[1] "ofn"      "-oTOV-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/OV-TP/22555032/OV-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/OV-TP/22534546/transformed.cor.cli.txt"

nPatients in clinical file=596, in cluster file=579, common to both=579
[1]  73 579
[1] "AMP PEAK  1(1P34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          292                           287 
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          292                           287 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          367                           212 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          367                           212 
[1] "AMP PEAK  3(1Q42.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE 
                          322                           257 
  AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE 
                          322                           257 
[1] "AMP PEAK  4(2P23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE 
                          251                           328 
  AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE 
                          251                           328 
[1] "AMP PEAK  5(2Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                          261                           318 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                          261                           318 
[1] "AMP PEAK  6(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          485                            94 
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          485                            94 
[1] "AMP PEAK  7(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                          163                           416 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                          163                           416 
[1] "AMP PEAK  8(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                          113                           466 
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                          113                           466 
[1] "AMP PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           308                            271 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           308                            271 
[1] "AMP PEAK 10(6P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          305                           274 
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          305                           274 
[1] "AMP PEAK 11(7Q36.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE 
                          319                           260 
  AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE 
                          319                           260 
[1] "AMP PEAK 12(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           210                            369 
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           210                            369 
[1] "AMP PEAK 13(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           460                            119 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           460                            119 
[1] "AMP PEAK 14(10P15.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE 
                           252                            327 
  AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE 
                           252                            327 
[1] "AMP PEAK 15(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE 
                           183                            396 
  AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE 
                           183                            396 
[1] "AMP PEAK 16(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           255                            324 
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           255                            324 
[1] "AMP PEAK 17(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            330                             249 
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            330                             249 
[1] "AMP PEAK 18(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE 
                           312                            267 
  AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE 
                           312                            267 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         222                          357 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         222                          357 
[1] "AMP PEAK 20(14Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE 
                           147                            432 
  AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE 
                           147                            432 
[1] "AMP PEAK 21(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE 
                            156                             423 
  AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE 
                            156                             423 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           163                            416 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           163                            416 
[1] "AMP PEAK 23(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE 
                           215                            364 
  AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE 
                           215                            364 
[1] "AMP PEAK 24(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           142                            437 
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           142                            437 
[1] "AMP PEAK 25(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            315                             264 
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            315                             264 
[1] "AMP PEAK 26(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         323                          256 
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         323                          256 
[1] "AMP PEAK 27(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE 
                           245                            334 
  AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE 
                           245                            334 
[1] "AMP PEAK 28(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE 
                         316                          263 
  AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE 
                         316                          263 
[1] "AMP PEAK 29(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE 
                            347                             232 
  AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE 
                            347                             232 
[1] "AMP PEAK 30(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE 
                            401                             178 
  AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE 
                            401                             178 
[1] "AMP PEAK 31(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE 
                            91                            488 
  AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE 
                            91                            488 
[1] "AMP PEAK 32(XP11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE 
                           159                            420 
  AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE 
                           159                            420 
[1] "AMP PEAK 33(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE 
                        220                         359 
  AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE 
                        220                         359 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           269                            310 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           269                            310 
[1] "DEL PEAK  2(1Q41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE 
                         97                         482 
  DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE 
                         97                         482 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                          120                           459 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                          120                           459 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          136                           443 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          136                           443 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          175                           404 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          175                           404 
[1] "DEL PEAK  6(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          210                           369 
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          210                           369 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            84                            495 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            84                            495 
[1] "DEL PEAK  8(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                          394                           185 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                          394                           185 
[1] "DEL PEAK  9(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          421                           158 
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          421                           158 
[1] "DEL PEAK 10(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          355                           224 
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          355                           224 
[1] "DEL PEAK 11(5Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                          419                           160 
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                          419                           160 
[1] "DEL PEAK 12(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        380                         199 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        380                         199 
[1] "DEL PEAK 13(7P22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE 
                          253                           326 
  DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE 
                          253                           326 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          388                           191 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          388                           191 
[1] "DEL PEAK 15(8P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE 
                          406                           173 
  DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE 
                          406                           173 
[1] "DEL PEAK 16(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE 
                          261                           318 
  DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE 
                          261                           318 
[1] "DEL PEAK 17(9Q34.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE 
                           342                            237 
  DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE 
                           342                            237 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           120                            459 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           120                            459 
[1] "DEL PEAK 19(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            223                             356 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            223                             356 
[1] "DEL PEAK 20(10Q25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE 
                           239                            340 
  DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE 
                           239                            340 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           346                            233 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           346                            233 
[1] "DEL PEAK 22(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE 
                         201                          378 
  DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE 
                         201                          378 
[1] "DEL PEAK 23(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE 
                           198                            381 
  DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE 
                           198                            381 
[1] "DEL PEAK 24(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE 
                            220                             359 
  DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE 
                            220                             359 
[1] "DEL PEAK 25(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE 
                           364                            215 
  DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE 
                           364                            215 
[1] "DEL PEAK 26(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE 
                           305                            274 
  DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE 
                           305                            274 
[1] "DEL PEAK 27(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE 
                           300                            279 
  DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE 
                           300                            279 
[1] "DEL PEAK 28(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE 
                           363                            216 
  DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE 
                           363                            216 
[1] "DEL PEAK 29(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE 
                           313                            266 
  DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE 
                           313                            266 
[1] "DEL PEAK 30(16Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE 
                           461                            118 
  DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE 
                           461                            118 
[1] "DEL PEAK 31(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE 
                           452                            127 
  DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE 
                           452                            127 
[1] "DEL PEAK 32(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE 
                         491                           88 
  DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE 
                         491                           88 
[1] "DEL PEAK 33(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE 
                           472                            107 
  DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE 
                           472                            107 
[1] "DEL PEAK 34(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE 
                         381                          198 
  DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE 
                         381                          198 
[1] "DEL PEAK 35(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE 
                           512                             67 
  DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE 
                           512                             67 
[1] "DEL PEAK 36(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE 
                            299                             280 
  DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE 
                            299                             280 
[1] "DEL PEAK 37(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE 
                            285                             294 
  DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE 
                            285                             294 
[1] "DEL PEAK 38(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE 
                           227                            352 
  DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE 
                           227                            352 
[1] "DEL PEAK 39(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE 
                            504                              75 
  DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE 
                            504                              75 
[1] "DEL PEAK 40(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE 
                          358                           221 
  DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE 
                          358                           221 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "MIR_CNMF"                    "MIR_CHIERARCHICAL"          
 [5] "CN_CNMF"                     "METHLYATION_CNMF"           
 [7] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [9] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[11] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[13] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 14 rows and 579 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 579 columns, 0 survival variables, and 14 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "MIR_CNMF"                    "MIR_CHIERARCHICAL"          
 [5] "CN_CNMF"                     "METHLYATION_CNMF"           
 [7] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [9] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[11] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[13] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=10, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       89     55     54     84
  AMP PEAK  1(1P34.3) WILD-TYPE     87     57     64     67
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          89                            87
  CLUS_2                          55                            57
  CLUS_3                          54                            64
  CLUS_4                          84                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED      167     79     36
  AMP PEAK  1(1P34.3) WILD-TYPE    143     79     53
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                         167                           143
  CLUS_2                          79                            79
  CLUS_3                          36                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       91     55    135
  AMP PEAK  1(1P34.3) WILD-TYPE     90     76    108
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          91                            90
  CLUS_2                          55                            76
  CLUS_3                         135                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.3) MUTATED       38      20     36     50     17     42
  AMP PEAK  1(1P34.3) WILD-TYPE     47      37     22     32     17     33
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(1P34.3) MUTATED       17     16     24     21
  AMP PEAK  1(1P34.3) WILD-TYPE     17     20     28     21
D1V4, multiclass
         clus
vv        AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           38                            47
  CLUS_10                          20                            37
  CLUS_2                           36                            22
  CLUS_3                           50                            32
  CLUS_4                           17                            17
  CLUS_5                           42                            33
  CLUS_6                           17                            17
  CLUS_7                           16                            20
  CLUS_8                           24                            28
  CLUS_9                           21                            21
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED      141     43    108
  AMP PEAK  1(1P34.3) WILD-TYPE    101     87     99
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                         141                           101
  CLUS_2                          43                            87
  CLUS_3                         108                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       60     52     74    101
  AMP PEAK  1(1P34.3) WILD-TYPE     53     46    113     69
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          60                            53
  CLUS_2                          52                            46
  CLUS_3                          74                           113
  CLUS_4                         101                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       65    100     40
  AMP PEAK  1(1P34.3) WILD-TYPE     81     89     36
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          65                            81
  CLUS_2                         100                            89
  CLUS_3                          40                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       72     32     31     70
  AMP PEAK  1(1P34.3) WILD-TYPE     71     22     29     84
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          72                            71
  CLUS_2                          32                            22
  CLUS_3                          31                            29
  CLUS_4                          70                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       37     55     59
  AMP PEAK  1(1P34.3) WILD-TYPE     42     54     53
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          37                            42
  CLUS_2                          55                            54
  CLUS_3                          59                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       75     27     49
  AMP PEAK  1(1P34.3) WILD-TYPE     71     32     46
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          75                            71
  CLUS_2                          27                            32
  CLUS_3                          49                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       33     82     67     54
  AMP PEAK  1(1P34.3) WILD-TYPE     38     53     74     46
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          33                            38
  CLUS_2                          82                            53
  CLUS_3                          67                            74
  CLUS_4                          54                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       51     39     97     49
  AMP PEAK  1(1P34.3) WILD-TYPE     54     32     68     57
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          51                            54
  CLUS_2                          39                            32
  CLUS_3                          97                            68
  CLUS_4                          49                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED        5      2      2      5
  AMP PEAK  1(1P34.3) WILD-TYPE      1      4      3      0
D1V13, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           2                             4
  CLUS_3                           2                             3
  CLUS_4                           5                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.3) MUTATED        3      1      1      1      4      4
  AMP PEAK  1(1P34.3) WILD-TYPE      2      1      1      3      1      0
D1V14, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           1                             3
  CLUS_5                           4                             1
  CLUS_6                           4                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED      123     66     71     93
  AMP PEAK  2(1Q21.3) WILD-TYPE     53     46     47     58
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         123                            53
  CLUS_2                          66                            46
  CLUS_3                          71                            47
  CLUS_4                          93                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      194     95     64
  AMP PEAK  2(1Q21.3) WILD-TYPE    116     63     25
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         194                           116
  CLUS_2                          95                            63
  CLUS_3                          64                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      108     80    163
  AMP PEAK  2(1Q21.3) WILD-TYPE     73     51     80
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         108                            73
  CLUS_2                          80                            51
  CLUS_3                         163                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       51      39     38     50     18     49
  AMP PEAK  2(1Q21.3) WILD-TYPE     34      18     20     32     16     26
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(1Q21.3) MUTATED       22     24     39     21
  AMP PEAK  2(1Q21.3) WILD-TYPE     12     12     13     21
D2V4, multiclass
         clus
vv        AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           51                            34
  CLUS_10                          39                            18
  CLUS_2                           38                            20
  CLUS_3                           50                            32
  CLUS_4                           18                            16
  CLUS_5                           49                            26
  CLUS_6                           22                            12
  CLUS_7                           24                            12
  CLUS_8                           39                            13
  CLUS_9                           21                            21
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      195     60    112
  AMP PEAK  2(1Q21.3) WILD-TYPE     47     70     95
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         195                            47
  CLUS_2                          60                            70
  CLUS_3                         112                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       75     70     93    123
  AMP PEAK  2(1Q21.3) WILD-TYPE     38     28     94     47
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          75                            38
  CLUS_2                          70                            28
  CLUS_3                          93                            94
  CLUS_4                         123                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       85    132     42
  AMP PEAK  2(1Q21.3) WILD-TYPE     61     57     34
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          85                            61
  CLUS_2                         132                            57
  CLUS_3                          42                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       79     43     40     97
  AMP PEAK  2(1Q21.3) WILD-TYPE     64     11     20     57
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          79                            64
  CLUS_2                          43                            11
  CLUS_3                          40                            20
  CLUS_4                          97                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       46     73     70
  AMP PEAK  2(1Q21.3) WILD-TYPE     33     36     42
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          46                            33
  CLUS_2                          73                            36
  CLUS_3                          70                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       87     44     58
  AMP PEAK  2(1Q21.3) WILD-TYPE     59     15     37
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          87                            59
  CLUS_2                          44                            15
  CLUS_3                          58                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       44     80     86     73
  AMP PEAK  2(1Q21.3) WILD-TYPE     27     55     55     27
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          44                            27
  CLUS_2                          80                            55
  CLUS_3                          86                            55
  CLUS_4                          73                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       54     42    119     68
  AMP PEAK  2(1Q21.3) WILD-TYPE     51     29     46     38
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          54                            51
  CLUS_2                          42                            29
  CLUS_3                         119                            46
  CLUS_4                          68                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED        3      3      4      5
  AMP PEAK  2(1Q21.3) WILD-TYPE      3      3      1      0
D2V13, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           3                             3
  CLUS_3                           4                             1
  CLUS_4                           5                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED        4      1      1      2      4      3
  AMP PEAK  2(1Q21.3) WILD-TYPE      1      1      1      2      1      1
D2V14, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           2                             2
  CLUS_5                           4                             1
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q42.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED      114     59     57     75
  AMP PEAK  3(1Q42.2) WILD-TYPE     62     53     61     76
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         114                            62
  CLUS_2                          59                            53
  CLUS_3                          57                            61
  CLUS_4                          75                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED      174     74     57
  AMP PEAK  3(1Q42.2) WILD-TYPE    136     84     32
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         174                           136
  CLUS_2                          74                            84
  CLUS_3                          57                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       92     67    145
  AMP PEAK  3(1Q42.2) WILD-TYPE     89     64     98
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          92                            89
  CLUS_2                          67                            64
  CLUS_3                         145                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.2) MUTATED       45      30     36     43     13     44
  AMP PEAK  3(1Q42.2) WILD-TYPE     40      27     22     39     21     31
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(1Q42.2) MUTATED       21     22     37     13
  AMP PEAK  3(1Q42.2) WILD-TYPE     13     14     15     29
D3V4, multiclass
         clus
vv        AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           45                            40
  CLUS_10                          30                            27
  CLUS_2                           36                            22
  CLUS_3                           43                            39
  CLUS_4                           13                            21
  CLUS_5                           44                            31
  CLUS_6                           21                            13
  CLUS_7                           22                            14
  CLUS_8                           37                            15
  CLUS_9                           13                            29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED      174     62     86
  AMP PEAK  3(1Q42.2) WILD-TYPE     68     68    121
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         174                            68
  CLUS_2                          62                            68
  CLUS_3                          86                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED       58     69     75    112
  AMP PEAK  3(1Q42.2) WILD-TYPE     55     29    112     58
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          58                            55
  CLUS_2                          69                            29
  CLUS_3                          75                           112
  CLUS_4                         112                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       83    111     34
  AMP PEAK  3(1Q42.2) WILD-TYPE     63     78     42
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          83                            63
  CLUS_2                         111                            78
  CLUS_3                          34                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED       76     30     32     90
  AMP PEAK  3(1Q42.2) WILD-TYPE     67     24     28     64
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          76                            67
  CLUS_2                          30                            24
  CLUS_3                          32                            28
  CLUS_4                          90                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       41     72     59
  AMP PEAK  3(1Q42.2) WILD-TYPE     38     37     53
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          41                            38
  CLUS_2                          72                            37
  CLUS_3                          59                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       83     41     48
  AMP PEAK  3(1Q42.2) WILD-TYPE     63     18     47
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          83                            63
  CLUS_2                          41                            18
  CLUS_3                          48                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED       36     73     80     55
  AMP PEAK  3(1Q42.2) WILD-TYPE     35     62     61     45
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          36                            35
  CLUS_2                          73                            62
  CLUS_3                          80                            61
  CLUS_4                          55                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED       41     43    101     59
  AMP PEAK  3(1Q42.2) WILD-TYPE     64     28     64     47
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          41                            64
  CLUS_2                          43                            28
  CLUS_3                         101                            64
  CLUS_4                          59                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED        4      4      2      4
  AMP PEAK  3(1Q42.2) WILD-TYPE      2      2      3      1
D3V13, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           4                             2
  CLUS_3                           2                             3
  CLUS_4                           4                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.2) MUTATED        3      1      0      3      3      4
  AMP PEAK  3(1Q42.2) WILD-TYPE      2      1      2      1      2      0
D3V14, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           3                             1
  CLUS_5                           3                             2
  CLUS_6                           4                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED       94     47     46     53
  AMP PEAK  4(2P23.2) WILD-TYPE     82     65     72     98
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          94                            82
  CLUS_2                          47                            65
  CLUS_3                          46                            72
  CLUS_4                          53                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED      122     67     51
  AMP PEAK  4(2P23.2) WILD-TYPE    188     91     38
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                         122                           188
  CLUS_2                          67                            91
  CLUS_3                          51                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       69     55    116
  AMP PEAK  4(2P23.2) WILD-TYPE    112     76    127
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          69                           112
  CLUS_2                          55                            76
  CLUS_3                         116                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P23.2) MUTATED       36      20     26     34     16     30
  AMP PEAK  4(2P23.2) WILD-TYPE     49      37     32     48     18     45
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(2P23.2) MUTATED       20     12     31     15
  AMP PEAK  4(2P23.2) WILD-TYPE     14     24     21     27
D4V4, multiclass
         clus
vv        AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                           36                            49
  CLUS_10                          20                            37
  CLUS_2                           26                            32
  CLUS_3                           34                            48
  CLUS_4                           16                            18
  CLUS_5                           30                            45
  CLUS_6                           20                            14
  CLUS_7                           12                            24
  CLUS_8                           31                            21
  CLUS_9                           15                            27
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED      132     34     85
  AMP PEAK  4(2P23.2) WILD-TYPE    110     96    122
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                         132                           110
  CLUS_2                          34                            96
  CLUS_3                          85                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED       51     40     66     86
  AMP PEAK  4(2P23.2) WILD-TYPE     62     58    121     84
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          51                            62
  CLUS_2                          40                            58
  CLUS_3                          66                           121
  CLUS_4                          86                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       62     88     26
  AMP PEAK  4(2P23.2) WILD-TYPE     84    101     50
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          62                            84
  CLUS_2                          88                           101
  CLUS_3                          26                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED       64     20     22     70
  AMP PEAK  4(2P23.2) WILD-TYPE     79     34     38     84
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          64                            79
  CLUS_2                          20                            34
  CLUS_3                          22                            38
  CLUS_4                          70                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       28     57     54
  AMP PEAK  4(2P23.2) WILD-TYPE     51     52     58
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          28                            51
  CLUS_2                          57                            52
  CLUS_3                          54                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       55     40     44
  AMP PEAK  4(2P23.2) WILD-TYPE     91     19     51
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          55                            91
  CLUS_2                          40                            19
  CLUS_3                          44                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED       31     54     63     45
  AMP PEAK  4(2P23.2) WILD-TYPE     40     81     78     55
D4V11, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          31                            40
  CLUS_2                          54                            81
  CLUS_3                          63                            78
  CLUS_4                          45                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED       37     30     80     46
  AMP PEAK  4(2P23.2) WILD-TYPE     68     41     85     60
D4V12, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          30                            41
  CLUS_3                          80                            85
  CLUS_4                          46                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED        3      2      3      3
  AMP PEAK  4(2P23.2) WILD-TYPE      3      4      2      2
D4V13, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           2                             4
  CLUS_3                           3                             2
  CLUS_4                           3                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P23.2) MUTATED        3      1      0      1      4      2
  AMP PEAK  4(2P23.2) WILD-TYPE      2      1      2      3      1      2
D4V14, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           1                             3
  CLUS_5                           4                             1
  CLUS_6                           2                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED       99     42     42     68
  AMP PEAK  5(2Q31.2) WILD-TYPE     77     70     76     83
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          99                            77
  CLUS_2                          42                            70
  CLUS_3                          42                            76
  CLUS_4                          68                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED      140     64     47
  AMP PEAK  5(2Q31.2) WILD-TYPE    170     94     42
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                         140                           170
  CLUS_2                          64                            94
  CLUS_3                          47                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       79     47    124
  AMP PEAK  5(2Q31.2) WILD-TYPE    102     84    119
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          79                           102
  CLUS_2                          47                            84
  CLUS_3                         124                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q31.2) MUTATED       30      20     32     42     14     36
  AMP PEAK  5(2Q31.2) WILD-TYPE     55      37     26     40     20     39
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(2Q31.2) MUTATED       18     14     31     13
  AMP PEAK  5(2Q31.2) WILD-TYPE     16     22     21     29
D5V4, multiclass
         clus
vv        AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                           30                            55
  CLUS_10                          20                            37
  CLUS_2                           32                            26
  CLUS_3                           42                            40
  CLUS_4                           14                            20
  CLUS_5                           36                            39
  CLUS_6                           18                            16
  CLUS_7                           14                            22
  CLUS_8                           31                            21
  CLUS_9                           13                            29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED      143     21     97
  AMP PEAK  5(2Q31.2) WILD-TYPE     99    109    110
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                         143                            99
  CLUS_2                          21                           109
  CLUS_3                          97                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED       51     48     64     94
  AMP PEAK  5(2Q31.2) WILD-TYPE     62     50    123     76
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          51                            62
  CLUS_2                          48                            50
  CLUS_3                          64                           123
  CLUS_4                          94                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       64     95     25
  AMP PEAK  5(2Q31.2) WILD-TYPE     82     94     51
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          64                            82
  CLUS_2                          95                            94
  CLUS_3                          25                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED       65     22     28     69
  AMP PEAK  5(2Q31.2) WILD-TYPE     78     32     32     85
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          65                            78
  CLUS_2                          22                            32
  CLUS_3                          28                            32
  CLUS_4                          69                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       31     57     50
  AMP PEAK  5(2Q31.2) WILD-TYPE     48     52     62
D5V9, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          31                            48
  CLUS_2                          57                            52
  CLUS_3                          50                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       61     34     43
  AMP PEAK  5(2Q31.2) WILD-TYPE     85     25     52
D5V10, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          61                            85
  CLUS_2                          34                            25
  CLUS_3                          43                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED       29     64     58     56
  AMP PEAK  5(2Q31.2) WILD-TYPE     42     71     83     44
D5V11, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          29                            42
  CLUS_2                          64                            71
  CLUS_3                          58                            83
  CLUS_4                          56                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED       44     34     88     41
  AMP PEAK  5(2Q31.2) WILD-TYPE     61     37     77     65
D5V12, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          44                            61
  CLUS_2                          34                            37
  CLUS_3                          88                            77
  CLUS_4                          41                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED        2      2      3      4
  AMP PEAK  5(2Q31.2) WILD-TYPE      4      4      2      1
D5V13, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           2                             4
  CLUS_3                           3                             2
  CLUS_4                           4                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2Q31.2) MUTATED        2      1      1      1      3      3
  AMP PEAK  5(2Q31.2) WILD-TYPE      3      1      1      3      2      1
D5V14, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           1                             3
  CLUS_5                           3                             2
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED      147     96     85    138
  AMP PEAK  6(3Q26.2) WILD-TYPE     29     16     33     13
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         147                            29
  CLUS_2                          96                            16
  CLUS_3                          85                            33
  CLUS_4                         138                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      257    141     68
  AMP PEAK  6(3Q26.2) WILD-TYPE     53     17     21
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         257                            53
  CLUS_2                         141                            17
  CLUS_3                          68                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      153    106    206
  AMP PEAK  6(3Q26.2) WILD-TYPE     28     25     37
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         153                            28
  CLUS_2                         106                            25
  CLUS_3                         206                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       72      41     44     71     30     63
  AMP PEAK  6(3Q26.2) WILD-TYPE     13      16     14     11      4     12
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(3Q26.2) MUTATED       30     33     45     36
  AMP PEAK  6(3Q26.2) WILD-TYPE      4      3      7      6
D6V4, multiclass
         clus
vv        AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           72                            13
  CLUS_10                          41                            16
  CLUS_2                           44                            14
  CLUS_3                           71                            11
  CLUS_4                           30                             4
  CLUS_5                           63                            12
  CLUS_6                           30                             4
  CLUS_7                           33                             3
  CLUS_8                           45                             7
  CLUS_9                           36                             6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      224     80    181
  AMP PEAK  6(3Q26.2) WILD-TYPE     18     50     26
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         224                            18
  CLUS_2                          80                            50
  CLUS_3                         181                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED      107     78    137    153
  AMP PEAK  6(3Q26.2) WILD-TYPE      6     20     50     17
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         107                             6
  CLUS_2                          78                            20
  CLUS_3                         137                            50
  CLUS_4                         153                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      120    154     64
  AMP PEAK  6(3Q26.2) WILD-TYPE     26     35     12
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         120                            26
  CLUS_2                         154                            35
  CLUS_3                          64                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED      120     49     52    117
  AMP PEAK  6(3Q26.2) WILD-TYPE     23      5      8     37
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         120                            23
  CLUS_2                          49                             5
  CLUS_3                          52                             8
  CLUS_4                         117                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       70     86     97
  AMP PEAK  6(3Q26.2) WILD-TYPE      9     23     15
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          70                             9
  CLUS_2                          86                            23
  CLUS_3                          97                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      123     47     83
  AMP PEAK  6(3Q26.2) WILD-TYPE     23     12     12
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         123                            23
  CLUS_2                          47                            12
  CLUS_3                          83                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED       57    116    115     87
  AMP PEAK  6(3Q26.2) WILD-TYPE     14     19     26     13
D6V11, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          57                            14
  CLUS_2                         116                            19
  CLUS_3                         115                            26
  CLUS_4                          87                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED       84     57    148     86
  AMP PEAK  6(3Q26.2) WILD-TYPE     21     14     17     20
D6V12, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          84                            21
  CLUS_2                          57                            14
  CLUS_3                         148                            17
  CLUS_4                          86                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED        6      4      5      3
  AMP PEAK  6(3Q26.2) WILD-TYPE      0      2      0      2
D6V13, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           6                             0
  CLUS_2                           4                             2
  CLUS_3                           5                             0
  CLUS_4                           3                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.2) MUTATED        5      1      2      3      5      2
  AMP PEAK  6(3Q26.2) WILD-TYPE      0      1      0      1      0      2
D6V14, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           1                             1
  CLUS_3                           2                             0
  CLUS_4                           3                             1
  CLUS_5                           5                             0
  CLUS_6                           2                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       51     31     26     48
  AMP PEAK  7(4P16.3) WILD-TYPE    125     81     92    103
D7V1, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          51                           125
  CLUS_2                          31                            81
  CLUS_3                          26                            92
  CLUS_4                          48                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       80     50     26
  AMP PEAK  7(4P16.3) WILD-TYPE    230    108     63
D7V2, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          80                           230
  CLUS_2                          50                           108
  CLUS_3                          26                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       52     26     78
  AMP PEAK  7(4P16.3) WILD-TYPE    129    105    165
D7V3, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          52                           129
  CLUS_2                          26                           105
  CLUS_3                          78                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED       25      15     12     26      6     28
  AMP PEAK  7(4P16.3) WILD-TYPE     60      42     46     56     28     47
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(4P16.3) MUTATED        7     10     17     10
  AMP PEAK  7(4P16.3) WILD-TYPE     27     26     35     32
D7V4, multiclass
         clus
vv        AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           25                            60
  CLUS_10                          15                            42
  CLUS_2                           12                            46
  CLUS_3                           26                            56
  CLUS_4                            6                            28
  CLUS_5                           28                            47
  CLUS_6                            7                            27
  CLUS_7                           10                            26
  CLUS_8                           17                            35
  CLUS_9                           10                            32
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       65     23     75
  AMP PEAK  7(4P16.3) WILD-TYPE    177    107    132
D7V5, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          65                           177
  CLUS_2                          23                           107
  CLUS_3                          75                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       30     37     47     45
  AMP PEAK  7(4P16.3) WILD-TYPE     83     61    140    125
D7V6, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          30                            83
  CLUS_2                          37                            61
  CLUS_3                          47                           140
  CLUS_4                          45                           125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       38     57     28
  AMP PEAK  7(4P16.3) WILD-TYPE    108    132     48
D7V7, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          38                           108
  CLUS_2                          57                           132
  CLUS_3                          28                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       37     20     18     48
  AMP PEAK  7(4P16.3) WILD-TYPE    106     34     42    106
D7V8, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          37                           106
  CLUS_2                          20                            34
  CLUS_3                          18                            42
  CLUS_4                          48                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       22     39     33
  AMP PEAK  7(4P16.3) WILD-TYPE     57     70     79
D7V9, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          22                            57
  CLUS_2                          39                            70
  CLUS_3                          33                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       45     21     28
  AMP PEAK  7(4P16.3) WILD-TYPE    101     38     67
D7V10, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          45                           101
  CLUS_2                          21                            38
  CLUS_3                          28                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       18     37     38     35
  AMP PEAK  7(4P16.3) WILD-TYPE     53     98    103     65
D7V11, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          18                            53
  CLUS_2                          37                            98
  CLUS_3                          38                           103
  CLUS_4                          35                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       23     25     58     22
  AMP PEAK  7(4P16.3) WILD-TYPE     82     46    107     84
D7V12, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          23                            82
  CLUS_2                          25                            46
  CLUS_3                          58                           107
  CLUS_4                          22                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED        3      1      2      1
  AMP PEAK  7(4P16.3) WILD-TYPE      3      5      3      4
D7V13, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           1                             5
  CLUS_3                           2                             3
  CLUS_4                           1                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4P16.3) MUTATED        3      0      0      1      2      1
  AMP PEAK  7(4P16.3) WILD-TYPE      2      2      2      3      3      3
D7V14, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           0                             2
  CLUS_3                           0                             2
  CLUS_4                           1                             3
  CLUS_5                           2                             3
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       31     23     20     34
  AMP PEAK  8(4Q13.3) WILD-TYPE    145     89     98    117
D8V1, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          31                           145
  CLUS_2                          23                            89
  CLUS_3                          20                            98
  CLUS_4                          34                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       64     31     13
  AMP PEAK  8(4Q13.3) WILD-TYPE    246    127     76
D8V2, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          64                           246
  CLUS_2                          31                           127
  CLUS_3                          13                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       36     20     52
  AMP PEAK  8(4Q13.3) WILD-TYPE    145    111    191
D8V3, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          36                           145
  CLUS_2                          20                           111
  CLUS_3                          52                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(4Q13.3) MUTATED       16      10     11     17      6     19
  AMP PEAK  8(4Q13.3) WILD-TYPE     69      47     47     65     28     56
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(4Q13.3) MUTATED        7      6      9      7
  AMP PEAK  8(4Q13.3) WILD-TYPE     27     30     43     35
D8V4, multiclass
         clus
vv        AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           16                            69
  CLUS_10                          10                            47
  CLUS_2                           11                            47
  CLUS_3                           17                            65
  CLUS_4                            6                            28
  CLUS_5                           19                            56
  CLUS_6                            7                            27
  CLUS_7                            6                            30
  CLUS_8                            9                            43
  CLUS_9                            7                            35
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       44     12     57
  AMP PEAK  8(4Q13.3) WILD-TYPE    198    118    150
D8V5, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          44                           198
  CLUS_2                          12                           118
  CLUS_3                          57                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       22     15     24     48
  AMP PEAK  8(4Q13.3) WILD-TYPE     91     83    163    122
D8V6, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          22                            91
  CLUS_2                          15                            83
  CLUS_3                          24                           163
  CLUS_4                          48                           122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       29     38     17
  AMP PEAK  8(4Q13.3) WILD-TYPE    117    151     59
D8V7, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          29                           117
  CLUS_2                          38                           151
  CLUS_3                          17                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       28     12     14     30
  AMP PEAK  8(4Q13.3) WILD-TYPE    115     42     46    124
D8V8, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          28                           115
  CLUS_2                          12                            42
  CLUS_3                          14                            46
  CLUS_4                          30                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       19     22     22
  AMP PEAK  8(4Q13.3) WILD-TYPE     60     87     90
D8V9, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          22                            87
  CLUS_3                          22                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       34     10     19
  AMP PEAK  8(4Q13.3) WILD-TYPE    112     49     76
D8V10, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          34                           112
  CLUS_2                          10                            49
  CLUS_3                          19                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       17     29     25     19
  AMP PEAK  8(4Q13.3) WILD-TYPE     54    106    116     81
D8V11, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          17                            54
  CLUS_2                          29                           106
  CLUS_3                          25                           116
  CLUS_4                          19                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       18     17     35     20
  AMP PEAK  8(4Q13.3) WILD-TYPE     87     54    130     86
D8V12, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          18                            87
  CLUS_2                          17                            54
  CLUS_3                          35                           130
  CLUS_4                          20                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED        3      0      1      1
  AMP PEAK  8(4Q13.3) WILD-TYPE      3      6      4      4
D8V13, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           0                             6
  CLUS_3                           1                             4
  CLUS_4                           1                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(4Q13.3) MUTATED        3      0      0      0      1      1
  AMP PEAK  8(4Q13.3) WILD-TYPE      2      2      2      4      4      3
D8V14, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           0                             2
  CLUS_3                           0                             2
  CLUS_4                           0                             4
  CLUS_5                           1                             4
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       95     60     58     84
  AMP PEAK  9(5P15.33) WILD-TYPE     81     52     60     67
D9V1, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           95                             81
  CLUS_2                           60                             52
  CLUS_3                           58                             60
  CLUS_4                           84                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED      177     83     37
  AMP PEAK  9(5P15.33) WILD-TYPE    133     75     52
D9V2, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                          177                            133
  CLUS_2                           83                             75
  CLUS_3                           37                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       99     65    134
  AMP PEAK  9(5P15.33) WILD-TYPE     82     66    109
D9V3, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           99                             82
  CLUS_2                           65                             66
  CLUS_3                          134                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5P15.33) MUTATED       43      27     31     46     20     50
  AMP PEAK  9(5P15.33) WILD-TYPE     42      30     27     36     14     25
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(5P15.33) MUTATED       17     13     28     23
  AMP PEAK  9(5P15.33) WILD-TYPE     17     23     24     19
D9V4, multiclass
         clus
vv        AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            43                             42
  CLUS_10                           27                             30
  CLUS_2                            31                             27
  CLUS_3                            46                             36
  CLUS_4                            20                             14
  CLUS_5                            50                             25
  CLUS_6                            17                             17
  CLUS_7                            13                             23
  CLUS_8                            28                             24
  CLUS_9                            23                             19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED      146     41    121
  AMP PEAK  9(5P15.33) WILD-TYPE     96     89     86
D9V5, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                          146                             96
  CLUS_2                           41                             89
  CLUS_3                          121                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       74     44     83    102
  AMP PEAK  9(5P15.33) WILD-TYPE     39     54    104     68
D9V6, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           74                             39
  CLUS_2                           44                             54
  CLUS_3                           83                            104
  CLUS_4                          102                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       78     95     44
  AMP PEAK  9(5P15.33) WILD-TYPE     68     94     32
D9V7, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           78                             68
  CLUS_2                           95                             94
  CLUS_3                           44                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       82     28     36     71
  AMP PEAK  9(5P15.33) WILD-TYPE     61     26     24     83
D9V8, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           82                             61
  CLUS_2                           28                             26
  CLUS_3                           36                             24
  CLUS_4                           71                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       47     58     59
  AMP PEAK  9(5P15.33) WILD-TYPE     32     51     53
D9V9, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           47                             32
  CLUS_2                           58                             51
  CLUS_3                           59                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       91     26     47
  AMP PEAK  9(5P15.33) WILD-TYPE     55     33     48
D9V10, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           91                             55
  CLUS_2                           26                             33
  CLUS_3                           47                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       33     86     71     57
  AMP PEAK  9(5P15.33) WILD-TYPE     38     49     70     43
D9V11, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           33                             38
  CLUS_2                           86                             49
  CLUS_3                           71                             70
  CLUS_4                           57                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       54     38    102     53
  AMP PEAK  9(5P15.33) WILD-TYPE     51     33     63     53
D9V12, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           54                             51
  CLUS_2                           38                             33
  CLUS_3                          102                             63
  CLUS_4                           53                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED        3      3      3      3
  AMP PEAK  9(5P15.33) WILD-TYPE      3      3      2      2
D9V13, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            3                              3
  CLUS_3                            3                              2
  CLUS_4                            3                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(5P15.33) MUTATED        4      2      0      1      4      1
  AMP PEAK  9(5P15.33) WILD-TYPE      1      0      2      3      1      3
D9V14, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            2                              0
  CLUS_3                            0                              2
  CLUS_4                            1                              3
  CLUS_5                            4                              1
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED      114     50     41     87
  AMP PEAK 10(6P22.3) WILD-TYPE     62     62     77     64
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         114                            62
  CLUS_2                          50                            62
  CLUS_3                          41                            77
  CLUS_4                          87                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED      166     71     55
  AMP PEAK 10(6P22.3) WILD-TYPE    144     87     34
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         166                           144
  CLUS_2                          71                            87
  CLUS_3                          55                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       87     68    137
  AMP PEAK 10(6P22.3) WILD-TYPE     94     63    106
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          87                            94
  CLUS_2                          68                            63
  CLUS_3                         137                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P22.3) MUTATED       42      33     23     39     19     46
  AMP PEAK 10(6P22.3) WILD-TYPE     43      24     35     43     15     29
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(6P22.3) MUTATED       20     21     33     16
  AMP PEAK 10(6P22.3) WILD-TYPE     14     15     19     26
D10V4, multiclass
         clus
vv        AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           42                            43
  CLUS_10                          33                            24
  CLUS_2                           23                            35
  CLUS_3                           39                            43
  CLUS_4                           19                            15
  CLUS_5                           46                            29
  CLUS_6                           20                            14
  CLUS_7                           21                            15
  CLUS_8                           33                            19
  CLUS_9                           16                            26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED      147     37    121
  AMP PEAK 10(6P22.3) WILD-TYPE     95     93     86
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         147                            95
  CLUS_2                          37                            93
  CLUS_3                         121                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       64     52     79    103
  AMP PEAK 10(6P22.3) WILD-TYPE     49     46    108     67
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          64                            49
  CLUS_2                          52                            46
  CLUS_3                          79                           108
  CLUS_4                         103                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       81     99     33
  AMP PEAK 10(6P22.3) WILD-TYPE     65     90     43
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          81                            65
  CLUS_2                          99                            90
  CLUS_3                          33                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       73     24     32     84
  AMP PEAK 10(6P22.3) WILD-TYPE     70     30     28     70
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          73                            70
  CLUS_2                          24                            30
  CLUS_3                          32                            28
  CLUS_4                          84                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       41     63     53
  AMP PEAK 10(6P22.3) WILD-TYPE     38     46     59
D10V9, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          41                            38
  CLUS_2                          63                            46
  CLUS_3                          53                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       76     37     44
  AMP PEAK 10(6P22.3) WILD-TYPE     70     22     51
D10V10, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          76                            70
  CLUS_2                          37                            22
  CLUS_3                          44                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       33     74     77     51
  AMP PEAK 10(6P22.3) WILD-TYPE     38     61     64     49
D10V11, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          33                            38
  CLUS_2                          74                            61
  CLUS_3                          77                            64
  CLUS_4                          51                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       56     42     82     55
  AMP PEAK 10(6P22.3) WILD-TYPE     49     29     83     51
D10V12, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          56                            49
  CLUS_2                          42                            29
  CLUS_3                          82                            83
  CLUS_4                          55                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED        2      5      1      5
  AMP PEAK 10(6P22.3) WILD-TYPE      4      1      4      0
D10V13, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           5                             1
  CLUS_3                           1                             4
  CLUS_4                           5                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6P22.3) MUTATED        3      2      0      3      2      3
  AMP PEAK 10(6P22.3) WILD-TYPE      2      0      2      1      3      1
D10V14, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           2                             0
  CLUS_3                           0                             2
  CLUS_4                           3                             1
  CLUS_5                           2                             3
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED      102     52     62     89
  AMP PEAK 11(7Q36.3) WILD-TYPE     74     60     56     62
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         102                            74
  CLUS_2                          52                            60
  CLUS_3                          62                            56
  CLUS_4                          89                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED      176     77     52
  AMP PEAK 11(7Q36.3) WILD-TYPE    134     81     37
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         176                           134
  CLUS_2                          77                            81
  CLUS_3                          52                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED      102     64    138
  AMP PEAK 11(7Q36.3) WILD-TYPE     79     67    105
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         102                            79
  CLUS_2                          64                            67
  CLUS_3                         138                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q36.3) MUTATED       47      34     28     46     19     40
  AMP PEAK 11(7Q36.3) WILD-TYPE     38      23     30     36     15     35
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(7Q36.3) MUTATED       20     20     28     22
  AMP PEAK 11(7Q36.3) WILD-TYPE     14     16     24     20
D11V4, multiclass
         clus
vv        AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           47                            38
  CLUS_10                          34                            23
  CLUS_2                           28                            30
  CLUS_3                           46                            36
  CLUS_4                           19                            15
  CLUS_5                           40                            35
  CLUS_6                           20                            14
  CLUS_7                           20                            16
  CLUS_8                           28                            24
  CLUS_9                           22                            20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED      155     44    120
  AMP PEAK 11(7Q36.3) WILD-TYPE     87     86     87
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         155                            87
  CLUS_2                          44                            86
  CLUS_3                         120                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED       67     50     90    103
  AMP PEAK 11(7Q36.3) WILD-TYPE     46     48     97     67
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          67                            46
  CLUS_2                          50                            48
  CLUS_3                          90                            97
  CLUS_4                         103                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       71    109     40
  AMP PEAK 11(7Q36.3) WILD-TYPE     75     80     36
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          71                            75
  CLUS_2                         109                            80
  CLUS_3                          40                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED       72     24     31     93
  AMP PEAK 11(7Q36.3) WILD-TYPE     71     30     29     61
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          72                            71
  CLUS_2                          24                            30
  CLUS_3                          31                            29
  CLUS_4                          93                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       40     57     60
  AMP PEAK 11(7Q36.3) WILD-TYPE     39     52     52
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          40                            39
  CLUS_2                          57                            52
  CLUS_3                          60                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       74     34     49
  AMP PEAK 11(7Q36.3) WILD-TYPE     72     25     46
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          74                            72
  CLUS_2                          34                            25
  CLUS_3                          49                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED       33     70     83     58
  AMP PEAK 11(7Q36.3) WILD-TYPE     38     65     58     42
D11V11, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          33                            38
  CLUS_2                          70                            65
  CLUS_3                          83                            58
  CLUS_4                          58                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED       55     40     85     64
  AMP PEAK 11(7Q36.3) WILD-TYPE     50     31     80     42
D11V12, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          55                            50
  CLUS_2                          40                            31
  CLUS_3                          85                            80
  CLUS_4                          64                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED        4      2      2      3
  AMP PEAK 11(7Q36.3) WILD-TYPE      2      4      3      2
D11V13, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           2                             4
  CLUS_3                           2                             3
  CLUS_4                           3                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q36.3) MUTATED        2      1      1      1      3      3
  AMP PEAK 11(7Q36.3) WILD-TYPE      3      1      1      3      2      1
D11V14, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           1                             3
  CLUS_5                           3                             2
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       73     41     36     49
  AMP PEAK 12(8P11.21) WILD-TYPE    103     71     82    102
D12V1, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           73                            103
  CLUS_2                           41                             71
  CLUS_3                           36                             82
  CLUS_4                           49                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED      106     55     38
  AMP PEAK 12(8P11.21) WILD-TYPE    204    103     51
D12V2, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                          106                            204
  CLUS_2                           55                            103
  CLUS_3                           38                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       55     40    103
  AMP PEAK 12(8P11.21) WILD-TYPE    126     91    140
D12V3, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           55                            126
  CLUS_2                           40                             91
  CLUS_3                          103                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8P11.21) MUTATED       22      19     21     31     13     31
  AMP PEAK 12(8P11.21) WILD-TYPE     63      38     37     51     21     44
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(8P11.21) MUTATED       16     11     21     13
  AMP PEAK 12(8P11.21) WILD-TYPE     18     25     31     29
D12V4, multiclass
         clus
vv        AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            22                             63
  CLUS_10                           19                             38
  CLUS_2                            21                             37
  CLUS_3                            31                             51
  CLUS_4                            13                             21
  CLUS_5                            31                             44
  CLUS_6                            16                             18
  CLUS_7                            11                             25
  CLUS_8                            21                             31
  CLUS_9                            13                             29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED      114     27     69
  AMP PEAK 12(8P11.21) WILD-TYPE    128    103    138
D12V5, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                          114                            128
  CLUS_2                           27                            103
  CLUS_3                           69                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       49     44     45     68
  AMP PEAK 12(8P11.21) WILD-TYPE     64     54    142    102
D12V6, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           49                             64
  CLUS_2                           44                             54
  CLUS_3                           45                            142
  CLUS_4                           68                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       41     76     29
  AMP PEAK 12(8P11.21) WILD-TYPE    105    113     47
D12V7, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           41                            105
  CLUS_2                           76                            113
  CLUS_3                           29                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       43     21     24     58
  AMP PEAK 12(8P11.21) WILD-TYPE    100     33     36     96
D12V8, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           43                            100
  CLUS_2                           21                             33
  CLUS_3                           24                             36
  CLUS_4                           58                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       22     45     38
  AMP PEAK 12(8P11.21) WILD-TYPE     57     64     74
D12V9, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           22                             57
  CLUS_2                           45                             64
  CLUS_3                           38                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       47     26     32
  AMP PEAK 12(8P11.21) WILD-TYPE     99     33     63
D12V10, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           47                             99
  CLUS_2                           26                             33
  CLUS_3                           32                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       25     49     48     36
  AMP PEAK 12(8P11.21) WILD-TYPE     46     86     93     64
D12V11, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           25                             46
  CLUS_2                           49                             86
  CLUS_3                           48                             93
  CLUS_4                           36                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       30     24     65     39
  AMP PEAK 12(8P11.21) WILD-TYPE     75     47    100     67
D12V12, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           30                             75
  CLUS_2                           24                             47
  CLUS_3                           65                            100
  CLUS_4                           39                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED        2      2      2      4
  AMP PEAK 12(8P11.21) WILD-TYPE      4      4      3      1
D12V13, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                              4
  CLUS_3                            2                              3
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.21) MUTATED        2      1      1      1      3      2
  AMP PEAK 12(8P11.21) WILD-TYPE      3      1      1      3      2      2
D12V14, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            1                              1
  CLUS_3                            1                              1
  CLUS_4                            1                              3
  CLUS_5                            3                              2
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED      120     99     93    129
  AMP PEAK 13(8Q24.21) WILD-TYPE     56     13     25     22
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          120                             56
  CLUS_2                           99                             13
  CLUS_3                           93                             25
  CLUS_4                          129                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      244    144     53
  AMP PEAK 13(8Q24.21) WILD-TYPE     66     14     36
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          244                             66
  CLUS_2                          144                             14
  CLUS_3                           53                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      148    106    186
  AMP PEAK 13(8Q24.21) WILD-TYPE     33     25     57
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          148                             33
  CLUS_2                          106                             25
  CLUS_3                          186                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q24.21) MUTATED       71      46     43     67     31     64
  AMP PEAK 13(8Q24.21) WILD-TYPE     14      11     15     15      3     11
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(8Q24.21) MUTATED       24     26     30     38
  AMP PEAK 13(8Q24.21) WILD-TYPE     10     10     22      4
D13V4, multiclass
         clus
vv        AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            71                             14
  CLUS_10                           46                             11
  CLUS_2                            43                             15
  CLUS_3                            67                             15
  CLUS_4                            31                              3
  CLUS_5                            64                             11
  CLUS_6                            24                             10
  CLUS_7                            26                             10
  CLUS_8                            30                             22
  CLUS_9                            38                              4
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      175     83    202
  AMP PEAK 13(8Q24.21) WILD-TYPE     67     47      5
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          175                             67
  CLUS_2                           83                             47
  CLUS_3                          202                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       94     67    152    136
  AMP PEAK 13(8Q24.21) WILD-TYPE     19     31     35     34
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           94                             19
  CLUS_2                           67                             31
  CLUS_3                          152                             35
  CLUS_4                          136                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      120    147     62
  AMP PEAK 13(8Q24.21) WILD-TYPE     26     42     14
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          120                             26
  CLUS_2                          147                             42
  CLUS_3                           62                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED      118     48     50    113
  AMP PEAK 13(8Q24.21) WILD-TYPE     25      6     10     41
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          118                             25
  CLUS_2                           48                              6
  CLUS_3                           50                             10
  CLUS_4                          113                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       71     72    105
  AMP PEAK 13(8Q24.21) WILD-TYPE      8     37      7
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           71                              8
  CLUS_2                           72                             37
  CLUS_3                          105                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      120     38     90
  AMP PEAK 13(8Q24.21) WILD-TYPE     26     21      5
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          120                             26
  CLUS_2                           38                             21
  CLUS_3                           90                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       61    109    105     80
  AMP PEAK 13(8Q24.21) WILD-TYPE     10     26     36     20
D13V11, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           61                             10
  CLUS_2                          109                             26
  CLUS_3                          105                             36
  CLUS_4                           80                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       91     51    131     82
  AMP PEAK 13(8Q24.21) WILD-TYPE     14     20     34     24
D13V12, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           91                             14
  CLUS_2                           51                             20
  CLUS_3                          131                             34
  CLUS_4                           82                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED        6      4      5      4
  AMP PEAK 13(8Q24.21) WILD-TYPE      0      2      0      1
D13V13, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            6                              0
  CLUS_2                            4                              2
  CLUS_3                            5                              0
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q24.21) MUTATED        5      1      2      3      4      4
  AMP PEAK 13(8Q24.21) WILD-TYPE      0      1      0      1      1      0
D13V14, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            5                              0
  CLUS_2                            1                              1
  CLUS_3                            2                              0
  CLUS_4                            3                              1
  CLUS_5                            4                              1
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED       87     49     37     70
  AMP PEAK 14(10P15.3) WILD-TYPE     89     63     81     81
D14V1, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           87                             89
  CLUS_2                           49                             63
  CLUS_3                           37                             81
  CLUS_4                           70                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED      130     65     48
  AMP PEAK 14(10P15.3) WILD-TYPE    180     93     41
D14V2, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                          130                            180
  CLUS_2                           65                             93
  CLUS_3                           48                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       82     44    116
  AMP PEAK 14(10P15.3) WILD-TYPE     99     87    127
D14V3, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           82                             99
  CLUS_2                           44                             87
  CLUS_3                          116                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10P15.3) MUTATED       32      21     25     40     20     30
  AMP PEAK 14(10P15.3) WILD-TYPE     53      36     33     42     14     45
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 14(10P15.3) MUTATED       18     15     28     13
  AMP PEAK 14(10P15.3) WILD-TYPE     16     21     24     29
D14V4, multiclass
         clus
vv        AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            32                             53
  CLUS_10                           21                             36
  CLUS_2                            25                             33
  CLUS_3                            40                             42
  CLUS_4                            20                             14
  CLUS_5                            30                             45
  CLUS_6                            18                             16
  CLUS_7                            15                             21
  CLUS_8                            28                             24
  CLUS_9                            13                             29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED      146     30     76
  AMP PEAK 14(10P15.3) WILD-TYPE     96    100    131
D14V5, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                          146                             96
  CLUS_2                           30                            100
  CLUS_3                           76                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED       56     46     49     94
  AMP PEAK 14(10P15.3) WILD-TYPE     57     52    138     76
D14V6, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           56                             57
  CLUS_2                           46                             52
  CLUS_3                           49                            138
  CLUS_4                           94                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       63     89     29
  AMP PEAK 14(10P15.3) WILD-TYPE     83    100     47
D14V7, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           63                             83
  CLUS_2                           89                            100
  CLUS_3                           29                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED       62     25     26     68
  AMP PEAK 14(10P15.3) WILD-TYPE     81     29     34     86
D14V8, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           62                             81
  CLUS_2                           25                             29
  CLUS_3                           26                             34
  CLUS_4                           68                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       25     55     45
  AMP PEAK 14(10P15.3) WILD-TYPE     54     54     67
D14V9, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           25                             54
  CLUS_2                           55                             54
  CLUS_3                           45                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       56     32     37
  AMP PEAK 14(10P15.3) WILD-TYPE     90     27     58
D14V10, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           56                             90
  CLUS_2                           32                             27
  CLUS_3                           37                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED       30     57     58     47
  AMP PEAK 14(10P15.3) WILD-TYPE     41     78     83     53
D14V11, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           30                             41
  CLUS_2                           57                             78
  CLUS_3                           58                             83
  CLUS_4                           47                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED       37     33     82     40
  AMP PEAK 14(10P15.3) WILD-TYPE     68     38     83     66
D14V12, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           37                             68
  CLUS_2                           33                             38
  CLUS_3                           82                             83
  CLUS_4                           40                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED        5      3      2      4
  AMP PEAK 14(10P15.3) WILD-TYPE      1      3      3      1
D14V13, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            3                              3
  CLUS_3                            2                              3
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10P15.3) MUTATED        4      1      0      2      4      3
  AMP PEAK 14(10P15.3) WILD-TYPE      1      1      2      2      1      1
D14V14, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            1                              1
  CLUS_3                            0                              2
  CLUS_4                            2                              2
  CLUS_5                            4                              1
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED       56     42     35     45
  AMP PEAK 15(10Q22.3) WILD-TYPE    120     70     83    106
D15V1, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           56                            120
  CLUS_2                           42                             70
  CLUS_3                           35                             83
  CLUS_4                           45                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       90     55     33
  AMP PEAK 15(10Q22.3) WILD-TYPE    220    103     56
D15V2, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           90                            220
  CLUS_2                           55                            103
  CLUS_3                           33                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       54     46     78
  AMP PEAK 15(10Q22.3) WILD-TYPE    127     85    165
D15V3, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           54                            127
  CLUS_2                           46                             85
  CLUS_3                           78                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(10Q22.3) MUTATED       23      19     17     31     11     23
  AMP PEAK 15(10Q22.3) WILD-TYPE     62      38     41     51     23     52
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(10Q22.3) MUTATED       10     11     17     16
  AMP PEAK 15(10Q22.3) WILD-TYPE     24     25     35     26
D15V4, multiclass
         clus
vv        AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                            23                             62
  CLUS_10                           19                             38
  CLUS_2                            17                             41
  CLUS_3                            31                             51
  CLUS_4                            11                             23
  CLUS_5                            23                             52
  CLUS_6                            10                             24
  CLUS_7                            11                             25
  CLUS_8                            17                             35
  CLUS_9                            16                             26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       86     30     67
  AMP PEAK 15(10Q22.3) WILD-TYPE    156    100    140
D15V5, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           86                            156
  CLUS_2                           30                            100
  CLUS_3                           67                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED       53     34     43     49
  AMP PEAK 15(10Q22.3) WILD-TYPE     60     64    144    121
D15V6, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           53                             60
  CLUS_2                           34                             64
  CLUS_3                           43                            144
  CLUS_4                           49                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       43     58     25
  AMP PEAK 15(10Q22.3) WILD-TYPE    103    131     51
D15V7, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           43                            103
  CLUS_2                           58                            131
  CLUS_3                           25                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED       44     16     16     50
  AMP PEAK 15(10Q22.3) WILD-TYPE     99     38     44    104
D15V8, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           44                             99
  CLUS_2                           16                             38
  CLUS_3                           16                             44
  CLUS_4                           50                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       21     36     38
  AMP PEAK 15(10Q22.3) WILD-TYPE     58     73     74
D15V9, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           36                             73
  CLUS_3                           38                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       42     20     33
  AMP PEAK 15(10Q22.3) WILD-TYPE    104     39     62
D15V10, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           42                            104
  CLUS_2                           20                             39
  CLUS_3                           33                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED       22     49     42     31
  AMP PEAK 15(10Q22.3) WILD-TYPE     49     86     99     69
D15V11, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           22                             49
  CLUS_2                           49                             86
  CLUS_3                           42                             99
  CLUS_4                           31                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED       33     20     59     32
  AMP PEAK 15(10Q22.3) WILD-TYPE     72     51    106     74
D15V12, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           20                             51
  CLUS_3                           59                            106
  CLUS_4                           32                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED        3      3      2      3
  AMP PEAK 15(10Q22.3) WILD-TYPE      3      3      3      2
D15V13, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            3                              3
  CLUS_3                            2                              3
  CLUS_4                            3                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(10Q22.3) MUTATED        3      0      0      3      3      2
  AMP PEAK 15(10Q22.3) WILD-TYPE      2      2      2      1      2      2
D15V14, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            3                              1
  CLUS_5                            3                              2
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED       70     47     49     79
  AMP PEAK 16(11Q14.1) WILD-TYPE    106     65     69     72
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           70                            106
  CLUS_2                           47                             65
  CLUS_3                           49                             69
  CLUS_4                           79                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED      153     66     26
  AMP PEAK 16(11Q14.1) WILD-TYPE    157     92     63
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                          153                            157
  CLUS_2                           66                             92
  CLUS_3                           26                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       80     57    107
  AMP PEAK 16(11Q14.1) WILD-TYPE    101     74    136
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           80                            101
  CLUS_2                           57                             74
  CLUS_3                          107                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q14.1) MUTATED       35      20     29     41     15     29
  AMP PEAK 16(11Q14.1) WILD-TYPE     50      37     29     41     19     46
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(11Q14.1) MUTATED       15     19     18     23
  AMP PEAK 16(11Q14.1) WILD-TYPE     19     17     34     19
D16V4, multiclass
         clus
vv        AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            35                             50
  CLUS_10                           20                             37
  CLUS_2                            29                             29
  CLUS_3                            41                             41
  CLUS_4                            15                             19
  CLUS_5                            29                             46
  CLUS_6                            15                             19
  CLUS_7                            19                             17
  CLUS_8                            18                             34
  CLUS_9                            23                             19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED      108     34    113
  AMP PEAK 16(11Q14.1) WILD-TYPE    134     96     94
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                          108                            134
  CLUS_2                           34                             96
  CLUS_3                          113                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED       56     30     79     85
  AMP PEAK 16(11Q14.1) WILD-TYPE     57     68    108     85
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           56                             57
  CLUS_2                           30                             68
  CLUS_3                           79                            108
  CLUS_4                           85                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       56     86     34
  AMP PEAK 16(11Q14.1) WILD-TYPE     90    103     42
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           56                             90
  CLUS_2                           86                            103
  CLUS_3                           34                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED       58     27     28     63
  AMP PEAK 16(11Q14.1) WILD-TYPE     85     27     32     91
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           58                             85
  CLUS_2                           27                             27
  CLUS_3                           28                             32
  CLUS_4                           63                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       40     44     56
  AMP PEAK 16(11Q14.1) WILD-TYPE     39     65     56
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           40                             39
  CLUS_2                           44                             65
  CLUS_3                           56                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       75     18     47
  AMP PEAK 16(11Q14.1) WILD-TYPE     71     41     48
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           75                             71
  CLUS_2                           18                             41
  CLUS_3                           47                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED       29     67     60     48
  AMP PEAK 16(11Q14.1) WILD-TYPE     42     68     81     52
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           29                             42
  CLUS_2                           67                             68
  CLUS_3                           60                             81
  CLUS_4                           48                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED       48     30     78     48
  AMP PEAK 16(11Q14.1) WILD-TYPE     57     41     87     58
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           48                             57
  CLUS_2                           30                             41
  CLUS_3                           78                             87
  CLUS_4                           48                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED        4      1      2      3
  AMP PEAK 16(11Q14.1) WILD-TYPE      2      5      3      2
D16V13, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            1                              5
  CLUS_3                            2                              3
  CLUS_4                            3                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED        3      0      1      1      2      3
  AMP PEAK 16(11Q14.1) WILD-TYPE      2      2      1      3      3      1
D16V14, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            1                              3
  CLUS_5                            2                              3
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED      120     59     57     79
  AMP PEAK 17(12P13.33) WILD-TYPE     56     53     61     72
D17V1, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           120                              56
  CLUS_2                            59                              53
  CLUS_3                            57                              61
  CLUS_4                            79                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED      175     77     63
  AMP PEAK 17(12P13.33) WILD-TYPE    135     81     26
D17V2, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           175                             135
  CLUS_2                            77                              81
  CLUS_3                            63                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       94     73    147
  AMP PEAK 17(12P13.33) WILD-TYPE     87     58     96
D17V3, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            94                              87
  CLUS_2                            73                              58
  CLUS_3                           147                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12P13.33) MUTATED       41      28     34     48     19     40
  AMP PEAK 17(12P13.33) WILD-TYPE     44      29     24     34     15     35
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(12P13.33) MUTATED       25     18     39     22
  AMP PEAK 17(12P13.33) WILD-TYPE      9     18     13     20
D17V4, multiclass
         clus
vv        AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                             41                              44
  CLUS_10                            28                              29
  CLUS_2                             34                              24
  CLUS_3                             48                              34
  CLUS_4                             19                              15
  CLUS_5                             40                              35
  CLUS_6                             25                               9
  CLUS_7                             18                              18
  CLUS_8                             39                              13
  CLUS_9                             22                              20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED      174     50    106
  AMP PEAK 17(12P13.33) WILD-TYPE     68     80    101
D17V5, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           174                              68
  CLUS_2                            50                              80
  CLUS_3                           106                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED       65     65     79    114
  AMP PEAK 17(12P13.33) WILD-TYPE     48     33    108     56
D17V6, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            65                              48
  CLUS_2                            65                              33
  CLUS_3                            79                             108
  CLUS_4                           114                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       81    113     35
  AMP PEAK 17(12P13.33) WILD-TYPE     65     76     41
D17V7, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            81                              65
  CLUS_2                           113                              76
  CLUS_3                            35                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED       73     32     39     85
  AMP PEAK 17(12P13.33) WILD-TYPE     70     22     21     69
D17V8, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            73                              70
  CLUS_2                            32                              22
  CLUS_3                            39                              21
  CLUS_4                            85                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       37     72     56
  AMP PEAK 17(12P13.33) WILD-TYPE     42     37     56
D17V9, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            37                              42
  CLUS_2                            72                              37
  CLUS_3                            56                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       83     37     45
  AMP PEAK 17(12P13.33) WILD-TYPE     63     22     50
D17V10, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            83                              63
  CLUS_2                            37                              22
  CLUS_3                            45                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED       39     68     78     65
  AMP PEAK 17(12P13.33) WILD-TYPE     32     67     63     35
D17V11, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            39                              32
  CLUS_2                            68                              67
  CLUS_3                            78                              63
  CLUS_4                            65                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED       45     45    103     57
  AMP PEAK 17(12P13.33) WILD-TYPE     60     26     62     49
D17V12, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            45                              60
  CLUS_2                            45                              26
  CLUS_3                           103                              62
  CLUS_4                            57                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED        3      3      3      5
  AMP PEAK 17(12P13.33) WILD-TYPE      3      3      2      0
D17V13, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             3                               3
  CLUS_3                             3                               2
  CLUS_4                             5                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED        2      1      1      2      5      3
  AMP PEAK 17(12P13.33) WILD-TYPE      3      1      1      2      0      1
D17V14, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             1                               1
  CLUS_3                             1                               1
  CLUS_4                             2                               2
  CLUS_5                             5                               0
  CLUS_6                             3                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED      112     62     49     74
  AMP PEAK 18(12P12.1) WILD-TYPE     64     50     69     77
D18V1, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          112                             64
  CLUS_2                           62                             50
  CLUS_3                           49                             69
  CLUS_4                           74                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED      164     79     54
  AMP PEAK 18(12P12.1) WILD-TYPE    146     79     35
D18V2, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          164                            146
  CLUS_2                           79                             79
  CLUS_3                           54                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       94     69    133
  AMP PEAK 18(12P12.1) WILD-TYPE     87     62    110
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           94                             87
  CLUS_2                           69                             62
  CLUS_3                          133                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P12.1) MUTATED       40      27     31     47     20     37
  AMP PEAK 18(12P12.1) WILD-TYPE     45      30     27     35     14     38
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(12P12.1) MUTATED       21     17     39     17
  AMP PEAK 18(12P12.1) WILD-TYPE     13     19     13     25
D18V4, multiclass
         clus
vv        AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                            40                             45
  CLUS_10                           27                             30
  CLUS_2                            31                             27
  CLUS_3                            47                             35
  CLUS_4                            20                             14
  CLUS_5                            37                             38
  CLUS_6                            21                             13
  CLUS_7                            17                             19
  CLUS_8                            39                             13
  CLUS_9                            17                             25
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED      173     46     93
  AMP PEAK 18(12P12.1) WILD-TYPE     69     84    114
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          173                             69
  CLUS_2                           46                             84
  CLUS_3                           93                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED       72     64     64    105
  AMP PEAK 18(12P12.1) WILD-TYPE     41     34    123     65
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           72                             41
  CLUS_2                           64                             34
  CLUS_3                           64                            123
  CLUS_4                          105                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       81    102     33
  AMP PEAK 18(12P12.1) WILD-TYPE     65     87     43
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           81                             65
  CLUS_2                          102                             87
  CLUS_3                           33                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED       75     26     36     79
  AMP PEAK 18(12P12.1) WILD-TYPE     68     28     24     75
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           75                             68
  CLUS_2                           26                             28
  CLUS_3                           36                             24
  CLUS_4                           79                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       31     71     62
  AMP PEAK 18(12P12.1) WILD-TYPE     48     38     50
D18V9, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           31                             48
  CLUS_2                           71                             38
  CLUS_3                           62                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       68     42     54
  AMP PEAK 18(12P12.1) WILD-TYPE     78     17     41
D18V10, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           68                             78
  CLUS_2                           42                             17
  CLUS_3                           54                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED       40     66     76     56
  AMP PEAK 18(12P12.1) WILD-TYPE     31     69     65     44
D18V11, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           40                             31
  CLUS_2                           66                             69
  CLUS_3                           76                             65
  CLUS_4                           56                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED       42     44    100     52
  AMP PEAK 18(12P12.1) WILD-TYPE     63     27     65     54
D18V12, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           42                             63
  CLUS_2                           44                             27
  CLUS_3                          100                             65
  CLUS_4                           52                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED        3      1      3      5
  AMP PEAK 18(12P12.1) WILD-TYPE      3      5      2      0
D18V13, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            1                              5
  CLUS_3                            3                              2
  CLUS_4                            5                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P12.1) MUTATED        3      0      0      1      5      3
  AMP PEAK 18(12P12.1) WILD-TYPE      2      2      2      3      0      1
D18V14, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            1                              3
  CLUS_5                            5                              0
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       92     41     27     51
  AMP PEAK 19(12Q15) WILD-TYPE     84     71     91    100
D19V1, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         92                           84
  CLUS_2                         41                           71
  CLUS_3                         27                           91
  CLUS_4                         51                          100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED      117     54     40
  AMP PEAK 19(12Q15) WILD-TYPE    193    104     49
D19V2, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        117                          193
  CLUS_2                         54                          104
  CLUS_3                         40                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       74     47     89
  AMP PEAK 19(12Q15) WILD-TYPE    107     84    154
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         74                          107
  CLUS_2                         47                           84
  CLUS_3                         89                          154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       31      13     23     29     15     24
  AMP PEAK 19(12Q15) WILD-TYPE     54      44     35     53     19     51
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(12Q15) MUTATED       15     16     33     11
  AMP PEAK 19(12Q15) WILD-TYPE     19     20     19     31
D19V4, multiclass
         clus
vv        AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          31                           54
  CLUS_10                         13                           44
  CLUS_2                          23                           35
  CLUS_3                          29                           53
  CLUS_4                          15                           19
  CLUS_5                          24                           51
  CLUS_6                          15                           19
  CLUS_7                          16                           20
  CLUS_8                          33                           19
  CLUS_9                          11                           31
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED      130     39     53
  AMP PEAK 19(12Q15) WILD-TYPE    112     91    154
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        130                          112
  CLUS_2                         39                           91
  CLUS_3                         53                          154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       54     51     37     75
  AMP PEAK 19(12Q15) WILD-TYPE     59     47    150     95
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         54                           59
  CLUS_2                         51                           47
  CLUS_3                         37                          150
  CLUS_4                         75                           95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       49     82     23
  AMP PEAK 19(12Q15) WILD-TYPE     97    107     53
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         49                           97
  CLUS_2                         82                          107
  CLUS_3                         23                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       49     19     26     60
  AMP PEAK 19(12Q15) WILD-TYPE     94     35     34     94
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         49                           94
  CLUS_2                         19                           35
  CLUS_3                         26                           34
  CLUS_4                         60                           94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       24     56     39
  AMP PEAK 19(12Q15) WILD-TYPE     55     53     73
D19V9, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         24                           55
  CLUS_2                         56                           53
  CLUS_3                         39                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       53     35     31
  AMP PEAK 19(12Q15) WILD-TYPE     93     24     64
D19V10, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         53                           93
  CLUS_2                         35                           24
  CLUS_3                         31                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       27     45     53     43
  AMP PEAK 19(12Q15) WILD-TYPE     44     90     88     57
D19V11, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         27                           44
  CLUS_2                         45                           90
  CLUS_3                         53                           88
  CLUS_4                         43                           57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       30     29     71     38
  AMP PEAK 19(12Q15) WILD-TYPE     75     42     94     68
D19V12, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         30                           75
  CLUS_2                         29                           42
  CLUS_3                         71                           94
  CLUS_4                         38                           68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED        2      1      2      5
  AMP PEAK 19(12Q15) WILD-TYPE      4      5      3      0
D19V13, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          2                            4
  CLUS_2                          1                            5
  CLUS_3                          2                            3
  CLUS_4                          5                            0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED        2      0      0      1      4      3
  AMP PEAK 19(12Q15) WILD-TYPE      3      2      2      3      1      1
D19V14, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          2                            3
  CLUS_2                          0                            2
  CLUS_3                          0                            2
  CLUS_4                          1                            3
  CLUS_5                          4                            1
  CLUS_6                          3                            1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED       59     21     31     32
  AMP PEAK 20(14Q11.2) WILD-TYPE    117     91     87    119
D20V1, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           59                            117
  CLUS_2                           21                             91
  CLUS_3                           31                             87
  CLUS_4                           32                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       80     33     30
  AMP PEAK 20(14Q11.2) WILD-TYPE    230    125     59
D20V2, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           80                            230
  CLUS_2                           33                            125
  CLUS_3                           30                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       49     28     65
  AMP PEAK 20(14Q11.2) WILD-TYPE    132    103    178
D20V3, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           49                            132
  CLUS_2                           28                            103
  CLUS_3                           65                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(14Q11.2) MUTATED       26      16     15     21     10      8
  AMP PEAK 20(14Q11.2) WILD-TYPE     59      41     43     61     24     67
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(14Q11.2) MUTATED       10     11     20      5
  AMP PEAK 20(14Q11.2) WILD-TYPE     24     25     32     37
D20V4, multiclass
         clus
vv        AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                            26                             59
  CLUS_10                           16                             41
  CLUS_2                            15                             43
  CLUS_3                            21                             61
  CLUS_4                            10                             24
  CLUS_5                             8                             67
  CLUS_6                            10                             24
  CLUS_7                            11                             25
  CLUS_8                            20                             32
  CLUS_9                             5                             37
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       73     22     52
  AMP PEAK 20(14Q11.2) WILD-TYPE    169    108    155
D20V5, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           73                            169
  CLUS_2                           22                            108
  CLUS_3                           52                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED       34     30     34     47
  AMP PEAK 20(14Q11.2) WILD-TYPE     79     68    153    123
D20V6, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           34                             79
  CLUS_2                           30                             68
  CLUS_3                           34                            153
  CLUS_4                           47                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       32     43     16
  AMP PEAK 20(14Q11.2) WILD-TYPE    114    146     60
D20V7, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           32                            114
  CLUS_2                           43                            146
  CLUS_3                           16                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED       26     12     11     42
  AMP PEAK 20(14Q11.2) WILD-TYPE    117     42     49    112
D20V8, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           26                            117
  CLUS_2                           12                             42
  CLUS_3                           11                             49
  CLUS_4                           42                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       19     34     24
  AMP PEAK 20(14Q11.2) WILD-TYPE     60     75     88
D20V9, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           19                             60
  CLUS_2                           34                             75
  CLUS_3                           24                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       40     18     19
  AMP PEAK 20(14Q11.2) WILD-TYPE    106     41     76
D20V10, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           40                            106
  CLUS_2                           18                             41
  CLUS_3                           19                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED       17     35     45     21
  AMP PEAK 20(14Q11.2) WILD-TYPE     54    100     96     79
D20V11, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           35                            100
  CLUS_3                           45                             96
  CLUS_4                           21                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED       26     20     41     31
  AMP PEAK 20(14Q11.2) WILD-TYPE     79     51    124     75
D20V12, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           26                             79
  CLUS_2                           20                             51
  CLUS_3                           41                            124
  CLUS_4                           31                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED        2      0      1      2
  AMP PEAK 20(14Q11.2) WILD-TYPE      4      6      4      3
D20V13, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              6
  CLUS_3                            1                              4
  CLUS_4                            2                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q11.2) MUTATED        2      0      0      0      1      2
  AMP PEAK 20(14Q11.2) WILD-TYPE      3      2      2      4      4      2
D20V14, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            0                              4
  CLUS_5                            1                              4
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED       46     31     27     46
  AMP PEAK 21(14Q32.33) WILD-TYPE    130     81     91    105
D21V1, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            46                             130
  CLUS_2                            31                              81
  CLUS_3                            27                              91
  CLUS_4                            46                             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       83     46     21
  AMP PEAK 21(14Q32.33) WILD-TYPE    227    112     68
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            83                             227
  CLUS_2                            46                             112
  CLUS_3                            21                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       51     34     65
  AMP PEAK 21(14Q32.33) WILD-TYPE    130     97    178
D21V3, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            51                             130
  CLUS_2                            34                              97
  CLUS_3                            65                             178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q32.33) MUTATED       25      12     12     26     11     11
  AMP PEAK 21(14Q32.33) WILD-TYPE     60      45     46     56     23     64
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 21(14Q32.33) MUTATED        5     15     17     16
  AMP PEAK 21(14Q32.33) WILD-TYPE     29     21     35     26
D21V4, multiclass
         clus
vv        AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                             25                              60
  CLUS_10                            12                              45
  CLUS_2                             12                              46
  CLUS_3                             26                              56
  CLUS_4                             11                              23
  CLUS_5                             11                              64
  CLUS_6                              5                              29
  CLUS_7                             15                              21
  CLUS_8                             17                              35
  CLUS_9                             16                              26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       45     32     79
  AMP PEAK 21(14Q32.33) WILD-TYPE    197     98    128
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            45                             197
  CLUS_2                            32                              98
  CLUS_3                            79                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED       38     26     46     42
  AMP PEAK 21(14Q32.33) WILD-TYPE     75     72    141    128
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            38                              75
  CLUS_2                            26                              72
  CLUS_3                            46                             141
  CLUS_4                            42                             128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       35     49     19
  AMP PEAK 21(14Q32.33) WILD-TYPE    111    140     57
D21V7, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            35                             111
  CLUS_2                            49                             140
  CLUS_3                            19                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED       38     14     12     39
  AMP PEAK 21(14Q32.33) WILD-TYPE    105     40     48    115
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            38                             105
  CLUS_2                            14                              40
  CLUS_3                            12                              48
  CLUS_4                            39                             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       29     25     30
  AMP PEAK 21(14Q32.33) WILD-TYPE     50     84     82
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            29                              50
  CLUS_2                            25                              84
  CLUS_3                            30                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       46     10     28
  AMP PEAK 21(14Q32.33) WILD-TYPE    100     49     67
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            46                             100
  CLUS_2                            10                              49
  CLUS_3                            28                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED       16     36     37     31
  AMP PEAK 21(14Q32.33) WILD-TYPE     55     99    104     69
D21V11, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            16                              55
  CLUS_2                            36                              99
  CLUS_3                            37                             104
  CLUS_4                            31                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED       34     16     45     25
  AMP PEAK 21(14Q32.33) WILD-TYPE     71     55    120     81
D21V12, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            34                              71
  CLUS_2                            16                              55
  CLUS_3                            45                             120
  CLUS_4                            25                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED        2      0      0      2
  AMP PEAK 21(14Q32.33) WILD-TYPE      4      6      5      3
D21V13, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             0                               6
  CLUS_3                             0                               5
  CLUS_4                             2                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q32.33) MUTATED        1      0      0      0      0      3
  AMP PEAK 21(14Q32.33) WILD-TYPE      4      2      2      4      5      1
D21V14, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             0                               2
  CLUS_3                             0                               2
  CLUS_4                             0                               4
  CLUS_5                             0                               5
  CLUS_6                             3                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       53     26     32     49
  AMP PEAK 22(15Q26.3) WILD-TYPE    123     86     86    102
D22V1, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           53                            123
  CLUS_2                           26                             86
  CLUS_3                           32                             86
  CLUS_4                           49                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       96     40     24
  AMP PEAK 22(15Q26.3) WILD-TYPE    214    118     65
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           96                            214
  CLUS_2                           40                            118
  CLUS_3                           24                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       57     36     66
  AMP PEAK 22(15Q26.3) WILD-TYPE    124     95    177
D22V3, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           57                            124
  CLUS_2                           36                             95
  CLUS_3                           66                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       29      15     10     27      7     18
  AMP PEAK 22(15Q26.3) WILD-TYPE     56      42     48     55     27     57
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(15Q26.3) MUTATED       11     12     16     14
  AMP PEAK 22(15Q26.3) WILD-TYPE     23     24     36     28
D22V4, multiclass
         clus
vv        AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            29                             56
  CLUS_10                           15                             42
  CLUS_2                            10                             48
  CLUS_3                            27                             55
  CLUS_4                             7                             27
  CLUS_5                            18                             57
  CLUS_6                            11                             23
  CLUS_7                            12                             24
  CLUS_8                            16                             36
  CLUS_9                            14                             28
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       50     25     88
  AMP PEAK 22(15Q26.3) WILD-TYPE    192    105    119
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           50                            192
  CLUS_2                           25                            105
  CLUS_3                           88                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       29     29     56     47
  AMP PEAK 22(15Q26.3) WILD-TYPE     84     69    131    123
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           29                             84
  CLUS_2                           29                             69
  CLUS_3                           56                            131
  CLUS_4                           47                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       43     54     21
  AMP PEAK 22(15Q26.3) WILD-TYPE    103    135     55
D22V7, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           43                            103
  CLUS_2                           54                            135
  CLUS_3                           21                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       40     14     15     49
  AMP PEAK 22(15Q26.3) WILD-TYPE    103     40     45    105
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           40                            103
  CLUS_2                           14                             40
  CLUS_3                           15                             45
  CLUS_4                           49                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       26     26     27
  AMP PEAK 22(15Q26.3) WILD-TYPE     53     83     85
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           26                             53
  CLUS_2                           26                             83
  CLUS_3                           27                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       40     15     24
  AMP PEAK 22(15Q26.3) WILD-TYPE    106     44     71
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           40                            106
  CLUS_2                           15                             44
  CLUS_3                           24                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       14     40     43     21
  AMP PEAK 22(15Q26.3) WILD-TYPE     57     95     98     79
D22V11, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                           40                             95
  CLUS_3                           43                             98
  CLUS_4                           21                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       33     16     34     35
  AMP PEAK 22(15Q26.3) WILD-TYPE     72     55    131     71
D22V12, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           16                             55
  CLUS_3                           34                            131
  CLUS_4                           35                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED        5      1      1      1
  AMP PEAK 22(15Q26.3) WILD-TYPE      1      5      4      4
D22V13, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            1                              5
  CLUS_3                            1                              4
  CLUS_4                            1                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED        3      0      0      1      3      1
  AMP PEAK 22(15Q26.3) WILD-TYPE      2      2      2      3      2      3
D22V14, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            1                              3
  CLUS_5                            3                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       60     45     44     59
  AMP PEAK 23(17Q25.3) WILD-TYPE    116     67     74     92
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           60                            116
  CLUS_2                           45                             67
  CLUS_3                           44                             74
  CLUS_4                           59                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED      103     70     35
  AMP PEAK 23(17Q25.3) WILD-TYPE    207     88     54
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                          103                            207
  CLUS_2                           70                             88
  CLUS_3                           35                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       66     49     93
  AMP PEAK 23(17Q25.3) WILD-TYPE    115     82    150
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           66                            115
  CLUS_2                           49                             82
  CLUS_3                           93                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q25.3) MUTATED       32      20     21     29     10     35
  AMP PEAK 23(17Q25.3) WILD-TYPE     53      37     37     53     24     40
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 23(17Q25.3) MUTATED        9     14     19     19
  AMP PEAK 23(17Q25.3) WILD-TYPE     25     22     33     23
D23V4, multiclass
         clus
vv        AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            32                             53
  CLUS_10                           20                             37
  CLUS_2                            21                             37
  CLUS_3                            29                             53
  CLUS_4                            10                             24
  CLUS_5                            35                             40
  CLUS_6                             9                             25
  CLUS_7                            14                             22
  CLUS_8                            19                             33
  CLUS_9                            19                             23
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       81     40     94
  AMP PEAK 23(17Q25.3) WILD-TYPE    161     90    113
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           81                            161
  CLUS_2                           40                             90
  CLUS_3                           94                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       47     33     65     67
  AMP PEAK 23(17Q25.3) WILD-TYPE     66     65    122    103
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           47                             66
  CLUS_2                           33                             65
  CLUS_3                           65                            122
  CLUS_4                           67                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       61     69     26
  AMP PEAK 23(17Q25.3) WILD-TYPE     85    120     50
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           61                             85
  CLUS_2                           69                            120
  CLUS_3                           26                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       62     24     27     43
  AMP PEAK 23(17Q25.3) WILD-TYPE     81     30     33    111
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           62                             81
  CLUS_2                           24                             30
  CLUS_3                           27                             33
  CLUS_4                           43                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       37     31     48
  AMP PEAK 23(17Q25.3) WILD-TYPE     42     78     64
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           37                             42
  CLUS_2                           31                             78
  CLUS_3                           48                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       59     18     39
  AMP PEAK 23(17Q25.3) WILD-TYPE     87     41     56
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           59                             87
  CLUS_2                           18                             41
  CLUS_3                           39                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       28     52     47     44
  AMP PEAK 23(17Q25.3) WILD-TYPE     43     83     94     56
D23V11, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           28                             43
  CLUS_2                           52                             83
  CLUS_3                           47                             94
  CLUS_4                           44                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       45     19     68     39
  AMP PEAK 23(17Q25.3) WILD-TYPE     60     52     97     67
D23V12, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           45                             60
  CLUS_2                           19                             52
  CLUS_3                           68                             97
  CLUS_4                           39                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED        2      3      4      2
  AMP PEAK 23(17Q25.3) WILD-TYPE      4      3      1      3
D23V13, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            3                              3
  CLUS_3                            4                              1
  CLUS_4                            2                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q25.3) MUTATED        2      0      2      3      2      2
  AMP PEAK 23(17Q25.3) WILD-TYPE      3      2      0      1      3      2
D23V14, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            0                              2
  CLUS_3                            2                              0
  CLUS_4                            3                              1
  CLUS_5                            2                              3
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       49     29     20     41
  AMP PEAK 24(18Q11.2) WILD-TYPE    127     83     98    110
D24V1, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           49                            127
  CLUS_2                           29                             83
  CLUS_3                           20                             98
  CLUS_4                           41                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       75     39     25
  AMP PEAK 24(18Q11.2) WILD-TYPE    235    119     64
D24V2, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           75                            235
  CLUS_2                           39                            119
  CLUS_3                           25                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       47     31     60
  AMP PEAK 24(18Q11.2) WILD-TYPE    134    100    183
D24V3, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           47                            134
  CLUS_2                           31                            100
  CLUS_3                           60                            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(18Q11.2) MUTATED       17      16     16     24     11     16
  AMP PEAK 24(18Q11.2) WILD-TYPE     68      41     42     58     23     59
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 24(18Q11.2) MUTATED       10     11     13      4
  AMP PEAK 24(18Q11.2) WILD-TYPE     24     25     39     38
D24V4, multiclass
         clus
vv        AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            17                             68
  CLUS_10                           16                             41
  CLUS_2                            16                             42
  CLUS_3                            24                             58
  CLUS_4                            11                             23
  CLUS_5                            16                             59
  CLUS_6                            10                             24
  CLUS_7                            11                             25
  CLUS_8                            13                             39
  CLUS_9                             4                             38
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       83     17     42
  AMP PEAK 24(18Q11.2) WILD-TYPE    159    113    165
D24V5, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           83                            159
  CLUS_2                           17                            113
  CLUS_3                           42                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       39     18     23     61
  AMP PEAK 24(18Q11.2) WILD-TYPE     74     80    164    109
D24V6, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           39                             74
  CLUS_2                           18                             80
  CLUS_3                           23                            164
  CLUS_4                           61                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       39     48     12
  AMP PEAK 24(18Q11.2) WILD-TYPE    107    141     64
D24V7, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           39                            107
  CLUS_2                           48                            141
  CLUS_3                           12                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       34     13     17     35
  AMP PEAK 24(18Q11.2) WILD-TYPE    109     41     43    119
D24V8, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           34                            109
  CLUS_2                           13                             41
  CLUS_3                           17                             43
  CLUS_4                           35                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       16     26     31
  AMP PEAK 24(18Q11.2) WILD-TYPE     63     83     81
D24V9, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           16                             63
  CLUS_2                           26                             83
  CLUS_3                           31                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       35     12     26
  AMP PEAK 24(18Q11.2) WILD-TYPE    111     47     69
D24V10, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           35                            111
  CLUS_2                           12                             47
  CLUS_3                           26                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       22     29     29     30
  AMP PEAK 24(18Q11.2) WILD-TYPE     49    106    112     70
D24V11, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           22                             49
  CLUS_2                           29                            106
  CLUS_3                           29                            112
  CLUS_4                           30                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       24     17     47     22
  AMP PEAK 24(18Q11.2) WILD-TYPE     81     54    118     84
D24V12, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           24                             81
  CLUS_2                           17                             54
  CLUS_3                           47                            118
  CLUS_4                           22                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED        1      0      2      4
  AMP PEAK 24(18Q11.2) WILD-TYPE      5      6      3      1
D24V13, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            0                              6
  CLUS_3                            2                              3
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18Q11.2) MUTATED        2      0      0      0      3      2
  AMP PEAK 24(18Q11.2) WILD-TYPE      3      2      2      4      2      2
D24V14, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            0                              4
  CLUS_5                            3                              2
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED      114     43     70     75
  AMP PEAK 25(19P13.12) WILD-TYPE     62     69     48     76
D25V1, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                           114                              62
  CLUS_2                            43                              69
  CLUS_3                            70                              48
  CLUS_4                            75                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED      186     64     52
  AMP PEAK 25(19P13.12) WILD-TYPE    124     94     37
D25V2, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                           186                             124
  CLUS_2                            64                              94
  CLUS_3                            52                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED      101     60    140
  AMP PEAK 25(19P13.12) WILD-TYPE     80     71    103
D25V3, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                           101                              80
  CLUS_2                            60                              71
  CLUS_3                           140                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       41      35     39     45     15     39
  AMP PEAK 25(19P13.12) WILD-TYPE     44      22     19     37     19     36
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 25(19P13.12) MUTATED       21     18     30     18
  AMP PEAK 25(19P13.12) WILD-TYPE     13     18     22     24
D25V4, multiclass
         clus
vv        AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             41                              44
  CLUS_10                            35                              22
  CLUS_2                             39                              19
  CLUS_3                             45                              37
  CLUS_4                             15                              19
  CLUS_5                             39                              36
  CLUS_6                             21                              13
  CLUS_7                             18                              18
  CLUS_8                             30                              22
  CLUS_9                             18                              24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED      170     49     96
  AMP PEAK 25(19P13.12) WILD-TYPE     72     81    111
D25V5, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                           170                              72
  CLUS_2                            49                              81
  CLUS_3                            96                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED       58     58     69    122
  AMP PEAK 25(19P13.12) WILD-TYPE     55     40    118     48
D25V6, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            58                              55
  CLUS_2                            58                              40
  CLUS_3                            69                             118
  CLUS_4                           122                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       70    126     30
  AMP PEAK 25(19P13.12) WILD-TYPE     76     63     46
D25V7, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            70                              76
  CLUS_2                           126                              63
  CLUS_3                            30                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED       64     26     43     93
  AMP PEAK 25(19P13.12) WILD-TYPE     79     28     17     61
D25V8, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            64                              79
  CLUS_2                            26                              28
  CLUS_3                            43                              17
  CLUS_4                            93                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       38     68     54
  AMP PEAK 25(19P13.12) WILD-TYPE     41     41     58
D25V9, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            38                              41
  CLUS_2                            68                              41
  CLUS_3                            54                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       78     37     45
  AMP PEAK 25(19P13.12) WILD-TYPE     68     22     50
D25V10, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            78                              68
  CLUS_2                            37                              22
  CLUS_3                            45                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED       35     76     75     61
  AMP PEAK 25(19P13.12) WILD-TYPE     36     59     66     39
D25V11, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            35                              36
  CLUS_2                            76                              59
  CLUS_3                            75                              66
  CLUS_4                            61                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED       49     36    101     61
  AMP PEAK 25(19P13.12) WILD-TYPE     56     35     64     45
D25V12, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            49                              56
  CLUS_2                            36                              35
  CLUS_3                           101                              64
  CLUS_4                            61                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED        3      4      2      3
  AMP PEAK 25(19P13.12) WILD-TYPE      3      2      3      2
D25V13, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             4                               2
  CLUS_3                             2                               3
  CLUS_4                             3                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED        2      1      1      3      2      3
  AMP PEAK 25(19P13.12) WILD-TYPE      3      1      1      1      3      1
D25V14, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             1                               1
  CLUS_3                             1                               1
  CLUS_4                             3                               1
  CLUS_5                             2                               3
  CLUS_6                             3                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED      111     53     58     92
  AMP PEAK 26(19Q12) WILD-TYPE     65     59     60     59
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        111                           65
  CLUS_2                         53                           59
  CLUS_3                         58                           60
  CLUS_4                         92                           59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      187     73     54
  AMP PEAK 26(19Q12) WILD-TYPE    123     85     35
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        187                          123
  CLUS_2                         73                           85
  CLUS_3                         54                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      106     58    148
  AMP PEAK 26(19Q12) WILD-TYPE     75     73     95
D26V3, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        106                           75
  CLUS_2                         58                           73
  CLUS_3                        148                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       44      31     37     46     19     41
  AMP PEAK 26(19Q12) WILD-TYPE     41      26     21     36     15     34
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 26(19Q12) MUTATED       23     20     33     18
  AMP PEAK 26(19Q12) WILD-TYPE     11     16     19     24
D26V4, multiclass
         clus
vv        AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          44                           41
  CLUS_10                         31                           26
  CLUS_2                          37                           21
  CLUS_3                          46                           36
  CLUS_4                          19                           15
  CLUS_5                          41                           34
  CLUS_6                          23                           11
  CLUS_7                          20                           16
  CLUS_8                          33                           19
  CLUS_9                          18                           24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      195     40     88
  AMP PEAK 26(19Q12) WILD-TYPE     47     90    119
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        195                           47
  CLUS_2                         40                           90
  CLUS_3                         88                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       71     50     69    130
  AMP PEAK 26(19Q12) WILD-TYPE     42     48    118     40
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         71                           42
  CLUS_2                         50                           48
  CLUS_3                         69                          118
  CLUS_4                        130                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       72    117     35
  AMP PEAK 26(19Q12) WILD-TYPE     74     72     41
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         72                           74
  CLUS_2                        117                           72
  CLUS_3                         35                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       78     26     34     86
  AMP PEAK 26(19Q12) WILD-TYPE     65     28     26     68
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         78                           65
  CLUS_2                         26                           28
  CLUS_3                         34                           26
  CLUS_4                         86                           68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       40     61     63
  AMP PEAK 26(19Q12) WILD-TYPE     39     48     49
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         40                           39
  CLUS_2                         61                           48
  CLUS_3                         63                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       81     37     46
  AMP PEAK 26(19Q12) WILD-TYPE     65     22     49
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         81                           65
  CLUS_2                         37                           22
  CLUS_3                         46                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       36     81     76     63
  AMP PEAK 26(19Q12) WILD-TYPE     35     54     65     37
D26V11, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         36                           35
  CLUS_2                         81                           54
  CLUS_3                         76                           65
  CLUS_4                         63                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       50     39    106     61
  AMP PEAK 26(19Q12) WILD-TYPE     55     32     59     45
D26V12, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         50                           55
  CLUS_2                         39                           32
  CLUS_3                        106                           59
  CLUS_4                         61                           45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED        3      4      2      3
  AMP PEAK 26(19Q12) WILD-TYPE      3      2      3      2
D26V13, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          3                            3
  CLUS_2                          4                            2
  CLUS_3                          2                            3
  CLUS_4                          3                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q12) MUTATED        4      2      1      2      2      1
  AMP PEAK 26(19Q12) WILD-TYPE      1      0      1      2      3      3
D26V14, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          4                            1
  CLUS_2                          2                            0
  CLUS_3                          1                            1
  CLUS_4                          2                            2
  CLUS_5                          2                            3
  CLUS_6                          1                            3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED       82     48     37     70
  AMP PEAK 27(19Q13.2) WILD-TYPE     94     64     81     81
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           82                             94
  CLUS_2                           48                             64
  CLUS_3                           37                             81
  CLUS_4                           70                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED      132     63     42
  AMP PEAK 27(19Q13.2) WILD-TYPE    178     95     47
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                          132                            178
  CLUS_2                           63                             95
  CLUS_3                           42                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       78     56    101
  AMP PEAK 27(19Q13.2) WILD-TYPE    103     75    142
D27V3, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           78                            103
  CLUS_2                           56                             75
  CLUS_3                          101                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.2) MUTATED       37      22     21     30     15     33
  AMP PEAK 27(19Q13.2) WILD-TYPE     48      35     37     52     19     42
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 27(19Q13.2) MUTATED       16     14     31     16
  AMP PEAK 27(19Q13.2) WILD-TYPE     18     22     21     26
D27V4, multiclass
         clus
vv        AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                            37                             48
  CLUS_10                           22                             35
  CLUS_2                            21                             37
  CLUS_3                            30                             52
  CLUS_4                            15                             19
  CLUS_5                            33                             42
  CLUS_6                            16                             18
  CLUS_7                            14                             22
  CLUS_8                            31                             21
  CLUS_9                            16                             26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED      148     29     68
  AMP PEAK 27(19Q13.2) WILD-TYPE     94    101    139
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                          148                             94
  CLUS_2                           29                            101
  CLUS_3                           68                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED       61     38     51     91
  AMP PEAK 27(19Q13.2) WILD-TYPE     52     60    136     79
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           61                             52
  CLUS_2                           38                             60
  CLUS_3                           51                            136
  CLUS_4                           91                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       60     90     24
  AMP PEAK 27(19Q13.2) WILD-TYPE     86     99     52
D27V7, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           60                             86
  CLUS_2                           90                             99
  CLUS_3                           24                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED       54     22     29     69
  AMP PEAK 27(19Q13.2) WILD-TYPE     89     32     31     85
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           54                             89
  CLUS_2                           22                             32
  CLUS_3                           29                             31
  CLUS_4                           69                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       29     47     50
  AMP PEAK 27(19Q13.2) WILD-TYPE     50     62     62
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           29                             50
  CLUS_2                           47                             62
  CLUS_3                           50                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       55     34     37
  AMP PEAK 27(19Q13.2) WILD-TYPE     91     25     58
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           55                             91
  CLUS_2                           34                             25
  CLUS_3                           37                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED       32     60     64     37
  AMP PEAK 27(19Q13.2) WILD-TYPE     39     75     77     63
D27V11, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           32                             39
  CLUS_2                           60                             75
  CLUS_3                           64                             77
  CLUS_4                           37                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED       42     36     70     45
  AMP PEAK 27(19Q13.2) WILD-TYPE     63     35     95     61
D27V12, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           42                             63
  CLUS_2                           36                             35
  CLUS_3                           70                             95
  CLUS_4                           45                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED        2      1      3      2
  AMP PEAK 27(19Q13.2) WILD-TYPE      4      5      2      3
D27V13, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                              5
  CLUS_3                            3                              2
  CLUS_4                            2                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.2) MUTATED        3      0      1      1      2      1
  AMP PEAK 27(19Q13.2) WILD-TYPE      2      2      1      3      3      3
D27V14, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            1                              3
  CLUS_5                            2                              3
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED      118     56     49     78
  AMP PEAK 28(20P13) WILD-TYPE     58     56     69     73
D28V1, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                        118                           58
  CLUS_2                         56                           56
  CLUS_3                         49                           69
  CLUS_4                         78                           73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED      160     79     62
  AMP PEAK 28(20P13) WILD-TYPE    150     79     27
D28V2, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                        160                          150
  CLUS_2                         79                           79
  CLUS_3                         62                           27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       97     59    144
  AMP PEAK 28(20P13) WILD-TYPE     84     72     99
D28V3, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         97                           84
  CLUS_2                         59                           72
  CLUS_3                        144                           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20P13) MUTATED       41      28     36     44     19     44
  AMP PEAK 28(20P13) WILD-TYPE     44      29     22     38     15     31
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 28(20P13) MUTATED       23     18     34     13
  AMP PEAK 28(20P13) WILD-TYPE     11     18     18     29
D28V4, multiclass
         clus
vv        AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                          41                           44
  CLUS_10                         28                           29
  CLUS_2                          36                           22
  CLUS_3                          44                           38
  CLUS_4                          19                           15
  CLUS_5                          44                           31
  CLUS_6                          23                           11
  CLUS_7                          18                           18
  CLUS_8                          34                           18
  CLUS_9                          13                           29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED      181     39     96
  AMP PEAK 28(20P13) WILD-TYPE     61     91    111
D28V5, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                        181                           61
  CLUS_2                         39                           91
  CLUS_3                         96                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED       64     63     67    112
  AMP PEAK 28(20P13) WILD-TYPE     49     35    120     58
D28V6, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         64                           49
  CLUS_2                         63                           35
  CLUS_3                         67                          120
  CLUS_4                        112                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       79    111     41
  AMP PEAK 28(20P13) WILD-TYPE     67     78     35
D28V7, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         79                           67
  CLUS_2                        111                           78
  CLUS_3                         41                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED       83     30     39     79
  AMP PEAK 28(20P13) WILD-TYPE     60     24     21     75
D28V8, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         83                           60
  CLUS_2                         30                           24
  CLUS_3                         39                           21
  CLUS_4                         79                           75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       36     71     59
  AMP PEAK 28(20P13) WILD-TYPE     43     38     53
D28V9, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         36                           43
  CLUS_2                         71                           38
  CLUS_3                         59                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       74     41     51
  AMP PEAK 28(20P13) WILD-TYPE     72     18     44
D28V10, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         74                           72
  CLUS_2                         41                           18
  CLUS_3                         51                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED       40     73     72     59
  AMP PEAK 28(20P13) WILD-TYPE     31     62     69     41
D28V11, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         40                           31
  CLUS_2                         73                           62
  CLUS_3                         72                           69
  CLUS_4                         59                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED       44     44    106     50
  AMP PEAK 28(20P13) WILD-TYPE     61     27     59     56
D28V12, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         44                           61
  CLUS_2                         44                           27
  CLUS_3                        106                           59
  CLUS_4                         50                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED        3      3      2      2
  AMP PEAK 28(20P13) WILD-TYPE      3      3      3      3
D28V13, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                          3                            3
  CLUS_2                          3                            3
  CLUS_3                          2                            3
  CLUS_4                          2                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20P13) MUTATED        3      1      0      2      3      1
  AMP PEAK 28(20P13) WILD-TYPE      2      1      2      2      2      3
D28V14, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          1                            1
  CLUS_3                          0                            2
  CLUS_4                          2                            2
  CLUS_5                          3                            2
  CLUS_6                          1                            3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED      132     70     46     83
  AMP PEAK 29(20Q11.21) WILD-TYPE     44     42     72     68
D29V1, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                           132                              44
  CLUS_2                            70                              42
  CLUS_3                            46                              72
  CLUS_4                            83                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED      177     87     67
  AMP PEAK 29(20Q11.21) WILD-TYPE    133     71     22
D29V2, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                           177                             133
  CLUS_2                            87                              71
  CLUS_3                            67                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED      110     66    155
  AMP PEAK 29(20Q11.21) WILD-TYPE     71     65     88
D29V3, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                           110                              71
  CLUS_2                            66                              65
  CLUS_3                           155                              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q11.21) MUTATED       45      33     36     44     20     45
  AMP PEAK 29(20Q11.21) WILD-TYPE     40      24     22     38     14     30
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 29(20Q11.21) MUTATED       29     21     40     18
  AMP PEAK 29(20Q11.21) WILD-TYPE      5     15     12     24
D29V4, multiclass
         clus
vv        AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                             45                              40
  CLUS_10                            33                              24
  CLUS_2                             36                              22
  CLUS_3                             44                              38
  CLUS_4                             20                              14
  CLUS_5                             45                              30
  CLUS_6                             29                               5
  CLUS_7                             21                              15
  CLUS_8                             40                              12
  CLUS_9                             18                              24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED      206     47     94
  AMP PEAK 29(20Q11.21) WILD-TYPE     36     83    113
D29V5, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                           206                              36
  CLUS_2                            47                              83
  CLUS_3                            94                             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED       80     65     59    135
  AMP PEAK 29(20Q11.21) WILD-TYPE     33     33    128     35
D29V6, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            80                              33
  CLUS_2                            65                              33
  CLUS_3                            59                             128
  CLUS_4                           135                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       79    123     43
  AMP PEAK 29(20Q11.21) WILD-TYPE     67     66     33
D29V7, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            79                              67
  CLUS_2                           123                              66
  CLUS_3                            43                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED       87     27     42     89
  AMP PEAK 29(20Q11.21) WILD-TYPE     56     27     18     65
D29V8, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            87                              56
  CLUS_2                            27                              27
  CLUS_3                            42                              18
  CLUS_4                            89                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       37     77     69
  AMP PEAK 29(20Q11.21) WILD-TYPE     42     32     43
D29V9, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            37                              42
  CLUS_2                            77                              32
  CLUS_3                            69                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       80     47     56
  AMP PEAK 29(20Q11.21) WILD-TYPE     66     12     39
D29V10, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            80                              66
  CLUS_2                            47                              12
  CLUS_3                            56                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED       47     84     83     60
  AMP PEAK 29(20Q11.21) WILD-TYPE     24     51     58     40
D29V11, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            47                              24
  CLUS_2                            84                              51
  CLUS_3                            83                              58
  CLUS_4                            60                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED       52     46    119     57
  AMP PEAK 29(20Q11.21) WILD-TYPE     53     25     46     49
D29V12, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            52                              53
  CLUS_2                            46                              25
  CLUS_3                           119                              46
  CLUS_4                            57                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED        3      3      2      3
  AMP PEAK 29(20Q11.21) WILD-TYPE      3      3      3      2
D29V13, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             3                               3
  CLUS_3                             2                               3
  CLUS_4                             3                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q11.21) MUTATED        4      1      0      2      2      2
  AMP PEAK 29(20Q11.21) WILD-TYPE      1      1      2      2      3      2
D29V14, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                             4                               1
  CLUS_2                             1                               1
  CLUS_3                             0                               2
  CLUS_4                             2                               2
  CLUS_5                             2                               3
  CLUS_6                             2                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED      144     78     68     95
  AMP PEAK 30(20Q13.33) WILD-TYPE     32     34     50     56
D30V1, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           144                              32
  CLUS_2                            78                              34
  CLUS_3                            68                              50
  CLUS_4                            95                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      206    103     76
  AMP PEAK 30(20Q13.33) WILD-TYPE    104     55     13
D30V2, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           206                             104
  CLUS_2                           103                              55
  CLUS_3                            76                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      121     91    172
  AMP PEAK 30(20Q13.33) WILD-TYPE     60     40     71
D30V3, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           121                              60
  CLUS_2                            91                              40
  CLUS_3                           172                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(20Q13.33) MUTATED       49      35     41     52     29     54
  AMP PEAK 30(20Q13.33) WILD-TYPE     36      22     17     30      5     21
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 30(20Q13.33) MUTATED       29     25     45     25
  AMP PEAK 30(20Q13.33) WILD-TYPE      5     11      7     17
D30V4, multiclass
         clus
vv        AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                             49                              36
  CLUS_10                            35                              22
  CLUS_2                             41                              17
  CLUS_3                             52                              30
  CLUS_4                             29                               5
  CLUS_5                             54                              21
  CLUS_6                             29                               5
  CLUS_7                             25                              11
  CLUS_8                             45                               7
  CLUS_9                             25                              17
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      213     54    134
  AMP PEAK 30(20Q13.33) WILD-TYPE     29     76     73
D30V5, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           213                              29
  CLUS_2                            54                              76
  CLUS_3                           134                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED       88     79     91    134
  AMP PEAK 30(20Q13.33) WILD-TYPE     25     19     96     36
D30V6, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            88                              25
  CLUS_2                            79                              19
  CLUS_3                            91                              96
  CLUS_4                           134                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      105    134     48
  AMP PEAK 30(20Q13.33) WILD-TYPE     41     55     28
D30V7, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           105                              41
  CLUS_2                           134                              55
  CLUS_3                            48                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED      100     39     43    105
  AMP PEAK 30(20Q13.33) WILD-TYPE     43     15     17     49
D30V8, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           100                              43
  CLUS_2                            39                              15
  CLUS_3                            43                              17
  CLUS_4                           105                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED       49     86     78
  AMP PEAK 30(20Q13.33) WILD-TYPE     30     23     34
D30V9, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            49                              30
  CLUS_2                            86                              23
  CLUS_3                            78                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED       95     52     66
  AMP PEAK 30(20Q13.33) WILD-TYPE     51      7     29
D30V10, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            95                              51
  CLUS_2                            52                               7
  CLUS_3                            66                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED       50     93     96     79
  AMP PEAK 30(20Q13.33) WILD-TYPE     21     42     45     21
D30V11, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            50                              21
  CLUS_2                            93                              42
  CLUS_3                            96                              45
  CLUS_4                            79                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED       69     53    128     68
  AMP PEAK 30(20Q13.33) WILD-TYPE     36     18     37     38
D30V12, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            69                              36
  CLUS_2                            53                              18
  CLUS_3                           128                              37
  CLUS_4                            68                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED        5      4      3      5
  AMP PEAK 30(20Q13.33) WILD-TYPE      1      2      2      0
D30V13, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                             5                               1
  CLUS_2                             4                               2
  CLUS_3                             3                               2
  CLUS_4                             5                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(20Q13.33) MUTATED        4      2      0      2      5      4
  AMP PEAK 30(20Q13.33) WILD-TYPE      1      0      2      2      0      0
D30V14, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                             4                               1
  CLUS_2                             2                               0
  CLUS_3                             0                               2
  CLUS_4                             2                               2
  CLUS_5                             5                               0
  CLUS_6                             4                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED       28     15     14     32
  AMP PEAK 31(22Q12.2) WILD-TYPE    148     97    104    119
D31V1, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           28                            148
  CLUS_2                           15                             97
  CLUS_3                           14                            104
  CLUS_4                           32                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       57     23      9
  AMP PEAK 31(22Q12.2) WILD-TYPE    253    135     80
D31V2, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           57                            253
  CLUS_2                           23                            135
  CLUS_3                            9                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       33     13     41
  AMP PEAK 31(22Q12.2) WILD-TYPE    148    118    202
D31V3, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           33                            148
  CLUS_2                           13                            118
  CLUS_3                           41                            202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(22Q12.2) MUTATED       11       7     15     16      4     16
  AMP PEAK 31(22Q12.2) WILD-TYPE     74      50     43     66     30     59
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 31(22Q12.2) MUTATED        5      8      3      2
  AMP PEAK 31(22Q12.2) WILD-TYPE     29     28     49     40
D31V4, multiclass
         clus
vv        AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                            11                             74
  CLUS_10                            7                             50
  CLUS_2                            15                             43
  CLUS_3                            16                             66
  CLUS_4                             4                             30
  CLUS_5                            16                             59
  CLUS_6                             5                             29
  CLUS_7                             8                             28
  CLUS_8                             3                             49
  CLUS_9                             2                             40
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       45      9     37
  AMP PEAK 31(22Q12.2) WILD-TYPE    197    121    170
D31V5, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           45                            197
  CLUS_2                            9                            121
  CLUS_3                           37                            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED       23      8     25     33
  AMP PEAK 31(22Q12.2) WILD-TYPE     90     90    162    137
D31V6, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           23                             90
  CLUS_2                            8                             90
  CLUS_3                           25                            162
  CLUS_4                           33                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       22     32     15
  AMP PEAK 31(22Q12.2) WILD-TYPE    124    157     61
D31V7, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           22                            124
  CLUS_2                           32                            157
  CLUS_3                           15                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED       22     18     13     16
  AMP PEAK 31(22Q12.2) WILD-TYPE    121     36     47    138
D31V8, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           22                            121
  CLUS_2                           18                             36
  CLUS_3                           13                             47
  CLUS_4                           16                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       11     12     23
  AMP PEAK 31(22Q12.2) WILD-TYPE     68     97     89
D31V9, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                           12                             97
  CLUS_3                           23                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       23      4     19
  AMP PEAK 31(22Q12.2) WILD-TYPE    123     55     76
D31V10, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           23                            123
  CLUS_2                            4                             55
  CLUS_3                           19                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED       11     24     15     21
  AMP PEAK 31(22Q12.2) WILD-TYPE     60    111    126     79
D31V11, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           11                             60
  CLUS_2                           24                            111
  CLUS_3                           15                            126
  CLUS_4                           21                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED       15      8     38     10
  AMP PEAK 31(22Q12.2) WILD-TYPE     90     63    127     96
D31V12, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           15                             90
  CLUS_2                            8                             63
  CLUS_3                           38                            127
  CLUS_4                           10                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED        1      1      1      1
  AMP PEAK 31(22Q12.2) WILD-TYPE      5      5      4      4
D31V13, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            1                              5
  CLUS_3                            1                              4
  CLUS_4                            1                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(22Q12.2) MUTATED        0      0      0      1      3      0
  AMP PEAK 31(22Q12.2) WILD-TYPE      5      2      2      3      2      4
D31V14, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            1                              3
  CLUS_5                            3                              2
  CLUS_6                            0                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(XP11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED       51     31     26     45
  AMP PEAK 32(XP11.23) WILD-TYPE    125     81     92    106
D32V1, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           51                            125
  CLUS_2                           31                             81
  CLUS_3                           26                             92
  CLUS_4                           45                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       88     41     24
  AMP PEAK 32(XP11.23) WILD-TYPE    222    117     65
D32V2, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           88                            222
  CLUS_2                           41                            117
  CLUS_3                           24                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       53     29     70
  AMP PEAK 32(XP11.23) WILD-TYPE    128    102    173
D32V3, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           53                            128
  CLUS_2                           29                            102
  CLUS_3                           70                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(XP11.23) MUTATED       21      11     18     28      9     24
  AMP PEAK 32(XP11.23) WILD-TYPE     64      46     40     54     25     51
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 32(XP11.23) MUTATED        7      9     16      9
  AMP PEAK 32(XP11.23) WILD-TYPE     27     27     36     33
D32V4, multiclass
         clus
vv        AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                            21                             64
  CLUS_10                           11                             46
  CLUS_2                            18                             40
  CLUS_3                            28                             54
  CLUS_4                             9                             25
  CLUS_5                            24                             51
  CLUS_6                             7                             27
  CLUS_7                             9                             27
  CLUS_8                            16                             36
  CLUS_9                             9                             33
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       92     14     53
  AMP PEAK 32(XP11.23) WILD-TYPE    150    116    154
D32V5, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           92                            150
  CLUS_2                           14                            116
  CLUS_3                           53                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED       34     24     38     58
  AMP PEAK 32(XP11.23) WILD-TYPE     79     74    149    112
D32V6, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           34                             79
  CLUS_2                           24                             74
  CLUS_3                           38                            149
  CLUS_4                           58                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       37     54     17
  AMP PEAK 32(XP11.23) WILD-TYPE    109    135     59
D32V7, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           37                            109
  CLUS_2                           54                            135
  CLUS_3                           17                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED       35     19     16     38
  AMP PEAK 32(XP11.23) WILD-TYPE    108     35     44    116
D32V8, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           35                            108
  CLUS_2                           19                             35
  CLUS_3                           16                             44
  CLUS_4                           38                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       19     35     32
  AMP PEAK 32(XP11.23) WILD-TYPE     60     74     80
D32V9, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           19                             60
  CLUS_2                           35                             74
  CLUS_3                           32                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       44     18     24
  AMP PEAK 32(XP11.23) WILD-TYPE    102     41     71
D32V10, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           44                            102
  CLUS_2                           18                             41
  CLUS_3                           24                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED       22     39     38     27
  AMP PEAK 32(XP11.23) WILD-TYPE     49     96    103     73
D32V11, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           22                             49
  CLUS_2                           39                             96
  CLUS_3                           38                            103
  CLUS_4                           27                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED       23     27     53     23
  AMP PEAK 32(XP11.23) WILD-TYPE     82     44    112     83
D32V12, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           23                             82
  CLUS_2                           27                             44
  CLUS_3                           53                            112
  CLUS_4                           23                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED        4      2      1      1
  AMP PEAK 32(XP11.23) WILD-TYPE      2      4      4      4
D32V13, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            2                              4
  CLUS_3                            1                              4
  CLUS_4                            1                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(XP11.23) MUTATED        2      0      0      2      2      2
  AMP PEAK 32(XP11.23) WILD-TYPE      3      2      2      2      3      2
D32V14, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            2                              2
  CLUS_5                            2                              3
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED       64     36     42     71
  AMP PEAK 33(XQ28) WILD-TYPE    112     76     76     80
D33V1, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        64                         112
  CLUS_2                        36                          76
  CLUS_3                        42                          76
  CLUS_4                        71                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED      119     58     36
  AMP PEAK 33(XQ28) WILD-TYPE    191    100     53
D33V2, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                       119                         191
  CLUS_2                        58                         100
  CLUS_3                        36                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       62     54     96
  AMP PEAK 33(XQ28) WILD-TYPE    119     77    147
D33V3, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        62                         119
  CLUS_2                        54                          77
  CLUS_3                        96                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(XQ28) MUTATED       32      15     25     28     12     38     10
  AMP PEAK 33(XQ28) WILD-TYPE     53      42     33     54     22     37     24
                             vv
clus                          CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 33(XQ28) MUTATED       10     23     19
  AMP PEAK 33(XQ28) WILD-TYPE     26     29     23
D33V4, multiclass
         clus
vv        AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         32                          53
  CLUS_10                        15                          42
  CLUS_2                         25                          33
  CLUS_3                         28                          54
  CLUS_4                         12                          22
  CLUS_5                         38                          37
  CLUS_6                         10                          24
  CLUS_7                         10                          26
  CLUS_8                         23                          29
  CLUS_9                         19                          23
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       91     34     95
  AMP PEAK 33(XQ28) WILD-TYPE    151     96    112
D33V5, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        91                         151
  CLUS_2                        34                          96
  CLUS_3                        95                         112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED       41     36     74     66
  AMP PEAK 33(XQ28) WILD-TYPE     72     62    113    104
D33V6, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        41                          72
  CLUS_2                        36                          62
  CLUS_3                        74                         113
  CLUS_4                        66                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       59     75     25
  AMP PEAK 33(XQ28) WILD-TYPE     87    114     51
D33V7, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        59                          87
  CLUS_2                        75                         114
  CLUS_3                        25                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED       54     20     29     56
  AMP PEAK 33(XQ28) WILD-TYPE     89     34     31     98
D33V8, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        54                          89
  CLUS_2                        20                          34
  CLUS_3                        29                          31
  CLUS_4                        56                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       29     39     46
  AMP PEAK 33(XQ28) WILD-TYPE     50     70     66
D33V9, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        29                          50
  CLUS_2                        39                          70
  CLUS_3                        46                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       54     19     41
  AMP PEAK 33(XQ28) WILD-TYPE     92     40     54
D33V10, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        54                          92
  CLUS_2                        19                          40
  CLUS_3                        41                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED       25     53     52     40
  AMP PEAK 33(XQ28) WILD-TYPE     46     82     89     60
D33V11, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        25                          46
  CLUS_2                        53                          82
  CLUS_3                        52                          89
  CLUS_4                        40                          60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED       40     30     63     37
  AMP PEAK 33(XQ28) WILD-TYPE     65     41    102     69
D33V12, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        40                          65
  CLUS_2                        30                          41
  CLUS_3                        63                         102
  CLUS_4                        37                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED        3      0      2      5
  AMP PEAK 33(XQ28) WILD-TYPE      3      6      3      0
D33V13, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         3                           3
  CLUS_2                         0                           6
  CLUS_3                         2                           3
  CLUS_4                         5                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(XQ28) MUTATED        3      0      1      0      3      3
  AMP PEAK 33(XQ28) WILD-TYPE      2      2      1      4      2      1
D33V14, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         0                           2
  CLUS_3                         1                           1
  CLUS_4                         0                           4
  CLUS_5                         3                           2
  CLUS_6                         3                           1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       83     59     54     70
  DEL PEAK  1(1P36.11) WILD-TYPE     93     53     64     81
D34V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           83                             93
  CLUS_2                           59                             53
  CLUS_3                           54                             64
  CLUS_4                           70                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED      138     76     52
  DEL PEAK  1(1P36.11) WILD-TYPE    172     82     37
D34V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                          138                            172
  CLUS_2                           76                             82
  CLUS_3                           52                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       80     74    111
  DEL PEAK  1(1P36.11) WILD-TYPE    101     57    132
D34V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           80                            101
  CLUS_2                           74                             57
  CLUS_3                          111                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       46      20     31     34     13     33
  DEL PEAK  1(1P36.11) WILD-TYPE     39      37     27     48     21     42
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED       14     21     31     22
  DEL PEAK  1(1P36.11) WILD-TYPE     20     15     21     20
D34V4, multiclass
         clus
vv        DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            46                             39
  CLUS_10                           20                             37
  CLUS_2                            31                             27
  CLUS_3                            34                             48
  CLUS_4                            13                             21
  CLUS_5                            33                             42
  CLUS_6                            14                             20
  CLUS_7                            21                             15
  CLUS_8                            31                             21
  CLUS_9                            22                             20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       95     71    103
  DEL PEAK  1(1P36.11) WILD-TYPE    147     59    104
D34V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           95                            147
  CLUS_2                           71                             59
  CLUS_3                          103                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       57     51     96     62
  DEL PEAK  1(1P36.11) WILD-TYPE     56     47     91    108
D34V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           57                             56
  CLUS_2                           51                             47
  CLUS_3                           96                             91
  CLUS_4                           62                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       76     75     39
  DEL PEAK  1(1P36.11) WILD-TYPE     70    114     37
D34V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                           75                            114
  CLUS_3                           39                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       75     26     27     62
  DEL PEAK  1(1P36.11) WILD-TYPE     68     28     33     92
D34V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           75                             68
  CLUS_2                           26                             28
  CLUS_3                           27                             33
  CLUS_4                           62                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       32     41     56
  DEL PEAK  1(1P36.11) WILD-TYPE     47     68     56
D34V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           41                             68
  CLUS_3                           56                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       57     24     48
  DEL PEAK  1(1P36.11) WILD-TYPE     89     35     47
D34V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           57                             89
  CLUS_2                           24                             35
  CLUS_3                           48                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       30     59     72     40
  DEL PEAK  1(1P36.11) WILD-TYPE     41     76     69     60
D34V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           30                             41
  CLUS_2                           59                             76
  CLUS_3                           72                             69
  CLUS_4                           40                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       50     38     64     49
  DEL PEAK  1(1P36.11) WILD-TYPE     55     33    101     57
D34V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           50                             55
  CLUS_2                           38                             33
  CLUS_3                           64                            101
  CLUS_4                           49                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        2      2      2      2
  DEL PEAK  1(1P36.11) WILD-TYPE      4      4      3      3
D34V13, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                              4
  CLUS_3                            2                              3
  CLUS_4                            2                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        1      0      1      2      3      1
  DEL PEAK  1(1P36.11) WILD-TYPE      4      2      1      2      2      3
D34V14, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            2                              2
  CLUS_5                            3                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  2(1Q41) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED       26     19     21     25
  DEL PEAK  2(1Q41) WILD-TYPE    150     93     97    126
D35V1, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        26                         150
  CLUS_2                        19                          93
  CLUS_3                        21                          97
  CLUS_4                        25                         126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       50     29     12
  DEL PEAK  2(1Q41) WILD-TYPE    260    129     77
D35V2, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        50                         260
  CLUS_2                        29                         129
  CLUS_3                        12                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       32     18     41
  DEL PEAK  2(1Q41) WILD-TYPE    149    113    202
D35V3, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        32                         149
  CLUS_2                        18                         113
  CLUS_3                        41                         202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q41) MUTATED       12      11      9     17      8     10      4
  DEL PEAK  2(1Q41) WILD-TYPE     73      46     49     65     26     65     30
                             vv
clus                          CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  2(1Q41) MUTATED        4      8      8
  DEL PEAK  2(1Q41) WILD-TYPE     32     44     34
D35V4, multiclass
         clus
vv        DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                         12                          73
  CLUS_10                        11                          46
  CLUS_2                          9                          49
  CLUS_3                         17                          65
  CLUS_4                          8                          26
  CLUS_5                         10                          65
  CLUS_6                          4                          30
  CLUS_7                          4                          32
  CLUS_8                          8                          44
  CLUS_9                          8                          34
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       33      5     59
  DEL PEAK  2(1Q41) WILD-TYPE    209    125    148
D35V5, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        33                         209
  CLUS_2                         5                         125
  CLUS_3                        59                         148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED       22     11     39     23
  DEL PEAK  2(1Q41) WILD-TYPE     91     87    148    147
D35V6, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        22                          91
  CLUS_2                        11                          87
  CLUS_3                        39                         148
  CLUS_4                        23                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       21     25     15
  DEL PEAK  2(1Q41) WILD-TYPE    125    164     61
D35V7, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        21                         125
  CLUS_2                        25                         164
  CLUS_3                        15                          61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED       18     10      7     26
  DEL PEAK  2(1Q41) WILD-TYPE    125     44     53    128
D35V8, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        18                         125
  CLUS_2                        10                          44
  CLUS_3                         7                          53
  CLUS_4                        26                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       14     14     15
  DEL PEAK  2(1Q41) WILD-TYPE     65     95     97
D35V9, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        14                          65
  CLUS_2                        14                          95
  CLUS_3                        15                          97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       20      9     14
  DEL PEAK  2(1Q41) WILD-TYPE    126     50     81
D35V10, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        20                         126
  CLUS_2                         9                          50
  CLUS_3                        14                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED       12     19     21     20
  DEL PEAK  2(1Q41) WILD-TYPE     59    116    120     80
D35V11, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        12                          59
  CLUS_2                        19                         116
  CLUS_3                        21                         120
  CLUS_4                        20                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED       16     12     28     16
  DEL PEAK  2(1Q41) WILD-TYPE     89     59    137     90
D35V12, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        16                          89
  CLUS_2                        12                          59
  CLUS_3                        28                         137
  CLUS_4                        16                          90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED        0      1      0      0
  DEL PEAK  2(1Q41) WILD-TYPE      6      5      5      5
D35V13, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  2(1Q41) MUTATED"
clus
  DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE 
                          1                          21 
                 TCGA-04-1652                  TCGA-09-2054 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-13-0908                  TCGA-23-2077 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-1928                  TCGA-24-2036 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-1918                  TCGA-61-2088 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-2098                  TCGA-61-2109 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-2111 
"DEL PEAK  2(1Q41) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q41) MUTATED        0      1      0      0      0      0
  DEL PEAK  2(1Q41) WILD-TYPE      5      1      2      4      5      4
D35V14, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  2(1Q41) MUTATED"
clus
  DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE 
                          1                          21 
                 TCGA-04-1652                  TCGA-09-2054 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-13-0908                  TCGA-23-2077 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-1928                  TCGA-24-2036 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-1918                  TCGA-61-2088 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-2098                  TCGA-61-2109 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-2111 
"DEL PEAK  2(1Q41) WILD-TYPE" 

Clustering(36) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       35     21     23     40
  DEL PEAK  3(2P25.3) WILD-TYPE    141     91     95    111
D36V1, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          35                           141
  CLUS_2                          21                            91
  CLUS_3                          23                            95
  CLUS_4                          40                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       73     32     14
  DEL PEAK  3(2P25.3) WILD-TYPE    237    126     75
D36V2, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          73                           237
  CLUS_2                          32                           126
  CLUS_3                          14                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       43     22     53
  DEL PEAK  3(2P25.3) WILD-TYPE    138    109    190
D36V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          43                           138
  CLUS_2                          22                           109
  CLUS_3                          53                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED       15      18     10     19      4     15
  DEL PEAK  3(2P25.3) WILD-TYPE     70      39     48     63     30     60
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(2P25.3) MUTATED        8     13      7      9
  DEL PEAK  3(2P25.3) WILD-TYPE     26     23     45     33
D36V4, multiclass
         clus
vv        DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           15                            70
  CLUS_10                          18                            39
  CLUS_2                           10                            48
  CLUS_3                           19                            63
  CLUS_4                            4                            30
  CLUS_5                           15                            60
  CLUS_6                            8                            26
  CLUS_7                           13                            23
  CLUS_8                            7                            45
  CLUS_9                            9                            33
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       53     23     44
  DEL PEAK  3(2P25.3) WILD-TYPE    189    107    163
D36V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          53                           189
  CLUS_2                          23                           107
  CLUS_3                          44                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       26     20     35     39
  DEL PEAK  3(2P25.3) WILD-TYPE     87     78    152    131
D36V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          26                            87
  CLUS_2                          20                            78
  CLUS_3                          35                           152
  CLUS_4                          39                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       29     44     13
  DEL PEAK  3(2P25.3) WILD-TYPE    117    145     63
D36V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          29                           117
  CLUS_2                          44                           145
  CLUS_3                          13                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       29     13     14     30
  DEL PEAK  3(2P25.3) WILD-TYPE    114     41     46    124
D36V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          29                           114
  CLUS_2                          13                            41
  CLUS_3                          14                            46
  CLUS_4                          30                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       23     18     23
  DEL PEAK  3(2P25.3) WILD-TYPE     56     91     89
D36V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          23                            56
  CLUS_2                          18                            91
  CLUS_3                          23                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       32     10     22
  DEL PEAK  3(2P25.3) WILD-TYPE    114     49     73
D36V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          32                           114
  CLUS_2                          10                            49
  CLUS_3                          22                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       13     35     28     22
  DEL PEAK  3(2P25.3) WILD-TYPE     58    100    113     78
D36V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          13                            58
  CLUS_2                          35                           100
  CLUS_3                          28                           113
  CLUS_4                          22                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       21     16     38     23
  DEL PEAK  3(2P25.3) WILD-TYPE     84     55    127     83
D36V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                            84
  CLUS_2                          16                            55
  CLUS_3                          38                           127
  CLUS_4                          23                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        3      2      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE      3      4      5      3
D36V13, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           2                             4
  CLUS_3                           0                             5
  CLUS_4                           2                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        1      1      0      1      2      2
  DEL PEAK  3(2P25.3) WILD-TYPE      4      1      2      3      3      2
D36V14, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           1                             3
  CLUS_5                           2                             3
  CLUS_6                           2                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       40     29     21     42
  DEL PEAK  4(2Q22.1) WILD-TYPE    136     83     97    109
D37V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          40                           136
  CLUS_2                          29                            83
  CLUS_3                          21                            97
  CLUS_4                          42                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       80     36     16
  DEL PEAK  4(2Q22.1) WILD-TYPE    230    122     73
D37V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          80                           230
  CLUS_2                          36                           122
  CLUS_3                          16                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       53     29     50
  DEL PEAK  4(2Q22.1) WILD-TYPE    128    102    193
D37V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          53                           128
  CLUS_2                          29                           102
  CLUS_3                          50                           193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED       21       8      8     20     14     18
  DEL PEAK  4(2Q22.1) WILD-TYPE     64      49     50     62     20     57
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  4(2Q22.1) MUTATED        4     17     12     10
  DEL PEAK  4(2Q22.1) WILD-TYPE     30     19     40     32
D37V4, multiclass
         clus
vv        DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           21                            64
  CLUS_10                           8                            49
  CLUS_2                            8                            50
  CLUS_3                           20                            62
  CLUS_4                           14                            20
  CLUS_5                           18                            57
  CLUS_6                            4                            30
  CLUS_7                           17                            19
  CLUS_8                           12                            40
  CLUS_9                           10                            32
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       55     22     59
  DEL PEAK  4(2Q22.1) WILD-TYPE    187    108    148
D37V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          55                           187
  CLUS_2                          22                           108
  CLUS_3                          59                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       32     27     42     34
  DEL PEAK  4(2Q22.1) WILD-TYPE     81     71    145    136
D37V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          32                            81
  CLUS_2                          27                            71
  CLUS_3                          42                           145
  CLUS_4                          34                           136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       35     45     19
  DEL PEAK  4(2Q22.1) WILD-TYPE    111    144     57
D37V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          35                           111
  CLUS_2                          45                           144
  CLUS_3                          19                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       35     12     13     39
  DEL PEAK  4(2Q22.1) WILD-TYPE    108     42     47    115
D37V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          35                           108
  CLUS_2                          12                            42
  CLUS_3                          13                            47
  CLUS_4                          39                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       23     24     24
  DEL PEAK  4(2Q22.1) WILD-TYPE     56     85     88
D37V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          23                            56
  CLUS_2                          24                            85
  CLUS_3                          24                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       33     16     22
  DEL PEAK  4(2Q22.1) WILD-TYPE    113     43     73
D37V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          33                           113
  CLUS_2                          16                            43
  CLUS_3                          22                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       14     34     32     26
  DEL PEAK  4(2Q22.1) WILD-TYPE     57    101    109     74
D37V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          14                            57
  CLUS_2                          34                           101
  CLUS_3                          32                           109
  CLUS_4                          26                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       30     16     38     22
  DEL PEAK  4(2Q22.1) WILD-TYPE     75     55    127     84
D37V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          30                            75
  CLUS_2                          16                            55
  CLUS_3                          38                           127
  CLUS_4                          22                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        1      2      1      2
  DEL PEAK  4(2Q22.1) WILD-TYPE      5      4      4      3
D37V13, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           2                             4
  CLUS_3                           1                             4
  CLUS_4                           2                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        0      1      0      1      2      2
  DEL PEAK  4(2Q22.1) WILD-TYPE      5      1      2      3      3      2
D37V14, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           1                             3
  CLUS_5                           2                             3
  CLUS_6                           2                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       43     35     27     65
  DEL PEAK  5(2Q37.3) WILD-TYPE    133     77     91     86
D38V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          43                           133
  CLUS_2                          35                            77
  CLUS_3                          27                            91
  CLUS_4                          65                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       95     52     23
  DEL PEAK  5(2Q37.3) WILD-TYPE    215    106     66
D38V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          95                           215
  CLUS_2                          52                           106
  CLUS_3                          23                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       58     39     73
  DEL PEAK  5(2Q37.3) WILD-TYPE    123     92    170
D38V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          58                           123
  CLUS_2                          39                            92
  CLUS_3                          73                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       23      12     16     31     10     24
  DEL PEAK  5(2Q37.3) WILD-TYPE     62      45     42     51     24     51
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(2Q37.3) MUTATED        5     20     14     15
  DEL PEAK  5(2Q37.3) WILD-TYPE     29     16     38     27
D38V4, multiclass
         clus
vv        DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           23                            62
  CLUS_10                          12                            45
  CLUS_2                           16                            42
  CLUS_3                           31                            51
  CLUS_4                           10                            24
  CLUS_5                           24                            51
  CLUS_6                            5                            29
  CLUS_7                           20                            16
  CLUS_8                           14                            38
  CLUS_9                           15                            27
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       68     23     84
  DEL PEAK  5(2Q37.3) WILD-TYPE    174    107    123
D38V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          68                           174
  CLUS_2                          23                           107
  CLUS_3                          84                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       44     24     58     47
  DEL PEAK  5(2Q37.3) WILD-TYPE     69     74    129    123
D38V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          44                            69
  CLUS_2                          24                            74
  CLUS_3                          58                           129
  CLUS_4                          47                           123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       44     56     24
  DEL PEAK  5(2Q37.3) WILD-TYPE    102    133     52
D38V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          44                           102
  CLUS_2                          56                           133
  CLUS_3                          24                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       44     16     23     41
  DEL PEAK  5(2Q37.3) WILD-TYPE     99     38     37    113
D38V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          44                            99
  CLUS_2                          16                            38
  CLUS_3                          23                            37
  CLUS_4                          41                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       30     27     42
  DEL PEAK  5(2Q37.3) WILD-TYPE     49     82     70
D38V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          27                            82
  CLUS_3                          42                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       51     15     33
  DEL PEAK  5(2Q37.3) WILD-TYPE     95     44     62
D38V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          51                            95
  CLUS_2                          15                            44
  CLUS_3                          33                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       19     51     34     36
  DEL PEAK  5(2Q37.3) WILD-TYPE     52     84    107     64
D38V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          19                            52
  CLUS_2                          51                            84
  CLUS_3                          34                           107
  CLUS_4                          36                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       45     18     52     25
  DEL PEAK  5(2Q37.3) WILD-TYPE     60     53    113     81
D38V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          45                            60
  CLUS_2                          18                            53
  CLUS_3                          52                           113
  CLUS_4                          25                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        3      2      1      0
  DEL PEAK  5(2Q37.3) WILD-TYPE      3      4      4      5
D38V13, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           2                             4
  CLUS_3                           1                             4
  CLUS_4                           0                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        1      0      1      2      1      1
  DEL PEAK  5(2Q37.3) WILD-TYPE      4      2      1      2      4      3
D38V14, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           0                             2
  CLUS_3                           1                             1
  CLUS_4                           2                             2
  CLUS_5                           1                             4
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  6(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       85     40     22     58
  DEL PEAK  6(3P26.2) WILD-TYPE     91     72     96     93
D39V1, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          85                            91
  CLUS_2                          40                            72
  CLUS_3                          22                            96
  CLUS_4                          58                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED      101     54     50
  DEL PEAK  6(3P26.2) WILD-TYPE    209    104     39
D39V2, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                         101                           209
  CLUS_2                          54                           104
  CLUS_3                          50                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       62     37    105
  DEL PEAK  6(3P26.2) WILD-TYPE    119     94    138
D39V3, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          62                           119
  CLUS_2                          37                            94
  CLUS_3                         105                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.2) MUTATED       29      20     12     34     13     26
  DEL PEAK  6(3P26.2) WILD-TYPE     56      37     46     48     21     49
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3P26.2) MUTATED       18     16     28      8
  DEL PEAK  6(3P26.2) WILD-TYPE     16     20     24     34
D39V4, multiclass
         clus
vv        DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                           29                            56
  CLUS_10                          20                            37
  CLUS_2                           12                            46
  CLUS_3                           34                            48
  CLUS_4                           13                            21
  CLUS_5                           26                            49
  CLUS_6                           18                            16
  CLUS_7                           16                            20
  CLUS_8                           28                            24
  CLUS_9                            8                            34
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED      125     28     57
  DEL PEAK  6(3P26.2) WILD-TYPE    117    102    150
D39V5, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                         125                           117
  CLUS_2                          28                           102
  CLUS_3                          57                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       51     40     41     77
  DEL PEAK  6(3P26.2) WILD-TYPE     62     58    146     93
D39V6, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          51                            62
  CLUS_2                          40                            58
  CLUS_3                          41                           146
  CLUS_4                          77                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       50     66     20
  DEL PEAK  6(3P26.2) WILD-TYPE     96    123     56
D39V7, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          50                            96
  CLUS_2                          66                           123
  CLUS_3                          20                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       50     19     26     41
  DEL PEAK  6(3P26.2) WILD-TYPE     93     35     34    113
D39V8, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          50                            93
  CLUS_2                          19                            35
  CLUS_3                          26                            34
  CLUS_4                          41                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       16     46     50
  DEL PEAK  6(3P26.2) WILD-TYPE     63     63     62
D39V9, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          16                            63
  CLUS_2                          46                            63
  CLUS_3                          50                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       39     29     44
  DEL PEAK  6(3P26.2) WILD-TYPE    107     30     51
D39V10, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          39                           107
  CLUS_2                          29                            30
  CLUS_3                          44                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       27     49     49     43
  DEL PEAK  6(3P26.2) WILD-TYPE     44     86     92     57
D39V11, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          27                            44
  CLUS_2                          49                            86
  CLUS_3                          49                            92
  CLUS_4                          43                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       32     25     74     37
  DEL PEAK  6(3P26.2) WILD-TYPE     73     46     91     69
D39V12, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          32                            73
  CLUS_2                          25                            46
  CLUS_3                          74                            91
  CLUS_4                          37                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED        5      5      2      1
  DEL PEAK  6(3P26.2) WILD-TYPE      1      1      3      4
D39V13, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           5                             1
  CLUS_3                           2                             3
  CLUS_4                           1                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.2) MUTATED        3      2      1      3      3      1
  DEL PEAK  6(3P26.2) WILD-TYPE      2      0      1      1      2      3
D39V14, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           2                             0
  CLUS_3                           1                             1
  CLUS_4                           3                             1
  CLUS_5                           3                             2
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       28     20     23     11
  DEL PEAK  7(3Q13.31) WILD-TYPE    148     92     95    140
D40V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           28                            148
  CLUS_2                           20                             92
  CLUS_3                           23                             95
  CLUS_4                           11                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       39     26     17
  DEL PEAK  7(3Q13.31) WILD-TYPE    271    132     72
D40V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           39                            271
  CLUS_2                           26                            132
  CLUS_3                           17                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       28     20     34
  DEL PEAK  7(3Q13.31) WILD-TYPE    153    111    209
D40V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           28                            153
  CLUS_2                           20                            111
  CLUS_3                           34                            209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED       11      13      6     13      6      9
  DEL PEAK  7(3Q13.31) WILD-TYPE     74      44     52     69     28     66
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3Q13.31) MUTATED        6      3     10      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     28     33     42     37
D40V4, multiclass
         clus
vv        DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            11                             74
  CLUS_10                           13                             44
  CLUS_2                             6                             52
  CLUS_3                            13                             69
  CLUS_4                             6                             28
  CLUS_5                             9                             66
  CLUS_6                             6                             28
  CLUS_7                             3                             33
  CLUS_8                            10                             42
  CLUS_9                             5                             37
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       42     20     22
  DEL PEAK  7(3Q13.31) WILD-TYPE    200    110    185
D40V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           42                            200
  CLUS_2                           20                            110
  CLUS_3                           22                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       19     13     19     33
  DEL PEAK  7(3Q13.31) WILD-TYPE     94     85    168    137
D40V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           19                             94
  CLUS_2                           13                             85
  CLUS_3                           19                            168
  CLUS_4                           33                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       23     33      7
  DEL PEAK  7(3Q13.31) WILD-TYPE    123    156     69
D40V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           23                            123
  CLUS_2                           33                            156
  CLUS_3                            7                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       27      7     14     15
  DEL PEAK  7(3Q13.31) WILD-TYPE    116     47     46    139
D40V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                            7                             47
  CLUS_3                           14                             46
  CLUS_4                           15                            139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        5     16     21
  DEL PEAK  7(3Q13.31) WILD-TYPE     74     93     91
D40V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            5                             74
  CLUS_2                           16                             93
  CLUS_3                           21                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       14     11     17
  DEL PEAK  7(3Q13.31) WILD-TYPE    132     48     78
D40V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           14                            132
  CLUS_2                           11                             48
  CLUS_3                           17                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       11     23     17     15
  DEL PEAK  7(3Q13.31) WILD-TYPE     60    112    124     85
D40V11, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           11                             60
  CLUS_2                           23                            112
  CLUS_3                           17                            124
  CLUS_4                           15                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       19      9     26     12
  DEL PEAK  7(3Q13.31) WILD-TYPE     86     62    139     94
D40V12, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                            9                             62
  CLUS_3                           26                            139
  CLUS_4                           12                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1      1      0      0
  DEL PEAK  7(3Q13.31) WILD-TYPE      5      5      5      5
D40V13, multiclass
[1] "Remove cluster labels:"       "DEL PEAK  7(3Q13.31) MUTATED"
clus
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                             2                             20 
                    TCGA-09-2054                     TCGA-13-0908 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-23-2077                     TCGA-24-1928 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2036                     TCGA-24-2288 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2289                     TCGA-24-2290 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2297                     TCGA-25-2392 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-25-2399                     TCGA-25-2400 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-25-2404                     TCGA-57-1994 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-59-2363                     TCGA-61-1918 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-61-2088                     TCGA-61-2098 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-61-2109                     TCGA-61-2111 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        1      1      0      0      0      0
  DEL PEAK  7(3Q13.31) WILD-TYPE      4      1      2      4      5      4
D40V14, multiclass
[1] "Remove cluster labels:"       "DEL PEAK  7(3Q13.31) MUTATED"
clus
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                             2                             20 
                    TCGA-09-2054                     TCGA-13-0908 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-23-2077                     TCGA-24-1928 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2036                     TCGA-24-2288 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2289                     TCGA-24-2290 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2297                     TCGA-25-2392 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-25-2399                     TCGA-25-2400 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-25-2404                     TCGA-57-1994 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-59-2363                     TCGA-61-1918 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-61-2088                     TCGA-61-2098 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-61-2109                     TCGA-61-2111 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 

Clustering(41) Variable = DEL PEAK  8(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED      129     71     78     99
  DEL PEAK  8(4Q22.1) WILD-TYPE     47     41     40     52
D41V1, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         129                            47
  CLUS_2                          71                            41
  CLUS_3                          78                            40
  CLUS_4                          99                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      212     96     69
  DEL PEAK  8(4Q22.1) WILD-TYPE     98     62     20
D41V2, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         212                            98
  CLUS_2                          96                            62
  CLUS_3                          69                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      126     85    165
  DEL PEAK  8(4Q22.1) WILD-TYPE     55     46     78
D41V3, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         126                            55
  CLUS_2                          85                            46
  CLUS_3                         165                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED       57      39     39     57     17     46
  DEL PEAK  8(4Q22.1) WILD-TYPE     28      18     19     25     17     29
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(4Q22.1) MUTATED       25     26     43     27
  DEL PEAK  8(4Q22.1) WILD-TYPE      9     10      9     15
D41V4, multiclass
         clus
vv        DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           57                            28
  CLUS_10                          39                            18
  CLUS_2                           39                            19
  CLUS_3                           57                            25
  CLUS_4                           17                            17
  CLUS_5                           46                            29
  CLUS_6                           25                             9
  CLUS_7                           26                            10
  CLUS_8                           43                             9
  CLUS_9                           27                            15
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      185     85    124
  DEL PEAK  8(4Q22.1) WILD-TYPE     57     45     83
D41V5, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         185                            57
  CLUS_2                          85                            45
  CLUS_3                         124                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       78     65    125    119
  DEL PEAK  8(4Q22.1) WILD-TYPE     35     33     62     51
D41V6, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          78                            35
  CLUS_2                          65                            33
  CLUS_3                         125                            62
  CLUS_4                         119                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       91    138     47
  DEL PEAK  8(4Q22.1) WILD-TYPE     55     51     29
D41V7, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          91                            55
  CLUS_2                         138                            51
  CLUS_3                          47                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       93     36     41    106
  DEL PEAK  8(4Q22.1) WILD-TYPE     50     18     19     48
D41V8, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          93                            50
  CLUS_2                          36                            18
  CLUS_3                          41                            19
  CLUS_4                         106                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       54     78     75
  DEL PEAK  8(4Q22.1) WILD-TYPE     25     31     37
D41V9, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          54                            25
  CLUS_2                          78                            31
  CLUS_3                          75                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      101     43     63
  DEL PEAK  8(4Q22.1) WILD-TYPE     45     16     32
D41V10, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         101                            45
  CLUS_2                          43                            16
  CLUS_3                          63                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       42     91    104     68
  DEL PEAK  8(4Q22.1) WILD-TYPE     29     44     37     32
D41V11, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          42                            29
  CLUS_2                          91                            44
  CLUS_3                         104                            37
  CLUS_4                          68                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       66     48    111     80
  DEL PEAK  8(4Q22.1) WILD-TYPE     39     23     54     26
D41V12, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          66                            39
  CLUS_2                          48                            23
  CLUS_3                         111                            54
  CLUS_4                          80                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED        4      4      2      4
  DEL PEAK  8(4Q22.1) WILD-TYPE      2      2      3      1
D41V13, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           4                             2
  CLUS_3                           2                             3
  CLUS_4                           4                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED        3      2      0      2      4      3
  DEL PEAK  8(4Q22.1) WILD-TYPE      2      0      2      2      1      1
D41V14, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           2                             0
  CLUS_3                           0                             2
  CLUS_4                           2                             2
  CLUS_5                           4                             1
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK  9(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED      137     76     88    104
  DEL PEAK  9(4Q34.3) WILD-TYPE     39     36     30     47
D42V1, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         137                            39
  CLUS_2                          76                            36
  CLUS_3                          88                            30
  CLUS_4                         104                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      226    102     77
  DEL PEAK  9(4Q34.3) WILD-TYPE     84     56     12
D42V2, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         226                            84
  CLUS_2                         102                            56
  CLUS_3                          77                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      136     86    182
  DEL PEAK  9(4Q34.3) WILD-TYPE     45     45     61
D42V3, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         136                            45
  CLUS_2                          86                            45
  CLUS_3                         182                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q34.3) MUTATED       66      42     41     65     22     49
  DEL PEAK  9(4Q34.3) WILD-TYPE     19      15     17     17     12     26
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4Q34.3) MUTATED       29     24     43     23
  DEL PEAK  9(4Q34.3) WILD-TYPE      5     12      9     19
D42V4, multiclass
         clus
vv        DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           66                            19
  CLUS_10                          42                            15
  CLUS_2                           41                            17
  CLUS_3                           65                            17
  CLUS_4                           22                            12
  CLUS_5                           49                            26
  CLUS_6                           29                             5
  CLUS_7                           24                            12
  CLUS_8                           43                             9
  CLUS_9                           23                            19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      185     82    154
  DEL PEAK  9(4Q34.3) WILD-TYPE     57     48     53
D42V5, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         185                            57
  CLUS_2                          82                            48
  CLUS_3                         154                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       81     81    128    124
  DEL PEAK  9(4Q34.3) WILD-TYPE     32     17     59     46
D42V6, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          81                            32
  CLUS_2                          81                            17
  CLUS_3                         128                            59
  CLUS_4                         124                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      104    140     55
  DEL PEAK  9(4Q34.3) WILD-TYPE     42     49     21
D42V7, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         104                            42
  CLUS_2                         140                            49
  CLUS_3                          55                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       98     36     44    121
  DEL PEAK  9(4Q34.3) WILD-TYPE     45     18     16     33
D42V8, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          98                            45
  CLUS_2                          36                            18
  CLUS_3                          44                            16
  CLUS_4                         121                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       64     79     72
  DEL PEAK  9(4Q34.3) WILD-TYPE     15     30     40
D42V9, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          64                            15
  CLUS_2                          79                            30
  CLUS_3                          72                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      110     46     59
  DEL PEAK  9(4Q34.3) WILD-TYPE     36     13     36
D42V10, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         110                            36
  CLUS_2                          46                            13
  CLUS_3                          59                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       50     94    108     70
  DEL PEAK  9(4Q34.3) WILD-TYPE     21     41     33     30
D42V11, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          50                            21
  CLUS_2                          94                            41
  CLUS_3                         108                            33
  CLUS_4                          70                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       75     51    114     82
  DEL PEAK  9(4Q34.3) WILD-TYPE     30     20     51     24
D42V12, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          75                            30
  CLUS_2                          51                            20
  CLUS_3                         114                            51
  CLUS_4                          82                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED        5      5      4      3
  DEL PEAK  9(4Q34.3) WILD-TYPE      1      1      1      2
D42V13, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           5                             1
  CLUS_3                           4                             1
  CLUS_4                           3                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED        4      2      1      3      4      3
  DEL PEAK  9(4Q34.3) WILD-TYPE      1      0      1      1      1      1
D42V14, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           2                             0
  CLUS_3                           1                             1
  CLUS_4                           3                             1
  CLUS_5                           4                             1
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 10(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED      116     65     62     99
  DEL PEAK 10(5Q12.1) WILD-TYPE     60     47     56     52
D43V1, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         116                            60
  CLUS_2                          65                            47
  CLUS_3                          62                            56
  CLUS_4                          99                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED      189     96     57
  DEL PEAK 10(5Q12.1) WILD-TYPE    121     62     32
D43V2, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         189                           121
  CLUS_2                          96                            62
  CLUS_3                          57                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED      116     73    153
  DEL PEAK 10(5Q12.1) WILD-TYPE     65     58     90
D43V3, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         116                            65
  CLUS_2                          73                            58
  CLUS_3                         153                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       49      29     33     45     22     48
  DEL PEAK 10(5Q12.1) WILD-TYPE     36      28     25     37     12     27
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(5Q12.1) MUTATED       24     30     37     25
  DEL PEAK 10(5Q12.1) WILD-TYPE     10      6     15     17
D43V4, multiclass
         clus
vv        DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           49                            36
  CLUS_10                          29                            28
  CLUS_2                           33                            25
  CLUS_3                           45                            37
  CLUS_4                           22                            12
  CLUS_5                           48                            27
  CLUS_6                           24                            10
  CLUS_7                           30                             6
  CLUS_8                           37                            15
  CLUS_9                           25                            17
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED      165     46    144
  DEL PEAK 10(5Q12.1) WILD-TYPE     77     84     63
D43V5, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         165                            77
  CLUS_2                          46                            84
  CLUS_3                         144                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       73     51    108    116
  DEL PEAK 10(5Q12.1) WILD-TYPE     40     47     79     54
D43V6, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          73                            40
  CLUS_2                          51                            47
  CLUS_3                         108                            79
  CLUS_4                         116                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       93    113     48
  DEL PEAK 10(5Q12.1) WILD-TYPE     53     76     28
D43V7, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          93                            53
  CLUS_2                         113                            76
  CLUS_3                          48                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       89     30     38     97
  DEL PEAK 10(5Q12.1) WILD-TYPE     54     24     22     57
D43V8, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          89                            54
  CLUS_2                          30                            24
  CLUS_3                          38                            22
  CLUS_4                          97                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       42     66     72
  DEL PEAK 10(5Q12.1) WILD-TYPE     37     43     40
D43V9, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          42                            37
  CLUS_2                          66                            43
  CLUS_3                          72                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       81     38     61
  DEL PEAK 10(5Q12.1) WILD-TYPE     65     21     34
D43V10, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          81                            65
  CLUS_2                          38                            21
  CLUS_3                          61                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       48     92     79     61
  DEL PEAK 10(5Q12.1) WILD-TYPE     23     43     62     39
D43V11, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          48                            23
  CLUS_2                          92                            43
  CLUS_3                          79                            62
  CLUS_4                          61                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       72     43    106     59
  DEL PEAK 10(5Q12.1) WILD-TYPE     33     28     59     47
D43V12, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          72                            33
  CLUS_2                          43                            28
  CLUS_3                         106                            59
  CLUS_4                          59                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED        4      4      2      5
  DEL PEAK 10(5Q12.1) WILD-TYPE      2      2      3      0
D43V13, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           4                             2
  CLUS_3                           2                             3
  CLUS_4                           5                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED        3      2      0      2      4      4
  DEL PEAK 10(5Q12.1) WILD-TYPE      2      0      2      2      1      0
D43V14, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           2                             0
  CLUS_3                           0                             2
  CLUS_4                           2                             2
  CLUS_5                           4                             1
  CLUS_6                           4                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 11(5Q13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED      128     81     79    115
  DEL PEAK 11(5Q13.2) WILD-TYPE     48     31     39     36
D44V1, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         128                            48
  CLUS_2                          81                            31
  CLUS_3                          79                            39
  CLUS_4                         115                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      219    118     66
  DEL PEAK 11(5Q13.2) WILD-TYPE     91     40     23
D44V2, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         219                            91
  CLUS_2                         118                            40
  CLUS_3                          66                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      134     92    177
  DEL PEAK 11(5Q13.2) WILD-TYPE     47     39     66
D44V3, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         134                            47
  CLUS_2                          92                            39
  CLUS_3                         177                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q13.2) MUTATED       57      36     40     58     25     57
  DEL PEAK 11(5Q13.2) WILD-TYPE     28      21     18     24      9     18
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(5Q13.2) MUTATED       29     31     38     32
  DEL PEAK 11(5Q13.2) WILD-TYPE      5      5     14     10
D44V4, multiclass
         clus
vv        DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                           57                            28
  CLUS_10                          36                            21
  CLUS_2                           40                            18
  CLUS_3                           58                            24
  CLUS_4                           25                             9
  CLUS_5                           57                            18
  CLUS_6                           29                             5
  CLUS_7                           31                             5
  CLUS_8                           38                            14
  CLUS_9                           32                            10
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      177     63    179
  DEL PEAK 11(5Q13.2) WILD-TYPE     65     67     28
D44V5, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         177                            65
  CLUS_2                          63                            67
  CLUS_3                         179                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED       86     62    137    126
  DEL PEAK 11(5Q13.2) WILD-TYPE     27     36     50     44
D44V6, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          86                            27
  CLUS_2                          62                            36
  CLUS_3                         137                            50
  CLUS_4                         126                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      110    132     53
  DEL PEAK 11(5Q13.2) WILD-TYPE     36     57     23
D44V7, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         110                            36
  CLUS_2                         132                            57
  CLUS_3                          53                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED      102     40     44    109
  DEL PEAK 11(5Q13.2) WILD-TYPE     41     14     16     45
D44V8, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         102                            41
  CLUS_2                          40                            14
  CLUS_3                          44                            16
  CLUS_4                         109                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       56     76     87
  DEL PEAK 11(5Q13.2) WILD-TYPE     23     33     25
D44V9, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          56                            23
  CLUS_2                          76                            33
  CLUS_3                          87                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      100     42     77
  DEL PEAK 11(5Q13.2) WILD-TYPE     46     17     18
D44V10, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         100                            46
  CLUS_2                          42                            17
  CLUS_3                          77                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED       54    104     97     73
  DEL PEAK 11(5Q13.2) WILD-TYPE     17     31     44     27
D44V11, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          54                            17
  CLUS_2                         104                            31
  CLUS_3                          97                            44
  CLUS_4                          73                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED       86     50    120     72
  DEL PEAK 11(5Q13.2) WILD-TYPE     19     21     45     34
D44V12, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          86                            19
  CLUS_2                          50                            21
  CLUS_3                         120                            45
  CLUS_4                          72                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED        5      4      4      5
  DEL PEAK 11(5Q13.2) WILD-TYPE      1      2      1      0
D44V13, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           4                             2
  CLUS_3                           4                             1
  CLUS_4                           5                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q13.2) MUTATED        4      2      1      2      5      4
  DEL PEAK 11(5Q13.2) WILD-TYPE      1      0      1      2      0      0
D44V14, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           2                             0
  CLUS_3                           1                             1
  CLUS_4                           2                             2
  CLUS_5                           5                             0
  CLUS_6                           4                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 12(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED      101     81     86     98
  DEL PEAK 12(6Q27) WILD-TYPE     75     31     32     53
D45V1, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       101                          75
  CLUS_2                        81                          31
  CLUS_3                        86                          32
  CLUS_4                        98                          53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      198    115     53
  DEL PEAK 12(6Q27) WILD-TYPE    112     43     36
D45V2, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       198                         112
  CLUS_2                       115                          43
  CLUS_3                        53                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      119     92    155
  DEL PEAK 12(6Q27) WILD-TYPE     62     39     88
D45V3, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       119                          62
  CLUS_2                        92                          39
  CLUS_3                       155                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q27) MUTATED       60      39     41     52     21     57     21
  DEL PEAK 12(6Q27) WILD-TYPE     25      18     17     30     13     18     13
                             vv
clus                          CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(6Q27) MUTATED       23     24     28
  DEL PEAK 12(6Q27) WILD-TYPE     13     28     14
D45V4, multiclass
         clus
vv        DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         60                          25
  CLUS_10                        39                          18
  CLUS_2                         41                          17
  CLUS_3                         52                          30
  CLUS_4                         21                          13
  CLUS_5                         57                          18
  CLUS_6                         21                          13
  CLUS_7                         23                          13
  CLUS_8                         24                          28
  CLUS_9                         28                          14
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      124     91    165
  DEL PEAK 12(6Q27) WILD-TYPE    118     39     42
D45V5, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       124                         118
  CLUS_2                        91                          39
  CLUS_3                       165                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       66     66    144     99
  DEL PEAK 12(6Q27) WILD-TYPE     47     32     43     71
D45V6, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        66                          47
  CLUS_2                        66                          32
  CLUS_3                       144                          43
  CLUS_4                        99                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       94    119     50
  DEL PEAK 12(6Q27) WILD-TYPE     52     70     26
D45V7, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        94                          52
  CLUS_2                       119                          70
  CLUS_3                        50                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       90     37     39     97
  DEL PEAK 12(6Q27) WILD-TYPE     53     17     21     57
D45V8, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        90                          53
  CLUS_2                        37                          17
  CLUS_3                        39                          21
  CLUS_4                        97                          57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       57     52     78
  DEL PEAK 12(6Q27) WILD-TYPE     22     57     34
D45V9, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        57                          22
  CLUS_2                        52                          57
  CLUS_3                        78                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       92     26     69
  DEL PEAK 12(6Q27) WILD-TYPE     54     33     26
D45V10, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        92                          54
  CLUS_2                        26                          33
  CLUS_3                        69                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       43     91     95     61
  DEL PEAK 12(6Q27) WILD-TYPE     28     44     46     39
D45V11, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        43                          28
  CLUS_2                        91                          44
  CLUS_3                        95                          46
  CLUS_4                        61                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       79     43     96     72
  DEL PEAK 12(6Q27) WILD-TYPE     26     28     69     34
D45V12, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        79                          26
  CLUS_2                        43                          28
  CLUS_3                        96                          69
  CLUS_4                        72                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED        4      1      4      1
  DEL PEAK 12(6Q27) WILD-TYPE      2      5      1      4
D45V13, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         4                           2
  CLUS_2                         1                           5
  CLUS_3                         4                           1
  CLUS_4                         1                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q27) MUTATED        4      0      2      1      1      2
  DEL PEAK 12(6Q27) WILD-TYPE      1      2      0      3      4      2
D45V14, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         4                           1
  CLUS_2                         0                           2
  CLUS_3                         2                           0
  CLUS_4                         1                           3
  CLUS_5                         1                           4
  CLUS_6                         2                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 13(7P22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.2) MUTATED       82     48     32     81
  DEL PEAK 13(7P22.2) WILD-TYPE     94     64     86     70
D46V1, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          82                            94
  CLUS_2                          48                            64
  CLUS_3                          32                            86
  CLUS_4                          81                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.2) MUTATED      132     75     36
  DEL PEAK 13(7P22.2) WILD-TYPE    178     83     53
D46V2, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                         132                           178
  CLUS_2                          75                            83
  CLUS_3                          36                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.2) MUTATED       87     58     98
  DEL PEAK 13(7P22.2) WILD-TYPE     94     73    145
D46V3, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          87                            94
  CLUS_2                          58                            73
  CLUS_3                          98                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.2) MUTATED       36      30     24     34     15     28
  DEL PEAK 13(7P22.2) WILD-TYPE     49      27     34     48     19     47
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(7P22.2) MUTATED       10     20     18     28
  DEL PEAK 13(7P22.2) WILD-TYPE     24     16     34     14
D46V4, multiclass
         clus
vv        DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                           36                            49
  CLUS_10                          30                            27
  CLUS_2                           24                            34
  CLUS_3                           34                            48
  CLUS_4                           15                            19
  CLUS_5                           28                            47
  CLUS_6                           10                            24
  CLUS_7                           20                            16
  CLUS_8                           18                            34
  CLUS_9                           28                            14
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.2) MUTATED       87     35    131
  DEL PEAK 13(7P22.2) WILD-TYPE    155     95     76
D46V5, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          87                           155
  CLUS_2                          35                            95
  CLUS_3                         131                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.2) MUTATED       53     42     82     70
  DEL PEAK 13(7P22.2) WILD-TYPE     60     56    105    100
D46V6, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          53                            60
  CLUS_2                          42                            56
  CLUS_3                          82                           105
  CLUS_4                          70                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.2) MUTATED       64     86     33
  DEL PEAK 13(7P22.2) WILD-TYPE     82    103     43
D46V7, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          64                            82
  CLUS_2                          86                           103
  CLUS_3                          33                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.2) MUTATED       67     26     26     64
  DEL PEAK 13(7P22.2) WILD-TYPE     76     28     34     90
D46V8, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          67                            76
  CLUS_2                          26                            28
  CLUS_3                          26                            34
  CLUS_4                          64                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.2) MUTATED       39     47     58
  DEL PEAK 13(7P22.2) WILD-TYPE     40     62     54
D46V9, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          39                            40
  CLUS_2                          47                            62
  CLUS_3                          58                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.2) MUTATED       71     26     47
  DEL PEAK 13(7P22.2) WILD-TYPE     75     33     48
D46V10, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          71                            75
  CLUS_2                          26                            33
  CLUS_3                          47                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.2) MUTATED       31     56     64     53
  DEL PEAK 13(7P22.2) WILD-TYPE     40     79     77     47
D46V11, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          31                            40
  CLUS_2                          56                            79
  CLUS_3                          64                            77
  CLUS_4                          53                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.2) MUTATED       49     32     76     47
  DEL PEAK 13(7P22.2) WILD-TYPE     56     39     89     59
D46V12, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                          49                            56
  CLUS_2                          32                            39
  CLUS_3                          76                            89
  CLUS_4                          47                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.2) MUTATED        2      2      2      4
  DEL PEAK 13(7P22.2) WILD-TYPE      4      4      3      1
D46V13, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           2                             4
  CLUS_3                           2                             3
  CLUS_4                           4                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7P22.2) MUTATED        2      1      1      1      2      3
  DEL PEAK 13(7P22.2) WILD-TYPE      3      1      1      3      3      1
D46V14, multiclass
        clus
vv       DEL PEAK 13(7P22.2) MUTATED DEL PEAK 13(7P22.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           1                             3
  CLUS_5                           2                             3
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED      111     76     70    117
  DEL PEAK 14(8P23.3) WILD-TYPE     65     36     48     34
D47V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         111                            65
  CLUS_2                          76                            36
  CLUS_3                          70                            48
  CLUS_4                         117                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      211    111     52
  DEL PEAK 14(8P23.3) WILD-TYPE     99     47     37
D47V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         211                            99
  CLUS_2                         111                            47
  CLUS_3                          52                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      126     90    159
  DEL PEAK 14(8P23.3) WILD-TYPE     55     41     84
D47V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         126                            55
  CLUS_2                          90                            41
  CLUS_3                         159                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       57      36     34     61     30     53
  DEL PEAK 14(8P23.3) WILD-TYPE     28      21     24     21      4     22
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(8P23.3) MUTATED       15     27     33     29
  DEL PEAK 14(8P23.3) WILD-TYPE     19      9     19     13
D47V4, multiclass
         clus
vv        DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                           57                            28
  CLUS_10                          36                            21
  CLUS_2                           34                            24
  CLUS_3                           61                            21
  CLUS_4                           30                             4
  CLUS_5                           53                            22
  CLUS_6                           15                            19
  CLUS_7                           27                             9
  CLUS_8                           33                            19
  CLUS_9                           29                            13
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      166     59    163
  DEL PEAK 14(8P23.3) WILD-TYPE     76     71     44
D47V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         166                            76
  CLUS_2                          59                            71
  CLUS_3                         163                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       86     59    113    123
  DEL PEAK 14(8P23.3) WILD-TYPE     27     39     74     47
D47V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          86                            27
  CLUS_2                          59                            39
  CLUS_3                         113                            74
  CLUS_4                         123                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       98    131     50
  DEL PEAK 14(8P23.3) WILD-TYPE     48     58     26
D47V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          98                            48
  CLUS_2                         131                            58
  CLUS_3                          50                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       98     36     48     97
  DEL PEAK 14(8P23.3) WILD-TYPE     45     18     12     57
D47V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          98                            45
  CLUS_2                          36                            18
  CLUS_3                          48                            12
  CLUS_4                          97                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       58     75     77
  DEL PEAK 14(8P23.3) WILD-TYPE     21     34     35
D47V9, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          58                            21
  CLUS_2                          75                            34
  CLUS_3                          77                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      104     41     65
  DEL PEAK 14(8P23.3) WILD-TYPE     42     18     30
D47V10, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         104                            42
  CLUS_2                          41                            18
  CLUS_3                          65                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       48     94     88     74
  DEL PEAK 14(8P23.3) WILD-TYPE     23     41     53     26
D47V11, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          48                            23
  CLUS_2                          94                            41
  CLUS_3                          88                            53
  CLUS_4                          74                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       72     49    119     64
  DEL PEAK 14(8P23.3) WILD-TYPE     33     22     46     42
D47V12, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          72                            33
  CLUS_2                          49                            22
  CLUS_3                         119                            46
  CLUS_4                          64                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED        5      5      5      5
  DEL PEAK 14(8P23.3) WILD-TYPE      1      1      0      0
D47V13, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 14(8P23.3) WILD-TYPE"
clus
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           20                             2 
                 TCGA-04-1652                  TCGA-09-2050 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-09-2054                  TCGA-13-0908 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-23-2077                  TCGA-24-1928 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-61-1918                  TCGA-61-2088 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-61-2098                  TCGA-61-2111 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED        5      2      2      3      5      3
  DEL PEAK 14(8P23.3) WILD-TYPE      0      0      0      1      0      1
D47V14, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 14(8P23.3) WILD-TYPE"
clus
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           20                             2 
                 TCGA-04-1652                  TCGA-09-2050 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-09-2054                  TCGA-13-0908 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-23-2077                  TCGA-24-1928 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-61-1918                  TCGA-61-2088 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-61-2098                  TCGA-61-2111 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 

Clustering(48) Variable = DEL PEAK 15(8P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED      115     83     74    120
  DEL PEAK 15(8P21.2) WILD-TYPE     61     29     44     31
D48V1, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         115                            61
  CLUS_2                          83                            29
  CLUS_3                          74                            44
  CLUS_4                         120                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      216    120     56
  DEL PEAK 15(8P21.2) WILD-TYPE     94     38     33
D48V2, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         216                            94
  CLUS_2                         120                            38
  CLUS_3                          56                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      137     91    164
  DEL PEAK 15(8P21.2) WILD-TYPE     44     40     79
D48V3, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         137                            44
  CLUS_2                          91                            40
  CLUS_3                         164                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P21.2) MUTATED       66      35     39     56     30     51
  DEL PEAK 15(8P21.2) WILD-TYPE     19      22     19     26      4     24
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(8P21.2) MUTATED       16     30     36     33
  DEL PEAK 15(8P21.2) WILD-TYPE     18      6     16      9
D48V4, multiclass
         clus
vv        DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                           66                            19
  CLUS_10                          35                            22
  CLUS_2                           39                            19
  CLUS_3                           56                            26
  CLUS_4                           30                             4
  CLUS_5                           51                            24
  CLUS_6                           16                            18
  CLUS_7                           30                             6
  CLUS_8                           36                            16
  CLUS_9                           33                             9
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      169     68    169
  DEL PEAK 15(8P21.2) WILD-TYPE     73     62     38
D48V5, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         169                            73
  CLUS_2                          68                            62
  CLUS_3                         169                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED       87     64    119    130
  DEL PEAK 15(8P21.2) WILD-TYPE     26     34     68     40
D48V6, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          87                            26
  CLUS_2                          64                            34
  CLUS_3                         119                            68
  CLUS_4                         130                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      103    137     52
  DEL PEAK 15(8P21.2) WILD-TYPE     43     52     24
D48V7, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         103                            43
  CLUS_2                         137                            52
  CLUS_3                          52                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED       99     41     45    107
  DEL PEAK 15(8P21.2) WILD-TYPE     44     13     15     47
D48V8, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          99                            44
  CLUS_2                          41                            13
  CLUS_3                          45                            15
  CLUS_4                         107                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED       65     76     83
  DEL PEAK 15(8P21.2) WILD-TYPE     14     33     29
D48V9, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          65                            14
  CLUS_2                          76                            33
  CLUS_3                          83                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      112     42     70
  DEL PEAK 15(8P21.2) WILD-TYPE     34     17     25
D48V10, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         112                            34
  CLUS_2                          42                            17
  CLUS_3                          70                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED       48     99     97     72
  DEL PEAK 15(8P21.2) WILD-TYPE     23     36     44     28
D48V11, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          48                            23
  CLUS_2                          99                            36
  CLUS_3                          97                            44
  CLUS_4                          72                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED       70     53    121     72
  DEL PEAK 15(8P21.2) WILD-TYPE     35     18     44     34
D48V12, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          70                            35
  CLUS_2                          53                            18
  CLUS_3                         121                            44
  CLUS_4                          72                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED        6      5      5      4
  DEL PEAK 15(8P21.2) WILD-TYPE      0      1      0      1
D48V13, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 15(8P21.2) WILD-TYPE"
clus
  DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE 
                           20                             2 
                 TCGA-04-1652                  TCGA-09-2050 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-09-2054                  TCGA-13-0908 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-23-2077                  TCGA-24-1928 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-61-1918                  TCGA-61-2098 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-61-2109                  TCGA-61-2111 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P21.2) MUTATED        5      2      2      3      5      3
  DEL PEAK 15(8P21.2) WILD-TYPE      0      0      0      1      0      1
D48V14, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 15(8P21.2) WILD-TYPE"
clus
  DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE 
                           20                             2 
                 TCGA-04-1652                  TCGA-09-2050 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-09-2054                  TCGA-13-0908 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-23-2077                  TCGA-24-1928 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-61-1918                  TCGA-61-2098 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-61-2109                  TCGA-61-2111 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 

Clustering(49) Variable = DEL PEAK 16(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED       90     61     48     49
  DEL PEAK 16(9P24.3) WILD-TYPE     86     51     70    102
D49V1, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          90                            86
  CLUS_2                          61                            51
  CLUS_3                          48                            70
  CLUS_4                          49                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED      120     69     59
  DEL PEAK 16(9P24.3) WILD-TYPE    190     89     30
D49V2, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                         120                           190
  CLUS_2                          69                            89
  CLUS_3                          59                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       77     66    103
  DEL PEAK 16(9P24.3) WILD-TYPE    104     65    140
D49V3, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          77                           104
  CLUS_2                          66                            65
  CLUS_3                         103                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P24.3) MUTATED       34      21     28     30     18     27
  DEL PEAK 16(9P24.3) WILD-TYPE     51      36     30     52     16     48
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(9P24.3) MUTATED       16     16     36     20
  DEL PEAK 16(9P24.3) WILD-TYPE     18     20     16     22
D49V4, multiclass
         clus
vv        DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                           34                            51
  CLUS_10                          21                            36
  CLUS_2                           28                            30
  CLUS_3                           30                            52
  CLUS_4                           18                            16
  CLUS_5                           27                            48
  CLUS_6                           16                            18
  CLUS_7                           16                            20
  CLUS_8                           36                            16
  CLUS_9                           20                            22
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED      125     58     78
  DEL PEAK 16(9P24.3) WILD-TYPE    117     72    129
D49V5, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                         125                           117
  CLUS_2                          58                            72
  CLUS_3                          78                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED       57     57     58     85
  DEL PEAK 16(9P24.3) WILD-TYPE     56     41    129     85
D49V6, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          57                            56
  CLUS_2                          57                            41
  CLUS_3                          58                           129
  CLUS_4                          85                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       68     75     32
  DEL PEAK 16(9P24.3) WILD-TYPE     78    114     44
D49V7, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          68                            78
  CLUS_2                          75                           114
  CLUS_3                          32                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED       66     22     18     69
  DEL PEAK 16(9P24.3) WILD-TYPE     77     32     42     85
D49V8, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          66                            77
  CLUS_2                          22                            32
  CLUS_3                          18                            42
  CLUS_4                          69                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       26     57     53
  DEL PEAK 16(9P24.3) WILD-TYPE     53     52     59
D49V9, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          26                            53
  CLUS_2                          57                            52
  CLUS_3                          53                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       60     32     44
  DEL PEAK 16(9P24.3) WILD-TYPE     86     27     51
D49V10, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          60                            86
  CLUS_2                          32                            27
  CLUS_3                          44                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED       36     46     72     42
  DEL PEAK 16(9P24.3) WILD-TYPE     35     89     69     58
D49V11, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          36                            35
  CLUS_2                          46                            89
  CLUS_3                          72                            69
  CLUS_4                          42                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED       37     36     71     52
  DEL PEAK 16(9P24.3) WILD-TYPE     68     35     94     54
D49V12, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          36                            35
  CLUS_3                          71                            94
  CLUS_4                          52                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED        4      5      3      2
  DEL PEAK 16(9P24.3) WILD-TYPE      2      1      2      3
D49V13, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           5                             1
  CLUS_3                           3                             2
  CLUS_4                           2                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P24.3) MUTATED        3      1      2      4      1      3
  DEL PEAK 16(9P24.3) WILD-TYPE      2      1      0      0      4      1
D49V14, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           1                             1
  CLUS_3                           2                             0
  CLUS_4                           4                             0
  CLUS_5                           1                             4
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 17(9Q34.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED      117     61     67     85
  DEL PEAK 17(9Q34.13) WILD-TYPE     59     51     51     66
D50V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          117                             59
  CLUS_2                           61                             51
  CLUS_3                           67                             51
  CLUS_4                           85                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED      185     79     66
  DEL PEAK 17(9Q34.13) WILD-TYPE    125     79     23
D50V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          185                            125
  CLUS_2                           79                             79
  CLUS_3                           66                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED      106     76    147
  DEL PEAK 17(9Q34.13) WILD-TYPE     75     55     96
D50V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          106                             75
  CLUS_2                           76                             55
  CLUS_3                          147                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9Q34.13) MUTATED       45      36     40     44     19     43
  DEL PEAK 17(9Q34.13) WILD-TYPE     40      21     18     38     15     32
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(9Q34.13) MUTATED       23     21     36     22
  DEL PEAK 17(9Q34.13) WILD-TYPE     11     15     16     20
D50V4, multiclass
         clus
vv        DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                            45                             40
  CLUS_10                           36                             21
  CLUS_2                            40                             18
  CLUS_3                            44                             38
  CLUS_4                            19                             15
  CLUS_5                            43                             32
  CLUS_6                            23                             11
  CLUS_7                            21                             15
  CLUS_8                            36                             16
  CLUS_9                            22                             20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED      180     65     97
  DEL PEAK 17(9Q34.13) WILD-TYPE     62     65    110
D50V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          180                             62
  CLUS_2                           65                             65
  CLUS_3                           97                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED       66     62     94    116
  DEL PEAK 17(9Q34.13) WILD-TYPE     47     36     93     54
D50V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           66                             47
  CLUS_2                           62                             36
  CLUS_3                           94                             93
  CLUS_4                          116                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       79    111     43
  DEL PEAK 17(9Q34.13) WILD-TYPE     67     78     33
D50V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           79                             67
  CLUS_2                          111                             78
  CLUS_3                           43                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED       70     34     31     98
  DEL PEAK 17(9Q34.13) WILD-TYPE     73     20     29     56
D50V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           70                             73
  CLUS_2                           34                             20
  CLUS_3                           31                             29
  CLUS_4                           98                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       44     74     64
  DEL PEAK 17(9Q34.13) WILD-TYPE     35     35     48
D50V9, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           44                             35
  CLUS_2                           74                             35
  CLUS_3                           64                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       82     46     54
  DEL PEAK 17(9Q34.13) WILD-TYPE     64     13     41
D50V10, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           82                             64
  CLUS_2                           46                             13
  CLUS_3                           54                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED       39     77     92     62
  DEL PEAK 17(9Q34.13) WILD-TYPE     32     58     49     38
D50V11, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           39                             32
  CLUS_2                           77                             58
  CLUS_3                           92                             49
  CLUS_4                           62                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED       56     51     98     65
  DEL PEAK 17(9Q34.13) WILD-TYPE     49     20     67     41
D50V12, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           56                             49
  CLUS_2                           51                             20
  CLUS_3                           98                             67
  CLUS_4                           65                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED        2      5      2      4
  DEL PEAK 17(9Q34.13) WILD-TYPE      4      1      3      1
D50V13, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            5                              1
  CLUS_3                            2                              3
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.13) MUTATED        2      2      1      3      3      2
  DEL PEAK 17(9Q34.13) WILD-TYPE      3      0      1      1      2      2
D50V14, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            2                              0
  CLUS_3                            1                              1
  CLUS_4                            3                              1
  CLUS_5                            3                              2
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       43     17     32     25
  DEL PEAK 18(10P15.3) WILD-TYPE    133     95     86    126
D51V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           43                            133
  CLUS_2                           17                             95
  CLUS_3                           32                             86
  CLUS_4                           25                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       69     30     18
  DEL PEAK 18(10P15.3) WILD-TYPE    241    128     71
D51V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           69                            241
  CLUS_2                           30                            128
  CLUS_3                           18                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       34     35     47
  DEL PEAK 18(10P15.3) WILD-TYPE    147     96    196
D51V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           34                            147
  CLUS_2                           35                             96
  CLUS_3                           47                            196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10P15.3) MUTATED       15      17     15     11      4     18
  DEL PEAK 18(10P15.3) WILD-TYPE     70      40     43     71     30     57
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(10P15.3) MUTATED        6      9     13      8
  DEL PEAK 18(10P15.3) WILD-TYPE     28     27     39     34
D51V4, multiclass
         clus
vv        DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            15                             70
  CLUS_10                           17                             40
  CLUS_2                            15                             43
  CLUS_3                            11                             71
  CLUS_4                             4                             30
  CLUS_5                            18                             57
  CLUS_6                             6                             28
  CLUS_7                             9                             27
  CLUS_8                            13                             39
  CLUS_9                             8                             34
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       37     34     49
  DEL PEAK 18(10P15.3) WILD-TYPE    205     96    158
D51V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           37                            205
  CLUS_2                           34                             96
  CLUS_3                           49                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       21     24     49     26
  DEL PEAK 18(10P15.3) WILD-TYPE     92     74    138    144
D51V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                             92
  CLUS_2                           24                             74
  CLUS_3                           49                            138
  CLUS_4                           26                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       26     38     20
  DEL PEAK 18(10P15.3) WILD-TYPE    120    151     56
D51V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           26                            120
  CLUS_2                           38                            151
  CLUS_3                           20                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       30     15     11     28
  DEL PEAK 18(10P15.3) WILD-TYPE    113     39     49    126
D51V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           30                            113
  CLUS_2                           15                             39
  CLUS_3                           11                             49
  CLUS_4                           28                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       18     22     22
  DEL PEAK 18(10P15.3) WILD-TYPE     61     87     90
D51V9, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           18                             61
  CLUS_2                           22                             87
  CLUS_3                           22                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       31     12     19
  DEL PEAK 18(10P15.3) WILD-TYPE    115     47     76
D51V10, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           31                            115
  CLUS_2                           12                             47
  CLUS_3                           19                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       11     24     35     18
  DEL PEAK 18(10P15.3) WILD-TYPE     60    111    106     82
D51V11, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           11                             60
  CLUS_2                           24                            111
  CLUS_3                           35                            106
  CLUS_4                           18                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       20     12     28     28
  DEL PEAK 18(10P15.3) WILD-TYPE     85     59    137     78
D51V12, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           20                             85
  CLUS_2                           12                             59
  CLUS_3                           28                            137
  CLUS_4                           28                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED        0      1      2      1
  DEL PEAK 18(10P15.3) WILD-TYPE      6      5      3      4
D51V13, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            1                              5
  CLUS_3                            2                              3
  CLUS_4                            1                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED        0      0      2      1      0      1
  DEL PEAK 18(10P15.3) WILD-TYPE      5      2      0      3      5      3
D51V14, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            0                              2
  CLUS_3                            2                              0
  CLUS_4                            1                              3
  CLUS_5                            0                              5
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 19(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       66     36     44     69
  DEL PEAK 19(10Q23.31) WILD-TYPE    110     76     74     82
D52V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            66                             110
  CLUS_2                            36                              76
  CLUS_3                            44                              74
  CLUS_4                            69                              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED      136     53     26
  DEL PEAK 19(10Q23.31) WILD-TYPE    174    105     63
D52V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                           136                             174
  CLUS_2                            53                             105
  CLUS_3                            26                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       73     32    110
  DEL PEAK 19(10Q23.31) WILD-TYPE    108     99    133
D52V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            73                             108
  CLUS_2                            32                              99
  CLUS_3                           110                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.31) MUTATED       27      21     23     43     15     24
  DEL PEAK 19(10Q23.31) WILD-TYPE     58      36     35     39     19     51
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(10Q23.31) MUTATED       16     18     17     11
  DEL PEAK 19(10Q23.31) WILD-TYPE     18     18     35     31
D52V4, multiclass
         clus
vv        DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             27                              58
  CLUS_10                            21                              36
  CLUS_2                             23                              35
  CLUS_3                             43                              39
  CLUS_4                             15                              19
  CLUS_5                             24                              51
  CLUS_6                             16                              18
  CLUS_7                             18                              18
  CLUS_8                             17                              35
  CLUS_9                             11                              31
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED      112     24     87
  DEL PEAK 19(10Q23.31) WILD-TYPE    130    106    120
D52V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                           112                             130
  CLUS_2                            24                             106
  CLUS_3                            87                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       48     27     70     76
  DEL PEAK 19(10Q23.31) WILD-TYPE     65     71    117     94
D52V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            48                              65
  CLUS_2                            27                              71
  CLUS_3                            70                             117
  CLUS_4                            76                              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       49     75     33
  DEL PEAK 19(10Q23.31) WILD-TYPE     97    114     43
D52V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            49                              97
  CLUS_2                            75                             114
  CLUS_3                            33                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       45     26     24     62
  DEL PEAK 19(10Q23.31) WILD-TYPE     98     28     36     92
D52V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            45                              98
  CLUS_2                            26                              28
  CLUS_3                            24                              36
  CLUS_4                            62                              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       35     44     44
  DEL PEAK 19(10Q23.31) WILD-TYPE     44     65     68
D52V9, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            35                              44
  CLUS_2                            44                              65
  CLUS_3                            44                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       63     26     34
  DEL PEAK 19(10Q23.31) WILD-TYPE     83     33     61
D52V10, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            63                              83
  CLUS_2                            26                              33
  CLUS_3                            34                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       23     60     48     49
  DEL PEAK 19(10Q23.31) WILD-TYPE     48     75     93     51
D52V11, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            23                              48
  CLUS_2                            60                              75
  CLUS_3                            48                              93
  CLUS_4                            49                              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       42     25     75     38
  DEL PEAK 19(10Q23.31) WILD-TYPE     63     46     90     68
D52V12, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            42                              63
  CLUS_2                            25                              46
  CLUS_3                            75                              90
  CLUS_4                            38                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED        4      2      3      3
  DEL PEAK 19(10Q23.31) WILD-TYPE      2      4      2      2
D52V13, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             4                               2
  CLUS_2                             2                               4
  CLUS_3                             3                               2
  CLUS_4                             3                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED        3      0      1      2      4      2
  DEL PEAK 19(10Q23.31) WILD-TYPE      2      2      1      2      1      2
D52V14, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             0                               2
  CLUS_3                             1                               1
  CLUS_4                             2                               2
  CLUS_5                             4                               1
  CLUS_6                             2                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 20(10Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q25.1) MUTATED       74     31     46     79
  DEL PEAK 20(10Q25.1) WILD-TYPE    102     81     72     72
D53V1, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           74                            102
  CLUS_2                           31                             81
  CLUS_3                           46                             72
  CLUS_4                           79                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q25.1) MUTATED      144     58     28
  DEL PEAK 20(10Q25.1) WILD-TYPE    166    100     61
D53V2, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                          144                            166
  CLUS_2                           58                            100
  CLUS_3                           28                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q25.1) MUTATED       80     39    112
  DEL PEAK 20(10Q25.1) WILD-TYPE    101     92    131
D53V3, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           80                            101
  CLUS_2                           39                             92
  CLUS_3                          112                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q25.1) MUTATED       30      24     27     42     15     26
  DEL PEAK 20(10Q25.1) WILD-TYPE     55      33     31     40     19     49
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(10Q25.1) MUTATED       18     21     15     13
  DEL PEAK 20(10Q25.1) WILD-TYPE     16     15     37     29
D53V4, multiclass
         clus
vv        DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                            30                             55
  CLUS_10                           24                             33
  CLUS_2                            27                             31
  CLUS_3                            42                             40
  CLUS_4                            15                             19
  CLUS_5                            26                             49
  CLUS_6                            18                             16
  CLUS_7                            21                             15
  CLUS_8                            15                             37
  CLUS_9                            13                             29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q25.1) MUTATED      110     33     96
  DEL PEAK 20(10Q25.1) WILD-TYPE    132     97    111
D53V5, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                          110                            132
  CLUS_2                           33                             97
  CLUS_3                           96                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q25.1) MUTATED       44     31     82     79
  DEL PEAK 20(10Q25.1) WILD-TYPE     69     67    105     91
D53V6, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           44                             69
  CLUS_2                           31                             67
  CLUS_3                           82                            105
  CLUS_4                           79                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q25.1) MUTATED       52     89     36
  DEL PEAK 20(10Q25.1) WILD-TYPE     94    100     40
D53V7, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           52                             94
  CLUS_2                           89                            100
  CLUS_3                           36                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q25.1) MUTATED       49     29     28     71
  DEL PEAK 20(10Q25.1) WILD-TYPE     94     25     32     83
D53V8, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           49                             94
  CLUS_2                           29                             25
  CLUS_3                           28                             32
  CLUS_4                           71                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q25.1) MUTATED       36     49     46
  DEL PEAK 20(10Q25.1) WILD-TYPE     43     60     66
D53V9, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           36                             43
  CLUS_2                           49                             60
  CLUS_3                           46                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q25.1) MUTATED       65     25     41
  DEL PEAK 20(10Q25.1) WILD-TYPE     81     34     54
D53V10, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           65                             81
  CLUS_2                           25                             34
  CLUS_3                           41                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q25.1) MUTATED       19     67     50     55
  DEL PEAK 20(10Q25.1) WILD-TYPE     52     68     91     45
D53V11, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           19                             52
  CLUS_2                           67                             68
  CLUS_3                           50                             91
  CLUS_4                           55                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q25.1) MUTATED       50     27     73     41
  DEL PEAK 20(10Q25.1) WILD-TYPE     55     44     92     65
D53V12, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                           50                             55
  CLUS_2                           27                             44
  CLUS_3                           73                             92
  CLUS_4                           41                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q25.1) MUTATED        4      3      2      3
  DEL PEAK 20(10Q25.1) WILD-TYPE      2      3      3      2
D53V13, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            3                              3
  CLUS_3                            2                              3
  CLUS_4                            3                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q25.1) MUTATED        3      1      1      2      3      2
  DEL PEAK 20(10Q25.1) WILD-TYPE      2      1      1      2      2      2
D53V14, multiclass
        clus
vv       DEL PEAK 20(10Q25.1) MUTATED DEL PEAK 20(10Q25.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            1                              1
  CLUS_3                            1                              1
  CLUS_4                            2                              2
  CLUS_5                            3                              2
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED      103     64     67     99
  DEL PEAK 21(11P15.5) WILD-TYPE     73     48     51     52
D54V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                          103                             73
  CLUS_2                           64                             48
  CLUS_3                           67                             51
  CLUS_4                           99                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED      184     96     53
  DEL PEAK 21(11P15.5) WILD-TYPE    126     62     36
D54V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                          184                            126
  CLUS_2                           96                             62
  CLUS_3                           53                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED      109     81    143
  DEL PEAK 21(11P15.5) WILD-TYPE     72     50    100
D54V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                          109                             72
  CLUS_2                           81                             50
  CLUS_3                          143                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11P15.5) MUTATED       48      35     29     51     20     41
  DEL PEAK 21(11P15.5) WILD-TYPE     37      22     29     31     14     34
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(11P15.5) MUTATED       17     27     32     33
  DEL PEAK 21(11P15.5) WILD-TYPE     17      9     20      9
D54V4, multiclass
         clus
vv        DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                            48                             37
  CLUS_10                           35                             22
  CLUS_2                            29                             29
  CLUS_3                            51                             31
  CLUS_4                            20                             14
  CLUS_5                            41                             34
  CLUS_6                            17                             17
  CLUS_7                            27                              9
  CLUS_8                            32                             20
  CLUS_9                            33                              9
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED      122     62    162
  DEL PEAK 21(11P15.5) WILD-TYPE    120     68     45
D54V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                          122                            120
  CLUS_2                           62                             68
  CLUS_3                          162                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       70     54    118     95
  DEL PEAK 21(11P15.5) WILD-TYPE     43     44     69     75
D54V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           70                             43
  CLUS_2                           54                             44
  CLUS_3                          118                             69
  CLUS_4                           95                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       89    100     51
  DEL PEAK 21(11P15.5) WILD-TYPE     57     89     25
D54V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           89                             57
  CLUS_2                          100                             89
  CLUS_3                           51                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       84     35     36     85
  DEL PEAK 21(11P15.5) WILD-TYPE     59     19     24     69
D54V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           84                             59
  CLUS_2                           35                             19
  CLUS_3                           36                             24
  CLUS_4                           85                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       48     61     62
  DEL PEAK 21(11P15.5) WILD-TYPE     31     48     50
D54V9, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           48                             31
  CLUS_2                           61                             48
  CLUS_3                           62                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       80     32     59
  DEL PEAK 21(11P15.5) WILD-TYPE     66     27     36
D54V10, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           80                             66
  CLUS_2                           32                             27
  CLUS_3                           59                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       36     87     76     62
  DEL PEAK 21(11P15.5) WILD-TYPE     35     48     65     38
D54V11, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           36                             35
  CLUS_2                           87                             48
  CLUS_3                           76                             65
  CLUS_4                           62                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       76     38     91     56
  DEL PEAK 21(11P15.5) WILD-TYPE     29     33     74     50
D54V12, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           76                             29
  CLUS_2                           38                             33
  CLUS_3                           91                             74
  CLUS_4                           56                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED        1      2      1      4
  DEL PEAK 21(11P15.5) WILD-TYPE      5      4      4      1
D54V13, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              4
  CLUS_3                            1                              4
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED        0      0      1      2      1      4
  DEL PEAK 21(11P15.5) WILD-TYPE      5      2      1      2      4      0
D54V14, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            2                              2
  CLUS_5                            1                              4
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 22(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q25) MUTATED       64     41     31     58
  DEL PEAK 22(11Q25) WILD-TYPE    112     71     87     93
D55V1, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         64                          112
  CLUS_2                         41                           71
  CLUS_3                         31                           87
  CLUS_4                         58                           93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q25) MUTATED      113     53     28
  DEL PEAK 22(11Q25) WILD-TYPE    197    105     61
D55V2, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                        113                          197
  CLUS_2                         53                          105
  CLUS_3                         28                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q25) MUTATED       74     41     77
  DEL PEAK 22(11Q25) WILD-TYPE    107     90    166
D55V3, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         74                          107
  CLUS_2                         41                           90
  CLUS_3                         77                          166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11Q25) MUTATED       36      20     15     21     12     24
  DEL PEAK 22(11Q25) WILD-TYPE     49      37     43     61     22     51
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(11Q25) MUTATED        8     20     21     15
  DEL PEAK 22(11Q25) WILD-TYPE     26     16     31     27
D55V4, multiclass
         clus
vv        DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                          36                           49
  CLUS_10                         20                           37
  CLUS_2                          15                           43
  CLUS_3                          21                           61
  CLUS_4                          12                           22
  CLUS_5                          24                           51
  CLUS_6                           8                           26
  CLUS_7                          20                           16
  CLUS_8                          21                           31
  CLUS_9                          15                           27
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q25) MUTATED      102     36     63
  DEL PEAK 22(11Q25) WILD-TYPE    140     94    144
D55V5, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                        102                          140
  CLUS_2                         36                           94
  CLUS_3                         63                          144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q25) MUTATED       47     36     54     59
  DEL PEAK 22(11Q25) WILD-TYPE     66     62    133    111
D55V6, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         47                           66
  CLUS_2                         36                           62
  CLUS_3                         54                          133
  CLUS_4                         59                          111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q25) MUTATED       47     70     23
  DEL PEAK 22(11Q25) WILD-TYPE     99    119     53
D55V7, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         47                           99
  CLUS_2                         70                          119
  CLUS_3                         23                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q25) MUTATED       47     24     20     49
  DEL PEAK 22(11Q25) WILD-TYPE     96     30     40    105
D55V8, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         47                           96
  CLUS_2                         24                           30
  CLUS_3                         20                           40
  CLUS_4                         49                          105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q25) MUTATED       26     40     38
  DEL PEAK 22(11Q25) WILD-TYPE     53     69     74
D55V9, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         26                           53
  CLUS_2                         40                           69
  CLUS_3                         38                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q25) MUTATED       44     26     34
  DEL PEAK 22(11Q25) WILD-TYPE    102     33     61
D55V10, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         44                          102
  CLUS_2                         26                           33
  CLUS_3                         34                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q25) MUTATED       24     48     46     38
  DEL PEAK 22(11Q25) WILD-TYPE     47     87     95     62
D55V11, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         24                           47
  CLUS_2                         48                           87
  CLUS_3                         46                           95
  CLUS_4                         38                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q25) MUTATED       37     26     64     29
  DEL PEAK 22(11Q25) WILD-TYPE     68     45    101     77
D55V12, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         37                           68
  CLUS_2                         26                           45
  CLUS_3                         64                          101
  CLUS_4                         29                           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q25) MUTATED        3      1      1      2
  DEL PEAK 22(11Q25) WILD-TYPE      3      5      4      3
D55V13, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                          3                            3
  CLUS_2                          1                            5
  CLUS_3                          1                            4
  CLUS_4                          2                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q25) MUTATED        3      1      0      0      2      1
  DEL PEAK 22(11Q25) WILD-TYPE      2      1      2      4      3      3
D55V14, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          1                            1
  CLUS_3                          0                            2
  CLUS_4                          0                            4
  CLUS_5                          2                            3
  CLUS_6                          1                            3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 23(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q23.1) MUTATED       44     46     42     60
  DEL PEAK 23(12Q23.1) WILD-TYPE    132     66     76     91
D56V1, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           44                            132
  CLUS_2                           46                             66
  CLUS_3                           42                             76
  CLUS_4                           60                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q23.1) MUTATED      104     68     20
  DEL PEAK 23(12Q23.1) WILD-TYPE    206     90     69
D56V2, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                          104                            206
  CLUS_2                           68                             90
  CLUS_3                           20                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q23.1) MUTATED       72     52     69
  DEL PEAK 23(12Q23.1) WILD-TYPE    109     79    174
D56V3, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           72                            109
  CLUS_2                           52                             79
  CLUS_3                           69                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(12Q23.1) MUTATED       31      23     15     25     14     29
  DEL PEAK 23(12Q23.1) WILD-TYPE     54      34     43     57     20     46
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(12Q23.1) MUTATED        6     18     13     19
  DEL PEAK 23(12Q23.1) WILD-TYPE     28     18     39     23
D56V4, multiclass
         clus
vv        DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                            31                             54
  CLUS_10                           23                             34
  CLUS_2                            15                             43
  CLUS_3                            25                             57
  CLUS_4                            14                             20
  CLUS_5                            29                             46
  CLUS_6                             6                             28
  CLUS_7                            18                             18
  CLUS_8                            13                             39
  CLUS_9                            19                             23
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q23.1) MUTATED       58     34    106
  DEL PEAK 23(12Q23.1) WILD-TYPE    184     96    101
D56V5, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           58                            184
  CLUS_2                           34                             96
  CLUS_3                          106                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q23.1) MUTATED       39     23     78     55
  DEL PEAK 23(12Q23.1) WILD-TYPE     74     75    109    115
D56V6, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           39                             74
  CLUS_2                           23                             75
  CLUS_3                           78                            109
  CLUS_4                           55                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q23.1) MUTATED       57     51     33
  DEL PEAK 23(12Q23.1) WILD-TYPE     89    138     43
D56V7, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           57                             89
  CLUS_2                           51                            138
  CLUS_3                           33                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q23.1) MUTATED       51     22     19     49
  DEL PEAK 23(12Q23.1) WILD-TYPE     92     32     41    105
D56V8, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           51                             92
  CLUS_2                           22                             32
  CLUS_3                           19                             41
  CLUS_4                           49                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q23.1) MUTATED       25     27     46
  DEL PEAK 23(12Q23.1) WILD-TYPE     54     82     66
D56V9, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           25                             54
  CLUS_2                           27                             82
  CLUS_3                           46                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q23.1) MUTATED       46     10     42
  DEL PEAK 23(12Q23.1) WILD-TYPE    100     49     53
D56V10, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           46                            100
  CLUS_2                           10                             49
  CLUS_3                           42                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q23.1) MUTATED       24     53     37     38
  DEL PEAK 23(12Q23.1) WILD-TYPE     47     82    104     62
D56V11, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           24                             47
  CLUS_2                           53                             82
  CLUS_3                           37                            104
  CLUS_4                           38                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q23.1) MUTATED       43     15     60     34
  DEL PEAK 23(12Q23.1) WILD-TYPE     62     56    105     72
D56V12, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           15                             56
  CLUS_3                           60                            105
  CLUS_4                           34                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q23.1) MUTATED        2      3      2      2
  DEL PEAK 23(12Q23.1) WILD-TYPE      4      3      3      3
D56V13, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            3                              3
  CLUS_3                            2                              3
  CLUS_4                            2                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12Q23.1) MUTATED        1      0      1      3      3      1
  DEL PEAK 23(12Q23.1) WILD-TYPE      4      2      1      1      2      3
D56V14, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            3                              1
  CLUS_5                            3                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 24(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q24.33) MUTATED       47     45     53     67
  DEL PEAK 24(12Q24.33) WILD-TYPE    129     67     65     84
D57V1, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            47                             129
  CLUS_2                            45                              67
  CLUS_3                            53                              65
  CLUS_4                            67                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q24.33) MUTATED      118     68     26
  DEL PEAK 24(12Q24.33) WILD-TYPE    192     90     63
D57V2, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                           118                             192
  CLUS_2                            68                              90
  CLUS_3                            26                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q24.33) MUTATED       72     57     83
  DEL PEAK 24(12Q24.33) WILD-TYPE    109     74    160
D57V3, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            72                             109
  CLUS_2                            57                              74
  CLUS_3                            83                             160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12Q24.33) MUTATED       34      21     19     35     11     34
  DEL PEAK 24(12Q24.33) WILD-TYPE     51      36     39     47     23     41
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(12Q24.33) MUTATED        7     19     11     21
  DEL PEAK 24(12Q24.33) WILD-TYPE     27     17     41     21
D57V4, multiclass
         clus
vv        DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                             34                              51
  CLUS_10                            21                              36
  CLUS_2                             19                              39
  CLUS_3                             35                              47
  CLUS_4                             11                              23
  CLUS_5                             34                              41
  CLUS_6                              7                              27
  CLUS_7                             19                              17
  CLUS_8                             11                              41
  CLUS_9                             21                              21
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q24.33) MUTATED       66     37    117
  DEL PEAK 24(12Q24.33) WILD-TYPE    176     93     90
D57V5, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            66                             176
  CLUS_2                            37                              93
  CLUS_3                           117                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q24.33) MUTATED       43     31     89     54
  DEL PEAK 24(12Q24.33) WILD-TYPE     70     67     98    116
D57V6, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            43                              70
  CLUS_2                            31                              67
  CLUS_3                            89                              98
  CLUS_4                            54                             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q24.33) MUTATED       60     63     34
  DEL PEAK 24(12Q24.33) WILD-TYPE     86    126     42
D57V7, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            60                              86
  CLUS_2                            63                             126
  CLUS_3                            34                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q24.33) MUTATED       55     26     22     54
  DEL PEAK 24(12Q24.33) WILD-TYPE     88     28     38    100
D57V8, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            55                              88
  CLUS_2                            26                              28
  CLUS_3                            22                              38
  CLUS_4                            54                             100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q24.33) MUTATED       33     29     45
  DEL PEAK 24(12Q24.33) WILD-TYPE     46     80     67
D57V9, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            33                              46
  CLUS_2                            29                              80
  CLUS_3                            45                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q24.33) MUTATED       53     13     41
  DEL PEAK 24(12Q24.33) WILD-TYPE     93     46     54
D57V10, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            53                              93
  CLUS_2                            13                              46
  CLUS_3                            41                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q24.33) MUTATED       25     64     40     38
  DEL PEAK 24(12Q24.33) WILD-TYPE     46     71    101     62
D57V11, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            25                              46
  CLUS_2                            64                              71
  CLUS_3                            40                             101
  CLUS_4                            38                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q24.33) MUTATED       54     20     60     33
  DEL PEAK 24(12Q24.33) WILD-TYPE     51     51    105     73
D57V12, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            54                              51
  CLUS_2                            20                              51
  CLUS_3                            60                             105
  CLUS_4                            33                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q24.33) MUTATED        3      1      1      1
  DEL PEAK 24(12Q24.33) WILD-TYPE      3      5      4      4
D57V13, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             1                               5
  CLUS_3                             1                               4
  CLUS_4                             1                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12Q24.33) MUTATED        1      0      1      1      1      2
  DEL PEAK 24(12Q24.33) WILD-TYPE      4      2      1      3      4      2
D57V14, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             0                               2
  CLUS_3                             1                               1
  CLUS_4                             1                               3
  CLUS_5                             1                               4
  CLUS_6                             2                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 25(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q14.2) MUTATED      114     60     68    108
  DEL PEAK 25(13Q14.2) WILD-TYPE     62     52     50     43
D58V1, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          114                             62
  CLUS_2                           60                             52
  CLUS_3                           68                             50
  CLUS_4                          108                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q14.2) MUTATED      211     88     51
  DEL PEAK 25(13Q14.2) WILD-TYPE     99     70     38
D58V2, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          211                             99
  CLUS_2                           88                             70
  CLUS_3                           51                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q14.2) MUTATED      123     82    145
  DEL PEAK 25(13Q14.2) WILD-TYPE     58     49     98
D58V3, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          123                             58
  CLUS_2                           82                             49
  CLUS_3                          145                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(13Q14.2) MUTATED       52      37     42     52     26     37
  DEL PEAK 25(13Q14.2) WILD-TYPE     33      20     16     30      8     38
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(13Q14.2) MUTATED       16     27     32     29
  DEL PEAK 25(13Q14.2) WILD-TYPE     18      9     20     13
D58V4, multiclass
         clus
vv        DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                            52                             33
  CLUS_10                           37                             20
  CLUS_2                            42                             16
  CLUS_3                            52                             30
  CLUS_4                            26                              8
  CLUS_5                            37                             38
  CLUS_6                            16                             18
  CLUS_7                            27                              9
  CLUS_8                            32                             20
  CLUS_9                            29                             13
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q14.2) MUTATED      149     60    155
  DEL PEAK 25(13Q14.2) WILD-TYPE     93     70     52
D58V5, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          149                             93
  CLUS_2                           60                             70
  CLUS_3                          155                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q14.2) MUTATED       76     50    124    108
  DEL PEAK 25(13Q14.2) WILD-TYPE     37     48     63     62
D58V6, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           76                             37
  CLUS_2                           50                             48
  CLUS_3                          124                             63
  CLUS_4                          108                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q14.2) MUTATED       76    135     45
  DEL PEAK 25(13Q14.2) WILD-TYPE     70     54     31
D58V7, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                          135                             54
  CLUS_3                           45                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q14.2) MUTATED       73     32     42    109
  DEL PEAK 25(13Q14.2) WILD-TYPE     70     22     18     45
D58V8, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           73                             70
  CLUS_2                           32                             22
  CLUS_3                           42                             18
  CLUS_4                          109                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q14.2) MUTATED       55     77     60
  DEL PEAK 25(13Q14.2) WILD-TYPE     24     32     52
D58V9, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           55                             24
  CLUS_2                           77                             32
  CLUS_3                           60                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q14.2) MUTATED      101     40     51
  DEL PEAK 25(13Q14.2) WILD-TYPE     45     19     44
D58V10, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          101                             45
  CLUS_2                           40                             19
  CLUS_3                           51                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q14.2) MUTATED       33     86     89     71
  DEL PEAK 25(13Q14.2) WILD-TYPE     38     49     52     29
D58V11, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           33                             38
  CLUS_2                           86                             49
  CLUS_3                           89                             52
  CLUS_4                           71                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q14.2) MUTATED       71     44     95     69
  DEL PEAK 25(13Q14.2) WILD-TYPE     34     27     70     37
D58V12, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           71                             34
  CLUS_2                           44                             27
  CLUS_3                           95                             70
  CLUS_4                           69                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q14.2) MUTATED        2      4      4      4
  DEL PEAK 25(13Q14.2) WILD-TYPE      4      2      1      1
D58V13, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            4                              2
  CLUS_3                            4                              1
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(13Q14.2) MUTATED        2      2      1      2      4      3
  DEL PEAK 25(13Q14.2) WILD-TYPE      3      0      1      2      1      1
D58V14, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            2                              0
  CLUS_3                            1                              1
  CLUS_4                            2                              2
  CLUS_5                            4                              1
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 26(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q23.3) MUTATED       88     54     61     91
  DEL PEAK 26(14Q23.3) WILD-TYPE     88     58     57     60
D59V1, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           88                             88
  CLUS_2                           54                             58
  CLUS_3                           61                             57
  CLUS_4                           91                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q23.3) MUTATED      168     84     42
  DEL PEAK 26(14Q23.3) WILD-TYPE    142     74     47
D59V2, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                          168                            142
  CLUS_2                           84                             74
  CLUS_3                           42                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q23.3) MUTATED      105     68    121
  DEL PEAK 26(14Q23.3) WILD-TYPE     76     63    122
D59V3, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                          105                             76
  CLUS_2                           68                             63
  CLUS_3                          121                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(14Q23.3) MUTATED       46      30     35     46     14     40
  DEL PEAK 26(14Q23.3) WILD-TYPE     39      27     23     36     20     35
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(14Q23.3) MUTATED       18     21     21     23
  DEL PEAK 26(14Q23.3) WILD-TYPE     16     15     31     19
D59V4, multiclass
         clus
vv        DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                            46                             39
  CLUS_10                           30                             27
  CLUS_2                            35                             23
  CLUS_3                            46                             36
  CLUS_4                            14                             20
  CLUS_5                            40                             35
  CLUS_6                            18                             16
  CLUS_7                            21                             15
  CLUS_8                            21                             31
  CLUS_9                            23                             19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q23.3) MUTATED      153     51    101
  DEL PEAK 26(14Q23.3) WILD-TYPE     89     79    106
D59V5, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                          153                             89
  CLUS_2                           51                             79
  CLUS_3                          101                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q23.3) MUTATED       61     47     96     95
  DEL PEAK 26(14Q23.3) WILD-TYPE     52     51     91     75
D59V6, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           61                             52
  CLUS_2                           47                             51
  CLUS_3                           96                             91
  CLUS_4                           95                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q23.3) MUTATED       74    104     38
  DEL PEAK 26(14Q23.3) WILD-TYPE     72     85     38
D59V7, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           74                             72
  CLUS_2                          104                             85
  CLUS_3                           38                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q23.3) MUTATED       68     28     37     83
  DEL PEAK 26(14Q23.3) WILD-TYPE     75     26     23     71
D59V8, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           68                             75
  CLUS_2                           28                             26
  CLUS_3                           37                             23
  CLUS_4                           83                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q23.3) MUTATED       46     51     54
  DEL PEAK 26(14Q23.3) WILD-TYPE     33     58     58
D59V9, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           46                             33
  CLUS_2                           51                             58
  CLUS_3                           54                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q23.3) MUTATED       69     33     49
  DEL PEAK 26(14Q23.3) WILD-TYPE     77     26     46
D59V10, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           69                             77
  CLUS_2                           33                             26
  CLUS_3                           49                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q23.3) MUTATED       33     76     70     55
  DEL PEAK 26(14Q23.3) WILD-TYPE     38     59     71     45
D59V11, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           33                             38
  CLUS_2                           76                             59
  CLUS_3                           70                             71
  CLUS_4                           55                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q23.3) MUTATED       54     34     93     53
  DEL PEAK 26(14Q23.3) WILD-TYPE     51     37     72     53
D59V12, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                           54                             51
  CLUS_2                           34                             37
  CLUS_3                           93                             72
  CLUS_4                           53                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q23.3) MUTATED        3      3      2      5
  DEL PEAK 26(14Q23.3) WILD-TYPE      3      3      3      0
D59V13, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            3                              3
  CLUS_3                            2                              3
  CLUS_4                            5                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(14Q23.3) MUTATED        3      2      0      1      3      4
  DEL PEAK 26(14Q23.3) WILD-TYPE      2      0      2      3      2      0
D59V14, multiclass
        clus
vv       DEL PEAK 26(14Q23.3) MUTATED DEL PEAK 26(14Q23.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            2                              0
  CLUS_3                            0                              2
  CLUS_4                            1                              3
  CLUS_5                            3                              2
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 27(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q11.2) MUTATED      111     53     47     80
  DEL PEAK 27(15Q11.2) WILD-TYPE     65     59     71     71
D60V1, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                          111                             65
  CLUS_2                           53                             59
  CLUS_3                           47                             71
  CLUS_4                           80                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q11.2) MUTATED      164     71     56
  DEL PEAK 27(15Q11.2) WILD-TYPE    146     87     33
D60V2, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                          164                            146
  CLUS_2                           71                             87
  CLUS_3                           56                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q11.2) MUTATED       95     54    141
  DEL PEAK 27(15Q11.2) WILD-TYPE     86     77    102
D60V3, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           95                             86
  CLUS_2                           54                             77
  CLUS_3                          141                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(15Q11.2) MUTATED       36      28     36     40     19     43
  DEL PEAK 27(15Q11.2) WILD-TYPE     49      29     22     42     15     32
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(15Q11.2) MUTATED       23     21     32     12
  DEL PEAK 27(15Q11.2) WILD-TYPE     11     15     20     30
D60V4, multiclass
         clus
vv        DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                            36                             49
  CLUS_10                           28                             29
  CLUS_2                            36                             22
  CLUS_3                            40                             42
  CLUS_4                            19                             15
  CLUS_5                            43                             32
  CLUS_6                            23                             11
  CLUS_7                            21                             15
  CLUS_8                            32                             20
  CLUS_9                            12                             30
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q11.2) MUTATED      184     42     74
  DEL PEAK 27(15Q11.2) WILD-TYPE     58     88    133
D60V5, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                          184                             58
  CLUS_2                           42                             88
  CLUS_3                           74                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q11.2) MUTATED       67     58     64    108
  DEL PEAK 27(15Q11.2) WILD-TYPE     46     40    123     62
D60V6, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           67                             46
  CLUS_2                           58                             40
  CLUS_3                           64                            123
  CLUS_4                          108                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q11.2) MUTATED       69    107     36
  DEL PEAK 27(15Q11.2) WILD-TYPE     77     82     40
D60V7, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           69                             77
  CLUS_2                          107                             82
  CLUS_3                           36                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q11.2) MUTATED       69     28     36     79
  DEL PEAK 27(15Q11.2) WILD-TYPE     74     26     24     75
D60V8, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           69                             74
  CLUS_2                           28                             26
  CLUS_3                           36                             24
  CLUS_4                           79                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q11.2) MUTATED       29     70     54
  DEL PEAK 27(15Q11.2) WILD-TYPE     50     39     58
D60V9, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           29                             50
  CLUS_2                           70                             39
  CLUS_3                           54                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q11.2) MUTATED       73     36     44
  DEL PEAK 27(15Q11.2) WILD-TYPE     73     23     51
D60V10, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           73                             73
  CLUS_2                           36                             23
  CLUS_3                           44                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q11.2) MUTATED       31     78     79     55
  DEL PEAK 27(15Q11.2) WILD-TYPE     40     57     62     45
D60V11, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           31                             40
  CLUS_2                           78                             57
  CLUS_3                           79                             62
  CLUS_4                           55                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q11.2) MUTATED       43     40    102     58
  DEL PEAK 27(15Q11.2) WILD-TYPE     62     31     63     48
D60V12, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           40                             31
  CLUS_3                          102                             63
  CLUS_4                           58                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q11.2) MUTATED        5      4      0      2
  DEL PEAK 27(15Q11.2) WILD-TYPE      1      2      5      3
D60V13, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            4                              2
  CLUS_3                            0                              5
  CLUS_4                            2                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(15Q11.2) MUTATED        3      1      0      3      3      1
  DEL PEAK 27(15Q11.2) WILD-TYPE      2      1      2      1      2      3
D60V14, multiclass
        clus
vv       DEL PEAK 27(15Q11.2) MUTATED DEL PEAK 27(15Q11.2) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            1                              1
  CLUS_3                            0                              2
  CLUS_4                            3                              1
  CLUS_5                            3                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 28(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q15.1) MUTATED      126     68     57    101
  DEL PEAK 28(15Q15.1) WILD-TYPE     50     44     61     50
D61V1, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                          126                             50
  CLUS_2                           68                             44
  CLUS_3                           57                             61
  CLUS_4                          101                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q15.1) MUTATED      198     90     64
  DEL PEAK 28(15Q15.1) WILD-TYPE    112     68     25
D61V2, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                          198                            112
  CLUS_2                           90                             68
  CLUS_3                           64                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q15.1) MUTATED      115     72    164
  DEL PEAK 28(15Q15.1) WILD-TYPE     66     59     79
D61V3, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                          115                             66
  CLUS_2                           72                             59
  CLUS_3                          164                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(15Q15.1) MUTATED       43      32     42     51     23     52
  DEL PEAK 28(15Q15.1) WILD-TYPE     42      25     16     31     11     23
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(15Q15.1) MUTATED       23     26     41     18
  DEL PEAK 28(15Q15.1) WILD-TYPE     11     10     11     24
D61V4, multiclass
         clus
vv        DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                            43                             42
  CLUS_10                           32                             25
  CLUS_2                            42                             16
  CLUS_3                            51                             31
  CLUS_4                            23                             11
  CLUS_5                            52                             23
  CLUS_6                            23                             11
  CLUS_7                            26                             10
  CLUS_8                            41                             11
  CLUS_9                            18                             24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q15.1) MUTATED      201     48    114
  DEL PEAK 28(15Q15.1) WILD-TYPE     41     82     93
D61V5, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                          201                             41
  CLUS_2                           48                             82
  CLUS_3                          114                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q15.1) MUTATED       77     67     89    127
  DEL PEAK 28(15Q15.1) WILD-TYPE     36     31     98     43
D61V6, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                           77                             36
  CLUS_2                           67                             31
  CLUS_3                           89                             98
  CLUS_4                          127                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q15.1) MUTATED       81    129     48
  DEL PEAK 28(15Q15.1) WILD-TYPE     65     60     28
D61V7, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                           81                             65
  CLUS_2                          129                             60
  CLUS_3                           48                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q15.1) MUTATED       80     37     40    101
  DEL PEAK 28(15Q15.1) WILD-TYPE     63     17     20     53
D61V8, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                           80                             63
  CLUS_2                           37                             17
  CLUS_3                           40                             20
  CLUS_4                          101                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q15.1) MUTATED       42     79     70
  DEL PEAK 28(15Q15.1) WILD-TYPE     37     30     42
D61V9, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                           42                             37
  CLUS_2                           79                             30
  CLUS_3                           70                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q15.1) MUTATED       92     42     57
  DEL PEAK 28(15Q15.1) WILD-TYPE     54     17     38
D61V10, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                           92                             54
  CLUS_2                           42                             17
  CLUS_3                           57                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q15.1) MUTATED       39     95     88     69
  DEL PEAK 28(15Q15.1) WILD-TYPE     32     40     53     31
D61V11, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                           39                             32
  CLUS_2                           95                             40
  CLUS_3                           88                             53
  CLUS_4                           69                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q15.1) MUTATED       58     48    124     61
  DEL PEAK 28(15Q15.1) WILD-TYPE     47     23     41     45
D61V12, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                           58                             47
  CLUS_2                           48                             23
  CLUS_3                          124                             41
  CLUS_4                           61                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q15.1) MUTATED        4      5      2      3
  DEL PEAK 28(15Q15.1) WILD-TYPE      2      1      3      2
D61V13, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            5                              1
  CLUS_3                            2                              3
  CLUS_4                            3                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(15Q15.1) MUTATED        4      2      0      3      4      1
  DEL PEAK 28(15Q15.1) WILD-TYPE      1      0      2      1      1      3
D61V14, multiclass
        clus
vv       DEL PEAK 28(15Q15.1) MUTATED DEL PEAK 28(15Q15.1) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            2                              0
  CLUS_3                            0                              2
  CLUS_4                            3                              1
  CLUS_5                            4                              1
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 29(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       95     62     55     88
  DEL PEAK 29(16P13.3) WILD-TYPE     81     50     63     63
D62V1, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           95                             81
  CLUS_2                           62                             50
  CLUS_3                           55                             63
  CLUS_4                           88                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED      174     88     38
  DEL PEAK 29(16P13.3) WILD-TYPE    136     70     51
D62V2, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                          174                            136
  CLUS_2                           88                             70
  CLUS_3                           38                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED      109     61    129
  DEL PEAK 29(16P13.3) WILD-TYPE     72     70    114
D62V3, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                          109                             72
  CLUS_2                           61                             70
  CLUS_3                          129                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16P13.3) MUTATED       42      29     25     45     21     43
  DEL PEAK 29(16P13.3) WILD-TYPE     43      28     33     37     13     32
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(16P13.3) MUTATED       21     29     25     19
  DEL PEAK 29(16P13.3) WILD-TYPE     13      7     27     23
D62V4, multiclass
         clus
vv        DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                            42                             43
  CLUS_10                           29                             28
  CLUS_2                            25                             33
  CLUS_3                            45                             37
  CLUS_4                            21                             13
  CLUS_5                            43                             32
  CLUS_6                            21                             13
  CLUS_7                            29                              7
  CLUS_8                            25                             27
  CLUS_9                            19                             23
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED      145     55    113
  DEL PEAK 29(16P13.3) WILD-TYPE     97     75     94
D62V5, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                          145                             97
  CLUS_2                           55                             75
  CLUS_3                          113                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       63     53     91    100
  DEL PEAK 29(16P13.3) WILD-TYPE     50     45     96     70
D62V6, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           63                             50
  CLUS_2                           53                             45
  CLUS_3                           91                             96
  CLUS_4                          100                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED       85    104     31
  DEL PEAK 29(16P13.3) WILD-TYPE     61     85     45
D62V7, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           85                             61
  CLUS_2                          104                             85
  CLUS_3                           31                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       76     32     27     85
  DEL PEAK 29(16P13.3) WILD-TYPE     67     22     33     69
D62V8, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           76                             67
  CLUS_2                           32                             22
  CLUS_3                           27                             33
  CLUS_4                           85                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED       43     60     64
  DEL PEAK 29(16P13.3) WILD-TYPE     36     49     48
D62V9, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           43                             36
  CLUS_2                           60                             49
  CLUS_3                           64                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED       82     33     52
  DEL PEAK 29(16P13.3) WILD-TYPE     64     26     43
D62V10, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           82                             64
  CLUS_2                           33                             26
  CLUS_3                           52                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       33     81     71     56
  DEL PEAK 29(16P13.3) WILD-TYPE     38     54     70     44
D62V11, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           33                             38
  CLUS_2                           81                             54
  CLUS_3                           71                             70
  CLUS_4                           56                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       61     33     91     56
  DEL PEAK 29(16P13.3) WILD-TYPE     44     38     74     50
D62V12, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           61                             44
  CLUS_2                           33                             38
  CLUS_3                           91                             74
  CLUS_4                           56                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED        3      4      3      4
  DEL PEAK 29(16P13.3) WILD-TYPE      3      2      2      1
D62V13, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            4                              2
  CLUS_3                            3                              2
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16P13.3) MUTATED        2      2      1      2      3      4
  DEL PEAK 29(16P13.3) WILD-TYPE      3      0      1      2      2      0
D62V14, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            2                              0
  CLUS_3                            1                              1
  CLUS_4                            2                              2
  CLUS_5                            3                              2
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 30(16Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q22.1) MUTATED      140     91     88    123
  DEL PEAK 30(16Q22.1) WILD-TYPE     36     21     30     28
D63V1, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                          140                             36
  CLUS_2                           91                             21
  CLUS_3                           88                             30
  CLUS_4                          123                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q22.1) MUTATED      249    125     68
  DEL PEAK 30(16Q22.1) WILD-TYPE     61     33     21
D63V2, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                          249                             61
  CLUS_2                          125                             33
  CLUS_3                           68                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q22.1) MUTATED      147     94    201
  DEL PEAK 30(16Q22.1) WILD-TYPE     34     37     42
D63V3, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                          147                             34
  CLUS_2                           94                             37
  CLUS_3                          201                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q22.1) MUTATED       68      43     42     71     25     57
  DEL PEAK 30(16Q22.1) WILD-TYPE     17      14     16     11      9     18
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(16Q22.1) MUTATED       28     32     43     33
  DEL PEAK 30(16Q22.1) WILD-TYPE      6      4      9      9
D63V4, multiclass
         clus
vv        DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                            68                             17
  CLUS_10                           43                             14
  CLUS_2                            42                             16
  CLUS_3                            71                             11
  CLUS_4                            25                              9
  CLUS_5                            57                             18
  CLUS_6                            28                              6
  CLUS_7                            32                              4
  CLUS_8                            43                              9
  CLUS_9                            33                              9
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q22.1) MUTATED      205     87    169
  DEL PEAK 30(16Q22.1) WILD-TYPE     37     43     38
D63V5, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                          205                             37
  CLUS_2                           87                             43
  CLUS_3                          169                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q22.1) MUTATED       99     79    132    142
  DEL PEAK 30(16Q22.1) WILD-TYPE     14     19     55     28
D63V6, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                           99                             14
  CLUS_2                           79                             19
  CLUS_3                          132                             55
  CLUS_4                          142                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q22.1) MUTATED      110    154     58
  DEL PEAK 30(16Q22.1) WILD-TYPE     36     35     18
D63V7, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                          110                             36
  CLUS_2                          154                             35
  CLUS_3                           58                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q22.1) MUTATED      108     45     54    115
  DEL PEAK 30(16Q22.1) WILD-TYPE     35      9      6     39
D63V8, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                          108                             35
  CLUS_2                           45                              9
  CLUS_3                           54                              6
  CLUS_4                          115                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q22.1) MUTATED       60     86     94
  DEL PEAK 30(16Q22.1) WILD-TYPE     19     23     18
D63V9, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                           60                             19
  CLUS_2                           86                             23
  CLUS_3                           94                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q22.1) MUTATED      115     48     77
  DEL PEAK 30(16Q22.1) WILD-TYPE     31     11     18
D63V10, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                          115                             31
  CLUS_2                           48                             11
  CLUS_3                           77                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q22.1) MUTATED       55    112    107     88
  DEL PEAK 30(16Q22.1) WILD-TYPE     16     23     34     12
D63V11, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                           55                             16
  CLUS_2                          112                             23
  CLUS_3                          107                             34
  CLUS_4                           88                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q22.1) MUTATED       89     50    140     83
  DEL PEAK 30(16Q22.1) WILD-TYPE     16     21     25     23
D63V12, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                           89                             16
  CLUS_2                           50                             21
  CLUS_3                          140                             25
  CLUS_4                           83                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q22.1) MUTATED        4      6      4      5
  DEL PEAK 30(16Q22.1) WILD-TYPE      2      0      1      0
D63V13, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            6                              0
  CLUS_3                            4                              1
  CLUS_4                            5                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q22.1) MUTATED        4      2      2      4      3      4
  DEL PEAK 30(16Q22.1) WILD-TYPE      1      0      0      0      2      0
D63V14, multiclass
        clus
vv       DEL PEAK 30(16Q22.1) MUTATED DEL PEAK 30(16Q22.1) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            2                              0
  CLUS_3                            2                              0
  CLUS_4                            4                              0
  CLUS_5                            3                              2
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 31(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED      140     95     84    115
  DEL PEAK 31(16Q23.1) WILD-TYPE     36     17     34     36
D64V1, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          140                             36
  CLUS_2                           95                             17
  CLUS_3                           84                             34
  CLUS_4                          115                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED      238    130     66
  DEL PEAK 31(16Q23.1) WILD-TYPE     72     28     23
D64V2, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          238                             72
  CLUS_2                          130                             28
  CLUS_3                           66                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED      148     94    193
  DEL PEAK 31(16Q23.1) WILD-TYPE     33     37     50
D64V3, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          148                             33
  CLUS_2                           94                             37
  CLUS_3                          193                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(16Q23.1) MUTATED       69      39     40     68     32     59
  DEL PEAK 31(16Q23.1) WILD-TYPE     16      18     18     14      2     16
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(16Q23.1) MUTATED       24     29     44     31
  DEL PEAK 31(16Q23.1) WILD-TYPE     10      7      8     11
D64V4, multiclass
         clus
vv        DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                            69                             16
  CLUS_10                           39                             18
  CLUS_2                            40                             18
  CLUS_3                            68                             14
  CLUS_4                            32                              2
  CLUS_5                            59                             16
  CLUS_6                            24                             10
  CLUS_7                            29                              7
  CLUS_8                            44                              8
  CLUS_9                            31                             11
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED      205     81    166
  DEL PEAK 31(16Q23.1) WILD-TYPE     37     49     41
D64V5, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          205                             37
  CLUS_2                           81                             49
  CLUS_3                          166                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED      103     77    125    138
  DEL PEAK 31(16Q23.1) WILD-TYPE     10     21     62     32
D64V6, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          103                             10
  CLUS_2                           77                             21
  CLUS_3                          125                             62
  CLUS_4                          138                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED      111    151     56
  DEL PEAK 31(16Q23.1) WILD-TYPE     35     38     20
D64V7, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          111                             35
  CLUS_2                          151                             38
  CLUS_3                           56                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED      112     41     51    114
  DEL PEAK 31(16Q23.1) WILD-TYPE     31     13      9     40
D64V8, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          112                             31
  CLUS_2                           41                             13
  CLUS_3                           51                              9
  CLUS_4                          114                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED       59     85     96
  DEL PEAK 31(16Q23.1) WILD-TYPE     20     24     16
D64V9, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           59                             20
  CLUS_2                           85                             24
  CLUS_3                           96                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(16Q23.1) MUTATED      112     49     79
  DEL PEAK 31(16Q23.1) WILD-TYPE     34     10     16
D64V10, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                          112                             34
  CLUS_2                           49                             10
  CLUS_3                           79                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED       57    113    104     83
  DEL PEAK 31(16Q23.1) WILD-TYPE     14     22     37     17
D64V11, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           57                             14
  CLUS_2                          113                             22
  CLUS_3                          104                             37
  CLUS_4                           83                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED       87     51    140     79
  DEL PEAK 31(16Q23.1) WILD-TYPE     18     20     25     27
D64V12, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                           87                             18
  CLUS_2                           51                             20
  CLUS_3                          140                             25
  CLUS_4                           79                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(16Q23.1) MUTATED        4      4      5      5
  DEL PEAK 31(16Q23.1) WILD-TYPE      2      2      0      0
D64V13, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            4                              2
  CLUS_3                            5                              0
  CLUS_4                            5                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(16Q23.1) MUTATED        4      1      2      3      4      4
  DEL PEAK 31(16Q23.1) WILD-TYPE      1      1      0      1      1      0
D64V14, multiclass
        clus
vv       DEL PEAK 31(16Q23.1) MUTATED DEL PEAK 31(16Q23.1) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            1                              1
  CLUS_3                            2                              0
  CLUS_4                            3                              1
  CLUS_5                            4                              1
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 32(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P12) MUTATED      143     95    101    133
  DEL PEAK 32(17P12) WILD-TYPE     33     17     17     18
D65V1, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                        143                           33
  CLUS_2                         95                           17
  CLUS_3                        101                           17
  CLUS_4                        133                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P12) MUTATED      264    137     71
  DEL PEAK 32(17P12) WILD-TYPE     46     21     18
D65V2, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                        264                           46
  CLUS_2                        137                           21
  CLUS_3                         71                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P12) MUTATED      158    109    205
  DEL PEAK 32(17P12) WILD-TYPE     23     22     38
D65V3, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                        158                           23
  CLUS_2                        109                           22
  CLUS_3                        205                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17P12) MUTATED       74      50     49     69     29     66
  DEL PEAK 32(17P12) WILD-TYPE     11       7      9     13      5      9
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(17P12) MUTATED       30     31     38     36
  DEL PEAK 32(17P12) WILD-TYPE      4      5     14      6
D65V4, multiclass
         clus
vv        DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                          74                           11
  CLUS_10                         50                            7
  CLUS_2                          49                            9
  CLUS_3                          69                           13
  CLUS_4                          29                            5
  CLUS_5                          66                            9
  CLUS_6                          30                            4
  CLUS_7                          31                            5
  CLUS_8                          38                           14
  CLUS_9                          36                            6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P12) MUTATED      201    108    182
  DEL PEAK 32(17P12) WILD-TYPE     41     22     25
D65V5, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                        201                           41
  CLUS_2                        108                           22
  CLUS_3                        182                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P12) MUTATED       96     79    162    145
  DEL PEAK 32(17P12) WILD-TYPE     17     19     25     25
D65V6, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                         96                           17
  CLUS_2                         79                           19
  CLUS_3                        162                           25
  CLUS_4                        145                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P12) MUTATED      121    156     65
  DEL PEAK 32(17P12) WILD-TYPE     25     33     11
D65V7, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                        121                           25
  CLUS_2                        156                           33
  CLUS_3                         65                           11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P12) MUTATED      116     48     50    128
  DEL PEAK 32(17P12) WILD-TYPE     27      6     10     26
D65V8, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                        116                           27
  CLUS_2                         48                            6
  CLUS_3                         50                           10
  CLUS_4                        128                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P12) MUTATED       70     90     98
  DEL PEAK 32(17P12) WILD-TYPE      9     19     14
D65V9, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                         70                            9
  CLUS_2                         90                           19
  CLUS_3                         98                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17P12) MUTATED      126     48     84
  DEL PEAK 32(17P12) WILD-TYPE     20     11     11
D65V10, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                        126                           20
  CLUS_2                         48                           11
  CLUS_3                         84                           11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P12) MUTATED       60    120    119     88
  DEL PEAK 32(17P12) WILD-TYPE     11     15     22     12
D65V11, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                         60                           11
  CLUS_2                        120                           15
  CLUS_3                        119                           22
  CLUS_4                         88                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P12) MUTATED       97     59    141     90
  DEL PEAK 32(17P12) WILD-TYPE      8     12     24     16
D65V12, multiclass
        clus
vv       DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE
  CLUS_1                         97                            8
  CLUS_2                         59                           12
  CLUS_3                        141                           24
  CLUS_4                         90                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17P12) MUTATED        5      6      4      5
  DEL PEAK 32(17P12) WILD-TYPE      1      0      1      0
D65V13, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 32(17P12) WILD-TYPE"
clus
  DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE 
                          20                            2 
                TCGA-04-1652                 TCGA-09-2050 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-09-2054                 TCGA-13-0908 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-23-2077                 TCGA-24-1928 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-24-2036                 TCGA-24-2288 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-24-2290                 TCGA-24-2297 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-25-2392                 TCGA-25-2399 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-25-2400                 TCGA-25-2404 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-59-2363                 TCGA-61-1918 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-61-2088                 TCGA-61-2098 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-61-2109                 TCGA-61-2111 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17P12) MUTATED        4      2      2      4      4      4
  DEL PEAK 32(17P12) WILD-TYPE      1      0      0      0      1      0
D65V14, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 32(17P12) WILD-TYPE"
clus
  DEL PEAK 32(17P12) MUTATED DEL PEAK 32(17P12) WILD-TYPE 
                          20                            2 
                TCGA-04-1652                 TCGA-09-2050 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-09-2054                 TCGA-13-0908 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-23-2077                 TCGA-24-1928 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-24-2036                 TCGA-24-2288 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-24-2290                 TCGA-24-2297 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-25-2392                 TCGA-25-2399 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-25-2400                 TCGA-25-2404 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-59-2363                 TCGA-61-1918 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-61-2088                 TCGA-61-2098 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 
                TCGA-61-2109                 TCGA-61-2111 
"DEL PEAK 32(17P12) MUTATED" "DEL PEAK 32(17P12) MUTATED" 

Clustering(66) Variable = DEL PEAK 33(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED      137     94    100    124
  DEL PEAK 33(17Q11.2) WILD-TYPE     39     18     18     27
D66V1, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                          137                             39
  CLUS_2                           94                             18
  CLUS_3                          100                             18
  CLUS_4                          124                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED      252    135     68
  DEL PEAK 33(17Q11.2) WILD-TYPE     58     23     21
D66V2, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                          252                             58
  CLUS_2                          135                             23
  CLUS_3                           68                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED      148    105    202
  DEL PEAK 33(17Q11.2) WILD-TYPE     33     26     41
D66V3, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                          148                             33
  CLUS_2                          105                             26
  CLUS_3                          202                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17Q11.2) MUTATED       68      46     50     71     25     64
  DEL PEAK 33(17Q11.2) WILD-TYPE     17      11      8     11      9     11
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(17Q11.2) MUTATED       29     31     35     36
  DEL PEAK 33(17Q11.2) WILD-TYPE      5      5     17      6
D66V4, multiclass
         clus
vv        DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                            68                             17
  CLUS_10                           46                             11
  CLUS_2                            50                              8
  CLUS_3                            71                             11
  CLUS_4                            25                              9
  CLUS_5                            64                             11
  CLUS_6                            29                              5
  CLUS_7                            31                              5
  CLUS_8                            35                             17
  CLUS_9                            36                              6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED      188    103    181
  DEL PEAK 33(17Q11.2) WILD-TYPE     54     27     26
D66V5, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                          188                             54
  CLUS_2                          103                             27
  CLUS_3                          181                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED       91     76    160    138
  DEL PEAK 33(17Q11.2) WILD-TYPE     22     22     27     32
D66V6, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           91                             22
  CLUS_2                           76                             22
  CLUS_3                          160                             27
  CLUS_4                          138                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED      118    153     58
  DEL PEAK 33(17Q11.2) WILD-TYPE     28     36     18
D66V7, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                          118                             28
  CLUS_2                          153                             36
  CLUS_3                           58                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED      115     43     44    127
  DEL PEAK 33(17Q11.2) WILD-TYPE     28     11     16     27
D66V8, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                          115                             28
  CLUS_2                           43                             11
  CLUS_3                           44                             16
  CLUS_4                          127                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED       65     87     96
  DEL PEAK 33(17Q11.2) WILD-TYPE     14     22     16
D66V9, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           65                             14
  CLUS_2                           87                             22
  CLUS_3                           96                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17Q11.2) MUTATED      118     48     82
  DEL PEAK 33(17Q11.2) WILD-TYPE     28     11     13
D66V10, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                          118                             28
  CLUS_2                           48                             11
  CLUS_3                           82                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED       56    120    114     85
  DEL PEAK 33(17Q11.2) WILD-TYPE     15     15     27     15
D66V11, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           56                             15
  CLUS_2                          120                             15
  CLUS_3                          114                             27
  CLUS_4                           85                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED       95     57    137     86
  DEL PEAK 33(17Q11.2) WILD-TYPE     10     14     28     20
D66V12, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                           95                             10
  CLUS_2                           57                             14
  CLUS_3                          137                             28
  CLUS_4                           86                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(17Q11.2) MUTATED        5      5      5      4
  DEL PEAK 33(17Q11.2) WILD-TYPE      1      1      0      1
D66V13, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            5                              1
  CLUS_3                            5                              0
  CLUS_4                            4                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17Q11.2) MUTATED        4      2      2      3      5      3
  DEL PEAK 33(17Q11.2) WILD-TYPE      1      0      0      1      0      1
D66V14, multiclass
        clus
vv       DEL PEAK 33(17Q11.2) MUTATED DEL PEAK 33(17Q11.2) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            2                              0
  CLUS_3                            2                              0
  CLUS_4                            3                              1
  CLUS_5                            5                              0
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 34(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(18Q23) MUTATED      121     73     80     92
  DEL PEAK 34(18Q23) WILD-TYPE     55     39     38     59
D67V1, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                        121                           55
  CLUS_2                         73                           39
  CLUS_3                         80                           38
  CLUS_4                         92                           59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED      205    101     60
  DEL PEAK 34(18Q23) WILD-TYPE    105     57     29
D67V2, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                        205                          105
  CLUS_2                        101                           57
  CLUS_3                         60                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED      124     88    154
  DEL PEAK 34(18Q23) WILD-TYPE     57     43     89
D67V3, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                        124                           57
  CLUS_2                         88                           43
  CLUS_3                        154                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(18Q23) MUTATED       61      39     34     52     22     49
  DEL PEAK 34(18Q23) WILD-TYPE     24      18     24     30     12     26
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(18Q23) MUTATED       22     24     35     28
  DEL PEAK 34(18Q23) WILD-TYPE     12     12     17     14
D67V4, multiclass
         clus
vv        DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                          61                           24
  CLUS_10                         39                           18
  CLUS_2                          34                           24
  CLUS_3                          52                           30
  CLUS_4                          22                           12
  CLUS_5                          49                           26
  CLUS_6                          22                           12
  CLUS_7                          24                           12
  CLUS_8                          35                           17
  CLUS_9                          28                           14
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED      147     78    156
  DEL PEAK 34(18Q23) WILD-TYPE     95     52     51
D67V5, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                        147                           95
  CLUS_2                         78                           52
  CLUS_3                        156                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(18Q23) MUTATED       81     64    125    106
  DEL PEAK 34(18Q23) WILD-TYPE     32     34     62     64
D67V6, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         81                           32
  CLUS_2                         64                           34
  CLUS_3                        125                           62
  CLUS_4                        106                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       85    125     52
  DEL PEAK 34(18Q23) WILD-TYPE     61     64     24
D67V7, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         85                           61
  CLUS_2                        125                           64
  CLUS_3                         52                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(18Q23) MUTATED       85     39     42     96
  DEL PEAK 34(18Q23) WILD-TYPE     58     15     18     58
D67V8, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         85                           58
  CLUS_2                         39                           15
  CLUS_3                         42                           18
  CLUS_4                         96                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       49     74     73
  DEL PEAK 34(18Q23) WILD-TYPE     30     35     39
D67V9, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         49                           30
  CLUS_2                         74                           35
  CLUS_3                         73                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(18Q23) MUTATED       86     45     65
  DEL PEAK 34(18Q23) WILD-TYPE     60     14     30
D67V10, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         86                           60
  CLUS_2                         45                           14
  CLUS_3                         65                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(18Q23) MUTATED       44     95     91     66
  DEL PEAK 34(18Q23) WILD-TYPE     27     40     50     34
D67V11, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         44                           27
  CLUS_2                         95                           40
  CLUS_3                         91                           50
  CLUS_4                         66                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(18Q23) MUTATED       75     47    109     65
  DEL PEAK 34(18Q23) WILD-TYPE     30     24     56     41
D67V12, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                         75                           30
  CLUS_2                         47                           24
  CLUS_3                        109                           56
  CLUS_4                         65                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(18Q23) MUTATED        3      4      5      4
  DEL PEAK 34(18Q23) WILD-TYPE      3      2      0      1
D67V13, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                          3                            3
  CLUS_2                          4                            2
  CLUS_3                          5                            0
  CLUS_4                          4                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(18Q23) MUTATED        3      2      2      2      4      3
  DEL PEAK 34(18Q23) WILD-TYPE      2      0      0      2      1      1
D67V14, multiclass
        clus
vv       DEL PEAK 34(18Q23) MUTATED DEL PEAK 34(18Q23) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          2                            0
  CLUS_3                          2                            0
  CLUS_4                          2                            2
  CLUS_5                          4                            1
  CLUS_6                          3                            1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 35(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19P13.3) MUTATED      164    100    100    127
  DEL PEAK 35(19P13.3) WILD-TYPE     12     12     18     24
D68V1, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          164                             12
  CLUS_2                          100                             12
  CLUS_3                          100                             18
  CLUS_4                          127                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19P13.3) MUTATED      272    135     84
  DEL PEAK 35(19P13.3) WILD-TYPE     38     23      5
D68V2, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          272                             38
  CLUS_2                          135                             23
  CLUS_3                           84                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19P13.3) MUTATED      159    115    216
  DEL PEAK 35(19P13.3) WILD-TYPE     22     16     27
D68V3, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          159                             22
  CLUS_2                          115                             16
  CLUS_3                          216                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19P13.3) MUTATED       72      50     52     69     33     66
  DEL PEAK 35(19P13.3) WILD-TYPE     13       7      6     13      1      9
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 35(19P13.3) MUTATED       32     30     47     39
  DEL PEAK 35(19P13.3) WILD-TYPE      2      6      5      3
D68V4, multiclass
         clus
vv        DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                            72                             13
  CLUS_10                           50                              7
  CLUS_2                            52                              6
  CLUS_3                            69                             13
  CLUS_4                            33                              1
  CLUS_5                            66                              9
  CLUS_6                            32                              2
  CLUS_7                            30                              6
  CLUS_8                            47                              5
  CLUS_9                            39                              3
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19P13.3) MUTATED      227    104    181
  DEL PEAK 35(19P13.3) WILD-TYPE     15     26     26
D68V5, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          227                             15
  CLUS_2                          104                             26
  CLUS_3                          181                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19P13.3) MUTATED      104     91    152    154
  DEL PEAK 35(19P13.3) WILD-TYPE      9      7     35     16
D68V6, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          104                              9
  CLUS_2                           91                              7
  CLUS_3                          152                             35
  CLUS_4                          154                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19P13.3) MUTATED      129    175     59
  DEL PEAK 35(19P13.3) WILD-TYPE     17     14     17
D68V7, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          129                             17
  CLUS_2                          175                             14
  CLUS_3                           59                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19P13.3) MUTATED      121     51     56    135
  DEL PEAK 35(19P13.3) WILD-TYPE     22      3      4     19
D68V8, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          121                             22
  CLUS_2                           51                              3
  CLUS_3                           56                              4
  CLUS_4                          135                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19P13.3) MUTATED       69     99    100
  DEL PEAK 35(19P13.3) WILD-TYPE     10     10     12
D68V9, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                           69                             10
  CLUS_2                           99                             10
  CLUS_3                          100                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19P13.3) MUTATED      125     57     86
  DEL PEAK 35(19P13.3) WILD-TYPE     21      2      9
D68V10, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                          125                             21
  CLUS_2                           57                              2
  CLUS_3                           86                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19P13.3) MUTATED       59    124    129     90
  DEL PEAK 35(19P13.3) WILD-TYPE     12     11     12     10
D68V11, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                           59                             12
  CLUS_2                          124                             11
  CLUS_3                          129                             12
  CLUS_4                           90                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19P13.3) MUTATED       93     62    150     97
  DEL PEAK 35(19P13.3) WILD-TYPE     12      9     15      9
D68V12, multiclass
        clus
vv       DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE
  CLUS_1                           93                             12
  CLUS_2                           62                              9
  CLUS_3                          150                             15
  CLUS_4                           97                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19P13.3) MUTATED        5      6      5      5
  DEL PEAK 35(19P13.3) WILD-TYPE      1      0      0      0
D68V13, multiclass
[1] "Remove cluster labels:"         "DEL PEAK 35(19P13.3) WILD-TYPE"
clus
  DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE 
                            21                              1 
                  TCGA-04-1652                   TCGA-09-2050 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-09-2054                   TCGA-13-0908 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-23-2077                   TCGA-24-1928 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-24-2036                   TCGA-24-2288 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-24-2289                   TCGA-24-2290 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-24-2297                   TCGA-25-2392 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-25-2399                   TCGA-25-2400 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-25-2404                   TCGA-57-1994 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-59-2363                   TCGA-61-2088 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-61-2098                   TCGA-61-2109 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-61-2111 
"DEL PEAK 35(19P13.3) MUTATED" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19P13.3) MUTATED        4      2      2      4      5      4
  DEL PEAK 35(19P13.3) WILD-TYPE      1      0      0      0      0      0
D68V14, multiclass
[1] "Remove cluster labels:"         "DEL PEAK 35(19P13.3) WILD-TYPE"
clus
  DEL PEAK 35(19P13.3) MUTATED DEL PEAK 35(19P13.3) WILD-TYPE 
                            21                              1 
                  TCGA-04-1652                   TCGA-09-2050 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-09-2054                   TCGA-13-0908 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-23-2077                   TCGA-24-1928 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-24-2036                   TCGA-24-2288 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-24-2289                   TCGA-24-2290 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-24-2297                   TCGA-25-2392 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-25-2399                   TCGA-25-2400 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-25-2404                   TCGA-57-1994 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-59-2363                   TCGA-61-2088 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-61-2098                   TCGA-61-2109 
"DEL PEAK 35(19P13.3) MUTATED" "DEL PEAK 35(19P13.3) MUTATED" 
                  TCGA-61-2111 
"DEL PEAK 35(19P13.3) MUTATED" 

Clustering(69) Variable = DEL PEAK 36(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(19Q13.33) MUTATED      102     39     69     80
  DEL PEAK 36(19Q13.33) WILD-TYPE     74     73     49     71
D69V1, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                           102                              74
  CLUS_2                            39                              73
  CLUS_3                            69                              49
  CLUS_4                            80                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19Q13.33) MUTATED      178     64     48
  DEL PEAK 36(19Q13.33) WILD-TYPE    132     94     41
D69V2, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                           178                             132
  CLUS_2                            64                              94
  CLUS_3                            48                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19Q13.33) MUTATED       93     59    137
  DEL PEAK 36(19Q13.33) WILD-TYPE     88     72    106
D69V3, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            93                              88
  CLUS_2                            59                              72
  CLUS_3                           137                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19Q13.33) MUTATED       44      35     36     50     10     32
  DEL PEAK 36(19Q13.33) WILD-TYPE     41      22     22     32     24     43
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(19Q13.33) MUTATED       18     16     23     25
  DEL PEAK 36(19Q13.33) WILD-TYPE     16     20     29     17
D69V4, multiclass
         clus
vv        DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                             44                              41
  CLUS_10                            35                              22
  CLUS_2                             36                              22
  CLUS_3                             50                              32
  CLUS_4                             10                              24
  CLUS_5                             32                              43
  CLUS_6                             18                              16
  CLUS_7                             16                              20
  CLUS_8                             23                              29
  CLUS_9                             25                              17
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19Q13.33) MUTATED      139     64     96
  DEL PEAK 36(19Q13.33) WILD-TYPE    103     66    111
D69V5, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                           139                             103
  CLUS_2                            64                              66
  CLUS_3                            96                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(19Q13.33) MUTATED       57     51     83    103
  DEL PEAK 36(19Q13.33) WILD-TYPE     56     47    104     67
D69V6, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            57                              56
  CLUS_2                            51                              47
  CLUS_3                            83                             104
  CLUS_4                           103                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19Q13.33) MUTATED       63     93     45
  DEL PEAK 36(19Q13.33) WILD-TYPE     83     96     31
D69V7, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            63                              83
  CLUS_2                            93                              96
  CLUS_3                            45                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(19Q13.33) MUTATED       59     33     35     74
  DEL PEAK 36(19Q13.33) WILD-TYPE     84     21     25     80
D69V8, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            59                              84
  CLUS_2                            33                              21
  CLUS_3                            35                              25
  CLUS_4                            74                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19Q13.33) MUTATED       39     63     43
  DEL PEAK 36(19Q13.33) WILD-TYPE     40     46     69
D69V9, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            39                              40
  CLUS_2                            63                              46
  CLUS_3                            43                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19Q13.33) MUTATED       71     37     37
  DEL PEAK 36(19Q13.33) WILD-TYPE     75     22     58
D69V10, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            71                              75
  CLUS_2                            37                              22
  CLUS_3                            37                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(19Q13.33) MUTATED       32     69     77     52
  DEL PEAK 36(19Q13.33) WILD-TYPE     39     66     64     48
D69V11, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            32                              39
  CLUS_2                            69                              66
  CLUS_3                            77                              64
  CLUS_4                            52                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(19Q13.33) MUTATED       44     36     93     57
  DEL PEAK 36(19Q13.33) WILD-TYPE     61     35     72     49
D69V12, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                            44                              61
  CLUS_2                            36                              35
  CLUS_3                            93                              72
  CLUS_4                            57                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(19Q13.33) MUTATED        3      4      2      3
  DEL PEAK 36(19Q13.33) WILD-TYPE      3      2      3      2
D69V13, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             4                               2
  CLUS_3                             2                               3
  CLUS_4                             3                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19Q13.33) MUTATED        3      2      2      2      0      3
  DEL PEAK 36(19Q13.33) WILD-TYPE      2      0      0      2      5      1
D69V14, multiclass
        clus
vv       DEL PEAK 36(19Q13.33) MUTATED DEL PEAK 36(19Q13.33) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             2                               0
  CLUS_3                             2                               0
  CLUS_4                             2                               2
  CLUS_5                             0                               5
  CLUS_6                             3                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 37(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19Q13.43) MUTATED       95     41     62     78
  DEL PEAK 37(19Q13.43) WILD-TYPE     81     71     56     73
D70V1, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            95                              81
  CLUS_2                            41                              71
  CLUS_3                            62                              56
  CLUS_4                            78                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.43) MUTATED      157     68     51
  DEL PEAK 37(19Q13.43) WILD-TYPE    153     90     38
D70V2, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                           157                             153
  CLUS_2                            68                              90
  CLUS_3                            51                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.43) MUTATED       86     63    126
  DEL PEAK 37(19Q13.43) WILD-TYPE     95     68    117
D70V3, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            86                              95
  CLUS_2                            63                              68
  CLUS_3                           126                             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.43) MUTATED       41      32     30     41     10     35
  DEL PEAK 37(19Q13.43) WILD-TYPE     44      25     28     41     24     40
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(19Q13.43) MUTATED       21     17     25     23
  DEL PEAK 37(19Q13.43) WILD-TYPE     13     19     27     19
D70V4, multiclass
         clus
vv        DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                             41                              44
  CLUS_10                            32                              25
  CLUS_2                             30                              28
  CLUS_3                             41                              41
  CLUS_4                             10                              24
  CLUS_5                             35                              40
  CLUS_6                             21                              13
  CLUS_7                             17                              19
  CLUS_8                             25                              27
  CLUS_9                             23                              19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.43) MUTATED      136     64     85
  DEL PEAK 37(19Q13.43) WILD-TYPE    106     66    122
D70V5, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                           136                             106
  CLUS_2                            64                              66
  CLUS_3                            85                             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19Q13.43) MUTATED       49     50     83     98
  DEL PEAK 37(19Q13.43) WILD-TYPE     64     48    104     72
D70V6, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            49                              64
  CLUS_2                            50                              48
  CLUS_3                            83                             104
  CLUS_4                            98                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.43) MUTATED       60     90     41
  DEL PEAK 37(19Q13.43) WILD-TYPE     86     99     35
D70V7, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            60                              86
  CLUS_2                            90                              99
  CLUS_3                            41                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19Q13.43) MUTATED       61     30     30     70
  DEL PEAK 37(19Q13.43) WILD-TYPE     82     24     30     84
D70V8, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            61                              82
  CLUS_2                            30                              24
  CLUS_3                            30                              30
  CLUS_4                            70                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.43) MUTATED       36     55     49
  DEL PEAK 37(19Q13.43) WILD-TYPE     43     54     63
D70V9, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            36                              43
  CLUS_2                            55                              54
  CLUS_3                            49                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.43) MUTATED       60     35     45
  DEL PEAK 37(19Q13.43) WILD-TYPE     86     24     50
D70V10, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            60                              86
  CLUS_2                            35                              24
  CLUS_3                            45                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19Q13.43) MUTATED       34     63     71     47
  DEL PEAK 37(19Q13.43) WILD-TYPE     37     72     70     53
D70V11, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            34                              37
  CLUS_2                            63                              72
  CLUS_3                            71                              70
  CLUS_4                            47                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19Q13.43) MUTATED       41     38     87     49
  DEL PEAK 37(19Q13.43) WILD-TYPE     64     33     78     57
D70V12, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            41                              64
  CLUS_2                            38                              33
  CLUS_3                            87                              78
  CLUS_4                            49                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(19Q13.43) MUTATED        2      2      2      4
  DEL PEAK 37(19Q13.43) WILD-TYPE      4      4      3      1
D70V13, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             2                               4
  CLUS_3                             2                               3
  CLUS_4                             4                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.43) MUTATED        2      2      2      0      1      3
  DEL PEAK 37(19Q13.43) WILD-TYPE      3      0      0      4      4      1
D70V14, multiclass
        clus
vv       DEL PEAK 37(19Q13.43) MUTATED DEL PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             2                               0
  CLUS_3                             2                               0
  CLUS_4                             0                               4
  CLUS_5                             1                               4
  CLUS_6                             3                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 38(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(21Q22.3) MUTATED       78     44     45     54
  DEL PEAK 38(21Q22.3) WILD-TYPE     98     68     73     97
D71V1, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           78                             98
  CLUS_2                           44                             68
  CLUS_3                           45                             73
  CLUS_4                           54                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(21Q22.3) MUTATED      117     58     46
  DEL PEAK 38(21Q22.3) WILD-TYPE    193    100     43
D71V2, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                          117                            193
  CLUS_2                           58                            100
  CLUS_3                           46                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(21Q22.3) MUTATED       69     52    100
  DEL PEAK 38(21Q22.3) WILD-TYPE    112     79    143
D71V3, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           69                            112
  CLUS_2                           52                             79
  CLUS_3                          100                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(21Q22.3) MUTATED       31      19     25     29      9     29
  DEL PEAK 38(21Q22.3) WILD-TYPE     54      38     33     53     25     46
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(21Q22.3) MUTATED       15     18     29     17
  DEL PEAK 38(21Q22.3) WILD-TYPE     19     18     23     25
D71V4, multiclass
         clus
vv        DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                            31                             54
  CLUS_10                           19                             38
  CLUS_2                            25                             33
  CLUS_3                            29                             53
  CLUS_4                             9                             25
  CLUS_5                            29                             46
  CLUS_6                            15                             19
  CLUS_7                            18                             18
  CLUS_8                            29                             23
  CLUS_9                            17                             25
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(21Q22.3) MUTATED      107     48     72
  DEL PEAK 38(21Q22.3) WILD-TYPE    135     82    135
D71V5, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                          107                            135
  CLUS_2                           48                             82
  CLUS_3                           72                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(21Q22.3) MUTATED       43     39     67     74
  DEL PEAK 38(21Q22.3) WILD-TYPE     70     59    120     96
D71V6, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           43                             70
  CLUS_2                           39                             59
  CLUS_3                           67                            120
  CLUS_4                           74                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(21Q22.3) MUTATED       58     66     30
  DEL PEAK 38(21Q22.3) WILD-TYPE     88    123     46
D71V7, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           58                             88
  CLUS_2                           66                            123
  CLUS_3                           30                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(21Q22.3) MUTATED       59     17     23     55
  DEL PEAK 38(21Q22.3) WILD-TYPE     84     37     37     99
D71V8, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           59                             84
  CLUS_2                           17                             37
  CLUS_3                           23                             37
  CLUS_4                           55                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(21Q22.3) MUTATED       25     40     43
  DEL PEAK 38(21Q22.3) WILD-TYPE     54     69     69
D71V9, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           25                             54
  CLUS_2                           40                             69
  CLUS_3                           43                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(21Q22.3) MUTATED       49     25     34
  DEL PEAK 38(21Q22.3) WILD-TYPE     97     34     61
D71V10, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           49                             97
  CLUS_2                           25                             34
  CLUS_3                           34                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(21Q22.3) MUTATED       23     54     51     46
  DEL PEAK 38(21Q22.3) WILD-TYPE     48     81     90     54
D71V11, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           23                             48
  CLUS_2                           54                             81
  CLUS_3                           51                             90
  CLUS_4                           46                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(21Q22.3) MUTATED       38     25     69     42
  DEL PEAK 38(21Q22.3) WILD-TYPE     67     46     96     64
D71V12, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                           38                             67
  CLUS_2                           25                             46
  CLUS_3                           69                             96
  CLUS_4                           42                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(21Q22.3) MUTATED        4      1      0      1
  DEL PEAK 38(21Q22.3) WILD-TYPE      2      5      5      4
D71V13, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            1                              5
  CLUS_3                            0                              5
  CLUS_4                            1                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(21Q22.3) MUTATED        3      1      0      0      2      0
  DEL PEAK 38(21Q22.3) WILD-TYPE      2      1      2      4      3      4
D71V14, multiclass
        clus
vv       DEL PEAK 38(21Q22.3) MUTATED DEL PEAK 38(21Q22.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            1                              1
  CLUS_3                            0                              2
  CLUS_4                            0                              4
  CLUS_5                            2                              3
  CLUS_6                            0                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 39(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.32) MUTATED      164     94     98    128
  DEL PEAK 39(22Q13.32) WILD-TYPE     12     18     20     23
D72V1, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           164                              12
  CLUS_2                            94                              18
  CLUS_3                            98                              20
  CLUS_4                           128                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.32) MUTATED      267    134     83
  DEL PEAK 39(22Q13.32) WILD-TYPE     43     24      6
D72V2, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           267                              43
  CLUS_2                           134                              24
  CLUS_3                            83                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.32) MUTATED      158    103    222
  DEL PEAK 39(22Q13.32) WILD-TYPE     23     28     21
D72V3, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           158                              23
  CLUS_2                           103                              28
  CLUS_3                           222                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(22Q13.32) MUTATED       71      49     49     74     31     60
  DEL PEAK 39(22Q13.32) WILD-TYPE     14       8      9      8      3     15
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 39(22Q13.32) MUTATED       31     32     50     36
  DEL PEAK 39(22Q13.32) WILD-TYPE      3      4      2      6
D72V4, multiclass
         clus
vv        DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                             71                              14
  CLUS_10                            49                               8
  CLUS_2                             49                               9
  CLUS_3                             74                               8
  CLUS_4                             31                               3
  CLUS_5                             60                              15
  CLUS_6                             31                               3
  CLUS_7                             32                               4
  CLUS_8                             50                               2
  CLUS_9                             36                               6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.32) MUTATED      222     98    184
  DEL PEAK 39(22Q13.32) WILD-TYPE     20     32     23
D72V5, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           222                              20
  CLUS_2                            98                              32
  CLUS_3                           184                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.32) MUTATED      101     91    149    153
  DEL PEAK 39(22Q13.32) WILD-TYPE     12      7     38     17
D72V6, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           101                              12
  CLUS_2                            91                               7
  CLUS_3                           149                              38
  CLUS_4                           153                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.32) MUTATED      124    172     60
  DEL PEAK 39(22Q13.32) WILD-TYPE     22     17     16
D72V7, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           124                              22
  CLUS_2                           172                              17
  CLUS_3                            60                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.32) MUTATED      115     46     53    142
  DEL PEAK 39(22Q13.32) WILD-TYPE     28      8      7     12
D72V8, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           115                              28
  CLUS_2                            46                               8
  CLUS_3                            53                               7
  CLUS_4                           142                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.32) MUTATED       65    100     95
  DEL PEAK 39(22Q13.32) WILD-TYPE     14      9     17
D72V9, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                            65                              14
  CLUS_2                           100                               9
  CLUS_3                            95                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.32) MUTATED      122     57     81
  DEL PEAK 39(22Q13.32) WILD-TYPE     24      2     14
D72V10, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                           122                              24
  CLUS_2                            57                               2
  CLUS_3                            81                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.32) MUTATED       54    120    126     90
  DEL PEAK 39(22Q13.32) WILD-TYPE     17     15     15     10
D72V11, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                            54                              17
  CLUS_2                           120                              15
  CLUS_3                           126                              15
  CLUS_4                            90                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.32) MUTATED       88     64    146     92
  DEL PEAK 39(22Q13.32) WILD-TYPE     17      7     19     14
D72V12, multiclass
        clus
vv       DEL PEAK 39(22Q13.32) MUTATED DEL PEAK 39(22Q13.32) WILD-TYPE
  CLUS_1                            88                              17
  CLUS_2                            64                               7
  CLUS_3                           146                              19
  CLUS_4                            92                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.32) MUTATED        6      6      5      5
  DEL PEAK 39(22Q13.32) WILD-TYPE      0      0      0      0
D72V13, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(22Q13.32) MUTATED        5      2      2      4      5      4
  DEL PEAK 39(22Q13.32) WILD-TYPE      0      0      0      0      0      0
D72V14, multiclass

Clustering(73) Variable = DEL PEAK 40(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XP21.1) MUTATED      104     64     74    102
  DEL PEAK 40(XP21.1) WILD-TYPE     72     48     44     49
D73V1, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                         104                            72
  CLUS_2                          64                            48
  CLUS_3                          74                            44
  CLUS_4                         102                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XP21.1) MUTATED      198     93     53
  DEL PEAK 40(XP21.1) WILD-TYPE    112     65     36
D73V2, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                         198                           112
  CLUS_2                          93                            65
  CLUS_3                          53                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XP21.1) MUTATED      107     78    159
  DEL PEAK 40(XP21.1) WILD-TYPE     74     53     84
D73V3, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                         107                            74
  CLUS_2                          78                            53
  CLUS_3                         159                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(XP21.1) MUTATED       49      33     34     53     20     53
  DEL PEAK 40(XP21.1) WILD-TYPE     36      24     24     29     14     22
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(XP21.1) MUTATED       21     22     30     29
  DEL PEAK 40(XP21.1) WILD-TYPE     13     14     22     13
D73V4, multiclass
         clus
vv        DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                           49                            36
  CLUS_10                          33                            24
  CLUS_2                           34                            24
  CLUS_3                           53                            29
  CLUS_4                           20                            14
  CLUS_5                           53                            22
  CLUS_6                           21                            13
  CLUS_7                           22                            14
  CLUS_8                           30                            22
  CLUS_9                           29                            13
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XP21.1) MUTATED      142     78    138
  DEL PEAK 40(XP21.1) WILD-TYPE    100     52     69
D73V5, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                         142                           100
  CLUS_2                          78                            52
  CLUS_3                         138                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XP21.1) MUTATED       59     61    126    107
  DEL PEAK 40(XP21.1) WILD-TYPE     54     37     61     63
D73V6, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                          59                            54
  CLUS_2                          61                            37
  CLUS_3                         126                            61
  CLUS_4                         107                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XP21.1) MUTATED       86    121     47
  DEL PEAK 40(XP21.1) WILD-TYPE     60     68     29
D73V7, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                          86                            60
  CLUS_2                         121                            68
  CLUS_3                          47                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XP21.1) MUTATED       76     38     40    100
  DEL PEAK 40(XP21.1) WILD-TYPE     67     16     20     54
D73V8, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                          76                            67
  CLUS_2                          38                            16
  CLUS_3                          40                            20
  CLUS_4                         100                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XP21.1) MUTATED       48     62     72
  DEL PEAK 40(XP21.1) WILD-TYPE     31     47     40
D73V9, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                          48                            31
  CLUS_2                          62                            47
  CLUS_3                          72                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XP21.1) MUTATED       85     35     62
  DEL PEAK 40(XP21.1) WILD-TYPE     61     24     33
D73V10, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                          85                            61
  CLUS_2                          35                            24
  CLUS_3                          62                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XP21.1) MUTATED       38     83     87     74
  DEL PEAK 40(XP21.1) WILD-TYPE     33     52     54     26
D73V11, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                          38                            33
  CLUS_2                          83                            52
  CLUS_3                          87                            54
  CLUS_4                          74                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XP21.1) MUTATED       71     42    105     64
  DEL PEAK 40(XP21.1) WILD-TYPE     34     29     60     42
D73V12, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                          71                            34
  CLUS_2                          42                            29
  CLUS_3                         105                            60
  CLUS_4                          64                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XP21.1) MUTATED        4      6      4      4
  DEL PEAK 40(XP21.1) WILD-TYPE      2      0      1      1
D73V13, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           6                             0
  CLUS_3                           4                             1
  CLUS_4                           4                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XP21.1) MUTATED        3      2      2      4      4      3
  DEL PEAK 40(XP21.1) WILD-TYPE      2      0      0      0      1      1
D73V14, multiclass
        clus
vv       DEL PEAK 40(XP21.1) MUTATED DEL PEAK 40(XP21.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           2                             0
  CLUS_3                           2                             0
  CLUS_4                           4                             0
  CLUS_5                           4                             1
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
