Loading MAF file: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSig_2CV/LUSC-TP/22506968/LUSC-TP.final_analysis_set.maf
Sorting MAF data ...
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Loading chr01: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr01.txt
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Loading chr02: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr02.txt
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Loading chr03: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr03.txt
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Loading chr04: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr04.txt
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Loading chr05: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr05.txt
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Loading chr06: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr06.txt
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Loading chr07: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr07.txt
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Loading chr08: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr08.txt
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Loading chr09: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr09.txt
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Loading chr10: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr10.txt
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Loading chr11: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr11.txt
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Loading chr12: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr12.txt
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Loading chr13: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr13.txt
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Loading chr14: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr14.txt
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Loading chr15: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr15.txt
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Loading chr16: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr16.txt
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Loading chr17: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr17.txt
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Loading chr18: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr18.txt
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Loading chr19: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr19.txt
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Loading chr20: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr20.txt
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Loading chr21: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr21.txt
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Loading chr22: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr22.txt
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