A86M      TCGA-VW-A7QS      TCGA-W9-A837 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-WY-A85B      TCGA-WY-A85C      TCGA-WY-A85D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        1      1      0
  SMOC1 WILD-TYPE     82    159    186
D50V6, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              2             427 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DB-A64L      TCGA-DB-A64O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64P      TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64U      TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75K      TCGA-DB-A75L      TCGA-DB-A75M      TCGA-DB-A75O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75P      TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5143      TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-A66F      TCGA-DH-A66G      TCGA-DH-A7US      TCGA-DU-5847 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7014      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-DU-A6S2      TCGA-DU-A6S3 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A6S8      TCGA-DU-A76K      TCGA-DU-A76L      TCGA-DU-A76O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A76R      TCGA-DU-A7T6      TCGA-DU-A7TA      TCGA-DU-A7TB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-DU-A7TI      TCGA-DU-A7TJ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5322      TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN      TCGA-E1-A7YQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YS      TCGA-E1-A7YV      TCGA-E1-A7YW      TCGA-E1-A7YY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7Z2      TCGA-E1-A7Z3      TCGA-E1-A7Z6      TCGA-EZ-7264 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-F6-A8O3      TCGA-F6-A8O4      TCGA-FG-5962      TCGA-FG-5963 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-FG-A60L      TCGA-FG-A6IZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A6J3      TCGA-FG-A70Y      TCGA-FG-A70Z      TCGA-FG-A710 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A713      TCGA-FG-A87N      TCGA-FG-A87Q      TCGA-HT-7467 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7476 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HT-A614 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A615      TCGA-HT-A616      TCGA-HT-A617      TCGA-HT-A618 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A619      TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A74H 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A74J      TCGA-HT-A74L      TCGA-HT-A74O      TCGA-HW-7486 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7493      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-KT-A74X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5ET      TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EX      TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F1      TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A72U      TCGA-P5-A72W      TCGA-P5-A72X      TCGA-P5-A72Z 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A730      TCGA-P5-A731      TCGA-P5-A733      TCGA-P5-A735 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A736      TCGA-P5-A737      TCGA-P5-A77W      TCGA-P5-A77X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A780      TCGA-P5-A781      TCGA-QH-A65S      TCGA-QH-A65V 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CZ      TCGA-QH-A6X4      TCGA-QH-A6X5      TCGA-QH-A6X8 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC      TCGA-QH-A86X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A870      TCGA-R8-A6MK      TCGA-R8-A6ML      TCGA-R8-A6MO 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-R8-A6YH      TCGA-RY-A83X      TCGA-RY-A83Y      TCGA-RY-A83Z 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-RY-A843      TCGA-RY-A845      TCGA-S9-A6TS      TCGA-S9-A6TU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6TV      TCGA-S9-A6TX      TCGA-S9-A6TY      TCGA-S9-A6U0 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6U1      TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U9 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG      TCGA-S9-A6WH 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6WN      TCGA-S9-A6WP      TCGA-S9-A6WQ      TCGA-S9-A7IQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7IS      TCGA-S9-A7IY      TCGA-S9-A7IZ      TCGA-S9-A7J0 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7QX      TCGA-S9-A7QZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7R1      TCGA-S9-A7R4      TCGA-S9-A7R8      TCGA-TM-A7C5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TQ-A7RF      TCGA-TQ-A7RG 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RH      TCGA-TQ-A7RK      TCGA-TQ-A7RN      TCGA-TQ-A7RQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RR      TCGA-TQ-A7RS      TCGA-TQ-A7RV      TCGA-TQ-A7RW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A8XE      TCGA-VM-A8C8      TCGA-VM-A8C9      TCGA-VM-A8CA 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VM-A8CB      TCGA-VM-A8CD      TCGA-VM-A8CE      TCGA-VM-A8CH 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VV-A829      TCGA-VV-A86M      TCGA-VW-A7QS      TCGA-W9-A837 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-WY-A85B      TCGA-WY-A85C      TCGA-WY-A85D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMOC1 MUTATED        0      2      0      1      0
  SMOC1 WILD-TYPE    130    113    106    134     30
D50V7, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2             113
  CLUS_3             0             106
  CLUS_4             1             134
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMOC1 MUTATED        2      0      0      0      0      0      1
  SMOC1 WILD-TYPE    133     71     36     68     91     41     73
D50V8, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              68
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      0      0      1
  SMOC1 WILD-TYPE    138    107     83    181
D50V9, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             138
  CLUS_2             0             107
  CLUS_3             0              83
  CLUS_4             1             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        2      1      0
  SMOC1 WILD-TYPE    221    185    103
D50V10, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             221
  CLUS_2             1             185
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        0      2      0      1
  SMOC1 WILD-TYPE    127    117    106    155
D50V11, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2             117
  CLUS_3             0             106
  CLUS_4             1             155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMOC1 MUTATED        2      0      1      0      0      0
  SMOC1 WILD-TYPE     97     77    119     57     63     92
D50V12, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2              97
  CLUS_2             0              77
  CLUS_3             1             119
  CLUS_4             0              57
  CLUS_5             0              63
  CLUS_6             0              92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = ABCA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        0      0      0
  ABCA7 WILD-TYPE      9     10      8
D51V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        0      0      0      0
  ABCA7 WILD-TYPE      7      7      7      6
D51V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        4      5      1
  ABCA7 WILD-TYPE    223    106    174
D51V3, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             4             223
  CLUS_2             5             106
  CLUS_3             1             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3      4      2      1
  ABCA7 WILD-TYPE    206    132    156     12
D51V4, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             206
  CLUS_2             4             132
  CLUS_3             2             156
  CLUS_4             1              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3      2      2      0
  ABCA7 WILD-TYPE     88     93    124    117
D51V5, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3              88
  CLUS_2             2              93
  CLUS_3             2             124
  CLUS_4             0             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        3      2      2
  ABCA7 WILD-TYPE     80    158    184
D51V6, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3              80
  CLUS_2             2             158
  CLUS_3             2             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA7 MUTATED        2      6      0      2      0
  ABCA7 WILD-TYPE    128    109    106    133     30
D51V7, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             6             109
  CLUS_3             0             106
  CLUS_4             2             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCA7 MUTATED        2      1      0      1      1      3      2
  ABCA7 WILD-TYPE    133     70     36     67     90     38     72
D51V8, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              67
  CLUS_5             1              90
  CLUS_6             3              38
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3      2      1      4
  ABCA7 WILD-TYPE    137    105     82    178
D51V9, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             137
  CLUS_2             2             105
  CLUS_3             1              82
  CLUS_4             4             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        3      2      5
  ABCA7 WILD-TYPE    220    184     98
D51V10, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             220
  CLUS_2             2             184
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        2      3      0      5
  ABCA7 WILD-TYPE    125    116    106    151
D51V11, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3             116
  CLUS_3             0             106
  CLUS_4             5             151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA7 MUTATED        1      2      2      1      2      2
  ABCA7 WILD-TYPE     98     75    118     56     61     90
D51V12, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             2              75
  CLUS_3             2             118
  CLUS_4             1              56
  CLUS_5             2              61
  CLUS_6             2              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = ZNF512B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        0      0      0
  ZNF512B WILD-TYPE      9     10      8
D52V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        0      0      0      0
  ZNF512B WILD-TYPE      7      7      7      6
D52V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        2      2      1
  ZNF512B WILD-TYPE    225    109    174
D52V3, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               2               225
  CLUS_2               2               109
  CLUS_3               1               174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        3      1      1      0
  ZNF512B WILD-TYPE    206    135    157     13
D52V4, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               3               206
  CLUS_2               1               135
  CLUS_3               1               157
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        1      1      1      2
  ZNF512B WILD-TYPE     90     94    125    115
D52V5, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1                90
  CLUS_2               1                94
  CLUS_3               1               125
  CLUS_4               2               115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        2      1      2
  ZNF512B WILD-TYPE     81    159    184
D52V6, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               2                81
  CLUS_2               1               159
  CLUS_3               2               184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF512B MUTATED        1      1      1      2      0
  ZNF512B WILD-TYPE    129    114    105    133     30
D52V7, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1               114
  CLUS_3               1               105
  CLUS_4               2               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF512B MUTATED        1      0      0      1      1      1      1
  ZNF512B WILD-TYPE    134     71     36     67     90     40     73
D52V8, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               134
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               1                67
  CLUS_5               1                90
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        1      1      1      2
  ZNF512B WILD-TYPE    139    106     82    180
D52V9, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               139
  CLUS_2               1               106
  CLUS_3               1                82
  CLUS_4               2               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        2      2      1
  ZNF512B WILD-TYPE    221    184    102
D52V10, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               2               221
  CLUS_2               2               184
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        0      1      1      3
  ZNF512B WILD-TYPE    127    118    105    153
D52V11, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               0               127
  CLUS_2               1               118
  CLUS_3               1               105
  CLUS_4               3               153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF512B MUTATED        1      0      2      0      0      2
  ZNF512B WILD-TYPE     98     77    118     57     63     90
D52V12, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1                98
  CLUS_2               0                77
  CLUS_3               2               118
  CLUS_4               0                57
  CLUS_5               0                63
  CLUS_6               2                90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = PRX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        0      0      0
  PRX WILD-TYPE      9     10      8
D53V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        0      0      0      0
  PRX WILD-TYPE      7      7      7      6
D53V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        4      4      2
  PRX WILD-TYPE    223    107    173
D53V3, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           4           223
  CLUS_2           4           107
  CLUS_3           2           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        2      6      2      0
  PRX WILD-TYPE    207    130    156     13
D53V4, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           2           207
  CLUS_2           6           130
  CLUS_3           2           156
  CLUS_4           0            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        2      2      2      4
  PRX WILD-TYPE     89     93    124    113
D53V5, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           2            89
  CLUS_2           2            93
  CLUS_3           2           124
  CLUS_4           4           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        1      4      5
  PRX WILD-TYPE     82    156    181
D53V6, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1            82
  CLUS_2           4           156
  CLUS_3           5           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRX MUTATED        1      5      0      3      1
  PRX WILD-TYPE    129    110    106    132     29
D53V7, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           129
  CLUS_2           5           110
  CLUS_3           0           106
  CLUS_4           3           132
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRX MUTATED        1      4      0      2      0      2      1
  PRX WILD-TYPE    134     67     36     66     91     39     73
D53V8, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           134
  CLUS_2           4            67
  CLUS_3           0            36
  CLUS_4           2            66
  CLUS_5           0            91
  CLUS_6           2            39
  CLUS_7           1            73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        1      3      1      5
  PRX WILD-TYPE    139    104     82    177
D53V9, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           139
  CLUS_2           3           104
  CLUS_3           1            82
  CLUS_4           5           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        1      2      7
  PRX WILD-TYPE    222    184     96
D53V10, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           222
  CLUS_2           2           184
  CLUS_3           7            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        0      4      1      5
  PRX WILD-TYPE    127    115    105    151
D53V11, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           0           127
  CLUS_2           4           115
  CLUS_3           1           105
  CLUS_4           5           151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRX MUTATED        1      2      3      0      3      1
  PRX WILD-TYPE     98     75    117     57     60     91
D53V12, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1            98
  CLUS_2           2            75
  CLUS_3           3           117
  CLUS_4           0            57
  CLUS_5           3            60
  CLUS_6           1            91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = SMARCB1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      0      0
  SMARCB1 WILD-TYPE      9     10      8
D54V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      0      0      0
  SMARCB1 WILD-TYPE      7      7      7      6
D54V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        2      1      1
  SMARCB1 WILD-TYPE    225    110    174
D54V3, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               225
  CLUS_2               1               110
  CLUS_3               1               174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        2      1      1      0
  SMARCB1 WILD-TYPE    207    135    157     13
D54V4, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               207
  CLUS_2               1               135
  CLUS_3               1               157
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      0      3      0
  SMARCB1 WILD-TYPE     91     95    123    117
D54V5, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                91
  CLUS_2               0                95
  CLUS_3               3               123
  CLUS_4               0               117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      0      3
  SMARCB1 WILD-TYPE     83    160    183
D54V6, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                83
  CLUS_2               0               160
  CLUS_3               3               183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        1      1      0      2      0
  SMARCB1 WILD-TYPE    129    114    106    133     30
D54V7, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1               114
  CLUS_3               0               106
  CLUS_4               2               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCB1 MUTATED        2      0      0      0      0      1      1
  SMARCB1 WILD-TYPE    133     71     36     68     91     40     73
D54V8, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               133
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               0                68
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      1      0      3
  SMARCB1 WILD-TYPE    140    106     83    179
D54V9, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0               140
  CLUS_2               1               106
  CLUS_3               0                83
  CLUS_4               3               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        1      2      1
  SMARCB1 WILD-TYPE    222    184    102
D54V10, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               222
  CLUS_2               2               184
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      0      0      3
  SMARCB1 WILD-TYPE    126    119    106    153
D54V11, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               0               119
  CLUS_3               0               106
  CLUS_4               3               153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCB1 MUTATED        1      0      1      0      0      2
  SMARCB1 WILD-TYPE     98     77    119     57     63     90
D54V12, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                98
  CLUS_2               0                77
  CLUS_3               1               119
  CLUS_4               0                57
  CLUS_5               0                63
  CLUS_6               2                90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = C9ORF79 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF79 MUTATED        1      1      0
  C9ORF79 WILD-TYPE      8      9      8
D55V1, multiclass
[1] "Remove cluster labels:" "C9ORF79 MUTATED"       
clus
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
                2                25 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-DB-5270        TCGA-DB-5273 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311        TCGA-E1-5318 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-E1-5322 
"C9ORF79 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF79 MUTATED        1      0      1      0
  C9ORF79 WILD-TYPE      6      7      6      6
D55V2, multiclass
[1] "Remove cluster labels:" "C9ORF79 MUTATED"       
clus
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
                2                25 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-DB-5270        TCGA-DB-5273 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311        TCGA-E1-5318 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-E1-5322 
"C9ORF79 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF79 MUTATED        3      4      3
  C9ORF79 WILD-TYPE    224    107    172
D55V3, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               3               224
  CLUS_2               4               107
  CLUS_3               3               172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF79 MUTATED        2      4      4      0
  C9ORF79 WILD-TYPE    207    132    154     13
D55V4, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               2               207
  CLUS_2               4               132
  CLUS_3               4               154
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF79 MUTATED        3      2      4      1
  C9ORF79 WILD-TYPE     88     93    122    116
D55V5, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               3                88
  CLUS_2               2                93
  CLUS_3               4               122
  CLUS_4               1               116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF79 MUTATED        4      2      4
  C9ORF79 WILD-TYPE     79    158    182
D55V6, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               4                79
  CLUS_2               2               158
  CLUS_3               4               182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF79 MUTATED        1      3      2      3      1
  C9ORF79 WILD-TYPE    129    112    104    132     29
D55V7, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               3               112
  CLUS_3               2               104
  CLUS_4               3               132
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C9ORF79 MUTATED        2      2      0      0      2      1      3
  C9ORF79 WILD-TYPE    133     69     36     68     89     40     71
D55V8, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               2               133
  CLUS_2               2                69
  CLUS_3               0                36
  CLUS_4               0                68
  CLUS_5               2                89
  CLUS_6               1                40
  CLUS_7               3                71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF79 MUTATED        2      3      2      3
  C9ORF79 WILD-TYPE    138    104     81    179
D55V9, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               2               138
  CLUS_2               3               104
  CLUS_3               2                81
  CLUS_4               3               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF79 MUTATED        4      3      3
  C9ORF79 WILD-TYPE    219    183    100
D55V10, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               4               219
  CLUS_2               3               183
  CLUS_3               3               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF79 MUTATED        1      3      2      4
  C9ORF79 WILD-TYPE    126    116    104    152
D55V11, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3               116
  CLUS_3               2               104
  CLUS_4               4               152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF79 MUTATED        1      1      3      2      2      1
  C9ORF79 WILD-TYPE     98     76    117     55     61     91
D55V12, multiclass
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  CLUS_1               1                98
  CLUS_2               1                76
  CLUS_3               3               117
  CLUS_4               2                55
  CLUS_5               2                61
  CLUS_6               1                91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = KRT3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        0      0      0
  KRT3 WILD-TYPE      9     10      8
D56V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        0      0      0      0
  KRT3 WILD-TYPE      7      7      7      6
D56V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        2      1      1
  KRT3 WILD-TYPE    225    110    174
D56V3, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            225
  CLUS_2            1            110
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      1      1      0
  KRT3 WILD-TYPE    207    135    157     13
D56V4, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            207
  CLUS_2            1            135
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        1      1      1      0
  KRT3 WILD-TYPE     90     94    125    117
D56V5, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            1            125
  CLUS_4            0            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        0      0      3
  KRT3 WILD-TYPE     83    160    183
D56V6, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            0             83
  CLUS_2            0            160
  CLUS_3            3            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT3 MUTATED        2      1      1      0      0
  KRT3 WILD-TYPE    128    114    105    135     30
D56V7, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1            114
  CLUS_3            1            105
  CLUS_4            0            135
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT3 MUTATED        1      1      0      0      1      1      0
  KRT3 WILD-TYPE    134     70     36     68     90     40     74
D56V8, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            1            134
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             68
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      1      1      0
  KRT3 WILD-TYPE    138    106     82    182
D56V9, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            138
  CLUS_2            1            106
  CLUS_3            1             82
  CLUS_4            0            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        2      0      2
  KRT3 WILD-TYPE    221    186    101
D56V10, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            221
  CLUS_2            0            186
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        3      1      0      0
  KRT3 WILD-TYPE    124    118    106    156
D56V11, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1            118
  CLUS_3            0            106
  CLUS_4            0            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT3 MUTATED        2      0      0      0      1      1
  KRT3 WILD-TYPE     97     77    120     57     62     91
D56V12, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2             97
  CLUS_2            0             77
  CLUS_3            0            120
  CLUS_4            0             57
  CLUS_5            1             62
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = ELF4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        0      0      0
  ELF4 WILD-TYPE      9     10      8
D57V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        0      0      0      0
  ELF4 WILD-TYPE      7      7      7      6
D57V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        1      1      2
  ELF4 WILD-TYPE    226    110    173
D57V3, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1            226
  CLUS_2            1            110
  CLUS_3            2            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        1      1      2      0
  ELF4 WILD-TYPE    208    135    156     13
D57V4, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1            208
  CLUS_2            1            135
  CLUS_3            2            156
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        0      1      1      0
  ELF4 WILD-TYPE     91     94    125    117
D57V5, multiclass
[1] "Remove cluster labels:" "ELF4 MUTATED"          
clus
  ELF4 MUTATED ELF4 WILD-TYPE 
             2            427 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W     TCGA-P5-A77X 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S     TCGA-QH-A65V 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML     TCGA-R8-A6MO 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y     TCGA-RY-A83Z 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS     TCGA-S9-A6TU 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6U0 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6     TCGA-S9-A6U9 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ     TCGA-S9-A7J0 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX     TCGA-S9-A7QZ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8     TCGA-TM-A7C5 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF     TCGA-TQ-A7RG 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN     TCGA-TQ-A7RQ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV     TCGA-TQ-A7RW 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9     TCGA-VM-A8CA 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE     TCGA-VM-A8CH 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS     TCGA-W9-A837 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        0      1      1
  ELF4 WILD-TYPE     83    159    185
D57V6, multiclass
[1] "Remove cluster labels:" "ELF4 MUTATED"          
clus
  ELF4 MUTATED ELF4 WILD-TYPE 
             2            427 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W     TCGA-P5-A77X 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S     TCGA-QH-A65V 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML     TCGA-R8-A6MO 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y     TCGA-RY-A83Z 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS     TCGA-S9-A6TU 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6U0 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6     TCGA-S9-A6U9 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ     TCGA-S9-A7J0 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX     TCGA-S9-A7QZ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8     TCGA-TM-A7C5 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF     TCGA-TQ-A7RG 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN     TCGA-TQ-A7RQ 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV     TCGA-TQ-A7RW 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9     TCGA-VM-A8CA 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE     TCGA-VM-A8CH 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS     TCGA-W9-A837 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
    TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"ELF4 WILD-TYPE" "ELF4 WILD-TYPE" "ELF4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF4 MUTATED        1      1      2      0      0
  ELF4 WILD-TYPE    129    114    104    135     30
D57V7, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1            114
  CLUS_3            2            104
  CLUS_4            0            135
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ELF4 MUTATED        0      0      1      1      1      1      0
  ELF4 WILD-TYPE    135     71     35     67     90     40     74
D57V8, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            0            135
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             67
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        1      1      1      1
  ELF4 WILD-TYPE    139    106     82    181
D57V9, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1            139
  CLUS_2            1            106
  CLUS_3            1             82
  CLUS_4            1            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF4 MUTATED        2      1      1
  ELF4 WILD-TYPE    221    185    102
D57V10, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            2            221
  CLUS_2            1            185
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF4 MUTATED        1      0      2      1
  ELF4 WILD-TYPE    126    119    104    155
D57V11, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            0            119
  CLUS_3            2            104
  CLUS_4            1            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELF4 MUTATED        0      0      0      1      0      3
  ELF4 WILD-TYPE     99     77    120     56     63     89
D57V12, multiclass
        clus
vv       ELF4 MUTATED ELF4 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            0             77
  CLUS_3            0            120
  CLUS_4            1             56
  CLUS_5            0             63
  CLUS_6            3             89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = NEU2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        0      0      0
  NEU2 WILD-TYPE      9     10      8
D58V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      0      0      0
  NEU2 WILD-TYPE      7      7      7      6
D58V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        2      3      1
  NEU2 WILD-TYPE    225    108    174
D58V3, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            2            225
  CLUS_2            3            108
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        3      2      1      0
  NEU2 WILD-TYPE    206    134    157     13
D58V4, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            206
  CLUS_2            2            134
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        1      2      2      1
  NEU2 WILD-TYPE     90     93    124    116
D58V5, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            2             93
  CLUS_3            2            124
  CLUS_4            1            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        1      2      3
  NEU2 WILD-TYPE     82    158    183
D58V6, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            1             82
  CLUS_2            2            158
  CLUS_3            3            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEU2 MUTATED        3      1      1      0      1
  NEU2 WILD-TYPE    127    114    105    135     29
D58V7, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1            114
  CLUS_3            1            105
  CLUS_4            0            135
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEU2 MUTATED        3      1      0      0      1      1      0
  NEU2 WILD-TYPE    132     70     36     68     90     40     74
D58V8, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            132
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             68
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      2      2      2
  NEU2 WILD-TYPE    140    105     81    180
D58V9, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            0            140
  CLUS_2            2            105
  CLUS_3            2             81
  CLUS_4            2            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        2      2      2
  NEU2 WILD-TYPE    221    184    101
D58V10, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            2            221
  CLUS_2            2            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        1      0      2      3
  NEU2 WILD-TYPE    126    119    104    153
D58V11, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            0            119
  CLUS_3            2            104
  CLUS_4            3            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEU2 MUTATED        0      0      2      1      0      3
  NEU2 WILD-TYPE     99     77    118     56     63     89
D58V12, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            0             77
  CLUS_3            2            118
  CLUS_4            1             56
  CLUS_5            0             63
  CLUS_6            3             89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = ZNF709 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        0      0      0
  ZNF709 WILD-TYPE      9     10      8
D59V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        0      0      0      0
  ZNF709 WILD-TYPE      7      7      7      6
D59V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      0      2
  ZNF709 WILD-TYPE    226    111    173
D59V3, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              226
  CLUS_2              0              111
  CLUS_3              2              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        0      1      1      1
  ZNF709 WILD-TYPE    209    135    157     12
D59V4, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0              209
  CLUS_2              1              135
  CLUS_3              1              157
  CLUS_4              1               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      0      1      1
  ZNF709 WILD-TYPE     90     95    125    116
D59V5, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              0               95
  CLUS_3              1              125
  CLUS_4              1              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      2      0
  ZNF709 WILD-TYPE     82    158    186
D59V6, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               82
  CLUS_2              2              158
  CLUS_3              0              186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        0      0      0      2      1
  ZNF709 WILD-TYPE    130    115    106    133     29
D59V7, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              0              115
  CLUS_3              0              106
  CLUS_4              2              133
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF709 MUTATED        0      0      0      0      2      0      1
  ZNF709 WILD-TYPE    135     71     36     68     89     41     73
D59V8, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0              135
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              0               68
  CLUS_5              2               89
  CLUS_6              0               41
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      0      0      2
  ZNF709 WILD-TYPE    139    107     83    180
D59V9, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              0              107
  CLUS_3              0               83
  CLUS_4              2              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      2      0
  ZNF709 WILD-TYPE    222    184    103
D59V10, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              222
  CLUS_2              2              184
  CLUS_3              0              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        2      0      0      1
  ZNF709 WILD-TYPE    125    119    106    155
D59V11, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              0              119
  CLUS_3              0              106
  CLUS_4              1              155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF709 MUTATED        0      1      2      0      0      0
  ZNF709 WILD-TYPE     99     76    118     57     63     92
D59V12, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0               99
  CLUS_2              1               76
  CLUS_3              2              118
  CLUS_4              0               57
  CLUS_5              0               63
  CLUS_6              0               92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = R3HDM1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        0      0      1
  R3HDM1 WILD-TYPE      9     10      7
D60V1, multiclass
[1] "Remove cluster labels:" "R3HDM1 MUTATED"        
clus
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DH-5140 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        0      0      0      1
  R3HDM1 WILD-TYPE      7      7      7      5
D60V2, multiclass
[1] "Remove cluster labels:" "R3HDM1 MUTATED"        
clus
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DH-5140 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        3      2      2
  R3HDM1 WILD-TYPE    224    109    173
D60V3, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              3              224
  CLUS_2              2              109
  CLUS_3              2              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        3      2      2      0
  R3HDM1 WILD-TYPE    206    134    156     13
D60V4, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              3              206
  CLUS_2              2              134
  CLUS_3              2              156
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        0      0      3      2
  R3HDM1 WILD-TYPE     91     95    123    115
D60V5, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              0               95
  CLUS_3              3              123
  CLUS_4              2              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        0      2      3
  R3HDM1 WILD-TYPE     83    158    183
D60V6, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0               83
  CLUS_2              2              158
  CLUS_3              3              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM1 MUTATED        1      1      2      3      0
  R3HDM1 WILD-TYPE    129    114    104    132     30
D60V7, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1              114
  CLUS_3              2              104
  CLUS_4              3              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  R3HDM1 MUTATED        1      0      0      2      2      1      1
  R3HDM1 WILD-TYPE    134     71     36     66     89     40     73
D60V8, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              2               66
  CLUS_5              2               89
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        1      1      2      3
  R3HDM1 WILD-TYPE    139    106     81    179
D60V9, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              1              106
  CLUS_3              2               81
  CLUS_4              3              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        3      2      2
  R3HDM1 WILD-TYPE    220    184    101
D60V10, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              3              220
  CLUS_2              2              184
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        0      1      3      3
  R3HDM1 WILD-TYPE    127    118    103    153
D60V11, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              1              118
  CLUS_3              3              103
  CLUS_4              3              153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  R3HDM1 MUTATED        1      2      1      1      1      1
  R3HDM1 WILD-TYPE     98     75    119     56     62     91
D60V12, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              2               75
  CLUS_3              1              119
  CLUS_4              1               56
  CLUS_5              1               62
  CLUS_6              1               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = PLCG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        0      0      1
  PLCG1 WILD-TYPE      9     10      7
D61V1, multiclass
[1] "Remove cluster labels:" "PLCG1 MUTATED"         
clus
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        1      0      0      0
  PLCG1 WILD-TYPE      6      7      7      6
D61V2, multiclass
[1] "Remove cluster labels:" "PLCG1 MUTATED"         
clus
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        0      5      1
  PLCG1 WILD-TYPE    227    106    174
D61V3, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0             227
  CLUS_2             5             106
  CLUS_3             1             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        1      4      1      0
  PLCG1 WILD-TYPE    208    132    157     13
D61V4, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1             208
  CLUS_2             4             132
  CLUS_3             1             157
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        2      2      0      0
  PLCG1 WILD-TYPE     89     93    126    117
D61V5, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             2              93
  CLUS_3             0             126
  CLUS_4             0             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        0      2      2
  PLCG1 WILD-TYPE     83    158    184
D61V6, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0              83
  CLUS_2             2             158
  CLUS_3             2             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLCG1 MUTATED        1      4      0      0      1
  PLCG1 WILD-TYPE    129    111    106    135     29
D61V7, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             4             111
  CLUS_3             0             106
  CLUS_4             0             135
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLCG1 MUTATED        1      3      0      1      1      0      0
  PLCG1 WILD-TYPE    134     68     36     67     90     41     74
D61V8, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             3              68
  CLUS_3             0              36
  CLUS_4             1              67
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        5      0      0      1
  PLCG1 WILD-TYPE    135    107     83    181
D61V9, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             5             135
  CLUS_2             0             107
  CLUS_3             0              83
  CLUS_4             1             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        3      0      3
  PLCG1 WILD-TYPE    220    186    100
D61V10, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             3             220
  CLUS_2             0             186
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        3      3      0      0
  PLCG1 WILD-TYPE    124    116    106    156
D61V11, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3             116
  CLUS_3             0             106
  CLUS_4             0             156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLCG1 MUTATED        0      2      0      0      3      1
  PLCG1 WILD-TYPE     99     75    120     57     60     91
D61V12, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0              99
  CLUS_2             2              75
  CLUS_3             0             120
  CLUS_4             0              57
  CLUS_5             3              60
  CLUS_6             1              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = C14ORF4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        0      0      0
  C14ORF4 WILD-TYPE      9     10      8
D62V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        0      0      0      0
  C14ORF4 WILD-TYPE      7      7      7      6
D62V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        1      1      1
  C14ORF4 WILD-TYPE    226    110    174
D62V3, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               226
  CLUS_2               1               110
  CLUS_3               1               174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        1      2      0      0
  C14ORF4 WILD-TYPE    208    134    158     13
D62V4, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               208
  CLUS_2               2               134
  CLUS_3               0               158
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        0      0      0      1
  C14ORF4 WILD-TYPE     91     95    126    116
D62V5, multiclass
[1] "Remove cluster labels:" "C14ORF4 MUTATED"       
clus
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                1               428 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7014        TCGA-DU-7015        TCGA-DU-7018 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A6S3        TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A76O        TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A7TB        TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TI 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A7TJ        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-E1-A7YH        TCGA-E1-A7YI 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YJ        TCGA-E1-A7YL        TCGA-E1-A7YM        TCGA-E1-A7YN 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YQ        TCGA-E1-A7YS        TCGA-E1-A7YV        TCGA-E1-A7YW 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YY        TCGA-E1-A7Z2        TCGA-E1-A7Z3        TCGA-E1-A7Z6 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-EZ-7264        TCGA-F6-A8O3        TCGA-F6-A8O4        TCGA-FG-5962 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-FG-A60L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A6IZ        TCGA-FG-A6J3        TCGA-FG-A70Y        TCGA-FG-A70Z 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A710        TCGA-FG-A713        TCGA-FG-A87N        TCGA-FG-A87Q 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7471        TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7479        TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7483        TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7603        TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7611        TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7677        TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7690        TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7694        TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7856        TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7873        TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7879        TCGA-HT-7880        TCGA-HT-7882        TCGA-HT-7884 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A614        TCGA-HT-A615        TCGA-HT-A616        TCGA-HT-A617 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A618        TCGA-HT-A619        TCGA-HT-A61A        TCGA-HT-A61B 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A74H        TCGA-HT-A74J        TCGA-HT-A74L        TCGA-HT-A74O 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-7491        TCGA-HW-7493        TCGA-HW-7495        TCGA-HW-8319 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-8320        TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-A5KK        TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-KT-A74X        TCGA-P5-A5ET        TCGA-P5-A5EU        TCGA-P5-A5EV 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY        TCGA-P5-A5EZ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2        TCGA-P5-A5F4 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5F6        TCGA-P5-A72U        TCGA-P5-A72W        TCGA-P5-A72X 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A72Z        TCGA-P5-A730        TCGA-P5-A731        TCGA-P5-A733 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A735        TCGA-P5-A736        TCGA-P5-A737        TCGA-P5-A77W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A77X        TCGA-P5-A780        TCGA-P5-A781        TCGA-QH-A65S 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A65V        TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CU        TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CY        TCGA-QH-A6CZ        TCGA-QH-A6X4        TCGA-QH-A6X5 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A86X        TCGA-QH-A870        TCGA-R8-A6MK        TCGA-R8-A6ML 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-R8-A6MO        TCGA-R8-A6YH        TCGA-RY-A83X        TCGA-RY-A83Y 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-RY-A83Z        TCGA-RY-A843        TCGA-RY-A845        TCGA-S9-A6TS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TX        TCGA-S9-A6TY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U5        TCGA-S9-A6U6 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6U9        TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6WH        TCGA-S9-A6WN        TCGA-S9-A6WP        TCGA-S9-A6WQ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IY        TCGA-S9-A7IZ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7QX 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R4        TCGA-S9-A7R8 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TM-A7C5        TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TQ-A7RF 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RG        TCGA-TQ-A7RH        TCGA-TQ-A7RK        TCGA-TQ-A7RN 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS        TCGA-TQ-A7RV 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RW        TCGA-TQ-A8XE        TCGA-VM-A8C8        TCGA-VM-A8C9 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8CA        TCGA-VM-A8CB        TCGA-VM-A8CD        TCGA-VM-A8CE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8CH        TCGA-VV-A829        TCGA-VV-A86M        TCGA-VW-A7QS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-W9-A837        TCGA-WY-A85B        TCGA-WY-A85C        TCGA-WY-A85D 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        0      1      0
  C14ORF4 WILD-TYPE     83    159    186
D62V6, multiclass
[1] "Remove cluster labels:" "C14ORF4 MUTATED"       
clus
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                1               428 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7014        TCGA-DU-7015        TCGA-DU-7018 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A6S3        TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A76O        TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A7TB        TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TI 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A7TJ        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-E1-A7YH        TCGA-E1-A7YI 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YJ        TCGA-E1-A7YL        TCGA-E1-A7YM        TCGA-E1-A7YN 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YQ        TCGA-E1-A7YS        TCGA-E1-A7YV        TCGA-E1-A7YW 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YY        TCGA-E1-A7Z2        TCGA-E1-A7Z3        TCGA-E1-A7Z6 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-EZ-7264        TCGA-F6-A8O3        TCGA-F6-A8O4        TCGA-FG-5962 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-FG-A60L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A6IZ        TCGA-FG-A6J3        TCGA-FG-A70Y        TCGA-FG-A70Z 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A710        TCGA-FG-A713        TCGA-FG-A87N        TCGA-FG-A87Q 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7471        TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7479        TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7483        TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7603        TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7611        TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7677        TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7690        TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7694        TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7856        TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7873        TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7879        TCGA-HT-7880        TCGA-HT-7882        TCGA-HT-7884 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A614        TCGA-HT-A615        TCGA-HT-A616        TCGA-HT-A617 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A618        TCGA-HT-A619        TCGA-HT-A61A        TCGA-HT-A61B 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A74H        TCGA-HT-A74J        TCGA-HT-A74L        TCGA-HT-A74O 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-7491        TCGA-HW-7493        TCGA-HW-7495        TCGA-HW-8319 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-8320        TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-A5KK        TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-KT-A74X        TCGA-P5-A5ET        TCGA-P5-A5EU        TCGA-P5-A5EV 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY        TCGA-P5-A5EZ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2        TCGA-P5-A5F4 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5F6        TCGA-P5-A72U        TCGA-P5-A72W        TCGA-P5-A72X 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A72Z        TCGA-P5-A730        TCGA-P5-A731        TCGA-P5-A733 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A735        TCGA-P5-A736        TCGA-P5-A737        TCGA-P5-A77W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A77X        TCGA-P5-A780        TCGA-P5-A781        TCGA-QH-A65S 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A65V        TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CU        TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CY        TCGA-QH-A6CZ        TCGA-QH-A6X4        TCGA-QH-A6X5 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A86X        TCGA-QH-A870        TCGA-R8-A6MK        TCGA-R8-A6ML 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-R8-A6MO        TCGA-R8-A6YH        TCGA-RY-A83X        TCGA-RY-A83Y 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-RY-A83Z        TCGA-RY-A843        TCGA-RY-A845        TCGA-S9-A6TS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TX        TCGA-S9-A6TY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U5        TCGA-S9-A6U6 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6U9        TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6WH        TCGA-S9-A6WN        TCGA-S9-A6WP        TCGA-S9-A6WQ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IY        TCGA-S9-A7IZ 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7QX 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R4        TCGA-S9-A7R8 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TM-A7C5        TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TQ-A7RF 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RG        TCGA-TQ-A7RH        TCGA-TQ-A7RK        TCGA-TQ-A7RN 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS        TCGA-TQ-A7RV 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RW        TCGA-TQ-A8XE        TCGA-VM-A8C8        TCGA-VM-A8C9 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8CA        TCGA-VM-A8CB        TCGA-VM-A8CD        TCGA-VM-A8CE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8CH        TCGA-VV-A829        TCGA-VV-A86M        TCGA-VW-A7QS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-W9-A837        TCGA-WY-A85B        TCGA-WY-A85C        TCGA-WY-A85D 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF4 MUTATED        1      1      0      1      0
  C14ORF4 WILD-TYPE    129    114    106    134     30
D62V7, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1               114
  CLUS_3               0               106
  CLUS_4               1               134
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF4 MUTATED        1      1      0      0      0      0      1
  C14ORF4 WILD-TYPE    134     70     36     68     91     41     73
D62V8, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               134
  CLUS_2               1                70
  CLUS_3               0                36
  CLUS_4               0                68
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        1      1      0      1
  C14ORF4 WILD-TYPE    139    106     83    181
D62V9, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               139
  CLUS_2               1               106
  CLUS_3               0                83
  CLUS_4               1               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        1      1      1
  C14ORF4 WILD-TYPE    222    185    102
D62V10, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               222
  CLUS_2               1               185
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        1      1      0      1
  C14ORF4 WILD-TYPE    126    118    106    155
D62V11, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               1               118
  CLUS_3               0               106
  CLUS_4               1               155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF4 MUTATED        1      0      1      0      1      0
  C14ORF4 WILD-TYPE     98     77    119     57     62     92
D62V12, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1                98
  CLUS_2               0                77
  CLUS_3               1               119
  CLUS_4               0                57
  CLUS_5               1                62
  CLUS_6               0                92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = ZBTB20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        0      0      0
  ZBTB20 WILD-TYPE      9     10      8
D63V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        0      0      0      0
  ZBTB20 WILD-TYPE      7      7      7      6
D63V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        3      2     16
  ZBTB20 WILD-TYPE    224    109    159
D63V3, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              224
  CLUS_2              2              109
  CLUS_3             16              159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        2      5     14      0
  ZBTB20 WILD-TYPE    207    131    144     13
D63V4, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              2              207
  CLUS_2              5              131
  CLUS_3             14              144
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        4      2      5      5
  ZBTB20 WILD-TYPE     87     93    121    112
D63V5, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              4               87
  CLUS_2              2               93
  CLUS_3              5              121
  CLUS_4              5              112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        4      8      4
  ZBTB20 WILD-TYPE     79    152    182
D63V6, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              4               79
  CLUS_2              8              152
  CLUS_3              4              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        1      2      5     11      2
  ZBTB20 WILD-TYPE    129    113    101    124     28
D63V7, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2              113
  CLUS_3              5              101
  CLUS_4             11              124
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB20 MUTATED        1      0      4      2      6      2      6
  ZBTB20 WILD-TYPE    134     71     32     66     85     39     68
D63V8, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              134
  CLUS_2              0               71
  CLUS_3              4               32
  CLUS_4              2               66
  CLUS_5              6               85
  CLUS_6              2               39
  CLUS_7              6               68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      2      4     12
  ZBTB20 WILD-TYPE    137    105     79    170
D63V9, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              137
  CLUS_2              2              105
  CLUS_3              4               79
  CLUS_4             12              170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        5     14      2
  ZBTB20 WILD-TYPE    218    172    101
D63V10, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              5              218
  CLUS_2             14              172
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      1      4     13
  ZBTB20 WILD-TYPE    124    118    102    143
D63V11, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              1              118
  CLUS_3              4              102
  CLUS_4             13              143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB20 MUTATED        1      4      9      1      1      5
  ZBTB20 WILD-TYPE     98     73    111     56     62     87
D63V12, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              4               73
  CLUS_3              9              111
  CLUS_4              1               56
  CLUS_5              1               62
  CLUS_6              5               87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = C4BPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        0      0      0
  C4BPA WILD-TYPE      9     10      8
D64V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        0      0      0      0
  C4BPA WILD-TYPE      7      7      7      6
D64V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        2      3      1
  C4BPA WILD-TYPE    225    108    174
D64V3, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             225
  CLUS_2             3             108
  CLUS_3             1             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        2      3      1      0
  C4BPA WILD-TYPE    207    133    157     13
D64V4, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             207
  CLUS_2             3             133
  CLUS_3             1             157
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        0      0      3      1
  C4BPA WILD-TYPE     91     95    123    116
D64V5, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             0              91
  CLUS_2             0              95
  CLUS_3             3             123
  CLUS_4             1             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        0      1      3
  C4BPA WILD-TYPE     83    159    183
D64V6, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             0              83
  CLUS_2             1             159
  CLUS_3             3             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C4BPA MUTATED        2      2      1      1      0
  C4BPA WILD-TYPE    128    113    105    134     30
D64V7, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2             113
  CLUS_3             1             105
  CLUS_4             1             134
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C4BPA MUTATED        1      1      0      1      1      2      0
  C4BPA WILD-TYPE    134     70     36     67     90     39     74
D64V8, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1             134
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              67
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        2      2      1      1
  C4BPA WILD-TYPE    138    105     82    181
D64V9, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             138
  CLUS_2             2             105
  CLUS_3             1              82
  CLUS_4             1             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        3      1      2
  C4BPA WILD-TYPE    220    185    101
D64V10, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             3             220
  CLUS_2             1             185
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        1      1      2      2
  C4BPA WILD-TYPE    126    118    104    154
D64V11, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1             118
  CLUS_3             2             104
  CLUS_4             2             154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C4BPA MUTATED        2      0      1      1      1      1
  C4BPA WILD-TYPE     97     77    119     56     62     91
D64V12, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2              97
  CLUS_2             0              77
  CLUS_3             1             119
  CLUS_4             1              56
  CLUS_5             1              62
  CLUS_6             1              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = ENGASE MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        0      0      0
  ENGASE WILD-TYPE      9     10      8
D65V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        0      0      0      0
  ENGASE WILD-TYPE      7      7      7      6
D65V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        2      2      1
  ENGASE WILD-TYPE    225    109    174
D65V3, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              2              225
  CLUS_2              2              109
  CLUS_3              1              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        2      2      1      0
  ENGASE WILD-TYPE    207    134    157     13
D65V4, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              2              207
  CLUS_2              2              134
  CLUS_3              1              157
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        0      0      1      1
  ENGASE WILD-TYPE     91     95    125    116
D65V5, multiclass
[1] "Remove cluster labels:" "ENGASE MUTATED"        
clus
  ENGASE MUTATED ENGASE WILD-TYPE 
               2              427 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DB-A64L 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A64O       TCGA-DB-A64P       TCGA-DB-A64Q       TCGA-DB-A64R 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A64S       TCGA-DB-A64U       TCGA-DB-A64V       TCGA-DB-A64W 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A64X       TCGA-DB-A75K       TCGA-DB-A75L       TCGA-DB-A75M 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A75O       TCGA-DB-A75P       TCGA-DH-5140       TCGA-DH-5141 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144       TCGA-DH-A66B 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DH-A66D       TCGA-DH-A66F       TCGA-DH-A66G       TCGA-DH-A7US 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7014       TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7290       TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8166       TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TR       TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TW       TCGA-DU-A5TY       TCGA-DU-A6S2       TCGA-DU-A6S3 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A6S8       TCGA-DU-A76K       TCGA-DU-A76L       TCGA-DU-A76O 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A76R       TCGA-DU-A7T6       TCGA-DU-A7TA       TCGA-DU-A7TB 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A7TD       TCGA-DU-A7TG       TCGA-DU-A7TI       TCGA-DU-A7TJ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5307 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7YH       TCGA-E1-A7YI       TCGA-E1-A7YJ       TCGA-E1-A7YL 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7YM       TCGA-E1-A7YN       TCGA-E1-A7YQ       TCGA-E1-A7YS 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7YV       TCGA-E1-A7YW       TCGA-E1-A7YY       TCGA-E1-A7Z2 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7Z3       TCGA-E1-A7Z6       TCGA-EZ-7264       TCGA-F6-A8O3 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-F6-A8O4       TCGA-FG-5962       TCGA-FG-5963       TCGA-FG-5964 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-5965       TCGA-FG-6688       TCGA-FG-6689       TCGA-FG-6690 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-6691       TCGA-FG-7634       TCGA-FG-7636       TCGA-FG-7637 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-7638       TCGA-FG-7641       TCGA-FG-7643       TCGA-FG-8181 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8182       TCGA-FG-8185       TCGA-FG-8186       TCGA-FG-8187 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-8191       TCGA-FG-A4MT 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A4MU       TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A4MY 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A60J       TCGA-FG-A60L       TCGA-FG-A6IZ       TCGA-FG-A6J3 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A70Y       TCGA-FG-A70Z       TCGA-FG-A710       TCGA-FG-A713 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A87N       TCGA-FG-A87Q       TCGA-HT-7467       TCGA-HT-7468 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HT-A614 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A615       TCGA-HT-A616       TCGA-HT-A617       TCGA-HT-A618 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A619       TCGA-HT-A61A       TCGA-HT-A61B       TCGA-HT-A74H 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A74J       TCGA-HT-A74L       TCGA-HT-A74O       TCGA-HW-7486 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7493       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-IK-8125       TCGA-KT-A74X 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5ET       TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5EX       TCGA-P5-A5EY       TCGA-P5-A5EZ       TCGA-P5-A5F0 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5F1       TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A72U       TCGA-P5-A72W       TCGA-P5-A72X       TCGA-P5-A72Z 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A730       TCGA-P5-A731       TCGA-P5-A733       TCGA-P5-A735 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A736       TCGA-P5-A737       TCGA-P5-A77W       TCGA-P5-A77X 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A780       TCGA-P5-A781       TCGA-QH-A65S       TCGA-QH-A65V 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A65X       TCGA-QH-A65Z       TCGA-QH-A6CS       TCGA-QH-A6CU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A6CV       TCGA-QH-A6CW       TCGA-QH-A6CX       TCGA-QH-A6CY 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A6CZ       TCGA-QH-A6X4       TCGA-QH-A6X5       TCGA-QH-A6X8 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A6X9       TCGA-QH-A6XA       TCGA-QH-A6XC       TCGA-QH-A86X 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A870       TCGA-R8-A6MK       TCGA-R8-A6ML       TCGA-R8-A6MO 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-R8-A6YH       TCGA-RY-A83X       TCGA-RY-A83Y       TCGA-RY-A83Z 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-RY-A843       TCGA-RY-A845       TCGA-S9-A6TS       TCGA-S9-A6TU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6TV       TCGA-S9-A6TX       TCGA-S9-A6TY       TCGA-S9-A6U0 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6U1       TCGA-S9-A6U5       TCGA-S9-A6U6       TCGA-S9-A6U9 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG       TCGA-S9-A6WH 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6WN       TCGA-S9-A6WP       TCGA-S9-A6WQ       TCGA-S9-A7IQ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A7IS       TCGA-S9-A7IY       TCGA-S9-A7IZ       TCGA-S9-A7J0 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A7J1       TCGA-S9-A7J2       TCGA-S9-A7QX       TCGA-S9-A7QZ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A7R1       TCGA-S9-A7R4       TCGA-S9-A7R8       TCGA-TM-A7C5 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TQ-A7RF       TCGA-TQ-A7RG 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TQ-A7RH       TCGA-TQ-A7RK       TCGA-TQ-A7RN       TCGA-TQ-A7RQ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TQ-A7RR       TCGA-TQ-A7RS       TCGA-TQ-A7RV       TCGA-TQ-A7RW 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TQ-A8XE       TCGA-VM-A8C8       TCGA-VM-A8C9       TCGA-VM-A8CA 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-VM-A8CB       TCGA-VM-A8CD       TCGA-VM-A8CE       TCGA-VM-A8CH 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-VV-A829       TCGA-VV-A86M       TCGA-VW-A7QS       TCGA-W9-A837 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-WY-A85B       TCGA-WY-A85C       TCGA-WY-A85D 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        0      1      1
  ENGASE WILD-TYPE     83    159    185
D65V6, multiclass
[1] "Remove cluster labels:" "ENGASE MUTATED"        
clus
  ENGASE MUTATED ENGASE WILD-TYPE 
               2              427 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DB-A64L 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A64O       TCGA-DB-A64P       TCGA-DB-A64Q       TCGA-DB-A64R 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A64S       TCGA-DB-A64U       TCGA-DB-A64V       TCGA-DB-A64W 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A64X       TCGA-DB-A75K       TCGA-DB-A75L       TCGA-DB-A75M 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A75O       TCGA-DB-A75P       TCGA-DH-5140       TCGA-DH-5141 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144       TCGA-DH-A66B 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DH-A66D       TCGA-DH-A66F       TCGA-DH-A66G       TCGA-DH-A7US 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7014       TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7290       TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8166       TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TR       TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TW       TCGA-DU-A5TY       TCGA-DU-A6S2       TCGA-DU-A6S3 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A6S8       TCGA-DU-A76K       TCGA-DU-A76L       TCGA-DU-A76O 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A76R       TCGA-DU-A7T6       TCGA-DU-A7TA       TCGA-DU-A7TB 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A7TD       TCGA-DU-A7TG       TCGA-DU-A7TI       TCGA-DU-A7TJ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5307 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7YH       TCGA-E1-A7YI       TCGA-E1-A7YJ       TCGA-E1-A7YL 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7YM       TCGA-E1-A7YN       TCGA-E1-A7YQ       TCGA-E1-A7YS 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7YV       TCGA-E1-A7YW       TCGA-E1-A7YY       TCGA-E1-A7Z2 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-A7Z3       TCGA-E1-A7Z6       TCGA-EZ-7264       TCGA-F6-A8O3 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-F6-A8O4       TCGA-FG-5962       TCGA-FG-5963       TCGA-FG-5964 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-5965       TCGA-FG-6688       TCGA-FG-6689       TCGA-FG-6690 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-6691       TCGA-FG-7634       TCGA-FG-7636       TCGA-FG-7637 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-7638       TCGA-FG-7641       TCGA-FG-7643       TCGA-FG-8181 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8182       TCGA-FG-8185       TCGA-FG-8186       TCGA-FG-8187 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-8191       TCGA-FG-A4MT 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A4MU       TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A4MY 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A60J       TCGA-FG-A60L       TCGA-FG-A6IZ       TCGA-FG-A6J3 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A70Y       TCGA-FG-A70Z       TCGA-FG-A710       TCGA-FG-A713 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A87N       TCGA-FG-A87Q       TCGA-HT-7467       TCGA-HT-7468 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HT-A614 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A615       TCGA-HT-A616       TCGA-HT-A617       TCGA-HT-A618 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A619       TCGA-HT-A61A       TCGA-HT-A61B       TCGA-HT-A74H 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A74J       TCGA-HT-A74L       TCGA-HT-A74O       TCGA-HW-7486 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7493       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-IK-8125       TCGA-KT-A74X 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5ET       TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5EX       TCGA-P5-A5EY       TCGA-P5-A5EZ       TCGA-P5-A5F0 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5F1       TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A72U       TCGA-P5-A72W       TCGA-P5-A72X       TCGA-P5-A72Z 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A730       TCGA-P5-A731       TCGA-P5-A733       TCGA-P5-A735 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A736       TCGA-P5-A737       TCGA-P5-A77W       TCGA-P5-A77X 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A780       TCGA-P5-A781       TCGA-QH-A65S       TCGA-QH-A65V 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A65X       TCGA-QH-A65Z       TCGA-QH-A6CS       TCGA-QH-A6CU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A6CV       TCGA-QH-A6CW       TCGA-QH-A6CX       TCGA-QH-A6CY 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A6CZ       TCGA-QH-A6X4       TCGA-QH-A6X5       TCGA-QH-A6X8 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A6X9       TCGA-QH-A6XA       TCGA-QH-A6XC       TCGA-QH-A86X 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-QH-A870       TCGA-R8-A6MK       TCGA-R8-A6ML       TCGA-R8-A6MO 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-R8-A6YH       TCGA-RY-A83X       TCGA-RY-A83Y       TCGA-RY-A83Z 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-RY-A843       TCGA-RY-A845       TCGA-S9-A6TS       TCGA-S9-A6TU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6TV       TCGA-S9-A6TX       TCGA-S9-A6TY       TCGA-S9-A6U0 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6U1       TCGA-S9-A6U5       TCGA-S9-A6U6       TCGA-S9-A6U9 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG       TCGA-S9-A6WH 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A6WN       TCGA-S9-A6WP       TCGA-S9-A6WQ       TCGA-S9-A7IQ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A7IS       TCGA-S9-A7IY       TCGA-S9-A7IZ       TCGA-S9-A7J0 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A7J1       TCGA-S9-A7J2       TCGA-S9-A7QX       TCGA-S9-A7QZ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-S9-A7R1       TCGA-S9-A7R4       TCGA-S9-A7R8       TCGA-TM-A7C5 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TQ-A7RF       TCGA-TQ-A7RG 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TQ-A7RH       TCGA-TQ-A7RK       TCGA-TQ-A7RN       TCGA-TQ-A7RQ 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TQ-A7RR       TCGA-TQ-A7RS       TCGA-TQ-A7RV       TCGA-TQ-A7RW 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-TQ-A8XE       TCGA-VM-A8C8       TCGA-VM-A8C9       TCGA-VM-A8CA 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-VM-A8CB       TCGA-VM-A8CD       TCGA-VM-A8CE       TCGA-VM-A8CH 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-VV-A829       TCGA-VV-A86M       TCGA-VW-A7QS       TCGA-W9-A837 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-WY-A85B       TCGA-WY-A85C       TCGA-WY-A85D 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENGASE MUTATED        0      2      1      1      1
  ENGASE WILD-TYPE    130    113    105    134     29
D65V7, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              0              130
  CLUS_2              2              113
  CLUS_3              1              105
  CLUS_4              1              134
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENGASE MUTATED        1      0      0      1      1      2      0
  ENGASE WILD-TYPE    134     71     36     67     90     39     74
D65V8, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              1              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               67
  CLUS_5              1               90
  CLUS_6              2               39
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        2      2      0      1
  ENGASE WILD-TYPE    138    105     83    181
D65V9, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              2              138
  CLUS_2              2              105
  CLUS_3              0               83
  CLUS_4              1              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        2      1      2
  ENGASE WILD-TYPE    221    185    101
D65V10, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              2              221
  CLUS_2              1              185
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        1      2      1      1
  ENGASE WILD-TYPE    126    117    105    155
D65V11, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2              117
  CLUS_3              1              105
  CLUS_4              1              155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENGASE MUTATED        1      1      1      1      0      1
  ENGASE WILD-TYPE     98     76    119     56     63     91
D65V12, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              1               98
  CLUS_2              1               76
  CLUS_3              1              119
  CLUS_4              1               56
  CLUS_5              0               63
  CLUS_6              1               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DLC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        0      0      0
  DLC1 WILD-TYPE      9     10      8
D66V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        0      0      0      0
  DLC1 WILD-TYPE      7      7      7      6
D66V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      4      1
  DLC1 WILD-TYPE    226    107    174
D66V3, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            226
  CLUS_2            4            107
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        2      3      1      0
  DLC1 WILD-TYPE    207    133    157     13
D66V4, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            207
  CLUS_2            3            133
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      1      2      0
  DLC1 WILD-TYPE     90     94    124    117
D66V5, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            2            124
  CLUS_4            0            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        0      2      2
  DLC1 WILD-TYPE     83    158    184
D66V6, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            0             83
  CLUS_2            2            158
  CLUS_3            2            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLC1 MUTATED        2      3      0      1      0
  DLC1 WILD-TYPE    128    112    106    134     30
D66V7, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3            112
  CLUS_3            0            106
  CLUS_4            1            134
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLC1 MUTATED        2      2      0      0      0      1      1
  DLC1 WILD-TYPE    133     69     36     68     91     40     73
D66V8, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            133
  CLUS_2            2             69
  CLUS_3            0             36
  CLUS_4            0             68
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      2      1      2
  DLC1 WILD-TYPE    139    105     82    180
D66V9, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            139
  CLUS_2            2            105
  CLUS_3            1             82
  CLUS_4            2            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      2      3
  DLC1 WILD-TYPE    222    184    100
D66V10, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            222
  CLUS_2            2            184
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        2      1      0      3
  DLC1 WILD-TYPE    125    118    106    153
D66V11, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            1            118
  CLUS_3            0            106
  CLUS_4            3            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLC1 MUTATED        0      0      0      0      2      4
  DLC1 WILD-TYPE     99     77    120     57     61     88
D66V12, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            0             77
  CLUS_3            0            120
  CLUS_4            0             57
  CLUS_5            2             61
  CLUS_6            4             88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = G6PC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        0      0      0
  G6PC WILD-TYPE      9     10      8
D67V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        0      0      0      0
  G6PC WILD-TYPE      7      7      7      6
D67V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      3      2
  G6PC WILD-TYPE    226    108    173
D67V3, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            226
  CLUS_2            3            108
  CLUS_3            2            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        1      3      2      0
  G6PC WILD-TYPE    208    133    156     13
D67V4, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            208
  CLUS_2            3            133
  CLUS_3            2            156
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        2      1      2      1
  G6PC WILD-TYPE     89     94    124    116
D67V5, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            2             89
  CLUS_2            1             94
  CLUS_3            2            124
  CLUS_4            1            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      2      3
  G6PC WILD-TYPE     82    158    183
D67V6, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1             82
  CLUS_2            2            158
  CLUS_3            3            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  G6PC MUTATED        1      1      2      1      1
  G6PC WILD-TYPE    129    114    104    134     29
D67V7, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1            114
  CLUS_3            2            104
  CLUS_4            1            134
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  G6PC MUTATED        0      1      1      1      1      2      0
  G6PC WILD-TYPE    135     70     35     67     90     39     74
D67V8, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0            135
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             67
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        0      2      1      3
  G6PC WILD-TYPE    140    105     82    179
D67V9, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0            140
  CLUS_2            2            105
  CLUS_3            1             82
  CLUS_4            3            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      2      3
  G6PC WILD-TYPE    222    184    100
D67V10, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            222
  CLUS_2            2            184
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        1      0      1      4
  G6PC WILD-TYPE    126    119    105    152
D67V11, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            126
  CLUS_2            0            119
  CLUS_3            1            105
  CLUS_4            4            152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  G6PC MUTATED        1      0      3      1      0      1
  G6PC WILD-TYPE     98     77    117     56     63     91
D67V12, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1             98
  CLUS_2            0             77
  CLUS_3            3            117
  CLUS_4            1             56
  CLUS_5            0             63
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = SLC12A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        0      1      0
  SLC12A7 WILD-TYPE      9      9      8
D68V1, multiclass
[1] "Remove cluster labels:" "SLC12A7 MUTATED"       
clus
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5394 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        0      0      1      0
  SLC12A7 WILD-TYPE      7      7      6      6
D68V2, multiclass
[1] "Remove cluster labels:" "SLC12A7 MUTATED"       
clus
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5394 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        1      4      2
  SLC12A7 WILD-TYPE    226    107    173
D68V3, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1               226
  CLUS_2               4               107
  CLUS_3               2               173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        2      3      2      0
  SLC12A7 WILD-TYPE    207    133    156     13
D68V4, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               207
  CLUS_2               3               133
  CLUS_3               2               156
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        0      1      4      2
  SLC12A7 WILD-TYPE     91     94    122    115
D68V5, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               0                91
  CLUS_2               1                94
  CLUS_3               4               122
  CLUS_4               2               115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        0      2      5
  SLC12A7 WILD-TYPE     83    158    181
D68V6, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               0                83
  CLUS_2               2               158
  CLUS_3               5               181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        2      2      2      1      0
  SLC12A7 WILD-TYPE    128    113    104    134     30
D68V7, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2               113
  CLUS_3               2               104
  CLUS_4               1               134
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC12A7 MUTATED        2      1      1      0      1      1      1
  SLC12A7 WILD-TYPE    133     70     35     68     90     40     73
D68V8, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               133
  CLUS_2               1                70
  CLUS_3               1                35
  CLUS_4               0                68
  CLUS_5               1                90
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        3      1      2      1
  SLC12A7 WILD-TYPE    137    106     81    181
D68V9, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               137
  CLUS_2               1               106
  CLUS_3               2                81
  CLUS_4               1               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        3      2      2
  SLC12A7 WILD-TYPE    220    184    101
D68V10, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               220
  CLUS_2               2               184
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        1      1      3      2
  SLC12A7 WILD-TYPE    126    118    103    154
D68V11, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               1               118
  CLUS_3               3               103
  CLUS_4               2               154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC12A7 MUTATED        1      1      1      1      1      2
  SLC12A7 WILD-TYPE     98     76    119     56     62     90
D68V12, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1                98
  CLUS_2               1                76
  CLUS_3               1               119
  CLUS_4               1                56
  CLUS_5               1                62
  CLUS_6               2                90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = RET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        0      0      0
  RET WILD-TYPE      9     10      8
D69V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        0      0      0      0
  RET WILD-TYPE      7      7      7      6
D69V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        2      2      3
  RET WILD-TYPE    225    109    172
D69V3, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           225
  CLUS_2           2           109
  CLUS_3           3           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        2      3      2      0
  RET WILD-TYPE    207    133    156     13
D69V4, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           207
  CLUS_2           3           133
  CLUS_3           2           156
  CLUS_4           0            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        0      2      1      1
  RET WILD-TYPE     91     93    125    116
D69V5, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           0            91
  CLUS_2           2            93
  CLUS_3           1           125
  CLUS_4           1           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        0      2      2
  RET WILD-TYPE     83    158    184
D69V6, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           0            83
  CLUS_2           2           158
  CLUS_3           2           184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RET MUTATED        1      3      0      3      0
  RET WILD-TYPE    129    112    106    132     30
D69V7, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           129
  CLUS_2           3           112
  CLUS_3           0           106
  CLUS_4           3           132
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RET MUTATED        1      2      1      1      0      1      1
  RET WILD-TYPE    134     69     35     67     91     40     73
D69V8, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           134
  CLUS_2           2            69
  CLUS_3           1            35
  CLUS_4           1            67
  CLUS_5           0            91
  CLUS_6           1            40
  CLUS_7           1            73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        2      1      0      4
  RET WILD-TYPE    138    106     83    178
D69V9, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           138
  CLUS_2           1           106
  CLUS_3           0            83
  CLUS_4           4           178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        1      3      3
  RET WILD-TYPE    222    183    100
D69V10, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           222
  CLUS_2           3           183
  CLUS_3           3           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        2      1      0      4
  RET WILD-TYPE    125    118    106    152
D69V11, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           125
  CLUS_2           1           118
  CLUS_3           0           106
  CLUS_4           4           152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RET MUTATED        1      0      2      0      2      2
  RET WILD-TYPE     98     77    118     57     61     90
D69V12, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1            98
  CLUS_2           0            77
  CLUS_3           2           118
  CLUS_4           0            57
  CLUS_5           2            61
  CLUS_6           2            90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        0      1      0
  SETD2 WILD-TYPE      9      9      8
D70V1, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        0      1      0      0
  SETD2 WILD-TYPE      7      6      7      6
D70V2, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        4      5      1
  SETD2 WILD-TYPE    223    106    174
D70V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             4             223
  CLUS_2             5             106
  CLUS_3             1             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        1      6      2      1
  SETD2 WILD-TYPE    208    130    156     12
D70V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1             208
  CLUS_2             6             130
  CLUS_3             2             156
  CLUS_4             1              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        2      2      2      2
  SETD2 WILD-TYPE     89     93    124    115
D70V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             2              93
  CLUS_3             2             124
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        2      3      3
  SETD2 WILD-TYPE     81    157    183
D70V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              81
  CLUS_2             3             157
  CLUS_3             3             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        0      6      1      0      3
  SETD2 WILD-TYPE    130    109    105    135     27
D70V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             6             109
  CLUS_3             1             105
  CLUS_4             0             135
  CLUS_5             3              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD2 MUTATED        1      2      0      1      1      4      1
  SETD2 WILD-TYPE    134     69     36     67     90     37     73
D70V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             1              67
  CLUS_5             1              90
  CLUS_6             4              37
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        1      4      2      3
  SETD2 WILD-TYPE    139    103     81    179
D70V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1             139
  CLUS_2             4             103
  CLUS_3             2              81
  CLUS_4             3             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        3      2      5
  SETD2 WILD-TYPE    220    184     98
D70V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             220
  CLUS_2             2             184
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        2      4      0      4
  SETD2 WILD-TYPE    125    115    106    152
D70V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4             115
  CLUS_3             0             106
  CLUS_4             4             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETD2 MUTATED        1      3      3      1      1      1
  SETD2 WILD-TYPE     98     74    117     56     62     91
D70V12, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             3              74
  CLUS_3             3             117
  CLUS_4             1              56
  CLUS_5             1              62
  CLUS_6             1              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = ZC3H11A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        0      0      0
  ZC3H11A WILD-TYPE      9     10      8
D71V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        0      0      0      0
  ZC3H11A WILD-TYPE      7      7      7      6
D71V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      4      0
  ZC3H11A WILD-TYPE    225    107    175
D71V3, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               225
  CLUS_2               4               107
  CLUS_3               0               175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        1      5      0      0
  ZC3H11A WILD-TYPE    208    131    158     13
D71V4, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               1               208
  CLUS_2               5               131
  CLUS_3               0               158
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        2      1      2      0
  ZC3H11A WILD-TYPE     89     94    124    117
D71V5, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                89
  CLUS_2               1                94
  CLUS_3               2               124
  CLUS_4               0               117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        0      0      5
  ZC3H11A WILD-TYPE     83    160    181
D71V6, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0                83
  CLUS_2               0               160
  CLUS_3               5               181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        1      5      0      0      0
  ZC3H11A WILD-TYPE    129    110    106    135     30
D71V7, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               1               129
  CLUS_2               5               110
  CLUS_3               0               106
  CLUS_4               0               135
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H11A MUTATED        1      4      0      0      0      1      0
  ZC3H11A WILD-TYPE    134     67     36     68     91     40     74
D71V8, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               1               134
  CLUS_2               4                67
  CLUS_3               0                36
  CLUS_4               0                68
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        2      3      0      1
  ZC3H11A WILD-TYPE    138    104     83    181
D71V9, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               138
  CLUS_2               3               104
  CLUS_3               0                83
  CLUS_4               1               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      4
  ZC3H11A WILD-TYPE    221    186     99
D71V10, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               221
  CLUS_2               0               186
  CLUS_3               4                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        1      4      0      1
  ZC3H11A WILD-TYPE    126    115    106    155
D71V11, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               1               126
  CLUS_2               4               115
  CLUS_3               0               106
  CLUS_4               1               155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H11A MUTATED        2      0      0      0      3      1
  ZC3H11A WILD-TYPE     97     77    120     57     60     91
D71V12, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                97
  CLUS_2               0                77
  CLUS_3               0               120
  CLUS_4               0                57
  CLUS_5               3                60
  CLUS_6               1                91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = USP6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        0      0      1
  USP6 WILD-TYPE      9     10      7
D72V1, multiclass
[1] "Remove cluster labels:" "USP6 MUTATED"          
clus
  USP6 MUTATED USP6 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        0      0      0      1
  USP6 WILD-TYPE      7      7      7      5
D72V2, multiclass
[1] "Remove cluster labels:" "USP6 MUTATED"          
clus
  USP6 MUTATED USP6 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        4      2      1
  USP6 WILD-TYPE    223    109    174
D72V3, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            4            223
  CLUS_2            2            109
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        3      3      1      0
  USP6 WILD-TYPE    206    133    157     13
D72V4, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            3            206
  CLUS_2            3            133
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        1      2      2      1
  USP6 WILD-TYPE     90     93    124    116
D72V5, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            2             93
  CLUS_3            2            124
  CLUS_4            1            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        1      2      3
  USP6 WILD-TYPE     82    158    183
D72V6, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            1             82
  CLUS_2            2            158
  CLUS_3            3            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP6 MUTATED        3      3      0      1      0
  USP6 WILD-TYPE    127    112    106    134     30
D72V7, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3            112
  CLUS_3            0            106
  CLUS_4            1            134
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP6 MUTATED        2      1      1      1      0      2      0
  USP6 WILD-TYPE    133     70     35     67     91     39     74
D72V8, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            2            133
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             67
  CLUS_5            0             91
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        3      2      1      1
  USP6 WILD-TYPE    137    105     82    181
D72V9, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            3            137
  CLUS_2            2            105
  CLUS_3            1             82
  CLUS_4            1            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        3      1      3
  USP6 WILD-TYPE    220    185    100
D72V10, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            3            220
  CLUS_2            1            185
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        3      1      1      2
  USP6 WILD-TYPE    124    118    105    154
D72V11, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1            118
  CLUS_3            1            105
  CLUS_4            2            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP6 MUTATED        2      2      0      0      1      2
  USP6 WILD-TYPE     97     75    120     57     62     90
D72V12, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            2             97
  CLUS_2            2             75
  CLUS_3            0            120
  CLUS_4            0             57
  CLUS_5            1             62
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = RBBP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      0      0
  RBBP6 WILD-TYPE      9     10      8
D73V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      0      0      0
  RBBP6 WILD-TYPE      7      7      7      6
D73V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      2      4
  RBBP6 WILD-TYPE    227    109    171
D73V3, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             227
  CLUS_2             2             109
  CLUS_3             4             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      1      4      1
  RBBP6 WILD-TYPE    209    135    154     12
D73V4, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             209
  CLUS_2             1             135
  CLUS_3             4             154
  CLUS_4             1              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        1      1      2      2
  RBBP6 WILD-TYPE     90     94    124    115
D73V5, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             1              94
  CLUS_3             2             124
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      5      1
  RBBP6 WILD-TYPE     83    155    185
D73V6, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0              83
  CLUS_2             5             155
  CLUS_3             1             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBBP6 MUTATED        0      2      4      0      0
  RBBP6 WILD-TYPE    130    113    102    135     30
D73V7, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2             113
  CLUS_3             4             102
  CLUS_4             0             135
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBBP6 MUTATED        0      0      0      0      4      2      0
  RBBP6 WILD-TYPE    135     71     36     68     87     39     74
D73V8, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             135
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              68
  CLUS_5             4              87
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      1      2      3
  RBBP6 WILD-TYPE    140    106     81    179
D73V9, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             140
  CLUS_2             1             106
  CLUS_3             2              81
  CLUS_4             3             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        3      0      3
  RBBP6 WILD-TYPE    220    186    100
D73V10, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             3             220
  CLUS_2             0             186
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      0      4      2
  RBBP6 WILD-TYPE    127    119    102    154
D73V11, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             0             119
  CLUS_3             4             102
  CLUS_4             2             154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBBP6 MUTATED        0      1      0      1      0      4
  RBBP6 WILD-TYPE     99     76    120     56     63     88
D73V12, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0              99
  CLUS_2             1              76
  CLUS_3             0             120
  CLUS_4             1              56
  CLUS_5             0              63
  CLUS_6             4              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = SLFN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        0      0      0
  SLFN11 WILD-TYPE      9     10      8
D74V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        0      0      0      0
  SLFN11 WILD-TYPE      7      7      7      6
D74V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        4      2      0
  SLFN11 WILD-TYPE    223    109    175
D74V3, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              4              223
  CLUS_2              2              109
  CLUS_3              0              175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        4      1      1      0
  SLFN11 WILD-TYPE    205    135    157     13
D74V4, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              4              205
  CLUS_2              1              135
  CLUS_3              1              157
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        1      1      2      2
  SLFN11 WILD-TYPE     90     94    124    115
D74V5, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              1               94
  CLUS_3              2              124
  CLUS_4              2              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        0      4      2
  SLFN11 WILD-TYPE     83    156    184
D74V6, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              0               83
  CLUS_2              4              156
  CLUS_3              2              184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN11 MUTATED        1      2      1      1      1
  SLFN11 WILD-TYPE    129    113    105    134     29
D74V7, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2              113
  CLUS_3              1              105
  CLUS_4              1              134
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLFN11 MUTATED        2      0      0      1      1      2      0
  SLFN11 WILD-TYPE    133     71     36     67     90     39     74
D74V8, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              2              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               67
  CLUS_5              1               90
  CLUS_6              2               39
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        1      3      0      2
  SLFN11 WILD-TYPE    139    104     83    180
D74V9, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              3              104
  CLUS_3              0               83
  CLUS_4              2              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        4      0      2
  SLFN11 WILD-TYPE    219    186    101
D74V10, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              4              219
  CLUS_2              0              186
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        3      1      0      2
  SLFN11 WILD-TYPE    124    118    106    154
D74V11, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              1              118
  CLUS_3              0              106
  CLUS_4              2              154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLFN11 MUTATED        1      1      0      1      0      3
  SLFN11 WILD-TYPE     98     76    120     56     63     89
D74V12, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              1               76
  CLUS_3              0              120
  CLUS_4              1               56
  CLUS_5              0               63
  CLUS_6              3               89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = ASXL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      0      0
  ASXL2 WILD-TYPE      9     10      8
D75V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      0      0      0
  ASXL2 WILD-TYPE      7      7      7      6
D75V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      1      2
  ASXL2 WILD-TYPE    227    110    173
D75V3, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             227
  CLUS_2             1             110
  CLUS_3             2             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      2      0
  ASXL2 WILD-TYPE    209    135    156     13
D75V4, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             209
  CLUS_2             1             135
  CLUS_3             2             156
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      0      2      1
  ASXL2 WILD-TYPE     91     95    124    116
D75V5, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             0              95
  CLUS_3             2             124
  CLUS_4             1             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      2      1
  ASXL2 WILD-TYPE     83    158    185
D75V6, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              83
  CLUS_2             2             158
  CLUS_3             1             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL2 MUTATED        0      1      1      1      0
  ASXL2 WILD-TYPE    130    114    105    134     30
D75V7, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             1             114
  CLUS_3             1             105
  CLUS_4             1             134
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASXL2 MUTATED        0      0      0      0      1      1      1
  ASXL2 WILD-TYPE    135     71     36     68     90     40     73
D75V8, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             135
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              68
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      1      1
  ASXL2 WILD-TYPE    140    106     82    181
D75V9, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             140
  CLUS_2             1             106
  CLUS_3             1              82
  CLUS_4             1             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        1      1      1
  ASXL2 WILD-TYPE    222    185    102
D75V10, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             1             222
  CLUS_2             1             185
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      0      1      2
  ASXL2 WILD-TYPE    127    119    105    154
D75V11, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             0             119
  CLUS_3             1             105
  CLUS_4             2             154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASXL2 MUTATED        0      0      0      1      0      2
  ASXL2 WILD-TYPE     99     77    120     56     63     90
D75V12, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              99
  CLUS_2             0              77
  CLUS_3             0             120
  CLUS_4             1              56
  CLUS_5             0              63
  CLUS_6             2              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = KRT15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        0      0      0
  KRT15 WILD-TYPE      9     10      8
D76V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        0      0      0      0
  KRT15 WILD-TYPE      7      7      7      6
D76V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        1      3      2
  KRT15 WILD-TYPE    226    108    173
D76V3, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1             226
  CLUS_2             3             108
  CLUS_3             2             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        2      1      2      1
  KRT15 WILD-TYPE    207    135    156     12
D76V4, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             2             207
  CLUS_2             1             135
  CLUS_3             2             156
  CLUS_4             1              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        0      1      1      1
  KRT15 WILD-TYPE     91     94    125    116
D76V5, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             1              94
  CLUS_3             1             125
  CLUS_4             1             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        1      1      1
  KRT15 WILD-TYPE     82    159    185
D76V6, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1              82
  CLUS_2             1             159
  CLUS_3             1             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT15 MUTATED        0      2      1      3      0
  KRT15 WILD-TYPE    130    113    105    132     30
D76V7, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2             113
  CLUS_3             1             105
  CLUS_4             3             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT15 MUTATED        0      1      0      1      2      1      1
  KRT15 WILD-TYPE    135     70     36     67     89     40     73
D76V8, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0             135
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              67
  CLUS_5             2              89
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        3      0      1      2
  KRT15 WILD-TYPE    137    107     82    180
D76V9, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             3             137
  CLUS_2             0             107
  CLUS_3             1              82
  CLUS_4             2             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        2      3      1
  KRT15 WILD-TYPE    221    183    102
D76V10, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             2             221
  CLUS_2             3             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        1      2      1      2
  KRT15 WILD-TYPE    126    117    105    154
D76V11, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2             117
  CLUS_3             1             105
  CLUS_4             2             154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT15 MUTATED        1      1      2      1      1      0
  KRT15 WILD-TYPE     98     76    118     56     62     92
D76V12, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             1              76
  CLUS_3             2             118
  CLUS_4             1              56
  CLUS_5             1              62
  CLUS_6             0              92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = FMR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        0      0      0
  FMR1 WILD-TYPE      9     10      8
D77V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        0      0      0      0
  FMR1 WILD-TYPE      7      7      7      6
D77V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        3      1      1
  FMR1 WILD-TYPE    224    110    174
D77V3, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            3            224
  CLUS_2            1            110
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        2      3      0      0
  FMR1 WILD-TYPE    207    133    158     13
D77V4, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            2            207
  CLUS_2            3            133
  CLUS_3            0            158
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        2      2      1      0
  FMR1 WILD-TYPE     89     93    125    117
D77V5, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            2             89
  CLUS_2            2             93
  CLUS_3            1            125
  CLUS_4            0            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        2      2      1
  FMR1 WILD-TYPE     81    158    185
D77V6, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            2             81
  CLUS_2            2            158
  CLUS_3            1            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FMR1 MUTATED        2      3      0      0      0
  FMR1 WILD-TYPE    128    112    106    135     30
D77V7, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3            112
  CLUS_3            0            106
  CLUS_4            0            135
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FMR1 MUTATED        3      1      0      0      0      1      0
  FMR1 WILD-TYPE    132     70     36     68     91     40     74
D77V8, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            3            132
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             68
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        1      3      0      1
  FMR1 WILD-TYPE    139    104     83    181
D77V9, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            1            139
  CLUS_2            3            104
  CLUS_3            0             83
  CLUS_4            1            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        1      2      2
  FMR1 WILD-TYPE    222    184    101
D77V10, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            1            222
  CLUS_2            2            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        1      2      0      2
  FMR1 WILD-TYPE    126    117    106    154
D77V11, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            2            117
  CLUS_3            0            106
  CLUS_4            2            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FMR1 MUTATED        1      2      0      0      0      2
  FMR1 WILD-TYPE     98     75    120     57     63     90
D77V12, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            1             98
  CLUS_2            2             75
  CLUS_3            0            120
  CLUS_4            0             57
  CLUS_5            0             63
  CLUS_6            2             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DDX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        1      0      0
  DDX5 WILD-TYPE      8     10      8
D78V1, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5394 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      1      0      0
  DDX5 WILD-TYPE      7      6      7      6
D78V2, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5394 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        1      2      2
  DDX5 WILD-TYPE    226    109    173
D78V3, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1            226
  CLUS_2            2            109
  CLUS_3            2            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        2      1      2      0
  DDX5 WILD-TYPE    207    135    156     13
D78V4, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            207
  CLUS_2            1            135
  CLUS_3            2            156
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        1      1      2      1
  DDX5 WILD-TYPE     90     94    124    116
D78V5, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            2            124
  CLUS_4            1            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        0      3      2
  DDX5 WILD-TYPE     83    157    184
D78V6, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0             83
  CLUS_2            3            157
  CLUS_3            2            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX5 MUTATED        2      1      2      0      0
  DDX5 WILD-TYPE    128    114    104    135     30
D78V7, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1            114
  CLUS_3            2            104
  CLUS_4            0            135
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX5 MUTATED        2      0      1      0      1      1      0
  DDX5 WILD-TYPE    133     71     35     68     90     40     74
D78V8, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            133
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             68
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      2      0      3
  DDX5 WILD-TYPE    140    105     83    179
D78V9, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0            140
  CLUS_2            2            105
  CLUS_3            0             83
  CLUS_4            3            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        1      3      1
  DDX5 WILD-TYPE    222    183    102
D78V10, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1            222
  CLUS_2            3            183
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        1      1      0      3
  DDX5 WILD-TYPE    126    118    106    153
D78V11, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1            118
  CLUS_3            0            106
  CLUS_4            3            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX5 MUTATED        0      1      1      0      0      3
  DDX5 WILD-TYPE     99     76    119     57     63     89
D78V12, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            1             76
  CLUS_3            1            119
  CLUS_4            0             57
  CLUS_5            0             63
  CLUS_6            3             89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = SCN4A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        0      1      0
  SCN4A WILD-TYPE      9      9      8
D79V1, multiclass
[1] "Remove cluster labels:" "SCN4A MUTATED"         
clus
  SCN4A MUTATED SCN4A WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      0      1      0
  SCN4A WILD-TYPE      7      7      6      6
D79V2, multiclass
[1] "Remove cluster labels:" "SCN4A MUTATED"         
clus
  SCN4A MUTATED SCN4A WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        1      1      4
  SCN4A WILD-TYPE    226    110    171
D79V3, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1             226
  CLUS_2             1             110
  CLUS_3             4             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        1      2      3      0
  SCN4A WILD-TYPE    208    134    155     13
D79V4, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1             208
  CLUS_2             2             134
  CLUS_3             3             155
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      1      2      3
  SCN4A WILD-TYPE     91     94    124    114
D79V5, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0              91
  CLUS_2             1              94
  CLUS_3             2             124
  CLUS_4             3             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        1      3      2
  SCN4A WILD-TYPE     82    157    184
D79V6, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1              82
  CLUS_2             3             157
  CLUS_3             2             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN4A MUTATED        0      1      2      3      0
  SCN4A WILD-TYPE    130    114    104    132     30
D79V7, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             130
  CLUS_2             1             114
  CLUS_3             2             104
  CLUS_4             3             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCN4A MUTATED        0      0      0      1      1      1      3
  SCN4A WILD-TYPE    135     71     36     67     90     40     71
D79V8, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             135
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             1              67
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             3              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        1      1      0      4
  SCN4A WILD-TYPE    139    106     83    178
D79V9, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1             139
  CLUS_2             1             106
  CLUS_3             0              83
  CLUS_4             4             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        2      3      1
  SCN4A WILD-TYPE    221    183    102
D79V10, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             2             221
  CLUS_2             3             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      2      0      4
  SCN4A WILD-TYPE    127    117    106    152
D79V11, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2             117
  CLUS_3             0             106
  CLUS_4             4             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCN4A MUTATED        0      2      3      0      0      1
  SCN4A WILD-TYPE     99     75    117     57     63     91
D79V12, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0              99
  CLUS_2             2              75
  CLUS_3             3             117
  CLUS_4             0              57
  CLUS_5             0              63
  CLUS_6             1              91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = CCDC135 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        0      0      0
  CCDC135 WILD-TYPE      9     10      8
D80V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        0      0      0      0
  CCDC135 WILD-TYPE      7      7      7      6
D80V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        3      1      3
  CCDC135 WILD-TYPE    224    110    172
D80V3, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3               224
  CLUS_2               1               110
  CLUS_3               3               172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        2      2      3      0
  CCDC135 WILD-TYPE    207    134    155     13
D80V4, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               2               207
  CLUS_2               2               134
  CLUS_3               3               155
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        1      1      3      0
  CCDC135 WILD-TYPE     90     94    123    117
D80V5, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               1                90
  CLUS_2               1                94
  CLUS_3               3               123
  CLUS_4               0               117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        2      1      2
  CCDC135 WILD-TYPE     81    159    184
D80V6, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               2                81
  CLUS_2               1               159
  CLUS_3               2               184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC135 MUTATED        0      3      1      3      0
  CCDC135 WILD-TYPE    130    112    105    132     30
D80V7, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               0               130
  CLUS_2               3               112
  CLUS_3               1               105
  CLUS_4               3               132
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC135 MUTATED        0      0      0      2      3      2      0
  CCDC135 WILD-TYPE    135     71     36     66     88     39     74
D80V8, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               0               135
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               2                66
  CLUS_5               3                88
  CLUS_6               2                39
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        1      2      2      2
  CCDC135 WILD-TYPE    139    105     81    180
D80V9, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               1               139
  CLUS_2               2               105
  CLUS_3               2                81
  CLUS_4               2               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        3      3      1
  CCDC135 WILD-TYPE    220    183    102
D80V10, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3               220
  CLUS_2               3               183
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        2      1      1      3
  CCDC135 WILD-TYPE    125    118    105    153
D80V11, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               1               118
  CLUS_3               1               105
  CLUS_4               3               153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC135 MUTATED        1      0      2      2      0      2
  CCDC135 WILD-TYPE     98     77    118     55     63     90
D80V12, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               1                98
  CLUS_2               0                77
  CLUS_3               2               118
  CLUS_4               2                55
  CLUS_5               0                63
  CLUS_6               2                90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = MYOCD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED        0      0      0
  MYOCD WILD-TYPE      9     10      8
D81V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        0      0      0      0
  MYOCD WILD-TYPE      7      7      7      6
D81V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED        5      4      0
  MYOCD WILD-TYPE    222    107    175
D81V3, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             5             222
  CLUS_2             4             107
  CLUS_3             0             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        3      6      0      0
  MYOCD WILD-TYPE    206    130    158     13
D81V4, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             3             206
  CLUS_2             6             130
  CLUS_3             0             158
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        3      1      3      2
  MYOCD WILD-TYPE     88     94    123    115
D81V5, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             3              88
  CLUS_2             1              94
  CLUS_3             3             123
  CLUS_4             2             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED        3      3      3
  MYOCD WILD-TYPE     80    157    183
D81V6, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             3              80
  CLUS_2             3             157
  CLUS_3             3             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        2      5      0      1      1
  MYOCD WILD-TYPE    128    110    106    134     29
D81V7, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             2             128
  CLUS_2             5             110
  CLUS_3             0             106
  CLUS_4             1             134
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYOCD MUTATED        1      5      0      2      0      1      0
  MYOCD WILD-TYPE    134     66     36     66     91     40     74
D81V8, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1             134
  CLUS_2             5              66
  CLUS_3             0              36
  CLUS_4             2              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        1      3      0      5
  MYOCD WILD-TYPE    139    104     83    177
D81V9, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1             139
  CLUS_2             3             104
  CLUS_3             0              83
  CLUS_4             5             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED        0      3      6
  MYOCD WILD-TYPE    223    183     97
D81V10, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             0             223
  CLUS_2             3             183
  CLUS_3             6              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        5      1      0      3
  MYOCD WILD-TYPE    122    118    106    153
D81V11, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             5             122
  CLUS_2             1             118
  CLUS_3             0             106
  CLUS_4             3             153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYOCD MUTATED        1      0      2      0      4      2
  MYOCD WILD-TYPE     98     77    118     57     59     90
D81V12, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1              98
  CLUS_2             0              77
  CLUS_3             2             118
  CLUS_4             0              57
  CLUS_5             4              59
  CLUS_6             2              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = TMEM184A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      0      0
  TMEM184A WILD-TYPE      9     10      8
D82V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      0      0      0
  TMEM184A WILD-TYPE      7      7      7      6
D82V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      1      2
  TMEM184A WILD-TYPE    227    110    173
D82V3, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                227
  CLUS_2                1                110
  CLUS_3                2                173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      1      2      0
  TMEM184A WILD-TYPE    209    135    156     13
D82V4, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                209
  CLUS_2                1                135
  CLUS_3                2                156
  CLUS_4                0                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        1      0      1      1
  TMEM184A WILD-TYPE     90     95    125    116
D82V5, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                 90
  CLUS_2                0                 95
  CLUS_3                1                125
  CLUS_4                1                116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      1      2
  TMEM184A WILD-TYPE     83    159    184
D82V6, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 83
  CLUS_2                1                159
  CLUS_3                2                184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        0      1      0      2      0
  TMEM184A WILD-TYPE    130    114    106    133     30
D82V7, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                130
  CLUS_2                1                114
  CLUS_3                0                106
  CLUS_4                2                133
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM184A MUTATED        0      1      0      0      0      0      2
  TMEM184A WILD-TYPE    135     70     36     68     91     41     72
D82V8, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                135
  CLUS_2                1                 70
  CLUS_3                0                 36
  CLUS_4                0                 68
  CLUS_5                0                 91
  CLUS_6                0                 41
  CLUS_7                2                 72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        1      0      0      2
  TMEM184A WILD-TYPE    139    107     83    180
D82V9, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                139
  CLUS_2                0                107
  CLUS_3                0                 83
  CLUS_4                2                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      2      1
  TMEM184A WILD-TYPE    223    184    102
D82V10, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                223
  CLUS_2                2                184
  CLUS_3                1                102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        1      0      0      2
  TMEM184A WILD-TYPE    126    119    106    154
D82V11, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                126
  CLUS_2                0                119
  CLUS_3                0                106
  CLUS_4                2                154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM184A MUTATED        0      0      2      0      1      0
  TMEM184A WILD-TYPE     99     77    118     57     62     92
D82V12, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 99
  CLUS_2                0                 77
  CLUS_3                2                118
  CLUS_4                0                 57
  CLUS_5                1                 62
  CLUS_6                0                 92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = KTELC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        0      0      0
  KTELC1 WILD-TYPE      9     10      8
D83V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        0      0      0      0
  KTELC1 WILD-TYPE      7      7      7      6
D83V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        3      1      1
  KTELC1 WILD-TYPE    224    110    174
D83V3, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              3              224
  CLUS_2              1              110
  CLUS_3              1              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        4      0      1      0
  KTELC1 WILD-TYPE    205    136    157     13
D83V4, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              4              205
  CLUS_2              0              136
  CLUS_3              1              157
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        0      0      3      1
  KTELC1 WILD-TYPE     91     95    123    116
D83V5, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              0               95
  CLUS_3              3              123
  CLUS_4              1              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        0      1      3
  KTELC1 WILD-TYPE     83    159    183
D83V6, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              0               83
  CLUS_2              1              159
  CLUS_3              3              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KTELC1 MUTATED        2      1      1      1      0
  KTELC1 WILD-TYPE    128    114    105    134     30
D83V7, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1              114
  CLUS_3              1              105
  CLUS_4              1              134
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KTELC1 MUTATED        2      0      0      1      1      1      0
  KTELC1 WILD-TYPE    133     71     36     67     90     40     74
D83V8, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              2              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               67
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        0      3      1      1
  KTELC1 WILD-TYPE    140    104     82    181
D83V9, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              0              140
  CLUS_2              3              104
  CLUS_3              1               82
  CLUS_4              1              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        1      0      4
  KTELC1 WILD-TYPE    222    186     99
D83V10, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              1              222
  CLUS_2              0              186
  CLUS_3              4               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        2      1      1      1
  KTELC1 WILD-TYPE    125    118    105    155
D83V11, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              1              118
  CLUS_3              1              105
  CLUS_4              1              155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KTELC1 MUTATED        1      1      0      1      0      2
  KTELC1 WILD-TYPE     98     76    120     56     63     90
D83V12, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              1               98
  CLUS_2              1               76
  CLUS_3              0              120
  CLUS_4              1               56
  CLUS_5              0               63
  CLUS_6              2               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = GPR133 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        0      0      0
  GPR133 WILD-TYPE      9     10      8
D84V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        0      0      0      0
  GPR133 WILD-TYPE      7      7      7      6
D84V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        1      2      1
  GPR133 WILD-TYPE    226    109    174
D84V3, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              226
  CLUS_2              2              109
  CLUS_3              1              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        1      2      1      0
  GPR133 WILD-TYPE    208    134    157     13
D84V4, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              208
  CLUS_2              2              134
  CLUS_3              1              157
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        0      0      3      1
  GPR133 WILD-TYPE     91     95    123    116
D84V5, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              0               95
  CLUS_3              3              123
  CLUS_4              1              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        2      1      1
  GPR133 WILD-TYPE     81    159    185
D84V6, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              2               81
  CLUS_2              1              159
  CLUS_3              1              185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR133 MUTATED        0      1      0      1      2
  GPR133 WILD-TYPE    130    114    106    134     28
D84V7, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              1              114
  CLUS_3              0              106
  CLUS_4              1              134
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR133 MUTATED        1      0      0      1      0      1      1
  GPR133 WILD-TYPE    134     71     36     67     91     40     73
D84V8, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               67
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        1      1      0      2
  GPR133 WILD-TYPE    139    106     83    180
D84V9, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              1              106
  CLUS_3              0               83
  CLUS_4              2              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        1      2      1
  GPR133 WILD-TYPE    222    184    102
D84V10, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              222
  CLUS_2              2              184
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        0      1      0      3
  GPR133 WILD-TYPE    127    118    106    153
D84V11, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              1              118
  CLUS_3              0              106
  CLUS_4              3              153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR133 MUTATED        0      1      2      0      0      1
  GPR133 WILD-TYPE     99     76    118     57     63     91
D84V12, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              0               99
  CLUS_2              1               76
  CLUS_3              2              118
  CLUS_4              0               57
  CLUS_5              0               63
  CLUS_6              1               91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = CDH3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      0      0
  CDH3 WILD-TYPE      9     10      8
D85V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      0      0      0
  CDH3 WILD-TYPE      7      7      7      6
D85V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        1      1      1
  CDH3 WILD-TYPE    226    110    174
D85V3, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1            226
  CLUS_2            1            110
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        1      1      1      0
  CDH3 WILD-TYPE    208    135    157     13
D85V4, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1            208
  CLUS_2            1            135
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      0      1      0
  CDH3 WILD-TYPE     91     95    125    117
D85V5, multiclass
[1] "Remove cluster labels:" "CDH3 MUTATED"          
clus
  CDH3 MUTATED CDH3 WILD-TYPE 
             1            428 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      0      1
  CDH3 WILD-TYPE     83    160    185
D85V6, multiclass
[1] "Remove cluster labels:" "CDH3 MUTATED"          
clus
  CDH3 MUTATED CDH3 WILD-TYPE 
             1            428 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH3 MUTATED        0      1      1      1      0
  CDH3 WILD-TYPE    130    114    105    134     30
D85V7, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            130
  CLUS_2            1            114
  CLUS_3            1            105
  CLUS_4            1            134
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH3 MUTATED        0      0      0      1      1      1      0
  CDH3 WILD-TYPE    135     71     36     67     90     40     74
D85V8, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            135
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             67
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        1      1      0      1
  CDH3 WILD-TYPE    139    106     83    181
D85V9, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1            139
  CLUS_2            1            106
  CLUS_3            0             83
  CLUS_4            1            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        1      1      1
  CDH3 WILD-TYPE    222    185    102
D85V10, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1            222
  CLUS_2            1            185
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      0      1      2
  CDH3 WILD-TYPE    127    119    105    154
D85V11, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            0            119
  CLUS_3            1            105
  CLUS_4            2            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH3 MUTATED        0      0      1      1      0      1
  CDH3 WILD-TYPE     99     77    119     56     63     91
D85V12, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0             99
  CLUS_2            0             77
  CLUS_3            1            119
  CLUS_4            1             56
  CLUS_5            0             63
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = SLC25A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        0      0      1
  SLC25A5 WILD-TYPE      9     10      7
D86V1, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      0      0
  SLC25A5 WILD-TYPE      6      7      7      6
D86V2, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        2      1      1
  SLC25A5 WILD-TYPE    225    110    174
D86V3, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               2               225
  CLUS_2               1               110
  CLUS_3               1               174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        2      2      0      0
  SLC25A5 WILD-TYPE    207    134    158     13
D86V4, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               2               207
  CLUS_2               2               134
  CLUS_3               0               158
  CLUS_4               0                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        0      0      1      1
  SLC25A5 WILD-TYPE     91     95    125    116
D86V5, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                2               427 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7014        TCGA-DU-7015        TCGA-DU-7018 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A6S3        TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A76O        TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A7TB        TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TI 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A7TJ        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-E1-A7YH        TCGA-E1-A7YI 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YJ        TCGA-E1-A7YL        TCGA-E1-A7YM        TCGA-E1-A7YN 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YQ        TCGA-E1-A7YS        TCGA-E1-A7YV        TCGA-E1-A7YW 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YY        TCGA-E1-A7Z2        TCGA-E1-A7Z3        TCGA-EZ-7264 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-F6-A8O3        TCGA-F6-A8O4        TCGA-FG-5962        TCGA-FG-5963 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-FG-A60L        TCGA-FG-A6IZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A6J3        TCGA-FG-A70Y        TCGA-FG-A70Z        TCGA-FG-A710 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A87N        TCGA-FG-A87Q        TCGA-HT-7467        TCGA-HT-7468 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HT-A614 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A615        TCGA-HT-A616        TCGA-HT-A617        TCGA-HT-A618 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A619        TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A74H 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A74J        TCGA-HT-A74L        TCGA-HT-A74O        TCGA-HW-7486 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-7493        TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125        TCGA-KT-A74X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5ET        TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5EX        TCGA-P5-A5EY        TCGA-P5-A5EZ        TCGA-P5-A5F0 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5F1        TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A72U        TCGA-P5-A72W        TCGA-P5-A72X        TCGA-P5-A72Z 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A730        TCGA-P5-A731        TCGA-P5-A733        TCGA-P5-A735 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A736        TCGA-P5-A737        TCGA-P5-A77W        TCGA-P5-A77X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A780        TCGA-P5-A781        TCGA-QH-A65S        TCGA-QH-A65V 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS        TCGA-QH-A6CU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX        TCGA-QH-A6CY 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CZ        TCGA-QH-A6X4        TCGA-QH-A6X5        TCGA-QH-A6X8 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC        TCGA-QH-A86X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A870        TCGA-R8-A6MK        TCGA-R8-A6ML        TCGA-R8-A6MO 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-R8-A6YH        TCGA-RY-A83X        TCGA-RY-A83Y        TCGA-RY-A83Z 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-RY-A843        TCGA-RY-A845        TCGA-S9-A6TS        TCGA-S9-A6TU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6TV        TCGA-S9-A6TX        TCGA-S9-A6TY        TCGA-S9-A6U0 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6U1        TCGA-S9-A6U5        TCGA-S9-A6U6        TCGA-S9-A6U9 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG        TCGA-S9-A6WH 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6WN        TCGA-S9-A6WP        TCGA-S9-A6WQ        TCGA-S9-A7IQ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7IS        TCGA-S9-A7IY        TCGA-S9-A7IZ        TCGA-S9-A7J0 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7QX        TCGA-S9-A7QZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7R1        TCGA-S9-A7R4        TCGA-S9-A7R8        TCGA-TM-A7C5 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TQ-A7RF        TCGA-TQ-A7RG 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RH        TCGA-TQ-A7RK        TCGA-TQ-A7RN        TCGA-TQ-A7RQ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RR        TCGA-TQ-A7RS        TCGA-TQ-A7RV        TCGA-TQ-A7RW 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A8XE        TCGA-VM-A8C8        TCGA-VM-A8C9        TCGA-VM-A8CA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VM-A8CB        TCGA-VM-A8CD        TCGA-VM-A8CE        TCGA-VM-A8CH 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VV-A829        TCGA-VV-A86M        TCGA-VW-A7QS        TCGA-W9-A837 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-WY-A85B        TCGA-WY-A85C        TCGA-WY-A85D 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        1      1      0
  SLC25A5 WILD-TYPE     82    159    186
D86V6, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                2               427 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7014        TCGA-DU-7015        TCGA-DU-7018 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A6S3        TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A76O        TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A7TB        TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TI 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A7TJ        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-E1-A7YH        TCGA-E1-A7YI 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YJ        TCGA-E1-A7YL        TCGA-E1-A7YM        TCGA-E1-A7YN 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YQ        TCGA-E1-A7YS        TCGA-E1-A7YV        TCGA-E1-A7YW 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YY        TCGA-E1-A7Z2        TCGA-E1-A7Z3        TCGA-EZ-7264 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-F6-A8O3        TCGA-F6-A8O4        TCGA-FG-5962        TCGA-FG-5963 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-FG-A60L        TCGA-FG-A6IZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A6J3        TCGA-FG-A70Y        TCGA-FG-A70Z        TCGA-FG-A710 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A87N        TCGA-FG-A87Q        TCGA-HT-7467        TCGA-HT-7468 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HT-A614 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A615        TCGA-HT-A616        TCGA-HT-A617        TCGA-HT-A618 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A619        TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A74H 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A74J        TCGA-HT-A74L        TCGA-HT-A74O        TCGA-HW-7486 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-7493        TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125        TCGA-KT-A74X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5ET        TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5EX        TCGA-P5-A5EY        TCGA-P5-A5EZ        TCGA-P5-A5F0 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5F1        TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A72U        TCGA-P5-A72W        TCGA-P5-A72X        TCGA-P5-A72Z 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A730        TCGA-P5-A731        TCGA-P5-A733        TCGA-P5-A735 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A736        TCGA-P5-A737        TCGA-P5-A77W        TCGA-P5-A77X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A780        TCGA-P5-A781        TCGA-QH-A65S        TCGA-QH-A65V 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS        TCGA-QH-A6CU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX        TCGA-QH-A6CY 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CZ        TCGA-QH-A6X4        TCGA-QH-A6X5        TCGA-QH-A6X8 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC        TCGA-QH-A86X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A870        TCGA-R8-A6MK        TCGA-R8-A6ML        TCGA-R8-A6MO 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-R8-A6YH        TCGA-RY-A83X        TCGA-RY-A83Y        TCGA-RY-A83Z 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-RY-A843        TCGA-RY-A845        TCGA-S9-A6TS        TCGA-S9-A6TU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6TV        TCGA-S9-A6TX        TCGA-S9-A6TY        TCGA-S9-A6U0 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6U1        TCGA-S9-A6U5        TCGA-S9-A6U6        TCGA-S9-A6U9 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG        TCGA-S9-A6WH 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6WN        TCGA-S9-A6WP        TCGA-S9-A6WQ        TCGA-S9-A7IQ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7IS        TCGA-S9-A7IY        TCGA-S9-A7IZ        TCGA-S9-A7J0 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7QX        TCGA-S9-A7QZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7R1        TCGA-S9-A7R4        TCGA-S9-A7R8        TCGA-TM-A7C5 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TQ-A7RF        TCGA-TQ-A7RG 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RH        TCGA-TQ-A7RK        TCGA-TQ-A7RN        TCGA-TQ-A7RQ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RR        TCGA-TQ-A7RS        TCGA-TQ-A7RV        TCGA-TQ-A7RW 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A8XE        TCGA-VM-A8C8        TCGA-VM-A8C9        TCGA-VM-A8CA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VM-A8CB        TCGA-VM-A8CD        TCGA-VM-A8CE        TCGA-VM-A8CH 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VV-A829        TCGA-VV-A86M        TCGA-VW-A7QS        TCGA-W9-A837 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-WY-A85B        TCGA-WY-A85C        TCGA-WY-A85D 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A5 MUTATED        1      1      0      2      0
  SLC25A5 WILD-TYPE    129    114    106    133     30
D86V7, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1               114
  CLUS_3               0               106
  CLUS_4               2               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC25A5 MUTATED        1      0      0      2      0      0      1
  SLC25A5 WILD-TYPE    134     71     36     66     91     41     73
D86V8, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               134
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               2                66
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      1      2
  SLC25A5 WILD-TYPE    139    107     82    180
D86V9, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               139
  CLUS_2               0               107
  CLUS_3               1                82
  CLUS_4               2               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        1      2      1
  SLC25A5 WILD-TYPE    222    184    102
D86V10, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               222
  CLUS_2               2               184
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      1      0      2
  SLC25A5 WILD-TYPE    126    118    106    154
D86V11, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               1               118
  CLUS_3               0               106
  CLUS_4               2               154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC25A5 MUTATED        1      0      2      0      1      0
  SLC25A5 WILD-TYPE     98     77    118     57     62     92
D86V12, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1                98
  CLUS_2               0                77
  CLUS_3               2               118
  CLUS_4               0                57
  CLUS_5               1                62
  CLUS_6               0                92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = LAMA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        0      0      0
  LAMA4 WILD-TYPE      9     10      8
D87V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        0      0      0      0
  LAMA4 WILD-TYPE      7      7      7      6
D87V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        1      2      1
  LAMA4 WILD-TYPE    226    109    174
D87V3, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1             226
  CLUS_2             2             109
  CLUS_3             1             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        1      2      1      0
  LAMA4 WILD-TYPE    208    134    157     13
D87V4, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1             208
  CLUS_2             2             134
  CLUS_3             1             157
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        1      1      1      1
  LAMA4 WILD-TYPE     90     94    125    116
D87V5, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             1              94
  CLUS_3             1             125
  CLUS_4             1             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        2      1      1
  LAMA4 WILD-TYPE     81    159    185
D87V6, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             2              81
  CLUS_2             1             159
  CLUS_3             1             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA4 MUTATED        0      2      0      1      1
  LAMA4 WILD-TYPE    130    113    106    134     29
D87V7, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2             113
  CLUS_3             0             106
  CLUS_4             1             134
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAMA4 MUTATED        1      2      0      0      0      0      1
  LAMA4 WILD-TYPE    134     69     36     68     91     41     73
D87V8, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              68
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        2      0      0      2
  LAMA4 WILD-TYPE    138    107     83    180
D87V9, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             2             138
  CLUS_2             0             107
  CLUS_3             0              83
  CLUS_4             2             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        2      1      1
  LAMA4 WILD-TYPE    221    185    102
D87V10, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             2             221
  CLUS_2             1             185
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        1      1      0      2
  LAMA4 WILD-TYPE    126    118    106    154
D87V11, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1             118
  CLUS_3             0             106
  CLUS_4             2             154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LAMA4 MUTATED        1      1      1      0      1      0
  LAMA4 WILD-TYPE     98     76    119     57     62     92
D87V12, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1              98
  CLUS_2             1              76
  CLUS_3             1             119
  CLUS_4             0              57
  CLUS_5             1              62
  CLUS_6             0              92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = NKD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        0      0      0
  NKD2 WILD-TYPE      9     10      8
D88V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      0      0      0
  NKD2 WILD-TYPE      7      7      7      6
D88V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        2      1      1
  NKD2 WILD-TYPE    225    110    174
D88V3, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            225
  CLUS_2            1            110
  CLUS_3            1            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        2      1      1      0
  NKD2 WILD-TYPE    207    135    157     13
D88V4, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            207
  CLUS_2            1            135
  CLUS_3            1            157
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      0      1      0
  NKD2 WILD-TYPE     91     95    125    117
D88V5, multiclass
[1] "Remove cluster labels:" "NKD2 MUTATED"          
clus
  NKD2 MUTATED NKD2 WILD-TYPE 
             1            428 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L     TCGA-DB-A64O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M     TCGA-DB-A75O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US     TCGA-DU-5847 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        0      0      1
  NKD2 WILD-TYPE     83    160    185
D88V6, multiclass
[1] "Remove cluster labels:" "NKD2 MUTATED"          
clus
  NKD2 MUTATED NKD2 WILD-TYPE 
             1            428 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L     TCGA-DB-A64O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M     TCGA-DB-A75O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US     TCGA-DU-5847 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7014     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8166     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TW     TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A6S8     TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-DU-A7TI     TCGA-DU-A7TJ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YQ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7Z2     TCGA-E1-A7Z3     TCGA-E1-A7Z6     TCGA-EZ-7264 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-F6-A8O3     TCGA-F6-A8O4     TCGA-FG-5962     TCGA-FG-5963 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6IZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A70Y     TCGA-FG-A70Z     TCGA-FG-A710 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87N     TCGA-FG-A87Q     TCGA-HT-7467 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616     TCGA-HT-A617 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A     TCGA-HT-A61B 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L     TCGA-HT-A74O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7493     TCGA-HW-7495     TCGA-HW-8319 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKD2 MUTATED        2      1      1      0      0
  NKD2 WILD-TYPE    128    114    105    135     30
D88V7, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1            114
  CLUS_3            1            105
  CLUS_4            0            135
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NKD2 MUTATED        1      1      1      1      0      0      0
  NKD2 WILD-TYPE    134     70     35     67     91     41     74
D88V8, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1            134
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             67
  CLUS_5            0             91
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      2      1      1
  NKD2 WILD-TYPE    140    105     82    181
D88V9, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            0            140
  CLUS_2            2            105
  CLUS_3            1             82
  CLUS_4            1            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        2      1      1
  NKD2 WILD-TYPE    221    185    102
D88V10, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            221
  CLUS_2            1            185
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        1      1      1      1
  NKD2 WILD-TYPE    126    118    105    155
D88V11, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1            118
  CLUS_3            1            105
  CLUS_4            1            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NKD2 MUTATED        1      0      1      1      1      0
  NKD2 WILD-TYPE     98     77    119     56     62     92
D88V12, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1             98
  CLUS_2            0             77
  CLUS_3            1            119
  CLUS_4            1             56
  CLUS_5            1             62
  CLUS_6            0             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = WRN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      0      0
  WRN WILD-TYPE      9     10      8
D89V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      0      0      0
  WRN WILD-TYPE      7      7      7      6
D89V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      1      4
  WRN WILD-TYPE    227    110    171
D89V3, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           227
  CLUS_2           1           110
  CLUS_3           4           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      4      0
  WRN WILD-TYPE    209    135    154     13
D89V4, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           209
  CLUS_2           1           135
  CLUS_3           4           154
  CLUS_4           0            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      2      1
  WRN WILD-TYPE     91     94    124    116
D89V5, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            91
  CLUS_2           1            94
  CLUS_3           2           124
  CLUS_4           1           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      1      3
  WRN WILD-TYPE     83    159    183
D89V6, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            83
  CLUS_2           1           159
  CLUS_3           3           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        0      1      4      0      0
  WRN WILD-TYPE    130    114    102    135     30
D89V7, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           130
  CLUS_2           1           114
  CLUS_3           4           102
  CLUS_4           0           135
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WRN MUTATED        0      0      2      0      2      1      0
  WRN WILD-TYPE    135     71     34     68     89     40     74
D89V8, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           135
  CLUS_2           0            71
  CLUS_3           2            34
  CLUS_4           0            68
  CLUS_5           2            89
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      3      1
  WRN WILD-TYPE    140    106     80    181
D89V9, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           140
  CLUS_2           1           106
  CLUS_3           3            80
  CLUS_4           1           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      2      1
  WRN WILD-TYPE    221    184    102
D89V10, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2           221
  CLUS_2           2           184
  CLUS_3           1           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      0      4      1
  WRN WILD-TYPE    127    119    102    155
D89V11, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           127
  CLUS_2           0           119
  CLUS_3           4           102
  CLUS_4           1           155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WRN MUTATED        0      0      0      3      0      2
  WRN WILD-TYPE     99     77    120     54     63     90
D89V12, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            99
  CLUS_2           0            77
  CLUS_3           0           120
  CLUS_4           3            54
  CLUS_5           0            63
  CLUS_6           2            90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = PHF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        0      1      1
  PHF3 WILD-TYPE      9      9      7
D90V1, multiclass
[1] "Remove cluster labels:" "PHF3 MUTATED"          
clus
  PHF3 MUTATED PHF3 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311     TCGA-E1-5318 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5322 
"PHF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        1      1      0      0
  PHF3 WILD-TYPE      6      6      7      6
D90V2, multiclass
[1] "Remove cluster labels:" "PHF3 MUTATED"          
clus
  PHF3 MUTATED PHF3 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311     TCGA-E1-5318 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5322 
"PHF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        1      5      2
  PHF3 WILD-TYPE    226    106    173
D90V3, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            1            226
  CLUS_2            5            106
  CLUS_3            2            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        3      3      2      0
  PHF3 WILD-TYPE    206    133    156     13
D90V4, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            3            206
  CLUS_2            3            133
  CLUS_3            2            156
  CLUS_4            0             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        1      1      3      1
  PHF3 WILD-TYPE     90     94    123    116
D90V5, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            3            123
  CLUS_4            1            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        0      2      4
  PHF3 WILD-TYPE     83    158    182
D90V6, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            0             83
  CLUS_2            2            158
  CLUS_3            4            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF3 MUTATED        2      3      2      1      0
  PHF3 WILD-TYPE    128    112    104    134     30
D90V7, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3            112
  CLUS_3            2            104
  CLUS_4            1            134
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF3 MUTATED        2      1      0      1      2      2      0
  PHF3 WILD-TYPE    133     70     36     67     89     39     74
D90V8, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            2            133
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            1             67
  CLUS_5            2             89
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        5      2      0      1
  PHF3 WILD-TYPE    135    105     83    181
D90V9, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            5            135
  CLUS_2            2            105
  CLUS_3            0             83
  CLUS_4            1            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        4      1      3
  PHF3 WILD-TYPE    219    185    100
D90V10, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            4            219
  CLUS_2            1            185
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        2      3      0      2
  PHF3 WILD-TYPE    125    116    106    154
D90V11, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3            116
  CLUS_3            0            106
  CLUS_4            2            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF3 MUTATED        1      1      1      1      2      1
  PHF3 WILD-TYPE     98     76    119     56     61     91
D90V12, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            1             98
  CLUS_2            1             76
  CLUS_3            1            119
  CLUS_4            1             56
  CLUS_5            2             61
  CLUS_6            1             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = AGBL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        0      0      0
  AGBL1 WILD-TYPE      9     10      8
D91V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      0      0      0
  AGBL1 WILD-TYPE      7      7      7      6
D91V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        2      2      1
  AGBL1 WILD-TYPE    225    109    174
D91V3, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             2             225
  CLUS_2             2             109
  CLUS_3             1             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        1      3      1      0
  AGBL1 WILD-TYPE    208    133    157     13
D91V4, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             208
  CLUS_2             3             133
  CLUS_3             1             157
  CLUS_4             0              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      2      3      0
  AGBL1 WILD-TYPE     91     93    123    117
D91V5, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             2              93
  CLUS_3             3             123
  CLUS_4             0             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        0      0      5
  AGBL1 WILD-TYPE     83    160    181
D91V6, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              83
  CLUS_2             0             160
  CLUS_3             5             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGBL1 MUTATED        0      4      1      0      0
  AGBL1 WILD-TYPE    130    111    105    135     30
D91V7, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             4             111
  CLUS_3             1             105
  CLUS_4             0             135
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGBL1 MUTATED        0      2      0      0      1      2      0
  AGBL1 WILD-TYPE    135     69     36     68     90     39     74
D91V8, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0             135
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              68
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        2      2      1      0
  AGBL1 WILD-TYPE    138    105     82    182
D91V9, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             2             138
  CLUS_2             2             105
  CLUS_3             1              82
  CLUS_4             0             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        1      0      4
  AGBL1 WILD-TYPE    222    186     99
D91V10, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             222
  CLUS_2             0             186
  CLUS_3             4              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        2      2      1      0
  AGBL1 WILD-TYPE    125    117    105    156
D91V11, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2             117
  CLUS_3             1             105
  CLUS_4             0             156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AGBL1 MUTATED        0      3      0      0      2      0
  AGBL1 WILD-TYPE     99     74    120     57     61     92
D91V12, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              99
  CLUS_2             3              74
  CLUS_3             0             120
  CLUS_4             0              57
  CLUS_5             2              61
  CLUS_6             0              92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = ZNF148 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        0      0      0
  ZNF148 WILD-TYPE      9     10      8
D92V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        0      0      0      0
  ZNF148 WILD-TYPE      7      7      7      6
D92V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        0      2      2
  ZNF148 WILD-TYPE    227    109    173
D92V3, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              227
  CLUS_2              2              109
  CLUS_3              2              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        0      1      3      0
  ZNF148 WILD-TYPE    209    135    155     13
D92V4, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              209
  CLUS_2              1              135
  CLUS_3              3              155
  CLUS_4              0               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        1      1      1      0
  ZNF148 WILD-TYPE     90     94    125    117
D92V5, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              1               94
  CLUS_3              1              125
  CLUS_4              0              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        0      1      2
  ZNF148 WILD-TYPE     83    159    184
D92V6, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0               83
  CLUS_2              1              159
  CLUS_3              2              184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF148 MUTATED        0      1      2      1      0
  ZNF148 WILD-TYPE    130    114    104    134     30
D92V7, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              1              114
  CLUS_3              2              104
  CLUS_4              1              134
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF148 MUTATED        0      0      0      0      2      1      1
  ZNF148 WILD-TYPE    135     71     36     68     89     40     73
D92V8, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              135
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              0               68
  CLUS_5              2               89
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        1      2      0      1
  ZNF148 WILD-TYPE    139    105     83    181
D92V9, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              1              139
  CLUS_2              2              105
  CLUS_3              0               83
  CLUS_4              1              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        3      0      1
  ZNF148 WILD-TYPE    220    186    102
D92V10, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              3              220
  CLUS_2              0              186
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        1      0      1      2
  ZNF148 WILD-TYPE    126    119    105    154
D92V11, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              0              119
  CLUS_3              1              105
  CLUS_4              2              154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF148 MUTATED        0      0      0      2      0      2
  ZNF148 WILD-TYPE     99     77    120     55     63     90
D92V12, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0               99
  CLUS_2              0               77
  CLUS_3              0              120
  CLUS_4              2               55
  CLUS_5              0               63
  CLUS_6              2               90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
