[1] "ofn"        "-oTPAAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/22541963/PAAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/22595605/transformed.cor.cli.txt"

nPatients in clinical file=185, in cluster file=126, common to both=126
[1] "Reduce the number of clustering variables from 697 to 658."
[1] 658 126
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
           100             26 
  KRAS MUTATED KRAS WILD-TYPE 
           100             26 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            81             45 
  TP53 MUTATED TP53 WILD-TYPE 
            81             45 
[1] "MAMLD1 MUTATION ANALYSIS"
[1] 3
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
              28               98 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
              28               98 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              27               99 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              27               99 
[1] "CD99L2 MUTATION ANALYSIS"
[1] 3
  CD99L2 MUTATED CD99L2 WILD-TYPE 
              20              106 
  CD99L2 MUTATED CD99L2 WILD-TYPE 
              20              106 
[1] "IPP MUTATION ANALYSIS"
[1] 3
  IPP MUTATED IPP WILD-TYPE 
           20           106 
  IPP MUTATED IPP WILD-TYPE 
           20           106 
[1] "IRS1 MUTATION ANALYSIS"
[1] 3
  IRS1 MUTATED IRS1 WILD-TYPE 
            20            106 
  IRS1 MUTATED IRS1 WILD-TYPE 
            20            106 
[1] "C19ORF55 MUTATION ANALYSIS"
[1] 3
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                16                110 
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                16                110 
[1] "C15ORF24 MUTATION ANALYSIS"
[1] 3
  C15ORF24 MUTATED C15ORF24 WILD-TYPE 
                15                111 
  C15ORF24 MUTATED C15ORF24 WILD-TYPE 
                15                111 
[1] "QRICH1 MUTATION ANALYSIS"
[1] 3
  QRICH1 MUTATED QRICH1 WILD-TYPE 
              14              112 
  QRICH1 MUTATED QRICH1 WILD-TYPE 
              14              112 
[1] "IFT46 MUTATION ANALYSIS"
[1] 3
  IFT46 MUTATED IFT46 WILD-TYPE 
             13             113 
  IFT46 MUTATED IFT46 WILD-TYPE 
             13             113 
[1] "ARHGAP18 MUTATION ANALYSIS"
[1] 3
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                12                114 
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                12                114 
[1] "EME2 MUTATION ANALYSIS"
[1] 3
  EME2 MUTATED EME2 WILD-TYPE 
            11            115 
  EME2 MUTATED EME2 WILD-TYPE 
            11            115 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             100 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             100 
[1] "NPNT MUTATION ANALYSIS"
[1] 3
  NPNT MUTATED NPNT WILD-TYPE 
            12            114 
  NPNT MUTATED NPNT WILD-TYPE 
            12            114 
[1] "TNFSF9 MUTATION ANALYSIS"
[1] 3
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
              12              114 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
              12              114 
[1] "SRP14 MUTATION ANALYSIS"
[1] 3
  SRP14 MUTATED SRP14 WILD-TYPE 
              9             117 
  SRP14 MUTATED SRP14 WILD-TYPE 
              9             117 
[1] "SORBS2 MUTATION ANALYSIS"
[1] 3
  SORBS2 MUTATED SORBS2 WILD-TYPE 
              17              109 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
              17              109 
[1] "ERF MUTATION ANALYSIS"
[1] 3
  ERF MUTATED ERF WILD-TYPE 
           13           113 
  ERF MUTATED ERF WILD-TYPE 
           13           113 
[1] "MED9 MUTATION ANALYSIS"
[1] 3
  MED9 MUTATED MED9 WILD-TYPE 
             7            119 
  MED9 MUTATED MED9 WILD-TYPE 
             7            119 
[1] "BHLHB9 MUTATION ANALYSIS"
[1] 3
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
              12              114 
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
              12              114 
[1] "ZNF185 MUTATION ANALYSIS"
[1] 3
  ZNF185 MUTATED ZNF185 WILD-TYPE 
              10              116 
  ZNF185 MUTATED ZNF185 WILD-TYPE 
              10              116 
[1] "IRX4 MUTATION ANALYSIS"
[1] 3
  IRX4 MUTATED IRX4 WILD-TYPE 
            10            116 
  IRX4 MUTATED IRX4 WILD-TYPE 
            10            116 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             13             113 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             13             113 
[1] "EDC4 MUTATION ANALYSIS"
[1] 3
  EDC4 MUTATED EDC4 WILD-TYPE 
            16            110 
  EDC4 MUTATED EDC4 WILD-TYPE 
            16            110 
[1] "CCDC135 MUTATION ANALYSIS"
[1] 3
  CCDC135 MUTATED CCDC135 WILD-TYPE 
               13               113 
  CCDC135 MUTATED CCDC135 WILD-TYPE 
               13               113 
[1] "APP MUTATION ANALYSIS"
[1] 3
  APP MUTATED APP WILD-TYPE 
           12           114 
  APP MUTATED APP WILD-TYPE 
           12           114 
[1] "TMC4 MUTATION ANALYSIS"
[1] 3
  TMC4 MUTATED TMC4 WILD-TYPE 
            20            106 
  TMC4 MUTATED TMC4 WILD-TYPE 
            20            106 
[1] "PHF13 MUTATION ANALYSIS"
[1] 3
  PHF13 MUTATED PHF13 WILD-TYPE 
              9             117 
  PHF13 MUTATED PHF13 WILD-TYPE 
              9             117 
[1] "B4GALT2 MUTATION ANALYSIS"
[1] 3
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
               10               116 
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
               10               116 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               6              120 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               6              120 
[1] "YIPF2 MUTATION ANALYSIS"
[1] 3
  YIPF2 MUTATED YIPF2 WILD-TYPE 
             11             115 
  YIPF2 MUTATED YIPF2 WILD-TYPE 
             11             115 
[1] "MED15 MUTATION ANALYSIS"
[1] 3
  MED15 MUTATED MED15 WILD-TYPE 
             12             114 
  MED15 MUTATED MED15 WILD-TYPE 
             12             114 
[1] "MBD3 MUTATION ANALYSIS"
[1] 3
  MBD3 MUTATED MBD3 WILD-TYPE 
             9            117 
  MBD3 MUTATED MBD3 WILD-TYPE 
             9            117 
[1] "WWTR1 MUTATION ANALYSIS"
[1] 3
  WWTR1 MUTATED WWTR1 WILD-TYPE 
             12             114 
  WWTR1 MUTATED WWTR1 WILD-TYPE 
             12             114 
[1] "FAM63B MUTATION ANALYSIS"
[1] 3
  FAM63B MUTATED FAM63B WILD-TYPE 
              11              115 
  FAM63B MUTATED FAM63B WILD-TYPE 
              11              115 
[1] "C14ORF43 MUTATION ANALYSIS"
[1] 3
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                13                113 
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                13                113 
[1] "ERCC3 MUTATION ANALYSIS"
[1] 3
  ERCC3 MUTATED ERCC3 WILD-TYPE 
              9             117 
  ERCC3 MUTATED ERCC3 WILD-TYPE 
              9             117 
[1] "MYH10 MUTATION ANALYSIS"
[1] 3
  MYH10 MUTATED MYH10 WILD-TYPE 
             14             112 
  MYH10 MUTATED MYH10 WILD-TYPE 
             14             112 
[1] "ZMYM5 MUTATION ANALYSIS"
[1] 3
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
             13             113 
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
             13             113 
[1] "CDCA8 MUTATION ANALYSIS"
[1] 3
  CDCA8 MUTATED CDCA8 WILD-TYPE 
              9             117 
  CDCA8 MUTATED CDCA8 WILD-TYPE 
              9             117 
[1] "PAK1 MUTATION ANALYSIS"
[1] 3
  PAK1 MUTATED PAK1 WILD-TYPE 
            11            115 
  PAK1 MUTATED PAK1 WILD-TYPE 
            11            115 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
           15           111 
  WRN MUTATED WRN WILD-TYPE 
           15           111 
[1] "CLOCK MUTATION ANALYSIS"
[1] 3
  CLOCK MUTATED CLOCK WILD-TYPE 
             12             114 
  CLOCK MUTATED CLOCK WILD-TYPE 
             12             114 
[1] "TMEM175 MUTATION ANALYSIS"
[1] 3
  TMEM175 MUTATED TMEM175 WILD-TYPE 
               13               113 
  TMEM175 MUTATED TMEM175 WILD-TYPE 
               13               113 
[1] "THBS4 MUTATION ANALYSIS"
[1] 3
  THBS4 MUTATED THBS4 WILD-TYPE 
             16             110 
  THBS4 MUTATED THBS4 WILD-TYPE 
             16             110 
[1] "TMED10 MUTATION ANALYSIS"
[1] 3
  TMED10 MUTATED TMED10 WILD-TYPE 
               8              118 
  TMED10 MUTATED TMED10 WILD-TYPE 
               8              118 
[1] "NFIL3 MUTATION ANALYSIS"
[1] 3
  NFIL3 MUTATED NFIL3 WILD-TYPE 
             10             116 
  NFIL3 MUTATED NFIL3 WILD-TYPE 
             10             116 
[1] "RGPD5 MUTATION ANALYSIS"
[1] 3
  RGPD5 MUTATED RGPD5 WILD-TYPE 
              6             120 
  RGPD5 MUTATED RGPD5 WILD-TYPE 
              6             120 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             8            118 
  EMG1 MUTATED EMG1 WILD-TYPE 
             8            118 
[1] "MED12 MUTATION ANALYSIS"
[1] 3
  MED12 MUTATED MED12 WILD-TYPE 
             13             113 
  MED12 MUTATED MED12 WILD-TYPE 
             13             113 
[1] "SYT15 MUTATION ANALYSIS"
[1] 3
  SYT15 MUTATED SYT15 WILD-TYPE 
             11             115 
  SYT15 MUTATED SYT15 WILD-TYPE 
             11             115 
[1] "OTUD4 MUTATION ANALYSIS"
[1] 3
  OTUD4 MUTATED OTUD4 WILD-TYPE 
             18             108 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
             18             108 
[1] "KIAA1949 MUTATION ANALYSIS"
[1] 3
  KIAA1949 MUTATED KIAA1949 WILD-TYPE 
                10                116 
  KIAA1949 MUTATED KIAA1949 WILD-TYPE 
                10                116 
[1] "OR10A7 MUTATION ANALYSIS"
[1] 3
  OR10A7 MUTATED OR10A7 WILD-TYPE 
              12              114 
  OR10A7 MUTATED OR10A7 WILD-TYPE 
              12              114 
[1] "SYNGAP1 MUTATION ANALYSIS"
[1] 3
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
               15               111 
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
               15               111 
[1] "TOX4 MUTATION ANALYSIS"
[1] 3
  TOX4 MUTATED TOX4 WILD-TYPE 
             9            117 
  TOX4 MUTATED TOX4 WILD-TYPE 
             9            117 
[1] "CUL4B MUTATION ANALYSIS"
[1] 3
  CUL4B MUTATED CUL4B WILD-TYPE 
             13             113 
  CUL4B MUTATED CUL4B WILD-TYPE 
             13             113 
[1] "NFAT5 MUTATION ANALYSIS"
[1] 3
  NFAT5 MUTATED NFAT5 WILD-TYPE 
             13             113 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
             13             113 
[1] "OTOF MUTATION ANALYSIS"
[1] 3
  OTOF MUTATED OTOF WILD-TYPE 
            18            108 
  OTOF MUTATED OTOF WILD-TYPE 
            18            108 
[1] "SMG7 MUTATION ANALYSIS"
[1] 3
  SMG7 MUTATED SMG7 WILD-TYPE 
            10            116 
  SMG7 MUTATED SMG7 WILD-TYPE 
            10            116 
[1] "SLC6A9 MUTATION ANALYSIS"
[1] 3
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
              10              116 
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
              10              116 
[1] "INTS7 MUTATION ANALYSIS"
[1] 3
  INTS7 MUTATED INTS7 WILD-TYPE 
              9             117 
  INTS7 MUTATED INTS7 WILD-TYPE 
              9             117 
[1] "PASD1 MUTATION ANALYSIS"
[1] 3
  PASD1 MUTATED PASD1 WILD-TYPE 
             12             114 
  PASD1 MUTATED PASD1 WILD-TYPE 
             12             114 
[1] "BRDT MUTATION ANALYSIS"
[1] 3
  BRDT MUTATED BRDT WILD-TYPE 
            11            115 
  BRDT MUTATED BRDT WILD-TYPE 
            11            115 
[1] "CDH3 MUTATION ANALYSIS"
[1] 3
  CDH3 MUTATED CDH3 WILD-TYPE 
             7            119 
  CDH3 MUTATED CDH3 WILD-TYPE 
             7            119 
[1] "CTAGE5 MUTATION ANALYSIS"
[1] 3
  CTAGE5 MUTATED CTAGE5 WILD-TYPE 
               8              118 
  CTAGE5 MUTATED CTAGE5 WILD-TYPE 
               8              118 
[1] "C6ORF165 MUTATION ANALYSIS"
[1] 3
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                 9                117 
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                 9                117 
[1] "POP5 MUTATION ANALYSIS"
[1] 3
  POP5 MUTATED POP5 WILD-TYPE 
             6            120 
  POP5 MUTATED POP5 WILD-TYPE 
             6            120 
[1] "CEL MUTATION ANALYSIS"
[1] 3
  CEL MUTATED CEL WILD-TYPE 
            7           119 
  CEL MUTATED CEL WILD-TYPE 
            7           119 
[1] "EIF3C MUTATION ANALYSIS"
[1] 3
  EIF3C MUTATED EIF3C WILD-TYPE 
              9             117 
  EIF3C MUTATED EIF3C WILD-TYPE 
              9             117 
[1] "NR4A3 MUTATION ANALYSIS"
[1] 3
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              7             119 
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              7             119 
[1] "DPYS MUTATION ANALYSIS"
[1] 3
  DPYS MUTATED DPYS WILD-TYPE 
            11            115 
  DPYS MUTATED DPYS WILD-TYPE 
            11            115 
[1] "LRIG1 MUTATION ANALYSIS"
[1] 3
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             11             115 
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             11             115 
[1] "EPS8L3 MUTATION ANALYSIS"
[1] 3
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               8              118 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               8              118 
[1] "RIOK1 MUTATION ANALYSIS"
[1] 3
  RIOK1 MUTATED RIOK1 WILD-TYPE 
              8             118 
  RIOK1 MUTATED RIOK1 WILD-TYPE 
              8             118 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             11             115 
  RBM10 MUTATED RBM10 WILD-TYPE 
             11             115 
[1] "USP40 MUTATION ANALYSIS"
[1] 3
  USP40 MUTATED USP40 WILD-TYPE 
             10             116 
  USP40 MUTATED USP40 WILD-TYPE 
             10             116 
[1] "NAPSA MUTATION ANALYSIS"
[1] 3
  NAPSA MUTATED NAPSA WILD-TYPE 
              8             118 
  NAPSA MUTATED NAPSA WILD-TYPE 
              8             118 
[1] "GPR25 MUTATION ANALYSIS"
[1] 3
  GPR25 MUTATED GPR25 WILD-TYPE 
              5             121 
  GPR25 MUTATED GPR25 WILD-TYPE 
              5             121 
[1] "SETD1A MUTATION ANALYSIS"
[1] 3
  SETD1A MUTATED SETD1A WILD-TYPE 
              11              115 
  SETD1A MUTATED SETD1A WILD-TYPE 
              11              115 
[1] "SEC63 MUTATION ANALYSIS"
[1] 3
  SEC63 MUTATED SEC63 WILD-TYPE 
              8             118 
  SEC63 MUTATED SEC63 WILD-TYPE 
              8             118 
[1] "GAS2L2 MUTATION ANALYSIS"
[1] 3
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
              12              114 
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
              12              114 
[1] "PHF8 MUTATION ANALYSIS"
[1] 3
  PHF8 MUTATED PHF8 WILD-TYPE 
            11            115 
  PHF8 MUTATED PHF8 WILD-TYPE 
            11            115 
[1] "SLC39A5 MUTATION ANALYSIS"
[1] 3
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                8               118 
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                8               118 
[1] "FAM82A2 MUTATION ANALYSIS"
[1] 3
  FAM82A2 MUTATED FAM82A2 WILD-TYPE 
                8               118 
  FAM82A2 MUTATED FAM82A2 WILD-TYPE 
                8               118 
[1] "CHGA MUTATION ANALYSIS"
[1] 3
  CHGA MUTATED CHGA WILD-TYPE 
            11            115 
  CHGA MUTATED CHGA WILD-TYPE 
            11            115 
[1] "EGR1 MUTATION ANALYSIS"
[1] 3
  EGR1 MUTATED EGR1 WILD-TYPE 
             7            119 
  EGR1 MUTATED EGR1 WILD-TYPE 
             7            119 
[1] "OLIG3 MUTATION ANALYSIS"
[1] 3
  OLIG3 MUTATED OLIG3 WILD-TYPE 
             10             116 
  OLIG3 MUTATED OLIG3 WILD-TYPE 
             10             116 
[1] "C14ORF49 MUTATION ANALYSIS"
[1] 3
  C14ORF49 MUTATED C14ORF49 WILD-TYPE 
                 8                118 
  C14ORF49 MUTATED C14ORF49 WILD-TYPE 
                 8                118 
[1] "TOB1 MUTATION ANALYSIS"
[1] 3
  TOB1 MUTATED TOB1 WILD-TYPE 
             6            120 
  TOB1 MUTATED TOB1 WILD-TYPE 
             6            120 
[1] "MEPCE MUTATION ANALYSIS"
[1] 3
  MEPCE MUTATED MEPCE WILD-TYPE 
             10             116 
  MEPCE MUTATED MEPCE WILD-TYPE 
             10             116 
[1] "TXLNG MUTATION ANALYSIS"
[1] 3
  TXLNG MUTATED TXLNG WILD-TYPE 
              7             119 
  TXLNG MUTATED TXLNG WILD-TYPE 
              7             119 
[1] "TTK MUTATION ANALYSIS"
[1] 3
  TTK MUTATED TTK WILD-TYPE 
           12           114 
  TTK MUTATED TTK WILD-TYPE 
           12           114 
[1] "TMCO1 MUTATION ANALYSIS"
[1] 3
  TMCO1 MUTATED TMCO1 WILD-TYPE 
              8             118 
  TMCO1 MUTATED TMCO1 WILD-TYPE 
              8             118 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               9              117 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               9              117 
[1] "PTPRF MUTATION ANALYSIS"
[1] 3
  PTPRF MUTATED PTPRF WILD-TYPE 
             13             113 
  PTPRF MUTATED PTPRF WILD-TYPE 
             13             113 
[1] "YTHDF1 MUTATION ANALYSIS"
[1] 3
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               8              118 
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               8              118 
[1] "AAMP MUTATION ANALYSIS"
[1] 3
  AAMP MUTATED AAMP WILD-TYPE 
             6            120 
  AAMP MUTATED AAMP WILD-TYPE 
             6            120 
[1] "RAI1 MUTATION ANALYSIS"
[1] 3
  RAI1 MUTATED RAI1 WILD-TYPE 
             6            120 
  RAI1 MUTATED RAI1 WILD-TYPE 
             6            120 
[1] "PDZD7 MUTATION ANALYSIS"
[1] 3
  PDZD7 MUTATED PDZD7 WILD-TYPE 
              7             119 
  PDZD7 MUTATED PDZD7 WILD-TYPE 
              7             119 
[1] "F8 MUTATION ANALYSIS"
[1] 3
  F8 MUTATED F8 WILD-TYPE 
          12          114 
  F8 MUTATED F8 WILD-TYPE 
          12          114 
[1] "CACNA1D MUTATION ANALYSIS"
[1] 3
  CACNA1D MUTATED CACNA1D WILD-TYPE 
               16               110 
  CACNA1D MUTATED CACNA1D WILD-TYPE 
               16               110 
[1] "IFNGR2 MUTATION ANALYSIS"
[1] 3
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               7              119 
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               7              119 
[1] "ALS2CR11 MUTATION ANALYSIS"
[1] 3
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
                 8                118 
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
                 8                118 
[1] "OSBPL1A MUTATION ANALYSIS"
[1] 3
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                9               117 
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                9               117 
[1] "SLC24A1 MUTATION ANALYSIS"
[1] 3
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                6               120 
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                6               120 
[1] "PDZD2 MUTATION ANALYSIS"
[1] 3
  PDZD2 MUTATED PDZD2 WILD-TYPE 
             13             113 
  PDZD2 MUTATED PDZD2 WILD-TYPE 
             13             113 
[1] "CIR1 MUTATION ANALYSIS"
[1] 3
  CIR1 MUTATED CIR1 WILD-TYPE 
             5            121 
  CIR1 MUTATED CIR1 WILD-TYPE 
             5            121 
[1] "ZNF184 MUTATION ANALYSIS"
[1] 3
  ZNF184 MUTATED ZNF184 WILD-TYPE 
              10              116 
  ZNF184 MUTATED ZNF184 WILD-TYPE 
              10              116 
[1] "RBM15B MUTATION ANALYSIS"
[1] 3
  RBM15B MUTATED RBM15B WILD-TYPE 
               7              119 
  RBM15B MUTATED RBM15B WILD-TYPE 
               7              119 
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
            17            109 
  ATRX MUTATED ATRX WILD-TYPE 
            17            109 
[1] "SBNO1 MUTATION ANALYSIS"
[1] 3
  SBNO1 MUTATED SBNO1 WILD-TYPE 
             11             115 
  SBNO1 MUTATED SBNO1 WILD-TYPE 
             11             115 
[1] "APOBEC4 MUTATION ANALYSIS"
[1] 3
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                6               120 
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                6               120 
[1] "ST6GALNAC5 MUTATION ANALYSIS"
[1] 3
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                  12                  114 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                  12                  114 
[1] "OFD1 MUTATION ANALYSIS"
[1] 3
  OFD1 MUTATED OFD1 WILD-TYPE 
             7            119 
  OFD1 MUTATED OFD1 WILD-TYPE 
             7            119 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               8              118 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               8              118 
[1] "AFTPH MUTATION ANALYSIS"
[1] 3
  AFTPH MUTATED AFTPH WILD-TYPE 
              9             117 
  AFTPH MUTATED AFTPH WILD-TYPE 
              9             117 
[1] "SYNCRIP MUTATION ANALYSIS"
[1] 3
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
                5               121 
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
                5               121 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
              9             117 
  RNF43 MUTATED RNF43 WILD-TYPE 
              9             117 
[1] "PRRG1 MUTATION ANALYSIS"
[1] 3
  PRRG1 MUTATED PRRG1 WILD-TYPE 
              6             120 
  PRRG1 MUTATED PRRG1 WILD-TYPE 
              6             120 
[1] "HSD17B7 MUTATION ANALYSIS"
[1] 3
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                8               118 
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                8               118 
[1] "HTATSF1 MUTATION ANALYSIS"
[1] 3
  HTATSF1 MUTATED HTATSF1 WILD-TYPE 
                9               117 
  HTATSF1 MUTATED HTATSF1 WILD-TYPE 
                9               117 
[1] "PRDM8 MUTATION ANALYSIS"
[1] 3
  PRDM8 MUTATED PRDM8 WILD-TYPE 
              8             118 
  PRDM8 MUTATED PRDM8 WILD-TYPE 
              8             118 
[1] "TIGD6 MUTATION ANALYSIS"
[1] 3
  TIGD6 MUTATED TIGD6 WILD-TYPE 
              7             119 
  TIGD6 MUTATED TIGD6 WILD-TYPE 
              7             119 
[1] "CLCC1 MUTATION ANALYSIS"
[1] 3
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              6             120 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              6             120 
[1] "MKL1 MUTATION ANALYSIS"
[1] 3
  MKL1 MUTATED MKL1 WILD-TYPE 
             7            119 
  MKL1 MUTATED MKL1 WILD-TYPE 
             7            119 
[1] "SFRS2IP MUTATION ANALYSIS"
[1] 3
  SFRS2IP MUTATED SFRS2IP WILD-TYPE 
               11               115 
  SFRS2IP MUTATED SFRS2IP WILD-TYPE 
               11               115 
[1] "PAK3 MUTATION ANALYSIS"
[1] 3
  PAK3 MUTATED PAK3 WILD-TYPE 
            12            114 
  PAK3 MUTATED PAK3 WILD-TYPE 
            12            114 
[1] "RTKN2 MUTATION ANALYSIS"
[1] 3
  RTKN2 MUTATED RTKN2 WILD-TYPE 
              8             118 
  RTKN2 MUTATED RTKN2 WILD-TYPE 
              8             118 
[1] "TEX2 MUTATION ANALYSIS"
[1] 3
  TEX2 MUTATED TEX2 WILD-TYPE 
             9            117 
  TEX2 MUTATED TEX2 WILD-TYPE 
             9            117 
[1] "TMEM41A MUTATION ANALYSIS"
[1] 3
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                6               120 
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                6               120 
[1] "DHX57 MUTATION ANALYSIS"
[1] 3
  DHX57 MUTATED DHX57 WILD-TYPE 
             11             115 
  DHX57 MUTATED DHX57 WILD-TYPE 
             11             115 
[1] "UHRF1BP1 MUTATION ANALYSIS"
[1] 3
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                 7                119 
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                 7                119 
[1] "NEDD4L MUTATION ANALYSIS"
[1] 3
  NEDD4L MUTATED NEDD4L WILD-TYPE 
              10              116 
  NEDD4L MUTATED NEDD4L WILD-TYPE 
              10              116 
[1] "SMCR7 MUTATION ANALYSIS"
[1] 3
  SMCR7 MUTATED SMCR7 WILD-TYPE 
              7             119 
  SMCR7 MUTATED SMCR7 WILD-TYPE 
              7             119 
[1] "PUM2 MUTATION ANALYSIS"
[1] 3
  PUM2 MUTATED PUM2 WILD-TYPE 
             7            119 
  PUM2 MUTATED PUM2 WILD-TYPE 
             7            119 
[1] "IL1R2 MUTATION ANALYSIS"
[1] 3
  IL1R2 MUTATED IL1R2 WILD-TYPE 
              6             120 
  IL1R2 MUTATED IL1R2 WILD-TYPE 
              6             120 
[1] "SLC22A9 MUTATION ANALYSIS"
[1] 3
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
                8               118 
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
                8               118 
[1] "MAGEA10 MUTATION ANALYSIS"
[1] 3
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
                6               120 
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
                6               120 
[1] "PTPLAD2 MUTATION ANALYSIS"
[1] 3
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                6               120 
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                6               120 
[1] "HERC5 MUTATION ANALYSIS"
[1] 3
  HERC5 MUTATED HERC5 WILD-TYPE 
              6             120 
  HERC5 MUTATED HERC5 WILD-TYPE 
              6             120 
[1] "WDR67 MUTATION ANALYSIS"
[1] 3
  WDR67 MUTATED WDR67 WILD-TYPE 
              5             121 
  WDR67 MUTATED WDR67 WILD-TYPE 
              5             121 
[1] "TMEM40 MUTATION ANALYSIS"
[1] 3
  TMEM40 MUTATED TMEM40 WILD-TYPE 
               6              120 
  TMEM40 MUTATED TMEM40 WILD-TYPE 
               6              120 
[1] "UNC5A MUTATION ANALYSIS"
[1] 3
  UNC5A MUTATED UNC5A WILD-TYPE 
              8             118 
  UNC5A MUTATED UNC5A WILD-TYPE 
              8             118 
[1] "AARS2 MUTATION ANALYSIS"
[1] 3
  AARS2 MUTATED AARS2 WILD-TYPE 
              7             119 
  AARS2 MUTATED AARS2 WILD-TYPE 
              7             119 
[1] "PDILT MUTATION ANALYSIS"
[1] 3
  PDILT MUTATED PDILT WILD-TYPE 
              9             117 
  PDILT MUTATED PDILT WILD-TYPE 
              9             117 
[1] "PTPN21 MUTATION ANALYSIS"
[1] 3
  PTPN21 MUTATED PTPN21 WILD-TYPE 
               8              118 
  PTPN21 MUTATED PTPN21 WILD-TYPE 
               8              118 
[1] "HIBCH MUTATION ANALYSIS"
[1] 3
  HIBCH MUTATED HIBCH WILD-TYPE 
              5             121 
  HIBCH MUTATED HIBCH WILD-TYPE 
              5             121 
[1] "C16ORF79 MUTATION ANALYSIS"
[1] 3
  C16ORF79 MUTATED C16ORF79 WILD-TYPE 
                 5                121 
  C16ORF79 MUTATED C16ORF79 WILD-TYPE 
                 5                121 
[1] "KIAA0430 MUTATION ANALYSIS"
[1] 3
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 9                117 
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 9                117 
[1] "NOX5 MUTATION ANALYSIS"
[1] 3
  NOX5 MUTATED NOX5 WILD-TYPE 
             6            120 
  NOX5 MUTATED NOX5 WILD-TYPE 
             6            120 
[1] "NF2 MUTATION ANALYSIS"
[1] 3
  NF2 MUTATED NF2 WILD-TYPE 
            5           121 
  NF2 MUTATED NF2 WILD-TYPE 
            5           121 
[1] "EPHB6 MUTATION ANALYSIS"
[1] 3
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              7             119 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              7             119 
[1] "PRMT8 MUTATION ANALYSIS"
[1] 3
  PRMT8 MUTATED PRMT8 WILD-TYPE 
              8             118 
  PRMT8 MUTATED PRMT8 WILD-TYPE 
              8             118 
[1] "TNRC6C MUTATION ANALYSIS"
[1] 3
  TNRC6C MUTATED TNRC6C WILD-TYPE 
               9              117 
  TNRC6C MUTATED TNRC6C WILD-TYPE 
               9              117 
[1] "ZC3H4 MUTATION ANALYSIS"
[1] 3
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              8             118 
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              8             118 
[1] "NRD1 MUTATION ANALYSIS"
[1] 3
  NRD1 MUTATED NRD1 WILD-TYPE 
             9            117 
  NRD1 MUTATED NRD1 WILD-TYPE 
             9            117 
[1] "ZNF552 MUTATION ANALYSIS"
[1] 3
  ZNF552 MUTATED ZNF552 WILD-TYPE 
               6              120 
  ZNF552 MUTATED ZNF552 WILD-TYPE 
               6              120 
[1] "BCAS1 MUTATION ANALYSIS"
[1] 3
  BCAS1 MUTATED BCAS1 WILD-TYPE 
              5             121 
  BCAS1 MUTATED BCAS1 WILD-TYPE 
              5             121 
[1] "SERTAD1 MUTATION ANALYSIS"
[1] 3
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                6               120 
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                6               120 
[1] "GLCCI1 MUTATION ANALYSIS"
[1] 3
  GLCCI1 MUTATED GLCCI1 WILD-TYPE 
               6              120 
  GLCCI1 MUTATED GLCCI1 WILD-TYPE 
               6              120 
[1] "WASF3 MUTATION ANALYSIS"
[1] 3
  WASF3 MUTATED WASF3 WILD-TYPE 
              8             118 
  WASF3 MUTATED WASF3 WILD-TYPE 
              8             118 
[1] "WDR5 MUTATION ANALYSIS"
[1] 3
  WDR5 MUTATED WDR5 WILD-TYPE 
             4            122 
  WDR5 MUTATED WDR5 WILD-TYPE 
             4            122 
[1] "FGF10 MUTATION ANALYSIS"
[1] 3
  FGF10 MUTATED FGF10 WILD-TYPE 
              6             120 
  FGF10 MUTATED FGF10 WILD-TYPE 
              6             120 
[1] "FAM155B MUTATION ANALYSIS"
[1] 3
  FAM155B MUTATED FAM155B WILD-TYPE 
                4               122 
  FAM155B MUTATED FAM155B WILD-TYPE 
                4               122 
[1] "RBM12 MUTATION ANALYSIS"
[1] 3
  RBM12 MUTATED RBM12 WILD-TYPE 
              6             120 
  RBM12 MUTATED RBM12 WILD-TYPE 
              6             120 
[1] "ZNF337 MUTATION ANALYSIS"
[1] 3
  ZNF337 MUTATED ZNF337 WILD-TYPE 
              10              116 
  ZNF337 MUTATED ZNF337 WILD-TYPE 
              10              116 
[1] "C16ORF46 MUTATION ANALYSIS"
[1] 3
  C16ORF46 MUTATED C16ORF46 WILD-TYPE 
                 4                122 
  C16ORF46 MUTATED C16ORF46 WILD-TYPE 
                 4                122 
[1] "TAOK2 MUTATION ANALYSIS"
[1] 3
  TAOK2 MUTATED TAOK2 WILD-TYPE 
              8             118 
  TAOK2 MUTATED TAOK2 WILD-TYPE 
              8             118 
[1] "DHX9 MUTATION ANALYSIS"
[1] 3
  DHX9 MUTATED DHX9 WILD-TYPE 
             7            119 
  DHX9 MUTATED DHX9 WILD-TYPE 
             7            119 
[1] "ZNF608 MUTATION ANALYSIS"
[1] 3
  ZNF608 MUTATED ZNF608 WILD-TYPE 
               8              118 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
               8              118 
[1] "SLITRK5 MUTATION ANALYSIS"
[1] 3
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
               15               111 
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
               15               111 
[1] "KIAA0802 MUTATION ANALYSIS"
[1] 3
  KIAA0802 MUTATED KIAA0802 WILD-TYPE 
                 5                121 
  KIAA0802 MUTATED KIAA0802 WILD-TYPE 
                 5                121 
[1] "CTRL MUTATION ANALYSIS"
[1] 3
  CTRL MUTATED CTRL WILD-TYPE 
             5            121 
  CTRL MUTATED CTRL WILD-TYPE 
             5            121 
[1] "DHX36 MUTATION ANALYSIS"
[1] 3
  DHX36 MUTATED DHX36 WILD-TYPE 
             10             116 
  DHX36 MUTATED DHX36 WILD-TYPE 
             10             116 
[1] "GTF3C3 MUTATION ANALYSIS"
[1] 3
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               5              121 
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               5              121 
[1] "OTX1 MUTATION ANALYSIS"
[1] 3
  OTX1 MUTATED OTX1 WILD-TYPE 
             7            119 
  OTX1 MUTATED OTX1 WILD-TYPE 
             7            119 
[1] "MTMR15 MUTATION ANALYSIS"
[1] 3
  MTMR15 MUTATED MTMR15 WILD-TYPE 
               8              118 
  MTMR15 MUTATED MTMR15 WILD-TYPE 
               8              118 
[1] "IYD MUTATION ANALYSIS"
[1] 3
  IYD MUTATED IYD WILD-TYPE 
            6           120 
  IYD MUTATED IYD WILD-TYPE 
            6           120 
[1] "GTF2F1 MUTATION ANALYSIS"
[1] 3
  GTF2F1 MUTATED GTF2F1 WILD-TYPE 
               5              121 
  GTF2F1 MUTATED GTF2F1 WILD-TYPE 
               5              121 
[1] "DIDO1 MUTATION ANALYSIS"
[1] 3
  DIDO1 MUTATED DIDO1 WILD-TYPE 
             14             112 
  DIDO1 MUTATED DIDO1 WILD-TYPE 
             14             112 
[1] "GNL3L MUTATION ANALYSIS"
[1] 3
  GNL3L MUTATED GNL3L WILD-TYPE 
              5             121 
  GNL3L MUTATED GNL3L WILD-TYPE 
              5             121 
[1] "ZC3H7B MUTATION ANALYSIS"
[1] 3
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
               7              119 
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
               7              119 
[1] "COL4A4 MUTATION ANALYSIS"
[1] 3
  COL4A4 MUTATED COL4A4 WILD-TYPE 
               9              117 
  COL4A4 MUTATED COL4A4 WILD-TYPE 
               9              117 
[1] "SYCP2 MUTATION ANALYSIS"
[1] 3
  SYCP2 MUTATED SYCP2 WILD-TYPE 
              8             118 
  SYCP2 MUTATED SYCP2 WILD-TYPE 
              8             118 
[1] "CNKSR2 MUTATION ANALYSIS"
[1] 3
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
              11              115 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
              11              115 
[1] "OR5A1 MUTATION ANALYSIS"
[1] 3
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              5             121 
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              5             121 
[1] "OSBPL3 MUTATION ANALYSIS"
[1] 3
  OSBPL3 MUTATED OSBPL3 WILD-TYPE 
               8              118 
  OSBPL3 MUTATED OSBPL3 WILD-TYPE 
               8              118 
[1] "HSP90AB1 MUTATION ANALYSIS"
[1] 3
  HSP90AB1 MUTATED HSP90AB1 WILD-TYPE 
                 5                121 
  HSP90AB1 MUTATED HSP90AB1 WILD-TYPE 
                 5                121 
[1] "PLAUR MUTATION ANALYSIS"
[1] 3
  PLAUR MUTATED PLAUR WILD-TYPE 
              4             122 
  PLAUR MUTATED PLAUR WILD-TYPE 
              4             122 
[1] "GPC2 MUTATION ANALYSIS"
[1] 3
  GPC2 MUTATED GPC2 WILD-TYPE 
             5            121 
  GPC2 MUTATED GPC2 WILD-TYPE 
             5            121 
[1] "ACBD3 MUTATION ANALYSIS"
[1] 3
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              4             122 
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              4             122 
[1] "PURB MUTATION ANALYSIS"
[1] 3
  PURB MUTATED PURB WILD-TYPE 
             4            122 
  PURB MUTATED PURB WILD-TYPE 
             4            122 
[1] "ABCC2 MUTATION ANALYSIS"
[1] 3
  ABCC2 MUTATED ABCC2 WILD-TYPE 
              6             120 
  ABCC2 MUTATED ABCC2 WILD-TYPE 
              6             120 
[1] "KRT73 MUTATION ANALYSIS"
[1] 3
  KRT73 MUTATED KRT73 WILD-TYPE 
              5             121 
  KRT73 MUTATED KRT73 WILD-TYPE 
              5             121 
[1] "SGOL2 MUTATION ANALYSIS"
[1] 3
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              7             119 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              7             119 
[1] "MAGEC1 MUTATION ANALYSIS"
[1] 3
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              21              105 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              21              105 
[1] "ZNF609 MUTATION ANALYSIS"
[1] 3
  ZNF609 MUTATED ZNF609 WILD-TYPE 
               4              122 
  ZNF609 MUTATED ZNF609 WILD-TYPE 
               4              122 
[1] "ATP4A MUTATION ANALYSIS"
[1] 3
  ATP4A MUTATED ATP4A WILD-TYPE 
             10             116 
  ATP4A MUTATED ATP4A WILD-TYPE 
             10             116 
[1] "TRPV2 MUTATION ANALYSIS"
[1] 3
  TRPV2 MUTATED TRPV2 WILD-TYPE 
              7             119 
  TRPV2 MUTATED TRPV2 WILD-TYPE 
              7             119 
[1] "N4BP2 MUTATION ANALYSIS"
[1] 3
  N4BP2 MUTATED N4BP2 WILD-TYPE 
              6             120 
  N4BP2 MUTATED N4BP2 WILD-TYPE 
              6             120 
[1] "HMMR MUTATION ANALYSIS"
[1] 3
  HMMR MUTATED HMMR WILD-TYPE 
             6            120 
  HMMR MUTATED HMMR WILD-TYPE 
             6            120 
[1] "CSNK1G3 MUTATION ANALYSIS"
[1] 3
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                5               121 
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                5               121 
[1] "ATP13A3 MUTATION ANALYSIS"
[1] 3
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                5               121 
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                5               121 
[1] "ZNF626 MUTATION ANALYSIS"
[1] 3
  ZNF626 MUTATED ZNF626 WILD-TYPE 
              10              116 
  ZNF626 MUTATED ZNF626 WILD-TYPE 
              10              116 
[1] "LIMD1 MUTATION ANALYSIS"
[1] 3
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              8             118 
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              8             118 
[1] "ESCO2 MUTATION ANALYSIS"
[1] 3
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              4             122 
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              4             122 
[1] "MRPS5 MUTATION ANALYSIS"
[1] 3
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              4             122 
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              4             122 
[1] "TFIP11 MUTATION ANALYSIS"
[1] 3
  TFIP11 MUTATED TFIP11 WILD-TYPE 
               6              120 
  TFIP11 MUTATED TFIP11 WILD-TYPE 
               6              120 
[1] "PVRL1 MUTATION ANALYSIS"
[1] 3
  PVRL1 MUTATED PVRL1 WILD-TYPE 
              8             118 
  PVRL1 MUTATED PVRL1 WILD-TYPE 
              8             118 
[1] "DIAPH3 MUTATION ANALYSIS"
[1] 3
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
               7              119 
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
               7              119 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
             8            118 
  IRS4 MUTATED IRS4 WILD-TYPE 
             8            118 
[1] "USP4 MUTATION ANALYSIS"
[1] 3
  USP4 MUTATED USP4 WILD-TYPE 
             7            119 
  USP4 MUTATED USP4 WILD-TYPE 
             7            119 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               8              118 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               8              118 
[1] "ZMYND8 MUTATION ANALYSIS"
[1] 3
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
               8              118 
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
               8              118 
[1] "ATG2B MUTATION ANALYSIS"
[1] 3
  ATG2B MUTATED ATG2B WILD-TYPE 
              9             117 
  ATG2B MUTATED ATG2B WILD-TYPE 
              9             117 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             13             113 
  CDH10 MUTATED CDH10 WILD-TYPE 
             13             113 
[1] "OXR1 MUTATION ANALYSIS"
[1] 3
  OXR1 MUTATED OXR1 WILD-TYPE 
             5            121 
  OXR1 MUTATED OXR1 WILD-TYPE 
             5            121 
[1] "SEC31A MUTATION ANALYSIS"
[1] 3
  SEC31A MUTATED SEC31A WILD-TYPE 
               6              120 
  SEC31A MUTATED SEC31A WILD-TYPE 
               6              120 
[1] "NDEL1 MUTATION ANALYSIS"
[1] 3
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              5             121 
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              5             121 
[1] "SHROOM4 MUTATION ANALYSIS"
[1] 3
  SHROOM4 MUTATED SHROOM4 WILD-TYPE 
               10               116 
  SHROOM4 MUTATED SHROOM4 WILD-TYPE 
               10               116 
[1] "HIRA MUTATION ANALYSIS"
[1] 3
  HIRA MUTATED HIRA WILD-TYPE 
             5            121 
  HIRA MUTATED HIRA WILD-TYPE 
             5            121 
[1] "XRCC2 MUTATION ANALYSIS"
[1] 3
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              4             122 
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              4             122 
[1] "APEX1 MUTATION ANALYSIS"
[1] 3
  APEX1 MUTATED APEX1 WILD-TYPE 
              4             122 
  APEX1 MUTATED APEX1 WILD-TYPE 
              4             122 
[1] "TMEM90B MUTATION ANALYSIS"
[1] 3
  TMEM90B MUTATED TMEM90B WILD-TYPE 
                6               120 
  TMEM90B MUTATED TMEM90B WILD-TYPE 
                6               120 
[1] "RAB11FIP1 MUTATION ANALYSIS"
[1] 3
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  7                 119 
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  7                 119 
[1] "MPP6 MUTATION ANALYSIS"
[1] 3
  MPP6 MUTATED MPP6 WILD-TYPE 
             5            121 
  MPP6 MUTATED MPP6 WILD-TYPE 
             5            121 
[1] "KIAA2018 MUTATION ANALYSIS"
[1] 3
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 8                118 
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 8                118 
[1] "CEP72 MUTATION ANALYSIS"
[1] 3
  CEP72 MUTATED CEP72 WILD-TYPE 
              6             120 
  CEP72 MUTATED CEP72 WILD-TYPE 
              6             120 
[1] "AJAP1 MUTATION ANALYSIS"
[1] 3
  AJAP1 MUTATED AJAP1 WILD-TYPE 
              8             118 
  AJAP1 MUTATED AJAP1 WILD-TYPE 
              8             118 
[1] "GABBR1 MUTATION ANALYSIS"
[1] 3
  GABBR1 MUTATED GABBR1 WILD-TYPE 
              10              116 
  GABBR1 MUTATED GABBR1 WILD-TYPE 
              10              116 
[1] "PAMR1 MUTATION ANALYSIS"
[1] 3
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              7             119 
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              7             119 
[1] "GRHPR MUTATION ANALYSIS"
[1] 3
  GRHPR MUTATED GRHPR WILD-TYPE 
              5             121 
  GRHPR MUTATED GRHPR WILD-TYPE 
              5             121 
[1] "CYP20A1 MUTATION ANALYSIS"
[1] 3
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                6               120 
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                6               120 
[1] "ARMCX3 MUTATION ANALYSIS"
[1] 3
  ARMCX3 MUTATED ARMCX3 WILD-TYPE 
               5              121 
  ARMCX3 MUTATED ARMCX3 WILD-TYPE 
               5              121 
[1] "MED23 MUTATION ANALYSIS"
[1] 3
  MED23 MUTATED MED23 WILD-TYPE 
              6             120 
  MED23 MUTATED MED23 WILD-TYPE 
              6             120 
[1] "AR MUTATION ANALYSIS"
[1] 3
  AR MUTATED AR WILD-TYPE 
           8          118 
  AR MUTATED AR WILD-TYPE 
           8          118 
[1] "NKTR MUTATION ANALYSIS"
[1] 3
  NKTR MUTATED NKTR WILD-TYPE 
             6            120 
  NKTR MUTATED NKTR WILD-TYPE 
             6            120 
[1] "VDAC1 MUTATION ANALYSIS"
[1] 3
  VDAC1 MUTATED VDAC1 WILD-TYPE 
              5             121 
  VDAC1 MUTATED VDAC1 WILD-TYPE 
              5             121 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             4            122 
  RIT1 MUTATED RIT1 WILD-TYPE 
             4            122 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              21              105 
  FAM47C MUTATED FAM47C WILD-TYPE 
              21              105 
[1] "SEC62 MUTATION ANALYSIS"
[1] 3
  SEC62 MUTATED SEC62 WILD-TYPE 
              5             121 
  SEC62 MUTATED SEC62 WILD-TYPE 
              5             121 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             120 
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             120 
[1] "PLXNA3 MUTATION ANALYSIS"
[1] 3
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               7              119 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               7              119 
[1] "ACCN2 MUTATION ANALYSIS"
[1] 3
  ACCN2 MUTATED ACCN2 WILD-TYPE 
              6             120 
  ACCN2 MUTATED ACCN2 WILD-TYPE 
              6             120 
[1] "RGS22 MUTATION ANALYSIS"
[1] 3
  RGS22 MUTATED RGS22 WILD-TYPE 
              5             121 
  RGS22 MUTATED RGS22 WILD-TYPE 
              5             121 
[1] "FRG1 MUTATION ANALYSIS"
[1] 3
  FRG1 MUTATED FRG1 WILD-TYPE 
             7            119 
  FRG1 MUTATED FRG1 WILD-TYPE 
             7            119 
[1] "CCDC88A MUTATION ANALYSIS"
[1] 3
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                6               120 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                6               120 
[1] "CR1L MUTATION ANALYSIS"
[1] 3
  CR1L MUTATED CR1L WILD-TYPE 
             5            121 
  CR1L MUTATED CR1L WILD-TYPE 
             5            121 
[1] "HDLBP MUTATION ANALYSIS"
[1] 3
  HDLBP MUTATED HDLBP WILD-TYPE 
              8             118 
  HDLBP MUTATED HDLBP WILD-TYPE 
              8             118 
[1] "KBTBD4 MUTATION ANALYSIS"
[1] 3
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               4              122 
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               4              122 
[1] "SBSN MUTATION ANALYSIS"
[1] 3
  SBSN MUTATED SBSN WILD-TYPE 
             5            121 
  SBSN MUTATED SBSN WILD-TYPE 
             5            121 
[1] "KCTD3 MUTATION ANALYSIS"
[1] 3
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              4             122 
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              4             122 
[1] "GUCY2F MUTATION ANALYSIS"
[1] 3
  GUCY2F MUTATED GUCY2F WILD-TYPE 
               7              119 
  GUCY2F MUTATED GUCY2F WILD-TYPE 
               7              119 
[1] "PHIP MUTATION ANALYSIS"
[1] 3
  PHIP MUTATED PHIP WILD-TYPE 
             7            119 
  PHIP MUTATED PHIP WILD-TYPE 
             7            119 
[1] "FOXJ2 MUTATION ANALYSIS"
[1] 3
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
              5             121 
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
              5             121 
[1] "KIF3C MUTATION ANALYSIS"
[1] 3
  KIF3C MUTATED KIF3C WILD-TYPE 
              4             122 
  KIF3C MUTATED KIF3C WILD-TYPE 
              4             122 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
               9              117 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
               9              117 
[1] "NAGPA MUTATION ANALYSIS"
[1] 3
  NAGPA MUTATED NAGPA WILD-TYPE 
              5             121 
  NAGPA MUTATED NAGPA WILD-TYPE 
              5             121 
[1] "CLIP1 MUTATION ANALYSIS"
[1] 3
  CLIP1 MUTATED CLIP1 WILD-TYPE 
              6             120 
  CLIP1 MUTATED CLIP1 WILD-TYPE 
              6             120 
[1] "FNDC7 MUTATION ANALYSIS"
[1] 3
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              4             122 
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              4             122 
[1] "MOGS MUTATION ANALYSIS"
[1] 3
  MOGS MUTATED MOGS WILD-TYPE 
             5            121 
  MOGS MUTATED MOGS WILD-TYPE 
             5            121 
[1] "BCL3 MUTATION ANALYSIS"
[1] 3
  BCL3 MUTATED BCL3 WILD-TYPE 
             5            121 
  BCL3 MUTATED BCL3 WILD-TYPE 
             5            121 
[1] "MED12L MUTATION ANALYSIS"
[1] 3
  MED12L MUTATED MED12L WILD-TYPE 
              13              113 
  MED12L MUTATED MED12L WILD-TYPE 
              13              113 
[1] "EXOC4 MUTATION ANALYSIS"
[1] 3
  EXOC4 MUTATED EXOC4 WILD-TYPE 
              7             119 
  EXOC4 MUTATED EXOC4 WILD-TYPE 
              7             119 
[1] "MARCH7 MUTATION ANALYSIS"
[1] 3
  MARCH7 MUTATED MARCH7 WILD-TYPE 
               4              122 
  MARCH7 MUTATED MARCH7 WILD-TYPE 
               4              122 
[1] "TMCC1 MUTATION ANALYSIS"
[1] 3
  TMCC1 MUTATED TMCC1 WILD-TYPE 
              6             120 
  TMCC1 MUTATED TMCC1 WILD-TYPE 
              6             120 
[1] "NBPF10 MUTATION ANALYSIS"
[1] 3
  NBPF10 MUTATED NBPF10 WILD-TYPE 
               9              117 
  NBPF10 MUTATED NBPF10 WILD-TYPE 
               9              117 
[1] "IFFO1 MUTATION ANALYSIS"
[1] 3
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              5             121 
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              5             121 
[1] "ARHGEF7 MUTATION ANALYSIS"
[1] 3
  ARHGEF7 MUTATED ARHGEF7 WILD-TYPE 
                6               120 
  ARHGEF7 MUTATED ARHGEF7 WILD-TYPE 
                6               120 
[1] "ZNF878 MUTATION ANALYSIS"
[1] 3
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               8              118 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               8              118 
[1] "AFF4 MUTATION ANALYSIS"
[1] 3
  AFF4 MUTATED AFF4 WILD-TYPE 
             4            122 
  AFF4 MUTATED AFF4 WILD-TYPE 
             4            122 
[1] "ZNF493 MUTATION ANALYSIS"
[1] 3
  ZNF493 MUTATED ZNF493 WILD-TYPE 
               9              117 
  ZNF493 MUTATED ZNF493 WILD-TYPE 
               9              117 
[1] "HMGB1 MUTATION ANALYSIS"
[1] 3
  HMGB1 MUTATED HMGB1 WILD-TYPE 
              5             121 
  HMGB1 MUTATED HMGB1 WILD-TYPE 
              5             121 
[1] "NKAP MUTATION ANALYSIS"
[1] 3
  NKAP MUTATED NKAP WILD-TYPE 
             4            122 
  NKAP MUTATED NKAP WILD-TYPE 
             4            122 
[1] "ZFP36 MUTATION ANALYSIS"
[1] 3
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              4             122 
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              4             122 
[1] "GIT1 MUTATION ANALYSIS"
[1] 3
  GIT1 MUTATED GIT1 WILD-TYPE 
             5            121 
  GIT1 MUTATED GIT1 WILD-TYPE 
             5            121 
[1] "RUNX1T1 MUTATION ANALYSIS"
[1] 3
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                5               121 
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                5               121 
[1] "RP1L1 MUTATION ANALYSIS"
[1] 3
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             14             112 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             14             112 
[1] "AP2A2 MUTATION ANALYSIS"
[1] 3
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              5             121 
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              5             121 
[1] "EIF5B MUTATION ANALYSIS"
[1] 3
  EIF5B MUTATED EIF5B WILD-TYPE 
              5             121 
  EIF5B MUTATED EIF5B WILD-TYPE 
              5             121 
[1] "WHSC1L1 MUTATION ANALYSIS"
[1] 3
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                6               120 
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                6               120 
[1] "BRCA2 MUTATION ANALYSIS"
[1] 3
  BRCA2 MUTATED BRCA2 WILD-TYPE 
              7             119 
  BRCA2 MUTATED BRCA2 WILD-TYPE 
              7             119 
[1] "E2F8 MUTATION ANALYSIS"
[1] 3
  E2F8 MUTATED E2F8 WILD-TYPE 
             4            122 
  E2F8 MUTATED E2F8 WILD-TYPE 
             4            122 
[1] "SPRR4 MUTATION ANALYSIS"
[1] 3
  SPRR4 MUTATED SPRR4 WILD-TYPE 
              4             122 
  SPRR4 MUTATED SPRR4 WILD-TYPE 
              4             122 
[1] "ZMIZ2 MUTATION ANALYSIS"
[1] 3
  ZMIZ2 MUTATED ZMIZ2 WILD-TYPE 
              6             120 
  ZMIZ2 MUTATED ZMIZ2 WILD-TYPE 
              6             120 
[1] "OR5H1 MUTATION ANALYSIS"
[1] 3
  OR5H1 MUTATED OR5H1 WILD-TYPE 
              7             119 
  OR5H1 MUTATED OR5H1 WILD-TYPE 
              7             119 
[1] "SMYD5 MUTATION ANALYSIS"
[1] 3
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              5             121 
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              5             121 
[1] "NIPA2 MUTATION ANALYSIS"
[1] 3
  NIPA2 MUTATED NIPA2 WILD-TYPE 
              3             123 
  NIPA2 MUTATED NIPA2 WILD-TYPE 
              3             123 
[1] "C7ORF16 MUTATION ANALYSIS"
[1] 3
  C7ORF16 MUTATED C7ORF16 WILD-TYPE 
                4               122 
  C7ORF16 MUTATED C7ORF16 WILD-TYPE 
                4               122 
[1] "DOCK6 MUTATION ANALYSIS"
[1] 3
  DOCK6 MUTATED DOCK6 WILD-TYPE 
              5             121 
  DOCK6 MUTATED DOCK6 WILD-TYPE 
              5             121 
[1] "OR10A2 MUTATION ANALYSIS"
[1] 3
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               4              122 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               4              122 
[1] "KDM2A MUTATION ANALYSIS"
[1] 3
  KDM2A MUTATED KDM2A WILD-TYPE 
              5             121 
  KDM2A MUTATED KDM2A WILD-TYPE 
              5             121 
[1] "RBM45 MUTATION ANALYSIS"
[1] 3
  RBM45 MUTATED RBM45 WILD-TYPE 
              5             121 
  RBM45 MUTATED RBM45 WILD-TYPE 
              5             121 
[1] "PHRF1 MUTATION ANALYSIS"
[1] 3
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              4             122 
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              4             122 
[1] "KCND3 MUTATION ANALYSIS"
[1] 3
  KCND3 MUTATED KCND3 WILD-TYPE 
              5             121 
  KCND3 MUTATED KCND3 WILD-TYPE 
              5             121 
[1] "CD1D MUTATION ANALYSIS"
[1] 3
  CD1D MUTATED CD1D WILD-TYPE 
             6            120 
  CD1D MUTATED CD1D WILD-TYPE 
             6            120 
[1] "PHF21A MUTATION ANALYSIS"
[1] 3
  PHF21A MUTATED PHF21A WILD-TYPE 
               4              122 
  PHF21A MUTATED PHF21A WILD-TYPE 
               4              122 
[1] "STEAP2 MUTATION ANALYSIS"
[1] 3
  STEAP2 MUTATED STEAP2 WILD-TYPE 
               5              121 
  STEAP2 MUTATED STEAP2 WILD-TYPE 
               5              121 
[1] "SALL1 MUTATION ANALYSIS"
[1] 3
  SALL1 MUTATED SALL1 WILD-TYPE 
             10             116 
  SALL1 MUTATED SALL1 WILD-TYPE 
             10             116 
[1] "DSTN MUTATION ANALYSIS"
[1] 3
  DSTN MUTATED DSTN WILD-TYPE 
             3            123 
  DSTN MUTATED DSTN WILD-TYPE 
             3            123 
[1] "C6ORF154 MUTATION ANALYSIS"
[1] 3
  C6ORF154 MUTATED C6ORF154 WILD-TYPE 
                 4                122 
  C6ORF154 MUTATED C6ORF154 WILD-TYPE 
                 4                122 
[1] "TDRD6 MUTATION ANALYSIS"
[1] 3
  TDRD6 MUTATED TDRD6 WILD-TYPE 
              8             118 
  TDRD6 MUTATED TDRD6 WILD-TYPE 
              8             118 
[1] "SIGLEC11 MUTATION ANALYSIS"
[1] 3
  SIGLEC11 MUTATED SIGLEC11 WILD-TYPE 
                 5                121 
  SIGLEC11 MUTATED SIGLEC11 WILD-TYPE 
                 5                121 
[1] "UGP2 MUTATION ANALYSIS"
[1] 3
  UGP2 MUTATED UGP2 WILD-TYPE 
             5            121 
  UGP2 MUTATED UGP2 WILD-TYPE 
             5            121 
[1] "SCD MUTATION ANALYSIS"
[1] 3
  SCD MUTATED SCD WILD-TYPE 
            4           122 
  SCD MUTATED SCD WILD-TYPE 
            4           122 
[1] "PANK2 MUTATION ANALYSIS"
[1] 3
  PANK2 MUTATED PANK2 WILD-TYPE 
              4             122 
  PANK2 MUTATED PANK2 WILD-TYPE 
              4             122 
[1] "GOLGA6B MUTATION ANALYSIS"
[1] 3
  GOLGA6B MUTATED GOLGA6B WILD-TYPE 
                6               120 
  GOLGA6B MUTATED GOLGA6B WILD-TYPE 
                6               120 
[1] "MKI67 MUTATION ANALYSIS"
[1] 3
  MKI67 MUTATED MKI67 WILD-TYPE 
              9             117 
  MKI67 MUTATED MKI67 WILD-TYPE 
              9             117 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
              4             122 
  STK19 MUTATED STK19 WILD-TYPE 
              4             122 
[1] "SPANXN3 MUTATION ANALYSIS"
[1] 3
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                5               121 
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                5               121 
[1] "RTEL1 MUTATION ANALYSIS"
[1] 3
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              6             120 
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              6             120 
[1] "NWD1 MUTATION ANALYSIS"
[1] 3
  NWD1 MUTATED NWD1 WILD-TYPE 
             8            118 
  NWD1 MUTATED NWD1 WILD-TYPE 
             8            118 
[1] "NBPF1 MUTATION ANALYSIS"
[1] 3
  NBPF1 MUTATED NBPF1 WILD-TYPE 
              5             121 
  NBPF1 MUTATED NBPF1 WILD-TYPE 
              5             121 
[1] "PPP1R10 MUTATION ANALYSIS"
[1] 3
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
                4               122 
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
                4               122 
[1] "DDX50 MUTATION ANALYSIS"
[1] 3
  DDX50 MUTATED DDX50 WILD-TYPE 
              5             121 
  DDX50 MUTATED DDX50 WILD-TYPE 
              5             121 
[1] "HOXA1 MUTATION ANALYSIS"
[1] 3
  HOXA1 MUTATED HOXA1 WILD-TYPE 
              4             122 
  HOXA1 MUTATED HOXA1 WILD-TYPE 
              4             122 
[1] "SLC4A3 MUTATION ANALYSIS"
[1] 3
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
               6              120 
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
               6              120 
[1] "XPA MUTATION ANALYSIS"
[1] 3
  XPA MUTATED XPA WILD-TYPE 
            3           123 
  XPA MUTATED XPA WILD-TYPE 
            3           123 
[1] "FADS2 MUTATION ANALYSIS"
[1] 3
  FADS2 MUTATED FADS2 WILD-TYPE 
              4             122 
  FADS2 MUTATED FADS2 WILD-TYPE 
              4             122 
[1] "SYT2 MUTATION ANALYSIS"
[1] 3
  SYT2 MUTATED SYT2 WILD-TYPE 
             4            122 
  SYT2 MUTATED SYT2 WILD-TYPE 
             4            122 
[1] "RBM33 MUTATION ANALYSIS"
[1] 3
  RBM33 MUTATED RBM33 WILD-TYPE 
              6             120 
  RBM33 MUTATED RBM33 WILD-TYPE 
              6             120 
[1] "ESD MUTATION ANALYSIS"
[1] 3
  ESD MUTATED ESD WILD-TYPE 
            5           121 
  ESD MUTATED ESD WILD-TYPE 
            5           121 
[1] "RANBP2 MUTATION ANALYSIS"
[1] 3
  RANBP2 MUTATED RANBP2 WILD-TYPE 
              14              112 
  RANBP2 MUTATED RANBP2 WILD-TYPE 
              14              112 
[1] "ABCB4 MUTATION ANALYSIS"
[1] 3
  ABCB4 MUTATED ABCB4 WILD-TYPE 
              5             121 
  ABCB4 MUTATED ABCB4 WILD-TYPE 
              5             121 
[1] "FHL3 MUTATION ANALYSIS"
[1] 3
  FHL3 MUTATED FHL3 WILD-TYPE 
             4            122 
  FHL3 MUTATED FHL3 WILD-TYPE 
             4            122 
[1] "NAP1L3 MUTATION ANALYSIS"
[1] 3
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               4              122 
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               4              122 
[1] "GNAS MUTATION ANALYSIS"
[1] 3
  GNAS MUTATED GNAS WILD-TYPE 
             9            117 
  GNAS MUTATED GNAS WILD-TYPE 
             9            117 
[1] "PARP14 MUTATION ANALYSIS"
[1] 3
  PARP14 MUTATED PARP14 WILD-TYPE 
               5              121 
  PARP14 MUTATED PARP14 WILD-TYPE 
               5              121 
[1] "SLCO1B3 MUTATION ANALYSIS"
[1] 3
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                7               119 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                7               119 
[1] "BCL9L MUTATION ANALYSIS"
[1] 3
  BCL9L MUTATED BCL9L WILD-TYPE 
              7             119 
  BCL9L MUTATED BCL9L WILD-TYPE 
              7             119 
[1] "ZNF428 MUTATION ANALYSIS"
[1] 3
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               3              123 
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               3              123 
[1] "ARFGAP3 MUTATION ANALYSIS"
[1] 3
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                4               122 
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                4               122 
[1] "SALL2 MUTATION ANALYSIS"
[1] 3
  SALL2 MUTATED SALL2 WILD-TYPE 
              5             121 
  SALL2 MUTATED SALL2 WILD-TYPE 
              5             121 
[1] "BMP2K MUTATION ANALYSIS"
[1] 3
  BMP2K MUTATED BMP2K WILD-TYPE 
              5             121 
  BMP2K MUTATED BMP2K WILD-TYPE 
              5             121 
[1] "RAI2 MUTATION ANALYSIS"
[1] 3
  RAI2 MUTATED RAI2 WILD-TYPE 
             4            122 
  RAI2 MUTATED RAI2 WILD-TYPE 
             4            122 
[1] "COL27A1 MUTATION ANALYSIS"
[1] 3
  COL27A1 MUTATED COL27A1 WILD-TYPE 
                4               122 
  COL27A1 MUTATED COL27A1 WILD-TYPE 
                4               122 
[1] "CCPG1 MUTATION ANALYSIS"
[1] 3
  CCPG1 MUTATED CCPG1 WILD-TYPE 
              5             121 
  CCPG1 MUTATED CCPG1 WILD-TYPE 
              5             121 
[1] "TERF1 MUTATION ANALYSIS"
[1] 3
  TERF1 MUTATED TERF1 WILD-TYPE 
              3             123 
  TERF1 MUTATED TERF1 WILD-TYPE 
              3             123 
[1] "HIST1H1B MUTATION ANALYSIS"
[1] 3
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 5                121 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 5                121 
[1] "ZMYM4 MUTATION ANALYSIS"
[1] 3
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
              4             122 
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
              4             122 
[1] "TSPYL6 MUTATION ANALYSIS"
[1] 3
  TSPYL6 MUTATED TSPYL6 WILD-TYPE 
               4              122 
  TSPYL6 MUTATED TSPYL6 WILD-TYPE 
               4              122 
[1] "SULT1C3 MUTATION ANALYSIS"
[1] 3
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                4               122 
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                4               122 
[1] "SH3PXD2A MUTATION ANALYSIS"
[1] 3
  SH3PXD2A MUTATED SH3PXD2A WILD-TYPE 
                 7                119 
  SH3PXD2A MUTATED SH3PXD2A WILD-TYPE 
                 7                119 
[1] "ZSWIM4 MUTATION ANALYSIS"
[1] 3
  ZSWIM4 MUTATED ZSWIM4 WILD-TYPE 
               5              121 
  ZSWIM4 MUTATED ZSWIM4 WILD-TYPE 
               5              121 
[1] "CCR3 MUTATION ANALYSIS"
[1] 3
  CCR3 MUTATED CCR3 WILD-TYPE 
             4            122 
  CCR3 MUTATED CCR3 WILD-TYPE 
             4            122 
[1] "CPLX3 MUTATION ANALYSIS"
[1] 3
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              4             122 
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              4             122 
[1] "RAD17 MUTATION ANALYSIS"
[1] 3
  RAD17 MUTATED RAD17 WILD-TYPE 
              5             121 
  RAD17 MUTATED RAD17 WILD-TYPE 
              5             121 
[1] "RANBP9 MUTATION ANALYSIS"
[1] 3
  RANBP9 MUTATED RANBP9 WILD-TYPE 
               5              121 
  RANBP9 MUTATED RANBP9 WILD-TYPE 
               5              121 
[1] "RASAL2 MUTATION ANALYSIS"
[1] 3
  RASAL2 MUTATED RASAL2 WILD-TYPE 
               5              121 
  RASAL2 MUTATED RASAL2 WILD-TYPE 
               5              121 
[1] "CD86 MUTATION ANALYSIS"
[1] 3
  CD86 MUTATED CD86 WILD-TYPE 
             4            122 
  CD86 MUTATED CD86 WILD-TYPE 
             4            122 
[1] "OR1N2 MUTATION ANALYSIS"
[1] 3
  OR1N2 MUTATED OR1N2 WILD-TYPE 
              6             120 
  OR1N2 MUTATED OR1N2 WILD-TYPE 
              6             120 
[1] "KIAA0408 MUTATION ANALYSIS"
[1] 3
  KIAA0408 MUTATED KIAA0408 WILD-TYPE 
                 6                120 
  KIAA0408 MUTATED KIAA0408 WILD-TYPE 
                 6                120 
[1] "GPRIN2 MUTATION ANALYSIS"
[1] 3
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
               4              122 
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
               4              122 
[1] "HSP90AA1 MUTATION ANALYSIS"
[1] 3
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 4                122 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 4                122 
[1] "SHPRH MUTATION ANALYSIS"
[1] 3
  SHPRH MUTATED SHPRH WILD-TYPE 
              5             121 
  SHPRH MUTATED SHPRH WILD-TYPE 
              5             121 
[1] "CCKAR MUTATION ANALYSIS"
[1] 3
  CCKAR MUTATED CCKAR WILD-TYPE 
              4             122 
  CCKAR MUTATED CCKAR WILD-TYPE 
              4             122 
[1] "CHRNA9 MUTATION ANALYSIS"
[1] 3
  CHRNA9 MUTATED CHRNA9 WILD-TYPE 
               4              122 
  CHRNA9 MUTATED CHRNA9 WILD-TYPE 
               4              122 
[1] "SH2D2A MUTATION ANALYSIS"
[1] 3
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               5              121 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               5              121 
[1] "SLC9A11 MUTATION ANALYSIS"
[1] 3
  SLC9A11 MUTATED SLC9A11 WILD-TYPE 
                5               121 
  SLC9A11 MUTATED SLC9A11 WILD-TYPE 
                5               121 
[1] "P2RY1 MUTATION ANALYSIS"
[1] 3
  P2RY1 MUTATED P2RY1 WILD-TYPE 
              6             120 
  P2RY1 MUTATED P2RY1 WILD-TYPE 
              6             120 
[1] "SCYL3 MUTATION ANALYSIS"
[1] 3
  SCYL3 MUTATED SCYL3 WILD-TYPE 
              4             122 
  SCYL3 MUTATED SCYL3 WILD-TYPE 
              4             122 
[1] "INTS5 MUTATION ANALYSIS"
[1] 3
  INTS5 MUTATED INTS5 WILD-TYPE 
              3             123 
  INTS5 MUTATED INTS5 WILD-TYPE 
              3             123 
[1] "DAAM1 MUTATION ANALYSIS"
[1] 3
  DAAM1 MUTATED DAAM1 WILD-TYPE 
              6             120 
  DAAM1 MUTATED DAAM1 WILD-TYPE 
              6             120 
[1] "RERE MUTATION ANALYSIS"
[1] 3
  RERE MUTATED RERE WILD-TYPE 
             6            120 
  RERE MUTATED RERE WILD-TYPE 
             6            120 
[1] "CUX2 MUTATION ANALYSIS"
[1] 3
  CUX2 MUTATED CUX2 WILD-TYPE 
             5            121 
  CUX2 MUTATED CUX2 WILD-TYPE 
             5            121 
[1] "RPTN MUTATION ANALYSIS"
[1] 3
  RPTN MUTATED RPTN WILD-TYPE 
            11            115 
  RPTN MUTATED RPTN WILD-TYPE 
            11            115 
[1] "HIST1H2BJ MUTATION ANALYSIS"
[1] 3
  HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE 
                  4                 122 
  HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE 
                  4                 122 
[1] "SLCO2A1 MUTATION ANALYSIS"
[1] 3
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                4               122 
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                4               122 
[1] "TULP1 MUTATION ANALYSIS"
[1] 3
  TULP1 MUTATED TULP1 WILD-TYPE 
              3             123 
  TULP1 MUTATED TULP1 WILD-TYPE 
              3             123 
[1] "C14ORF21 MUTATION ANALYSIS"
[1] 3
  C14ORF21 MUTATED C14ORF21 WILD-TYPE 
                 6                120 
  C14ORF21 MUTATED C14ORF21 WILD-TYPE 
                 6                120 
[1] "PPIG MUTATION ANALYSIS"
[1] 3
  PPIG MUTATED PPIG WILD-TYPE 
             4            122 
  PPIG MUTATED PPIG WILD-TYPE 
             4            122 
[1] "SLC39A4 MUTATION ANALYSIS"
[1] 3
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                4               122 
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                4               122 
[1] "CBLL1 MUTATION ANALYSIS"
[1] 3
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              4             122 
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              4             122 
[1] "FCGBP MUTATION ANALYSIS"
[1] 3
  FCGBP MUTATED FCGBP WILD-TYPE 
             12             114 
  FCGBP MUTATED FCGBP WILD-TYPE 
             12             114 
[1] "MAMSTR MUTATION ANALYSIS"
[1] 3
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               3              123 
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               3              123 
[1] "OR2T33 MUTATION ANALYSIS"
[1] 3
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               4              122 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               4              122 
[1] "KCNB1 MUTATION ANALYSIS"
[1] 3
  KCNB1 MUTATED KCNB1 WILD-TYPE 
              5             121 
  KCNB1 MUTATED KCNB1 WILD-TYPE 
              5             121 
[1] "RREB1 MUTATION ANALYSIS"
[1] 3
  RREB1 MUTATED RREB1 WILD-TYPE 
             10             116 
  RREB1 MUTATED RREB1 WILD-TYPE 
             10             116 
[1] "CANT1 MUTATION ANALYSIS"
[1] 3
  CANT1 MUTATED CANT1 WILD-TYPE 
              3             123 
  CANT1 MUTATED CANT1 WILD-TYPE 
              3             123 
[1] "SMARCA2 MUTATION ANALYSIS"
[1] 3
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                4               122 
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                4               122 
[1] "GIGYF2 MUTATION ANALYSIS"
[1] 3
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               4              122 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               4              122 
[1] "PPP2R5C MUTATION ANALYSIS"
[1] 3
  PPP2R5C MUTATED PPP2R5C WILD-TYPE 
                5               121 
  PPP2R5C MUTATED PPP2R5C WILD-TYPE 
                5               121 
[1] "COPA MUTATION ANALYSIS"
[1] 3
  COPA MUTATED COPA WILD-TYPE 
             5            121 
  COPA MUTATED COPA WILD-TYPE 
             5            121 
[1] "RCOR1 MUTATION ANALYSIS"
[1] 3
  RCOR1 MUTATED RCOR1 WILD-TYPE 
              5             121 
  RCOR1 MUTATED RCOR1 WILD-TYPE 
              5             121 
[1] "PTCD1 MUTATION ANALYSIS"
[1] 3
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              3             123 
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              3             123 
[1] "SOS1 MUTATION ANALYSIS"
[1] 3
  SOS1 MUTATED SOS1 WILD-TYPE 
             5            121 
  SOS1 MUTATED SOS1 WILD-TYPE 
             5            121 
[1] "IPO4 MUTATION ANALYSIS"
[1] 3
  IPO4 MUTATED IPO4 WILD-TYPE 
             3            123 
  IPO4 MUTATED IPO4 WILD-TYPE 
             3            123 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             116 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             116 
[1] "ZNF644 MUTATION ANALYSIS"
[1] 3
  ZNF644 MUTATED ZNF644 WILD-TYPE 
               5              121 
  ZNF644 MUTATED ZNF644 WILD-TYPE 
               5              121 
[1] "TEP1 MUTATION ANALYSIS"
[1] 3
  TEP1 MUTATED TEP1 WILD-TYPE 
             9            117 
  TEP1 MUTATED TEP1 WILD-TYPE 
             9            117 
[1] "TMEM184A MUTATION ANALYSIS"
[1] 3
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 4                122 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 4                122 
[1] "NBPF9 MUTATION ANALYSIS"
[1] 3
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              8             118 
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              8             118 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 7                119 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 7                119 
[1] "MAML3 MUTATION ANALYSIS"
[1] 3
  MAML3 MUTATED MAML3 WILD-TYPE 
              7             119 
  MAML3 MUTATED MAML3 WILD-TYPE 
              7             119 
[1] "NBPF3 MUTATION ANALYSIS"
[1] 3
  NBPF3 MUTATED NBPF3 WILD-TYPE 
             12             114 
  NBPF3 MUTATED NBPF3 WILD-TYPE 
             12             114 
[1] "TRAF3IP2 MUTATION ANALYSIS"
[1] 3
  TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE 
                 4                122 
  TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE 
                 4                122 
[1] "SMARCC2 MUTATION ANALYSIS"
[1] 3
  SMARCC2 MUTATED SMARCC2 WILD-TYPE 
                5               121 
  SMARCC2 MUTATED SMARCC2 WILD-TYPE 
                5               121 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             11             115 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             11             115 
[1] "C18ORF19 MUTATION ANALYSIS"
[1] 3
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 3                123 
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 3                123 
[1] "KIF20B MUTATION ANALYSIS"
[1] 3
  KIF20B MUTATED KIF20B WILD-TYPE 
               5              121 
  KIF20B MUTATED KIF20B WILD-TYPE 
               5              121 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
              7             119 
  KDM6A MUTATED KDM6A WILD-TYPE 
              7             119 
[1] "PRG4 MUTATION ANALYSIS"
[1] 3
  PRG4 MUTATED PRG4 WILD-TYPE 
            12            114 
  PRG4 MUTATED PRG4 WILD-TYPE 
            12            114 
[1] "PHF14 MUTATION ANALYSIS"
[1] 3
  PHF14 MUTATED PHF14 WILD-TYPE 
              3             123 
  PHF14 MUTATED PHF14 WILD-TYPE 
              3             123 
[1] "RASGRF2 MUTATION ANALYSIS"
[1] 3
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
                6               120 
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
                6               120 
[1] "PNMAL1 MUTATION ANALYSIS"
[1] 3
  PNMAL1 MUTATED PNMAL1 WILD-TYPE 
               4              122 
  PNMAL1 MUTATED PNMAL1 WILD-TYPE 
               4              122 
[1] "FOXP2 MUTATION ANALYSIS"
[1] 3
  FOXP2 MUTATED FOXP2 WILD-TYPE 
             10             116 
  FOXP2 MUTATED FOXP2 WILD-TYPE 
             10             116 
[1] "CGREF1 MUTATION ANALYSIS"
[1] 3
  CGREF1 MUTATED CGREF1 WILD-TYPE 
               6              120 
  CGREF1 MUTATED CGREF1 WILD-TYPE 
               6              120 
[1] "ZNF780A MUTATION ANALYSIS"
[1] 3
  ZNF780A MUTATED ZNF780A WILD-TYPE 
                7               119 
  ZNF780A MUTATED ZNF780A WILD-TYPE 
                7               119 
[1] "ADC MUTATION ANALYSIS"
[1] 3
  ADC MUTATED ADC WILD-TYPE 
            3           123 
  ADC MUTATED ADC WILD-TYPE 
            3           123 
[1] "FHDC1 MUTATION ANALYSIS"
[1] 3
  FHDC1 MUTATED FHDC1 WILD-TYPE 
              6             120 
  FHDC1 MUTATED FHDC1 WILD-TYPE 
              6             120 
[1] "ZNF709 MUTATION ANALYSIS"
[1] 3
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               9              117 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               9              117 
[1] "OR2J2 MUTATION ANALYSIS"
[1] 3
  OR2J2 MUTATED OR2J2 WILD-TYPE 
              4             122 
  OR2J2 MUTATED OR2J2 WILD-TYPE 
              4             122 
[1] "PLD2 MUTATION ANALYSIS"
[1] 3
  PLD2 MUTATED PLD2 WILD-TYPE 
             3            123 
  PLD2 MUTATED PLD2 WILD-TYPE 
             3            123 
[1] "SYCP1 MUTATION ANALYSIS"
[1] 3
  SYCP1 MUTATED SYCP1 WILD-TYPE 
              5             121 
  SYCP1 MUTATED SYCP1 WILD-TYPE 
              5             121 
[1] "RUNX2 MUTATION ANALYSIS"
[1] 3
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              7             119 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              7             119 
[1] "KRTAP5-3 MUTATION ANALYSIS"
[1] 3
  KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE 
                 7                119 
  KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE 
                 7                119 
[1] "SSBP3 MUTATION ANALYSIS"
[1] 3
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             123 
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             123 
[1] "ZNF347 MUTATION ANALYSIS"
[1] 3
  ZNF347 MUTATED ZNF347 WILD-TYPE 
               5              121 
  ZNF347 MUTATED ZNF347 WILD-TYPE 
               5              121 
[1] "IPO13 MUTATION ANALYSIS"
[1] 3
  IPO13 MUTATED IPO13 WILD-TYPE 
              4             122 
  IPO13 MUTATED IPO13 WILD-TYPE 
              4             122 
[1] "ACSM4 MUTATION ANALYSIS"
[1] 3
  ACSM4 MUTATED ACSM4 WILD-TYPE 
              4             122 
  ACSM4 MUTATED ACSM4 WILD-TYPE 
              4             122 
[1] "SPAG17 MUTATION ANALYSIS"
[1] 3
  SPAG17 MUTATED SPAG17 WILD-TYPE 
               8              118 
  SPAG17 MUTATED SPAG17 WILD-TYPE 
               8              118 
[1] "OGFOD1 MUTATION ANALYSIS"
[1] 3
  OGFOD1 MUTATED OGFOD1 WILD-TYPE 
               3              123 
  OGFOD1 MUTATED OGFOD1 WILD-TYPE 
               3              123 
[1] "ZADH2 MUTATION ANALYSIS"
[1] 3
  ZADH2 MUTATED ZADH2 WILD-TYPE 
              3             123 
  ZADH2 MUTATED ZADH2 WILD-TYPE 
              3             123 
[1] "G2E3 MUTATION ANALYSIS"
[1] 3
  G2E3 MUTATED G2E3 WILD-TYPE 
             4            122 
  G2E3 MUTATED G2E3 WILD-TYPE 
             4            122 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              7             119 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              7             119 
[1] "SCLT1 MUTATION ANALYSIS"
[1] 3
  SCLT1 MUTATED SCLT1 WILD-TYPE 
              5             121 
  SCLT1 MUTATED SCLT1 WILD-TYPE 
              5             121 
[1] "EAF2 MUTATION ANALYSIS"
[1] 3
  EAF2 MUTATED EAF2 WILD-TYPE 
             3            123 
  EAF2 MUTATED EAF2 WILD-TYPE 
             3            123 
[1] "REPS1 MUTATION ANALYSIS"
[1] 3
  REPS1 MUTATED REPS1 WILD-TYPE 
              4             122 
  REPS1 MUTATED REPS1 WILD-TYPE 
              4             122 
[1] "ZNF43 MUTATION ANALYSIS"
[1] 3
  ZNF43 MUTATED ZNF43 WILD-TYPE 
              7             119 
  ZNF43 MUTATED ZNF43 WILD-TYPE 
              7             119 
[1] "PRPF4 MUTATION ANALYSIS"
[1] 3
  PRPF4 MUTATED PRPF4 WILD-TYPE 
              3             123 
  PRPF4 MUTATED PRPF4 WILD-TYPE 
              3             123 
[1] "CMTM1 MUTATION ANALYSIS"
[1] 3
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              3             123 
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              3             123 
[1] "L1CAM MUTATION ANALYSIS"
[1] 3
  L1CAM MUTATED L1CAM WILD-TYPE 
              6             120 
  L1CAM MUTATED L1CAM WILD-TYPE 
              6             120 
[1] "MMP14 MUTATION ANALYSIS"
[1] 3
  MMP14 MUTATED MMP14 WILD-TYPE 
              4             122 
  MMP14 MUTATED MMP14 WILD-TYPE 
              4             122 
[1] "CENPF MUTATION ANALYSIS"
[1] 3
  CENPF MUTATED CENPF WILD-TYPE 
              5             121 
  CENPF MUTATED CENPF WILD-TYPE 
              5             121 
[1] "AMAC1L2 MUTATION ANALYSIS"
[1] 3
  AMAC1L2 MUTATED AMAC1L2 WILD-TYPE 
                6               120 
  AMAC1L2 MUTATED AMAC1L2 WILD-TYPE 
                6               120 
[1] "PPARGC1B MUTATION ANALYSIS"
[1] 3
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 5                121 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 5                121 
[1] "ERBB2IP MUTATION ANALYSIS"
[1] 3
  ERBB2IP MUTATED ERBB2IP WILD-TYPE 
                5               121 
  ERBB2IP MUTATED ERBB2IP WILD-TYPE 
                5               121 
[1] "PRF1 MUTATION ANALYSIS"
[1] 3
  PRF1 MUTATED PRF1 WILD-TYPE 
             6            120 
  PRF1 MUTATED PRF1 WILD-TYPE 
             6            120 
[1] "WNT2 MUTATION ANALYSIS"
[1] 3
  WNT2 MUTATED WNT2 WILD-TYPE 
             6            120 
  WNT2 MUTATED WNT2 WILD-TYPE 
             6            120 
[1] "R3HDM1 MUTATION ANALYSIS"
[1] 3
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               5              121 
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               5              121 
[1] "THRA MUTATION ANALYSIS"
[1] 3
  THRA MUTATED THRA WILD-TYPE 
             4            122 
  THRA MUTATED THRA WILD-TYPE 
             4            122 
[1] "MGAT2 MUTATION ANALYSIS"
[1] 3
  MGAT2 MUTATED MGAT2 WILD-TYPE 
              4             122 
  MGAT2 MUTATED MGAT2 WILD-TYPE 
              4             122 
[1] "HMX2 MUTATION ANALYSIS"
[1] 3
  HMX2 MUTATED HMX2 WILD-TYPE 
             4            122 
  HMX2 MUTATED HMX2 WILD-TYPE 
             4            122 
[1] "KRTAP4-8 MUTATION ANALYSIS"
[1] 3
  KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE 
                 5                121 
  KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE 
                 5                121 
[1] "TBC1D1 MUTATION ANALYSIS"
[1] 3
  TBC1D1 MUTATED TBC1D1 WILD-TYPE 
               4              122 
  TBC1D1 MUTATED TBC1D1 WILD-TYPE 
               4              122 
[1] "MTR MUTATION ANALYSIS"
[1] 3
  MTR MUTATED MTR WILD-TYPE 
            7           119 
  MTR MUTATED MTR WILD-TYPE 
            7           119 
[1] "CCDC103 MUTATION ANALYSIS"
[1] 3
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                3               123 
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                3               123 
[1] "RBBP8 MUTATION ANALYSIS"
[1] 3
  RBBP8 MUTATED RBBP8 WILD-TYPE 
              5             121 
  RBBP8 MUTATED RBBP8 WILD-TYPE 
              5             121 
[1] "FAM102A MUTATION ANALYSIS"
[1] 3
  FAM102A MUTATED FAM102A WILD-TYPE 
                4               122 
  FAM102A MUTATED FAM102A WILD-TYPE 
                4               122 
[1] "FAM18A MUTATION ANALYSIS"
[1] 3
  FAM18A MUTATED FAM18A WILD-TYPE 
               3              123 
  FAM18A MUTATED FAM18A WILD-TYPE 
               3              123 
[1] "AMAC1 MUTATION ANALYSIS"
[1] 3
  AMAC1 MUTATED AMAC1 WILD-TYPE 
              7             119 
  AMAC1 MUTATED AMAC1 WILD-TYPE 
              7             119 
[1] "NFATC2 MUTATION ANALYSIS"
[1] 3
  NFATC2 MUTATED NFATC2 WILD-TYPE 
               6              120 
  NFATC2 MUTATED NFATC2 WILD-TYPE 
               6              120 
[1] "RNF128 MUTATION ANALYSIS"
[1] 3
  RNF128 MUTATED RNF128 WILD-TYPE 
               5              121 
  RNF128 MUTATED RNF128 WILD-TYPE 
               5              121 
[1] "PCLO MUTATION ANALYSIS"
[1] 3
  PCLO MUTATED PCLO WILD-TYPE 
             8            118 
  PCLO MUTATED PCLO WILD-TYPE 
             8            118 
[1] "NCOA7 MUTATION ANALYSIS"
[1] 3
  NCOA7 MUTATED NCOA7 WILD-TYPE 
              3             123 
  NCOA7 MUTATED NCOA7 WILD-TYPE 
              3             123 
[1] "POM121 MUTATION ANALYSIS"
[1] 3
  POM121 MUTATED POM121 WILD-TYPE 
               5              121 
  POM121 MUTATED POM121 WILD-TYPE 
               5              121 
[1] "HIST1H2BK MUTATION ANALYSIS"
[1] 3
  HIST1H2BK MUTATED HIST1H2BK WILD-TYPE 
                  4                 122 
  HIST1H2BK MUTATED HIST1H2BK WILD-TYPE 
                  4                 122 
[1] "ZHX3 MUTATION ANALYSIS"
[1] 3
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             7            119 
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             7            119 
[1] "RGPD3 MUTATION ANALYSIS"
[1] 3
  RGPD3 MUTATED RGPD3 WILD-TYPE 
              8             118 
  RGPD3 MUTATED RGPD3 WILD-TYPE 
              8             118 
[1] "ZNF554 MUTATION ANALYSIS"
[1] 3
  ZNF554 MUTATED ZNF554 WILD-TYPE 
               3              123 
  ZNF554 MUTATED ZNF554 WILD-TYPE 
               3              123 
[1] "RETN MUTATION ANALYSIS"
[1] 3
  RETN MUTATED RETN WILD-TYPE 
             3            123 
  RETN MUTATED RETN WILD-TYPE 
             3            123 
[1] "RSC1A1 MUTATION ANALYSIS"
[1] 3
  RSC1A1 MUTATED RSC1A1 WILD-TYPE 
               3              123 
  RSC1A1 MUTATED RSC1A1 WILD-TYPE 
               3              123 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
            14            112 
  RYR2 MUTATED RYR2 WILD-TYPE 
            14            112 
[1] "HNRNPCL1 MUTATION ANALYSIS"
[1] 3
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 6                120 
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 6                120 
[1] "SEPHS2 MUTATION ANALYSIS"
[1] 3
  SEPHS2 MUTATED SEPHS2 WILD-TYPE 
               5              121 
  SEPHS2 MUTATED SEPHS2 WILD-TYPE 
               5              121 
[1] "KIAA0020 MUTATION ANALYSIS"
[1] 3
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 3                123 
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 3                123 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               3              123 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               3              123 
[1] "CCDC158 MUTATION ANALYSIS"
[1] 3
  CCDC158 MUTATED CCDC158 WILD-TYPE 
                4               122 
  CCDC158 MUTATED CCDC158 WILD-TYPE 
                4               122 
[1] "FTH1 MUTATION ANALYSIS"
[1] 3
  FTH1 MUTATED FTH1 WILD-TYPE 
             3            123 
  FTH1 MUTATED FTH1 WILD-TYPE 
             3            123 
[1] "BCKDHA MUTATION ANALYSIS"
[1] 3
  BCKDHA MUTATED BCKDHA WILD-TYPE 
               3              123 
  BCKDHA MUTATED BCKDHA WILD-TYPE 
               3              123 
[1] "SLC34A2 MUTATION ANALYSIS"
[1] 3
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                5               121 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                5               121 
[1] "RAB11FIP5 MUTATION ANALYSIS"
[1] 3
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  3                 123 
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  3                 123 
[1] "ATP6V1A MUTATION ANALYSIS"
[1] 3
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                3               123 
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                3               123 
[1] "TMEM41B MUTATION ANALYSIS"
[1] 3
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                3               123 
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                3               123 
[1] "GIGYF1 MUTATION ANALYSIS"
[1] 3
  GIGYF1 MUTATED GIGYF1 WILD-TYPE 
               3              123 
  GIGYF1 MUTATED GIGYF1 WILD-TYPE 
               3              123 
[1] "EPB41L4B MUTATION ANALYSIS"
[1] 3
  EPB41L4B MUTATED EPB41L4B WILD-TYPE 
                 4                122 
  EPB41L4B MUTATED EPB41L4B WILD-TYPE 
                 4                122 
[1] "EPHX1 MUTATION ANALYSIS"
[1] 3
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              4             122 
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              4             122 
[1] "LUZP1 MUTATION ANALYSIS"
[1] 3
  LUZP1 MUTATED LUZP1 WILD-TYPE 
              3             123 
  LUZP1 MUTATED LUZP1 WILD-TYPE 
              3             123 
[1] "ZHX1 MUTATION ANALYSIS"
[1] 3
  ZHX1 MUTATED ZHX1 WILD-TYPE 
             3            123 
  ZHX1 MUTATED ZHX1 WILD-TYPE 
             3            123 
[1] "GNAL MUTATION ANALYSIS"
[1] 3
  GNAL MUTATED GNAL WILD-TYPE 
             3            123 
  GNAL MUTATED GNAL WILD-TYPE 
             3            123 
[1] "DOCK10 MUTATION ANALYSIS"
[1] 3
  DOCK10 MUTATED DOCK10 WILD-TYPE 
               6              120 
  DOCK10 MUTATED DOCK10 WILD-TYPE 
               6              120 
[1] "CDC25A MUTATION ANALYSIS"
[1] 3
  CDC25A MUTATED CDC25A WILD-TYPE 
               3              123 
  CDC25A MUTATED CDC25A WILD-TYPE 
               3              123 
[1] "VPS24 MUTATION ANALYSIS"
[1] 3
  VPS24 MUTATED VPS24 WILD-TYPE 
              3             123 
  VPS24 MUTATED VPS24 WILD-TYPE 
              3             123 
[1] "F5 MUTATION ANALYSIS"
[1] 3
  F5 MUTATED F5 WILD-TYPE 
          11          115 
  F5 MUTATED F5 WILD-TYPE 
          11          115 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
             6            120 
  AFF2 MUTATED AFF2 WILD-TYPE 
             6            120 
[1] "ZFHX3 MUTATION ANALYSIS"
[1] 3
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             10             116 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             10             116 
[1] "RNF168 MUTATION ANALYSIS"
[1] 3
  RNF168 MUTATED RNF168 WILD-TYPE 
               4              122 
  RNF168 MUTATED RNF168 WILD-TYPE 
               4              122 
[1] "TGFBI MUTATION ANALYSIS"
[1] 3
  TGFBI MUTATED TGFBI WILD-TYPE 
              6             120 
  TGFBI MUTATED TGFBI WILD-TYPE 
              6             120 
[1] "KLK13 MUTATION ANALYSIS"
[1] 3
  KLK13 MUTATED KLK13 WILD-TYPE 
              5             121 
  KLK13 MUTATED KLK13 WILD-TYPE 
              5             121 
[1] "ASS1 MUTATION ANALYSIS"
[1] 3
  ASS1 MUTATED ASS1 WILD-TYPE 
             4            122 
  ASS1 MUTATED ASS1 WILD-TYPE 
             4            122 
[1] "FOXD4 MUTATION ANALYSIS"
[1] 3
  FOXD4 MUTATED FOXD4 WILD-TYPE 
              6             120 
  FOXD4 MUTATED FOXD4 WILD-TYPE 
              6             120 
[1] "PVRL4 MUTATION ANALYSIS"
[1] 3
  PVRL4 MUTATED PVRL4 WILD-TYPE 
              3             123 
  PVRL4 MUTATED PVRL4 WILD-TYPE 
              3             123 
[1] "NBEA MUTATION ANALYSIS"
[1] 3
  NBEA MUTATED NBEA WILD-TYPE 
             3            123 
  NBEA MUTATED NBEA WILD-TYPE 
             3            123 
[1] "ZNF737 MUTATION ANALYSIS"
[1] 3
  ZNF737 MUTATED ZNF737 WILD-TYPE 
               5              121 
  ZNF737 MUTATED ZNF737 WILD-TYPE 
               5              121 
[1] "CPVL MUTATION ANALYSIS"
[1] 3
  CPVL MUTATED CPVL WILD-TYPE 
             3            123 
  CPVL MUTATED CPVL WILD-TYPE 
             3            123 
[1] "AGAP6 MUTATION ANALYSIS"
[1] 3
  AGAP6 MUTATED AGAP6 WILD-TYPE 
              5             121 
  AGAP6 MUTATED AGAP6 WILD-TYPE 
              5             121 
[1] "MMP13 MUTATION ANALYSIS"
[1] 3
  MMP13 MUTATED MMP13 WILD-TYPE 
              4             122 
  MMP13 MUTATED MMP13 WILD-TYPE 
              4             122 
[1] "BCL11A MUTATION ANALYSIS"
[1] 3
  BCL11A MUTATED BCL11A WILD-TYPE 
               6              120 
  BCL11A MUTATED BCL11A WILD-TYPE 
               6              120 
[1] "ZNF207 MUTATION ANALYSIS"
[1] 3
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               4              122 
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               4              122 
[1] "CCDC55 MUTATION ANALYSIS"
[1] 3
  CCDC55 MUTATED CCDC55 WILD-TYPE 
               3              123 
  CCDC55 MUTATED CCDC55 WILD-TYPE 
               3              123 
[1] "ORAI3 MUTATION ANALYSIS"
[1] 3
  ORAI3 MUTATED ORAI3 WILD-TYPE 
              3             123 
  ORAI3 MUTATED ORAI3 WILD-TYPE 
              3             123 
[1] "LAMA1 MUTATION ANALYSIS"
[1] 3
  LAMA1 MUTATED LAMA1 WILD-TYPE 
              8             118 
  LAMA1 MUTATED LAMA1 WILD-TYPE 
              8             118 
[1] "AFAP1L2 MUTATION ANALYSIS"
[1] 3
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                4               122 
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                4               122 
[1] "ATXN2L MUTATION ANALYSIS"
[1] 3
  ATXN2L MUTATED ATXN2L WILD-TYPE 
               4              122 
  ATXN2L MUTATED ATXN2L WILD-TYPE 
               4              122 
[1] "BECN1 MUTATION ANALYSIS"
[1] 3
  BECN1 MUTATED BECN1 WILD-TYPE 
              3             123 
  BECN1 MUTATED BECN1 WILD-TYPE 
              3             123 
[1] "MAP3K7 MUTATION ANALYSIS"
[1] 3
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
               4              122 
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
               4              122 
[1] "HVCN1 MUTATION ANALYSIS"
[1] 3
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              4             122 
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              4             122 
[1] "AKAP11 MUTATION ANALYSIS"
[1] 3
  AKAP11 MUTATED AKAP11 WILD-TYPE 
               5              121 
  AKAP11 MUTATED AKAP11 WILD-TYPE 
               5              121 
[1] "ENPP7 MUTATION ANALYSIS"
[1] 3
  ENPP7 MUTATED ENPP7 WILD-TYPE 
              6             120 
  ENPP7 MUTATED ENPP7 WILD-TYPE 
              6             120 
[1] "UNC5D MUTATION ANALYSIS"
[1] 3
  UNC5D MUTATED UNC5D WILD-TYPE 
              4             122 
  UNC5D MUTATED UNC5D WILD-TYPE 
              4             122 
[1] "TTF1 MUTATION ANALYSIS"
[1] 3
  TTF1 MUTATED TTF1 WILD-TYPE 
             4            122 
  TTF1 MUTATED TTF1 WILD-TYPE 
             4            122 
[1] "CD93 MUTATION ANALYSIS"
[1] 3
  CD93 MUTATED CD93 WILD-TYPE 
             5            121 
  CD93 MUTATED CD93 WILD-TYPE 
             5            121 
[1] "CEACAM8 MUTATION ANALYSIS"
[1] 3
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                3               123 
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                3               123 
[1] "PARP1 MUTATION ANALYSIS"
[1] 3
  PARP1 MUTATED PARP1 WILD-TYPE 
              4             122 
  PARP1 MUTATED PARP1 WILD-TYPE 
              4             122 
[1] "CRNN MUTATION ANALYSIS"
[1] 3
  CRNN MUTATED CRNN WILD-TYPE 
            10            116 
  CRNN MUTATED CRNN WILD-TYPE 
            10            116 
[1] "ZNF254 MUTATION ANALYSIS"
[1] 3
  ZNF254 MUTATED ZNF254 WILD-TYPE 
               5              121 
  ZNF254 MUTATED ZNF254 WILD-TYPE 
               5              121 
[1] "ADAM30 MUTATION ANALYSIS"
[1] 3
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               3              123 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               3              123 
[1] "DRD5 MUTATION ANALYSIS"
[1] 3
  DRD5 MUTATED DRD5 WILD-TYPE 
             4            122 
  DRD5 MUTATED DRD5 WILD-TYPE 
             4            122 
[1] "MKI67IP MUTATION ANALYSIS"
[1] 3
  MKI67IP MUTATED MKI67IP WILD-TYPE 
                4               122 
  MKI67IP MUTATED MKI67IP WILD-TYPE 
                4               122 
[1] "SYNPO2L MUTATION ANALYSIS"
[1] 3
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                6               120 
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                6               120 
[1] "PROX1 MUTATION ANALYSIS"
[1] 3
  PROX1 MUTATED PROX1 WILD-TYPE 
              4             122 
  PROX1 MUTATED PROX1 WILD-TYPE 
              4             122 
[1] "KLK15 MUTATION ANALYSIS"
[1] 3
  KLK15 MUTATED KLK15 WILD-TYPE 
              6             120 
  KLK15 MUTATED KLK15 WILD-TYPE 
              6             120 
[1] "C14ORF115 MUTATION ANALYSIS"
[1] 3
  C14ORF115 MUTATED C14ORF115 WILD-TYPE 
                  3                 123 
  C14ORF115 MUTATED C14ORF115 WILD-TYPE 
                  3                 123 
[1] "SNIP1 MUTATION ANALYSIS"
[1] 3
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              3             123 
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              3             123 
[1] "MAP7D3 MUTATION ANALYSIS"
[1] 3
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
               4              122 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
               4              122 
[1] "RBM16 MUTATION ANALYSIS"
[1] 3
  RBM16 MUTATED RBM16 WILD-TYPE 
              4             122 
  RBM16 MUTATED RBM16 WILD-TYPE 
              4             122 
[1] "PHACTR2 MUTATION ANALYSIS"
[1] 3
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                3               123 
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                3               123 
[1] "TLR1 MUTATION ANALYSIS"
[1] 3
  TLR1 MUTATED TLR1 WILD-TYPE 
             4            122 
  TLR1 MUTATED TLR1 WILD-TYPE 
             4            122 
[1] "OR6C74 MUTATION ANALYSIS"
[1] 3
  OR6C74 MUTATED OR6C74 WILD-TYPE 
               3              123 
  OR6C74 MUTATED OR6C74 WILD-TYPE 
               3              123 
[1] "ROBO3 MUTATION ANALYSIS"
[1] 3
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              7             119 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              7             119 
[1] "SLC45A4 MUTATION ANALYSIS"
[1] 3
  SLC45A4 MUTATED SLC45A4 WILD-TYPE 
                6               120 
  SLC45A4 MUTATED SLC45A4 WILD-TYPE 
                6               120 
[1] "COQ9 MUTATION ANALYSIS"
[1] 3
  COQ9 MUTATED COQ9 WILD-TYPE 
             3            123 
  COQ9 MUTATED COQ9 WILD-TYPE 
             3            123 
[1] "CLCN3 MUTATION ANALYSIS"
[1] 3
  CLCN3 MUTATED CLCN3 WILD-TYPE 
              3             123 
  CLCN3 MUTATED CLCN3 WILD-TYPE 
              3             123 
[1] "SFRS11 MUTATION ANALYSIS"
[1] 3
  SFRS11 MUTATED SFRS11 WILD-TYPE 
               3              123 
  SFRS11 MUTATED SFRS11 WILD-TYPE 
               3              123 
[1] "SIGLEC14 MUTATION ANALYSIS"
[1] 3
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 3                123 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 3                123 
[1] "PRKCD MUTATION ANALYSIS"
[1] 3
  PRKCD MUTATED PRKCD WILD-TYPE 
              5             121 
  PRKCD MUTATED PRKCD WILD-TYPE 
              5             121 
[1] "ATP2B2 MUTATION ANALYSIS"
[1] 3
  ATP2B2 MUTATED ATP2B2 WILD-TYPE 
               5              121 
  ATP2B2 MUTATED ATP2B2 WILD-TYPE 
               5              121 
[1] "RASAL1 MUTATION ANALYSIS"
[1] 3
  RASAL1 MUTATED RASAL1 WILD-TYPE 
               3              123 
  RASAL1 MUTATED RASAL1 WILD-TYPE 
               3              123 
[1] "NPIP MUTATION ANALYSIS"
[1] 3
  NPIP MUTATED NPIP WILD-TYPE 
             3            123 
  NPIP MUTATED NPIP WILD-TYPE 
             3            123 
[1] "DISP1 MUTATION ANALYSIS"
[1] 3
  DISP1 MUTATED DISP1 WILD-TYPE 
              9             117 
  DISP1 MUTATED DISP1 WILD-TYPE 
              9             117 
[1] "CD14 MUTATION ANALYSIS"
[1] 3
  CD14 MUTATED CD14 WILD-TYPE 
             3            123 
  CD14 MUTATED CD14 WILD-TYPE 
             3            123 
[1] "TATDN2 MUTATION ANALYSIS"
[1] 3
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               4              122 
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               4              122 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
               9              117 
  ARID1A MUTATED ARID1A WILD-TYPE 
               9              117 
[1] "ZC3H11A MUTATION ANALYSIS"
[1] 3
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                5               121 
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                5               121 
[1] "ANKRD49 MUTATION ANALYSIS"
[1] 3
  ANKRD49 MUTATED ANKRD49 WILD-TYPE 
                3               123 
  ANKRD49 MUTATED ANKRD49 WILD-TYPE 
                3               123 
[1] "NDUFV2 MUTATION ANALYSIS"
[1] 3
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               3              123 
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               3              123 
[1] "PPP1R12C MUTATION ANALYSIS"
[1] 3
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 4                122 
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 4                122 
[1] "CCDC74A MUTATION ANALYSIS"
[1] 3
  CCDC74A MUTATED CCDC74A WILD-TYPE 
                4               122 
  CCDC74A MUTATED CCDC74A WILD-TYPE 
                4               122 
[1] "C3ORF15 MUTATION ANALYSIS"
[1] 3
  C3ORF15 MUTATED C3ORF15 WILD-TYPE 
                4               122 
  C3ORF15 MUTATED C3ORF15 WILD-TYPE 
                4               122 
[1] "DCX MUTATION ANALYSIS"
[1] 3
  DCX MUTATED DCX WILD-TYPE 
            3           123 
  DCX MUTATED DCX WILD-TYPE 
            3           123 
[1] "HMGCR MUTATION ANALYSIS"
[1] 3
  HMGCR MUTATED HMGCR WILD-TYPE 
              6             120 
  HMGCR MUTATED HMGCR WILD-TYPE 
              6             120 
[1] "ITPR2 MUTATION ANALYSIS"
[1] 3
  ITPR2 MUTATED ITPR2 WILD-TYPE 
              5             121 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
              5             121 
[1] "FZD7 MUTATION ANALYSIS"
[1] 3
  FZD7 MUTATED FZD7 WILD-TYPE 
             4            122 
  FZD7 MUTATED FZD7 WILD-TYPE 
             4            122 
[1] "TGFBR1 MUTATION ANALYSIS"
[1] 3
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
               6              120 
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
               6              120 
[1] "LRRC41 MUTATION ANALYSIS"
[1] 3
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               3              123 
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               3              123 
[1] "STAG3 MUTATION ANALYSIS"
[1] 3
  STAG3 MUTATED STAG3 WILD-TYPE 
              5             121 
  STAG3 MUTATED STAG3 WILD-TYPE 
              5             121 
[1] "PSME4 MUTATION ANALYSIS"
[1] 3
  PSME4 MUTATED PSME4 WILD-TYPE 
              5             121 
  PSME4 MUTATED PSME4 WILD-TYPE 
              5             121 
[1] "LILRA2 MUTATION ANALYSIS"
[1] 3
  LILRA2 MUTATED LILRA2 WILD-TYPE 
               5              121 
  LILRA2 MUTATED LILRA2 WILD-TYPE 
               5              121 
[1] "ATP2C2 MUTATION ANALYSIS"
[1] 3
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
               4              122 
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
               4              122 
[1] "KIAA1211 MUTATION ANALYSIS"
[1] 3
  KIAA1211 MUTATED KIAA1211 WILD-TYPE 
                 5                121 
  KIAA1211 MUTATED KIAA1211 WILD-TYPE 
                 5                121 
[1] "LPIN3 MUTATION ANALYSIS"
[1] 3
  LPIN3 MUTATED LPIN3 WILD-TYPE 
              4             122 
  LPIN3 MUTATED LPIN3 WILD-TYPE 
              4             122 
[1] "WDR8 MUTATION ANALYSIS"
[1] 3
  WDR8 MUTATED WDR8 WILD-TYPE 
             4            122 
  WDR8 MUTATED WDR8 WILD-TYPE 
             4            122 
[1] "ASH1L MUTATION ANALYSIS"
[1] 3
  ASH1L MUTATED ASH1L WILD-TYPE 
              6             120 
  ASH1L MUTATED ASH1L WILD-TYPE 
              6             120 
[1] "SPINT1 MUTATION ANALYSIS"
[1] 3
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               3              123 
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               3              123 
[1] "SARS2 MUTATION ANALYSIS"
[1] 3
  SARS2 MUTATED SARS2 WILD-TYPE 
              4             122 
  SARS2 MUTATED SARS2 WILD-TYPE 
              4             122 
[1] "DNAH7 MUTATION ANALYSIS"
[1] 3
  DNAH7 MUTATED DNAH7 WILD-TYPE 
              8             118 
  DNAH7 MUTATED DNAH7 WILD-TYPE 
              8             118 
[1] "XIRP2 MUTATION ANALYSIS"
[1] 3
  XIRP2 MUTATED XIRP2 WILD-TYPE 
              6             120 
  XIRP2 MUTATED XIRP2 WILD-TYPE 
              6             120 
[1] "SLC4A5 MUTATION ANALYSIS"
[1] 3
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               4              122 
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               4              122 
[1] "BTN2A2 MUTATION ANALYSIS"
[1] 3
  BTN2A2 MUTATED BTN2A2 WILD-TYPE 
               3              123 
  BTN2A2 MUTATED BTN2A2 WILD-TYPE 
               3              123 
[1] "SV2A MUTATION ANALYSIS"
[1] 3
  SV2A MUTATED SV2A WILD-TYPE 
             4            122 
  SV2A MUTATED SV2A WILD-TYPE 
             4            122 
[1] "MORC3 MUTATION ANALYSIS"
[1] 3
  MORC3 MUTATED MORC3 WILD-TYPE 
              3             123 
  MORC3 MUTATED MORC3 WILD-TYPE 
              3             123 
[1] "HABP4 MUTATION ANALYSIS"
[1] 3
  HABP4 MUTATED HABP4 WILD-TYPE 
              4             122 
  HABP4 MUTATED HABP4 WILD-TYPE 
              4             122 
[1] "SLC5A3 MUTATION ANALYSIS"
[1] 3
  SLC5A3 MUTATED SLC5A3 WILD-TYPE 
               4              122 
  SLC5A3 MUTATED SLC5A3 WILD-TYPE 
               4              122 
[1] "TGOLN2 MUTATION ANALYSIS"
[1] 3
  TGOLN2 MUTATED TGOLN2 WILD-TYPE 
               3              123 
  TGOLN2 MUTATED TGOLN2 WILD-TYPE 
               3              123 
[1] "HIST1H1E MUTATION ANALYSIS"
[1] 3
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 3                123 
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 3                123 
[1] "APOA1BP MUTATION ANALYSIS"
[1] 3
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                4               122 
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                4               122 
[1] "AKNAD1 MUTATION ANALYSIS"
[1] 3
  AKNAD1 MUTATED AKNAD1 WILD-TYPE 
               3              123 
  AKNAD1 MUTATED AKNAD1 WILD-TYPE 
               3              123 
[1] "MMP9 MUTATION ANALYSIS"
[1] 3
  MMP9 MUTATED MMP9 WILD-TYPE 
             3            123 
  MMP9 MUTATED MMP9 WILD-TYPE 
             3            123 
[1] "SCAND3 MUTATION ANALYSIS"
[1] 3
  SCAND3 MUTATED SCAND3 WILD-TYPE 
               5              121 
  SCAND3 MUTATED SCAND3 WILD-TYPE 
               5              121 
[1] "RNGTT MUTATION ANALYSIS"
[1] 3
  RNGTT MUTATED RNGTT WILD-TYPE 
              3             123 
  RNGTT MUTATED RNGTT WILD-TYPE 
              3             123 
[1] "C1QTNF7 MUTATION ANALYSIS"
[1] 3
  C1QTNF7 MUTATED C1QTNF7 WILD-TYPE 
                4               122 
  C1QTNF7 MUTATED C1QTNF7 WILD-TYPE 
                4               122 
[1] "CHMP2A MUTATION ANALYSIS"
[1] 3
  CHMP2A MUTATED CHMP2A WILD-TYPE 
               4              122 
  CHMP2A MUTATED CHMP2A WILD-TYPE 
               4              122 
[1] "ATP6V0A4 MUTATION ANALYSIS"
[1] 3
  ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE 
                 6                120 
  ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE 
                 6                120 
[1] "FANCD2 MUTATION ANALYSIS"
[1] 3
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              119 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              119 
[1] "ZCCHC11 MUTATION ANALYSIS"
[1] 3
  ZCCHC11 MUTATED ZCCHC11 WILD-TYPE 
                8               118 
  ZCCHC11 MUTATED ZCCHC11 WILD-TYPE 
                8               118 
[1] "GRM1 MUTATION ANALYSIS"
[1] 3
  GRM1 MUTATED GRM1 WILD-TYPE 
             8            118 
  GRM1 MUTATED GRM1 WILD-TYPE 
             8            118 
[1] "TNFRSF11A MUTATION ANALYSIS"
[1] 3
  TNFRSF11A MUTATED TNFRSF11A WILD-TYPE 
                  4                 122 
  TNFRSF11A MUTATED TNFRSF11A WILD-TYPE 
                  4                 122 
[1] "ANKRD30A MUTATION ANALYSIS"
[1] 3
  ANKRD30A MUTATED ANKRD30A WILD-TYPE 
                 7                119 
  ANKRD30A MUTATED ANKRD30A WILD-TYPE 
                 7                119 
[1] "SNX32 MUTATION ANALYSIS"
[1] 3
  SNX32 MUTATED SNX32 WILD-TYPE 
              4             122 
  SNX32 MUTATED SNX32 WILD-TYPE 
              4             122 
[1] "BRF1 MUTATION ANALYSIS"
[1] 3
  BRF1 MUTATED BRF1 WILD-TYPE 
             4            122 
  BRF1 MUTATED BRF1 WILD-TYPE 
             4            122 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
             9            117 
  TPTE MUTATED TPTE WILD-TYPE 
             9            117 
[1] "EXOSC10 MUTATION ANALYSIS"
[1] 3
  EXOSC10 MUTATED EXOSC10 WILD-TYPE 
                3               123 
  EXOSC10 MUTATED EXOSC10 WILD-TYPE 
                3               123 
[1] "DUSP13 MUTATION ANALYSIS"
[1] 3
  DUSP13 MUTATED DUSP13 WILD-TYPE 
               3              123 
  DUSP13 MUTATED DUSP13 WILD-TYPE 
               3              123 
[1] "C1ORF110 MUTATION ANALYSIS"
[1] 3
  C1ORF110 MUTATED C1ORF110 WILD-TYPE 
                 4                122 
  C1ORF110 MUTATED C1ORF110 WILD-TYPE 
                 4                122 
[1] "PCOLCE2 MUTATION ANALYSIS"
[1] 3
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                3               123 
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                3               123 
[1] "FLVCR1 MUTATION ANALYSIS"
[1] 3
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               3              123 
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               3              123 
[1] "EXOSC5 MUTATION ANALYSIS"
[1] 3
  EXOSC5 MUTATED EXOSC5 WILD-TYPE 
               4              122 
  EXOSC5 MUTATED EXOSC5 WILD-TYPE 
               4              122 
[1] "PDXDC1 MUTATION ANALYSIS"
[1] 3
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               3              123 
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               3              123 
[1] "C11ORF63 MUTATION ANALYSIS"
[1] 3
  C11ORF63 MUTATED C11ORF63 WILD-TYPE 
                 3                123 
  C11ORF63 MUTATED C11ORF63 WILD-TYPE 
                 3                123 
[1] "FAM71F1 MUTATION ANALYSIS"
[1] 3
  FAM71F1 MUTATED FAM71F1 WILD-TYPE 
                3               123 
  FAM71F1 MUTATED FAM71F1 WILD-TYPE 
                3               123 
[1] "UBE2Q1 MUTATION ANALYSIS"
[1] 3
  UBE2Q1 MUTATED UBE2Q1 WILD-TYPE 
               3              123 
  UBE2Q1 MUTATED UBE2Q1 WILD-TYPE 
               3              123 
[1] "GALNT10 MUTATION ANALYSIS"
[1] 3
  GALNT10 MUTATED GALNT10 WILD-TYPE 
                5               121 
  GALNT10 MUTATED GALNT10 WILD-TYPE 
                5               121 
[1] "PPL MUTATION ANALYSIS"
[1] 3
  PPL MUTATED PPL WILD-TYPE 
            4           122 
  PPL MUTATED PPL WILD-TYPE 
            4           122 
[1] "CDC42BPG MUTATION ANALYSIS"
[1] 3
  CDC42BPG MUTATED CDC42BPG WILD-TYPE 
                 5                121 
  CDC42BPG MUTATED CDC42BPG WILD-TYPE 
                 5                121 
[1] "THBS1 MUTATION ANALYSIS"
[1] 3
  THBS1 MUTATED THBS1 WILD-TYPE 
              7             119 
  THBS1 MUTATED THBS1 WILD-TYPE 
              7             119 
[1] "LAMA3 MUTATION ANALYSIS"
[1] 3
  LAMA3 MUTATED LAMA3 WILD-TYPE 
              4             122 
  LAMA3 MUTATED LAMA3 WILD-TYPE 
              4             122 
[1] "DYRK4 MUTATION ANALYSIS"
[1] 3
  DYRK4 MUTATED DYRK4 WILD-TYPE 
              3             123 
  DYRK4 MUTATED DYRK4 WILD-TYPE 
              3             123 
[1] "HNRNPH1 MUTATION ANALYSIS"
[1] 3
  HNRNPH1 MUTATED HNRNPH1 WILD-TYPE 
                4               122 
  HNRNPH1 MUTATED HNRNPH1 WILD-TYPE 
                4               122 
[1] "UGT1A10 MUTATION ANALYSIS"
[1] 3
  UGT1A10 MUTATED UGT1A10 WILD-TYPE 
                4               122 
  UGT1A10 MUTATED UGT1A10 WILD-TYPE 
                4               122 
[1] "TEKT4 MUTATION ANALYSIS"
[1] 3
  TEKT4 MUTATED TEKT4 WILD-TYPE 
              6             120 
  TEKT4 MUTATED TEKT4 WILD-TYPE 
              6             120 
[1] "PHTF2 MUTATION ANALYSIS"
[1] 3
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              4             122 
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              4             122 
[1] "CDC6 MUTATION ANALYSIS"
[1] 3
  CDC6 MUTATED CDC6 WILD-TYPE 
             3            123 
  CDC6 MUTATED CDC6 WILD-TYPE 
             3            123 
[1] "PRKDC MUTATION ANALYSIS"
[1] 3
  PRKDC MUTATED PRKDC WILD-TYPE 
              3             123 
  PRKDC MUTATED PRKDC WILD-TYPE 
              3             123 
[1] "KDM6B MUTATION ANALYSIS"
[1] 3
  KDM6B MUTATED KDM6B WILD-TYPE 
              6             120 
  KDM6B MUTATED KDM6B WILD-TYPE 
              6             120 
[1] "LRRCC1 MUTATION ANALYSIS"
[1] 3
  LRRCC1 MUTATED LRRCC1 WILD-TYPE 
               5              121 
  LRRCC1 MUTATED LRRCC1 WILD-TYPE 
               5              121 
[1] "ZNF285 MUTATION ANALYSIS"
[1] 3
  ZNF285 MUTATED ZNF285 WILD-TYPE 
               4              122 
  ZNF285 MUTATED ZNF285 WILD-TYPE 
               4              122 
[1] "RPS6KA5 MUTATION ANALYSIS"
[1] 3
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
                4               122 
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
                4               122 
[1] "ASB11 MUTATION ANALYSIS"
[1] 3
  ASB11 MUTATED ASB11 WILD-TYPE 
              3             123 
  ASB11 MUTATED ASB11 WILD-TYPE 
              3             123 
[1] "CCT8 MUTATION ANALYSIS"
[1] 3
  CCT8 MUTATED CCT8 WILD-TYPE 
             4            122 
  CCT8 MUTATED CCT8 WILD-TYPE 
             4            122 
[1] "PSMB4 MUTATION ANALYSIS"
[1] 3
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              4             122 
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              4             122 
[1] "SIGLEC7 MUTATION ANALYSIS"
[1] 3
  SIGLEC7 MUTATED SIGLEC7 WILD-TYPE 
                3               123 
  SIGLEC7 MUTATED SIGLEC7 WILD-TYPE 
                3               123 
[1] "ATP2B3 MUTATION ANALYSIS"
[1] 3
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               3              123 
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               3              123 
[1] "CCDC130 MUTATION ANALYSIS"
[1] 3
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                4               122 
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                4               122 
[1] "BAT2 MUTATION ANALYSIS"
[1] 3
  BAT2 MUTATED BAT2 WILD-TYPE 
             6            120 
  BAT2 MUTATED BAT2 WILD-TYPE 
             6            120 
[1] "STARD3 MUTATION ANALYSIS"
[1] 3
  STARD3 MUTATED STARD3 WILD-TYPE 
               3              123 
  STARD3 MUTATED STARD3 WILD-TYPE 
               3              123 
[1] "C16ORF70 MUTATION ANALYSIS"
[1] 3
  C16ORF70 MUTATED C16ORF70 WILD-TYPE 
                 4                122 
  C16ORF70 MUTATED C16ORF70 WILD-TYPE 
                 4                122 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              5             121 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              5             121 
[1] "LATS1 MUTATION ANALYSIS"
[1] 3
  LATS1 MUTATED LATS1 WILD-TYPE 
              5             121 
  LATS1 MUTATED LATS1 WILD-TYPE 
              5             121 
[1] "LARP1B MUTATION ANALYSIS"
[1] 3
  LARP1B MUTATED LARP1B WILD-TYPE 
               3              123 
  LARP1B MUTATED LARP1B WILD-TYPE 
               3              123 
[1] "PTPN14 MUTATION ANALYSIS"
[1] 3
  PTPN14 MUTATED PTPN14 WILD-TYPE 
               6              120 
  PTPN14 MUTATED PTPN14 WILD-TYPE 
               6              120 
[1] "PHKA2 MUTATION ANALYSIS"
[1] 3
  PHKA2 MUTATED PHKA2 WILD-TYPE 
              6             120 
  PHKA2 MUTATED PHKA2 WILD-TYPE 
              6             120 
[1] "ABCC3 MUTATION ANALYSIS"
[1] 3
  ABCC3 MUTATED ABCC3 WILD-TYPE 
              3             123 
  ABCC3 MUTATED ABCC3 WILD-TYPE 
              3             123 
[1] "CPNE2 MUTATION ANALYSIS"
[1] 3
  CPNE2 MUTATED CPNE2 WILD-TYPE 
              3             123 
  CPNE2 MUTATED CPNE2 WILD-TYPE 
              3             123 
[1] "MICALCL MUTATION ANALYSIS"
[1] 3
  MICALCL MUTATED MICALCL WILD-TYPE 
                4               122 
  MICALCL MUTATED MICALCL WILD-TYPE 
                4               122 
[1] "SPAG9 MUTATION ANALYSIS"
[1] 3
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              4             122 
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              4             122 
[1] "SLITRK3 MUTATION ANALYSIS"
[1] 3
  SLITRK3 MUTATED SLITRK3 WILD-TYPE 
                4               122 
  SLITRK3 MUTATED SLITRK3 WILD-TYPE 
                4               122 
[1] "HIST1H2BE MUTATION ANALYSIS"
[1] 3
  HIST1H2BE MUTATED HIST1H2BE WILD-TYPE 
                  3                 123 
  HIST1H2BE MUTATED HIST1H2BE WILD-TYPE 
                  3                 123 
[1] "NGF MUTATION ANALYSIS"
[1] 3
  NGF MUTATED NGF WILD-TYPE 
            4           122 
  NGF MUTATED NGF WILD-TYPE 
            4           122 
[1] "EHMT2 MUTATION ANALYSIS"
[1] 3
  EHMT2 MUTATED EHMT2 WILD-TYPE 
              3             123 
  EHMT2 MUTATED EHMT2 WILD-TYPE 
              3             123 
[1] "PLEKHG2 MUTATION ANALYSIS"
[1] 3
  PLEKHG2 MUTATED PLEKHG2 WILD-TYPE 
                5               121 
  PLEKHG2 MUTATED PLEKHG2 WILD-TYPE 
                5               121 
[1] "SRFBP1 MUTATION ANALYSIS"
[1] 3
  SRFBP1 MUTATED SRFBP1 WILD-TYPE 
               3              123 
  SRFBP1 MUTATED SRFBP1 WILD-TYPE 
               3              123 
[1] "TSC22D1 MUTATION ANALYSIS"
[1] 3
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                3               123 
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                3               123 
[1] "EEF2 MUTATION ANALYSIS"
[1] 3
  EEF2 MUTATED EEF2 WILD-TYPE 
             4            122 
  EEF2 MUTATED EEF2 WILD-TYPE 
             4            122 
[1] "E2F7 MUTATION ANALYSIS"
[1] 3
  E2F7 MUTATED E2F7 WILD-TYPE 
             3            123 
  E2F7 MUTATED E2F7 WILD-TYPE 
             3            123 
[1] "NR2C1 MUTATION ANALYSIS"
[1] 3
  NR2C1 MUTATED NR2C1 WILD-TYPE 
              3             123 
  NR2C1 MUTATED NR2C1 WILD-TYPE 
              3             123 
[1] "ASPM MUTATION ANALYSIS"
[1] 3
  ASPM MUTATED ASPM WILD-TYPE 
             9            117 
  ASPM MUTATED ASPM WILD-TYPE 
             9            117 
[1] "CCDC108 MUTATION ANALYSIS"
[1] 3
  CCDC108 MUTATED CCDC108 WILD-TYPE 
                3               123 
  CCDC108 MUTATED CCDC108 WILD-TYPE 
                3               123 
[1] "PDGFRB MUTATION ANALYSIS"
[1] 3
  PDGFRB MUTATED PDGFRB WILD-TYPE 
               4              122 
  PDGFRB MUTATED PDGFRB WILD-TYPE 
               4              122 
[1] "TWISTNB MUTATION ANALYSIS"
[1] 3
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                3               123 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                3               123 
[1] "GRIN3B MUTATION ANALYSIS"
[1] 3
  GRIN3B MUTATED GRIN3B WILD-TYPE 
               4              122 
  GRIN3B MUTATED GRIN3B WILD-TYPE 
               4              122 
[1] "ENTPD2 MUTATION ANALYSIS"
[1] 3
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               4              122 
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               4              122 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
              4             122 
  STK11 MUTATED STK11 WILD-TYPE 
              4             122 
[1] "LBR MUTATION ANALYSIS"
[1] 3
  LBR MUTATED LBR WILD-TYPE 
            4           122 
  LBR MUTATED LBR WILD-TYPE 
            4           122 
[1] "AKD1 MUTATION ANALYSIS"
[1] 3
  AKD1 MUTATED AKD1 WILD-TYPE 
             3            123 
  AKD1 MUTATED AKD1 WILD-TYPE 
             3            123 
[1] "GABRD MUTATION ANALYSIS"
[1] 3
  GABRD MUTATED GABRD WILD-TYPE 
              4             122 
  GABRD MUTATED GABRD WILD-TYPE 
              4             122 
[1] "CEACAM5 MUTATION ANALYSIS"
[1] 3
  CEACAM5 MUTATED CEACAM5 WILD-TYPE 
                4               122 
  CEACAM5 MUTATED CEACAM5 WILD-TYPE 
                4               122 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 126 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 126 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       16     47     17     20
  KRAS WILD-TYPE      3      6     13      4
D1V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           16              3
  CLUS_2           47              6
  CLUS_3           17             13
  CLUS_4           20              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       31     19     30     19
  KRAS WILD-TYPE      4     11      4      7
D1V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           31              4
  CLUS_2           19             11
  CLUS_3           30              4
  CLUS_4           19              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       22     16     10      7     11
  KRAS WILD-TYPE      7      2      3      2      2
D1V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           22              7
  CLUS_2           16              2
  CLUS_3           10              3
  CLUS_4            7              2
  CLUS_5           11              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       27     17      8      5      9
  KRAS WILD-TYPE      5      1      4      5      1
D1V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           27              5
  CLUS_2           17              1
  CLUS_3            8              4
  CLUS_4            5              5
  CLUS_5            9              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       23     10     25     19     16
  KRAS WILD-TYPE      3     10      3      6      4
D1V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           23              3
  CLUS_2           10             10
  CLUS_3           25              3
  CLUS_4           19              6
  CLUS_5           16              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       42     45      6
  KRAS WILD-TYPE      6      8     12
D1V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           42              6
  CLUS_2           45              8
  CLUS_3            6             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       34     24     16     10      9
  KRAS WILD-TYPE      3      7      1     11      4
D1V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           34              3
  CLUS_2           24              7
  CLUS_3           16              1
  CLUS_4           10             11
  CLUS_5            9              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       63     20     10
  KRAS WILD-TYPE      8      7     11
D1V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           63              8
  CLUS_2           20              7
  CLUS_3           10             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED       17      6      7      5     30     22      4
  KRAS WILD-TYPE      1      2      3      3      6      3      8
D1V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           17              1
  CLUS_2            6              2
  CLUS_3            7              3
  CLUS_4            5              3
  CLUS_5           30              6
  CLUS_6           22              3
  CLUS_7            4              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRAS MUTATED       16     30      8     26     11      0
  KRAS WILD-TYPE      1      2      5      6      5      7
D1V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           16              1
  CLUS_2           30              2
  CLUS_3            8              5
  CLUS_4           26              6
  CLUS_5           11              5
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       12     42     13     14
  TP53 WILD-TYPE      7     11     17     10
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           12              7
  CLUS_2           42             11
  CLUS_3           13             17
  CLUS_4           14             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       24     14     25     17
  TP53 WILD-TYPE     11     16      9      9
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             11
  CLUS_2           14             16
  CLUS_3           25              9
  CLUS_4           17              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       21     13      8      4      8
  TP53 WILD-TYPE      8      5      5      5      5
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           21              8
  CLUS_2           13              5
  CLUS_3            8              5
  CLUS_4            4              5
  CLUS_5            8              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       24     14      5      3      8
  TP53 WILD-TYPE      8      4      7      7      2
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24              8
  CLUS_2           14              4
  CLUS_3            5              7
  CLUS_4            3              7
  CLUS_5            8              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       16     10     23     15     12
  TP53 WILD-TYPE     10     10      5     10      8
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             10
  CLUS_2           10             10
  CLUS_3           23              5
  CLUS_4           15             10
  CLUS_5           12              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       36     33      7
  TP53 WILD-TYPE     12     20     11
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           36             12
  CLUS_2           33             20
  CLUS_3            7             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       26     18     14      8     10
  TP53 WILD-TYPE     11     13      3     13      3
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           26             11
  CLUS_2           18             13
  CLUS_3           14              3
  CLUS_4            8             13
  CLUS_5           10              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       49     17     10
  TP53 WILD-TYPE     22     10     11
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           49             22
  CLUS_2           17             10
  CLUS_3           10             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED       15      5      6      4     26     14      5
  TP53 WILD-TYPE      3      3      4      4     10     11      7
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15              3
  CLUS_2            5              3
  CLUS_3            6              4
  CLUS_4            4              4
  CLUS_5           26             10
  CLUS_6           14             11
  CLUS_7            5              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       13     23      7     21     11      0
  TP53 WILD-TYPE      4      9      6     11      5      7
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           13              4
  CLUS_2           23              9
  CLUS_3            7              6
  CLUS_4           21             11
  CLUS_5           11              5
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = MAMLD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAMLD1 MUTATED        4     12      4      8
  MAMLD1 WILD-TYPE     15     41     26     16
D3V1, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              4               15
  CLUS_2             12               41
  CLUS_3              4               26
  CLUS_4              8               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAMLD1 MUTATED        8      5     11      4
  MAMLD1 WILD-TYPE     27     25     23     22
D3V2, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              8               27
  CLUS_2              5               25
  CLUS_3             11               23
  CLUS_4              4               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMLD1 MUTATED        5      4      1      3      2
  MAMLD1 WILD-TYPE     24     14     12      6     11
D3V3, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              5               24
  CLUS_2              4               14
  CLUS_3              1               12
  CLUS_4              3                6
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMLD1 MUTATED        7      3      3      2      0
  MAMLD1 WILD-TYPE     25     15      9      8     10
D3V4, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              7               25
  CLUS_2              3               15
  CLUS_3              3                9
  CLUS_4              2                8
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMLD1 MUTATED        9      7      7      2      3
  MAMLD1 WILD-TYPE     17     13     21     23     17
D3V5, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              9               17
  CLUS_2              7               13
  CLUS_3              7               21
  CLUS_4              2               23
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAMLD1 MUTATED        7     17      4
  MAMLD1 WILD-TYPE     41     36     14
D3V6, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              7               41
  CLUS_2             17               36
  CLUS_3              4               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMLD1 MUTATED       11      5      3      6      3
  MAMLD1 WILD-TYPE     26     26     14     15     10
D3V7, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1             11               26
  CLUS_2              5               26
  CLUS_3              3               14
  CLUS_4              6               15
  CLUS_5              3               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAMLD1 MUTATED       20      3      5
  MAMLD1 WILD-TYPE     51     24     16
D3V8, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1             20               51
  CLUS_2              3               24
  CLUS_3              5               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAMLD1 MUTATED        2      4      3      2      9      5      3
  MAMLD1 WILD-TYPE     16      4      7      6     27     20      9
D3V9, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              4                4
  CLUS_3              3                7
  CLUS_4              2                6
  CLUS_5              9               27
  CLUS_6              5               20
  CLUS_7              3                9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAMLD1 MUTATED        5     11      4      4      1      3
  MAMLD1 WILD-TYPE     12     21      9     28     15      4
D3V10, multiclass
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  CLUS_1              5               12
  CLUS_2             11               21
  CLUS_3              4                9
  CLUS_4              4               28
  CLUS_5              1               15
  CLUS_6              3                4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        2     19      1      5
  CDKN2A WILD-TYPE     17     34     29     19
D4V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               17
  CLUS_2             19               34
  CLUS_3              1               29
  CLUS_4              5               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       13      5      8      1
  CDKN2A WILD-TYPE     22     25     26     25
D4V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             13               22
  CLUS_2              5               25
  CLUS_3              8               26
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        6      3      6      3      0
  CDKN2A WILD-TYPE     23     15      7      6     13
D4V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6               23
  CLUS_2              3               15
  CLUS_3              6                7
  CLUS_4              3                6
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        8      3      3      2      2
  CDKN2A WILD-TYPE     24     15      9      8      8
D4V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              8               24
  CLUS_2              3               15
  CLUS_3              3                9
  CLUS_4              2                8
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        5      6      8      6      1
  CDKN2A WILD-TYPE     21     14     20     19     19
D4V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               21
  CLUS_2              6               14
  CLUS_3              8               20
  CLUS_4              6               19
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       12     13      1
  CDKN2A WILD-TYPE     36     40     17
D4V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             12               36
  CLUS_2             13               40
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        9      5      5      3      4
  CDKN2A WILD-TYPE     28     26     12     18      9
D4V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              9               28
  CLUS_2              5               26
  CLUS_3              5               12
  CLUS_4              3               18
  CLUS_5              4                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       15      8      3
  CDKN2A WILD-TYPE     56     19     18
D4V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             15               56
  CLUS_2              8               19
  CLUS_3              3               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDKN2A MUTATED        6      1      1      0      7     10      1
  CDKN2A WILD-TYPE     12      7      9      8     29     15     11
D4V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6               12
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              7               29
  CLUS_6             10               15
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2A MUTATED        1     10      1     12      2      0
  CDKN2A WILD-TYPE     16     22     12     20     14      7
D4V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               16
  CLUS_2             10               22
  CLUS_3              1               12
  CLUS_4             12               20
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = CD99L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD99L2 MUTATED        3      9      3      5
  CD99L2 WILD-TYPE     16     44     27     19
D5V1, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              3               16
  CLUS_2              9               44
  CLUS_3              3               27
  CLUS_4              5               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD99L2 MUTATED        5      6      5      4
  CD99L2 WILD-TYPE     30     24     29     22
D5V2, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              5               30
  CLUS_2              6               24
  CLUS_3              5               29
  CLUS_4              4               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD99L2 MUTATED        3      2      1      2      1
  CD99L2 WILD-TYPE     26     16     12      7     12
D5V3, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              2               16
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD99L2 MUTATED        3      2      2      2      0
  CD99L2 WILD-TYPE     29     16     10      8     10
D5V4, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              2               16
  CLUS_3              2               10
  CLUS_4              2                8
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD99L2 MUTATED        5      2      4      6      3
  CD99L2 WILD-TYPE     21     18     24     19     17
D5V5, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              5               21
  CLUS_2              2               18
  CLUS_3              4               24
  CLUS_4              6               19
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD99L2 MUTATED       10      8      2
  CD99L2 WILD-TYPE     38     45     16
D5V6, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1             10               38
  CLUS_2              8               45
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD99L2 MUTATED        7      4      6      1      2
  CD99L2 WILD-TYPE     30     27     11     20     11
D5V7, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              7               30
  CLUS_2              4               27
  CLUS_3              6               11
  CLUS_4              1               20
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD99L2 MUTATED       12      6      2
  CD99L2 WILD-TYPE     59     21     19
D5V8, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1             12               59
  CLUS_2              6               21
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD99L2 MUTATED        5      3      0      3      6      2      1
  CD99L2 WILD-TYPE     13      5     10      5     30     23     11
D5V9, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              5               13
  CLUS_2              3                5
  CLUS_3              0               10
  CLUS_4              3                5
  CLUS_5              6               30
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD99L2 MUTATED        4      6      2      7      1      0
  CD99L2 WILD-TYPE     13     26     11     25     15      7
D5V10, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              4               13
  CLUS_2              6               26
  CLUS_3              2               11
  CLUS_4              7               25
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = IPP MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPP MUTATED        0      9      9      2
  IPP WILD-TYPE     19     44     21     22
D6V1, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           0            19
  CLUS_2           9            44
  CLUS_3           9            21
  CLUS_4           2            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPP MUTATED        5      2      7      6
  IPP WILD-TYPE     30     28     27     20
D6V2, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           5            30
  CLUS_2           2            28
  CLUS_3           7            27
  CLUS_4           6            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPP MUTATED        4      2      4      1      4
  IPP WILD-TYPE     25     16      9      8      9
D6V3, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           4            25
  CLUS_2           2            16
  CLUS_3           4             9
  CLUS_4           1             8
  CLUS_5           4             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPP MUTATED        4      2      4      1      4
  IPP WILD-TYPE     28     16      8      9      6
D6V4, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           4            28
  CLUS_2           2            16
  CLUS_3           4             8
  CLUS_4           1             9
  CLUS_5           4             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPP MUTATED        6      3      5      1      5
  IPP WILD-TYPE     20     17     23     24     15
D6V5, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           6            20
  CLUS_2           3            17
  CLUS_3           5            23
  CLUS_4           1            24
  CLUS_5           5            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IPP MUTATED        5     10      5
  IPP WILD-TYPE     43     43     13
D6V6, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           5            43
  CLUS_2          10            43
  CLUS_3           5            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPP MUTATED        6      7      1      3      3
  IPP WILD-TYPE     31     24     16     18     10
D6V7, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           6            31
  CLUS_2           7            24
  CLUS_3           1            16
  CLUS_4           3            18
  CLUS_5           3            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IPP MUTATED       13      2      5
  IPP WILD-TYPE     58     25     16
D6V8, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1          13            58
  CLUS_2           2            25
  CLUS_3           5            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IPP MUTATED        1      1      2      2      5      7      1
  IPP WILD-TYPE     17      7      8      6     31     18     11
D6V9, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           1            17
  CLUS_2           1             7
  CLUS_3           2             8
  CLUS_4           2             6
  CLUS_5           5            31
  CLUS_6           7            18
  CLUS_7           1            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IPP MUTATED        2      5      3      2      6      1
  IPP WILD-TYPE     15     27     10     30     10      6
D6V10, multiclass
        clus
vv       IPP MUTATED IPP WILD-TYPE
  CLUS_1           2            15
  CLUS_2           5            27
  CLUS_3           3            10
  CLUS_4           2            30
  CLUS_5           6            10
  CLUS_6           1             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = IRS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        3      8      6      3
  IRS1 WILD-TYPE     16     45     24     21
D7V1, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            3             16
  CLUS_2            8             45
  CLUS_3            6             24
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        6      5      5      4
  IRS1 WILD-TYPE     29     25     29     22
D7V2, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            6             29
  CLUS_2            5             25
  CLUS_3            5             29
  CLUS_4            4             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        3      2      2      1      3
  IRS1 WILD-TYPE     26     16     11      8     10
D7V3, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            3             26
  CLUS_2            2             16
  CLUS_3            2             11
  CLUS_4            1              8
  CLUS_5            3             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        4      2      2      1      2
  IRS1 WILD-TYPE     28     16     10      9      8
D7V4, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            2             16
  CLUS_3            2             10
  CLUS_4            1              9
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        6      3      5      3      3
  IRS1 WILD-TYPE     20     17     23     22     17
D7V5, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            6             20
  CLUS_2            3             17
  CLUS_3            5             23
  CLUS_4            3             22
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        9      9      2
  IRS1 WILD-TYPE     39     44     16
D7V6, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            9             39
  CLUS_2            9             44
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        5      2      5      4      4
  IRS1 WILD-TYPE     32     29     12     17      9
D7V7, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            5             32
  CLUS_2            2             29
  CLUS_3            5             12
  CLUS_4            4             17
  CLUS_5            4              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED       12      5      3
  IRS1 WILD-TYPE     59     22     18
D7V8, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1           12             59
  CLUS_2            5             22
  CLUS_3            3             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS1 MUTATED        6      3      2      3      4      1      1
  IRS1 WILD-TYPE     12      5      8      5     32     24     11
D7V9, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            6             12
  CLUS_2            3              5
  CLUS_3            2              8
  CLUS_4            3              5
  CLUS_5            4             32
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS1 MUTATED        7      2      3      6      2      0
  IRS1 WILD-TYPE     10     30     10     26     14      7
D7V10, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            7             10
  CLUS_2            2             30
  CLUS_3            3             10
  CLUS_4            6             26
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = C19ORF55 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF55 MUTATED        4      8      2      2
  C19ORF55 WILD-TYPE     15     45     28     22
D8V1, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                8                 45
  CLUS_3                2                 28
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF55 MUTATED        4      4      5      3
  C19ORF55 WILD-TYPE     31     26     29     23
D8V2, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                4                 31
  CLUS_2                4                 26
  CLUS_3                5                 29
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF55 MUTATED        6      2      1      1      1
  C19ORF55 WILD-TYPE     23     16     12      8     12
D8V3, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                2                 16
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF55 MUTATED        6      3      1      1      0
  C19ORF55 WILD-TYPE     26     15     11      9     10
D8V4, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                6                 26
  CLUS_2                3                 15
  CLUS_3                1                 11
  CLUS_4                1                  9
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF55 MUTATED        3      4      3      3      2
  C19ORF55 WILD-TYPE     23     16     25     22     18
D8V5, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                4                 16
  CLUS_3                3                 25
  CLUS_4                3                 22
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        8      5      2
  C19ORF55 WILD-TYPE     40     48     16
D8V6, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                8                 40
  CLUS_2                5                 48
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF55 MUTATED        5      2      2      5      1
  C19ORF55 WILD-TYPE     32     29     15     16     12
D8V7, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                5                 32
  CLUS_2                2                 29
  CLUS_3                2                 15
  CLUS_4                5                 16
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED       11      2      2
  C19ORF55 WILD-TYPE     60     25     19
D8V8, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1               11                 60
  CLUS_2                2                 25
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C19ORF55 MUTATED        3      1      1      2      4      1      3
  C19ORF55 WILD-TYPE     15      7      9      6     32     24      9
D8V9, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                2                  6
  CLUS_5                4                 32
  CLUS_6                1                 24
  CLUS_7                3                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF55 MUTATED        4      2      3      5      0      1
  C19ORF55 WILD-TYPE     13     30     10     27     16      6
D8V10, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                4                 13
  CLUS_2                2                 30
  CLUS_3                3                 10
  CLUS_4                5                 27
  CLUS_5                0                 16
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = C15ORF24 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF24 MUTATED        6      5      3      1
  C15ORF24 WILD-TYPE     13     48     27     23
D9V1, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                6                 13
  CLUS_2                5                 48
  CLUS_3                3                 27
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF24 MUTATED        4      4      4      3
  C15ORF24 WILD-TYPE     31     26     30     23
D9V2, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                4                 31
  CLUS_2                4                 26
  CLUS_3                4                 30
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF24 MUTATED        2      2      3      2      1
  C15ORF24 WILD-TYPE     27     16     10      7     12
D9V3, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                2                 16
  CLUS_3                3                 10
  CLUS_4                2                  7
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF24 MUTATED        4      1      4      0      1
  C15ORF24 WILD-TYPE     28     17      8     10      9
D9V4, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                4                 28
  CLUS_2                1                 17
  CLUS_3                4                  8
  CLUS_4                0                 10
  CLUS_5                1                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF24 MUTATED        0      2      5      5      3
  C15ORF24 WILD-TYPE     26     18     23     20     17
D9V5, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                2                 18
  CLUS_3                5                 23
  CLUS_4                5                 20
  CLUS_5                3                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED       10      5      0
  C15ORF24 WILD-TYPE     38     48     18
D9V6, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1               10                 38
  CLUS_2                5                 48
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF24 MUTATED        5      6      2      1      1
  C15ORF24 WILD-TYPE     32     25     15     20     12
D9V7, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                5                 32
  CLUS_2                6                 25
  CLUS_3                2                 15
  CLUS_4                1                 20
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED       10      4      1
  C15ORF24 WILD-TYPE     61     23     20
D9V8, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1               10                 61
  CLUS_2                4                 23
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C15ORF24 MUTATED        3      2      3      3      2      2      0
  C15ORF24 WILD-TYPE     15      6      7      5     34     23     12
D9V9, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                2                  6
  CLUS_3                3                  7
  CLUS_4                3                  5
  CLUS_5                2                 34
  CLUS_6                2                 23
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C15ORF24 MUTATED        3      2      2      7      1      0
  C15ORF24 WILD-TYPE     14     30     11     25     15      7
D9V10, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                3                 14
  CLUS_2                2                 30
  CLUS_3                2                 11
  CLUS_4                7                 25
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = QRICH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QRICH1 MUTATED        3      6      4      1
  QRICH1 WILD-TYPE     16     47     26     23
D10V1, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              3               16
  CLUS_2              6               47
  CLUS_3              4               26
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QRICH1 MUTATED        2      2      7      3
  QRICH1 WILD-TYPE     33     28     27     23
D10V2, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              7               27
  CLUS_4              3               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRICH1 MUTATED        2      2      2      1      2
  QRICH1 WILD-TYPE     27     16     11      8     11
D10V3, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              2               16
  CLUS_3              2               11
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRICH1 MUTATED        3      2      2      0      2
  QRICH1 WILD-TYPE     29     16     10     10      8
D10V4, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              2               16
  CLUS_3              2               10
  CLUS_4              0               10
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRICH1 MUTATED        2      2      4      2      4
  QRICH1 WILD-TYPE     24     18     24     23     16
D10V5, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               18
  CLUS_3              4               24
  CLUS_4              2               23
  CLUS_5              4               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        5      8      1
  QRICH1 WILD-TYPE     43     45     17
D10V6, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              5               43
  CLUS_2              8               45
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRICH1 MUTATED        4      6      1      2      1
  QRICH1 WILD-TYPE     33     25     16     19     12
D10V7, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              6               25
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED       10      2      2
  QRICH1 WILD-TYPE     61     25     19
D10V8, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1             10               61
  CLUS_2              2               25
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  QRICH1 MUTATED        1      1      2      3      3      3      1
  QRICH1 WILD-TYPE     17      7      8      5     33     22     11
D10V9, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              2                8
  CLUS_4              3                5
  CLUS_5              3               33
  CLUS_6              3               22
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  QRICH1 MUTATED        0      4      4      4      2      0
  QRICH1 WILD-TYPE     17     28      9     28     14      7
D10V10, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              4               28
  CLUS_3              4                9
  CLUS_4              4               28
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = IFT46 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT46 MUTATED        1      4      4      4
  IFT46 WILD-TYPE     18     49     26     20
D11V1, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             4              26
  CLUS_4             4              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT46 MUTATED        4      3      4      2
  IFT46 WILD-TYPE     31     27     30     24
D11V2, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             3              27
  CLUS_3             4              30
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFT46 MUTATED        4      2      0      2      2
  IFT46 WILD-TYPE     25     16     13      7     11
D11V3, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFT46 MUTATED        7      1      0      1      1
  IFT46 WILD-TYPE     25     17     12      9      9
D11V4, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             7              25
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFT46 MUTATED        3      1      3      3      2
  IFT46 WILD-TYPE     23     19     25     22     18
D11V5, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFT46 MUTATED        4      6      2
  IFT46 WILD-TYPE     44     47     16
D11V6, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             6              47
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFT46 MUTATED        5      3      2      2      0
  IFT46 WILD-TYPE     32     28     15     19     13
D11V7, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFT46 MUTATED        9      2      1
  IFT46 WILD-TYPE     62     25     20
D11V8, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             9              62
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFT46 MUTATED        0      1      2      0      5      1      3
  IFT46 WILD-TYPE     18      7      8      8     31     24      9
D11V9, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             5              31
  CLUS_6             1              24
  CLUS_7             3               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFT46 MUTATED        3      4      1      3      0      1
  IFT46 WILD-TYPE     14     28     12     29     16      6
D11V10, multiclass
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             4              28
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = ARHGAP18 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP18 MUTATED        3      3      4      2
  ARHGAP18 WILD-TYPE     16     50     26     22
D12V1, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                3                 50
  CLUS_3                4                 26
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP18 MUTATED        1      4      4      3
  ARHGAP18 WILD-TYPE     34     26     30     23
D12V2, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                4                 26
  CLUS_3                4                 30
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        2      3      1      0      0
  ARHGAP18 WILD-TYPE     27     15     12      9     13
D12V3, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                3                 15
  CLUS_3                1                 12
  CLUS_4                0                  9
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        3      3      0      0      0
  ARHGAP18 WILD-TYPE     29     15     12     10     10
D12V4, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                3                 29
  CLUS_2                3                 15
  CLUS_3                0                 12
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        0      3      5      3      1
  ARHGAP18 WILD-TYPE     26     17     23     22     19
D12V5, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 17
  CLUS_3                5                 23
  CLUS_4                3                 22
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        3      8      1
  ARHGAP18 WILD-TYPE     45     45     17
D12V6, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                8                 45
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        3      3      2      3      1
  ARHGAP18 WILD-TYPE     34     28     15     18     12
D12V7, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                3                 28
  CLUS_3                2                 15
  CLUS_4                3                 18
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        8      3      1
  ARHGAP18 WILD-TYPE     63     24     20
D12V8, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                8                 63
  CLUS_2                3                 24
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP18 MUTATED        1      2      1      2      3      2      1
  ARHGAP18 WILD-TYPE     17      6      9      6     33     23     11
D12V9, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                  6
  CLUS_3                1                  9
  CLUS_4                2                  6
  CLUS_5                3                 33
  CLUS_6                2                 23
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGAP18 MUTATED        2      4      2      3      0      1
  ARHGAP18 WILD-TYPE     15     28     11     29     16      6
D12V10, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                4                 28
  CLUS_3                2                 11
  CLUS_4                3                 29
  CLUS_5                0                 16
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = EME2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EME2 MUTATED        1      5      3      2
  EME2 WILD-TYPE     18     48     27     22
D13V1, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            5             48
  CLUS_3            3             27
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EME2 MUTATED        3      1      4      3
  EME2 WILD-TYPE     32     29     30     23
D13V2, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            4             30
  CLUS_4            3             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EME2 MUTATED        3      2      0      1      1
  EME2 WILD-TYPE     26     16     13      8     12
D13V3, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            3             26
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EME2 MUTATED        5      2      0      0      0
  EME2 WILD-TYPE     27     16     12     10     10
D13V4, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            5             27
  CLUS_2            2             16
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EME2 MUTATED        1      1      3      3      3
  EME2 WILD-TYPE     25     19     25     22     17
D13V5, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            3             25
  CLUS_4            3             22
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EME2 MUTATED        4      6      1
  EME2 WILD-TYPE     44     47     17
D13V6, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            6             47
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EME2 MUTATED        4      4      1      2      0
  EME2 WILD-TYPE     33     27     16     19     13
D13V7, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            4             27
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EME2 MUTATED        9      1      1
  EME2 WILD-TYPE     62     26     20
D13V8, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            9             62
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EME2 MUTATED        1      1      1      1      3      3      1
  EME2 WILD-TYPE     17      7      9      7     33     22     11
D13V9, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            3             22
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EME2 MUTATED        3      3      1      3      1      0
  EME2 WILD-TYPE     14     29     12     29     15      7
D13V10, multiclass
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  CLUS_1            3             14
  CLUS_2            3             29
  CLUS_3            1             12
  CLUS_4            3             29
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        5     12      3      6
  SMAD4 WILD-TYPE     14     41     27     18
D14V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              14
  CLUS_2            12              41
  CLUS_3             3              27
  CLUS_4             6              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       10      5      7      4
  SMAD4 WILD-TYPE     25     25     27     22
D14V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            10              25
  CLUS_2             5              25
  CLUS_3             7              27
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        8      2      3      5      1
  SMAD4 WILD-TYPE     21     16     10      4     12
D14V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             8              21
  CLUS_2             2              16
  CLUS_3             3              10
  CLUS_4             5               4
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED       10      3      1      4      1
  SMAD4 WILD-TYPE     22     15     11      6      9
D14V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            10              22
  CLUS_2             3              15
  CLUS_3             1              11
  CLUS_4             4               6
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        8      3      5      6      3
  SMAD4 WILD-TYPE     18     17     23     19     17
D14V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             8              18
  CLUS_2             3              17
  CLUS_3             5              23
  CLUS_4             6              19
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       10     15      0
  SMAD4 WILD-TYPE     38     38     18
D14V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            10              38
  CLUS_2            15              38
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED       10      6      4      3      2
  SMAD4 WILD-TYPE     27     25     13     18     11
D14V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            10              27
  CLUS_2             6              25
  CLUS_3             4              13
  CLUS_4             3              18
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       17      6      2
  SMAD4 WILD-TYPE     54     21     19
D14V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            17              54
  CLUS_2             6              21
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD4 MUTATED        7      4      2      0      7      5      0
  SMAD4 WILD-TYPE     11      4      8      8     29     20     12
D14V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7              11
  CLUS_2             4               4
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             7              29
  CLUS_6             5              20
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD4 MUTATED        8      4      3      8      2      0
  SMAD4 WILD-TYPE      9     28     10     24     14      7
D14V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             8               9
  CLUS_2             4              28
  CLUS_3             3              10
  CLUS_4             8              24
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = NPNT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPNT MUTATED        1      5      4      2
  NPNT WILD-TYPE     18     48     26     22
D15V1, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            1             18
  CLUS_2            5             48
  CLUS_3            4             26
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPNT MUTATED        4      3      1      4
  NPNT WILD-TYPE     31     27     33     22
D15V2, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            4             31
  CLUS_2            3             27
  CLUS_3            1             33
  CLUS_4            4             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPNT MUTATED        3      2      1      1      1
  NPNT WILD-TYPE     26     16     12      8     12
D15V3, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            3             26
  CLUS_2            2             16
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPNT MUTATED        3      2      2      1      0
  NPNT WILD-TYPE     29     16     10      9     10
D15V4, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            3             29
  CLUS_2            2             16
  CLUS_3            2             10
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPNT MUTATED        2      3      2      2      3
  NPNT WILD-TYPE     24     17     26     23     17
D15V5, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            2             24
  CLUS_2            3             17
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        5      4      3
  NPNT WILD-TYPE     43     49     15
D15V6, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            5             43
  CLUS_2            4             49
  CLUS_3            3             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPNT MUTATED        3      3      2      2      2
  NPNT WILD-TYPE     34     28     15     19     11
D15V7, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            3             34
  CLUS_2            3             28
  CLUS_3            2             15
  CLUS_4            2             19
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        4      4      4
  NPNT WILD-TYPE     67     23     17
D15V8, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            4             67
  CLUS_2            4             23
  CLUS_3            4             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NPNT MUTATED        2      0      0      1      4      4      1
  NPNT WILD-TYPE     16      8     10      7     32     21     11
D15V9, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            4             32
  CLUS_6            4             21
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NPNT MUTATED        1      2      1      3      4      1
  NPNT WILD-TYPE     16     30     12     29     12      6
D15V10, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            1             12
  CLUS_4            3             29
  CLUS_5            4             12
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = TNFSF9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF9 MUTATED        1      4      6      1
  TNFSF9 WILD-TYPE     18     49     24     23
D16V1, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              4               49
  CLUS_3              6               24
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF9 MUTATED        2      4      3      3
  TNFSF9 WILD-TYPE     33     26     31     23
D16V2, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              4               26
  CLUS_3              3               31
  CLUS_4              3               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF9 MUTATED        3      2      2      1      0
  TNFSF9 WILD-TYPE     26     16     11      8     13
D16V3, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              2               16
  CLUS_3              2               11
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF9 MUTATED        4      2      0      0      2
  TNFSF9 WILD-TYPE     28     16     12     10      8
D16V4, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              2               16
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF9 MUTATED        0      1      5      4      2
  TNFSF9 WILD-TYPE     26     19     23     21     18
D16V5, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              5               23
  CLUS_4              4               21
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        4      6      2
  TNFSF9 WILD-TYPE     44     47     16
D16V6, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              6               47
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF9 MUTATED        3      4      2      2      1
  TNFSF9 WILD-TYPE     34     27     15     19     12
D16V7, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              4               27
  CLUS_3              2               15
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        7      3      2
  TNFSF9 WILD-TYPE     64     24     19
D16V8, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              3               24
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNFSF9 MUTATED        2      0      3      0      3      4      0
  TNFSF9 WILD-TYPE     16      8      7      8     33     21     12
D16V9, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              3                7
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              4               21
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFSF9 MUTATED        0      5      0      4      3      0
  TNFSF9 WILD-TYPE     17     27     13     28     13      7
D16V10, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              5               27
  CLUS_3              0               13
  CLUS_4              4               28
  CLUS_5              3               13
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = SRP14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRP14 MUTATED        1      6      1      1
  SRP14 WILD-TYPE     18     47     29     23
D17V1, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             6              47
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRP14 MUTATED        2      1      3      3
  SRP14 WILD-TYPE     33     29     31     23
D17V2, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP14 MUTATED        2      2      0      1      1
  SRP14 WILD-TYPE     27     16     13      8     12
D17V3, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP14 MUTATED        2      2      0      1      1
  SRP14 WILD-TYPE     30     16     12      9      9
D17V4, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP14 MUTATED        3      2      1      1      2
  SRP14 WILD-TYPE     23     18     27     24     18
D17V5, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        4      4      1
  SRP14 WILD-TYPE     44     49     17
D17V6, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP14 MUTATED        2      3      1      1      2
  SRP14 WILD-TYPE     35     28     16     20     11
D17V7, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        6      2      1
  SRP14 WILD-TYPE     65     25     20
D17V8, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRP14 MUTATED        2      1      1      1      2      2      0
  SRP14 WILD-TYPE     16      7      9      7     34     23     12
D17V9, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRP14 MUTATED        2      2      2      2      1      0
  SRP14 WILD-TYPE     15     30     11     30     15      7
D17V10, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = SORBS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        8      4      2      3
  SORBS2 WILD-TYPE     11     49     28     21
D18V1, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              8               11
  CLUS_2              4               49
  CLUS_3              2               28
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        4      2      6      5
  SORBS2 WILD-TYPE     31     28     28     21
D18V2, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              2               28
  CLUS_3              6               28
  CLUS_4              5               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        5      4      1      2      0
  SORBS2 WILD-TYPE     24     14     12      7     13
D18V3, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              5               24
  CLUS_2              4               14
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        6      4      1      1      0
  SORBS2 WILD-TYPE     26     14     11      9     10
D18V4, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              6               26
  CLUS_2              4               14
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        3      2      4      6      1
  SORBS2 WILD-TYPE     23     18     24     19     19
D18V5, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              2               18
  CLUS_3              4               24
  CLUS_4              6               19
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        7      8      1
  SORBS2 WILD-TYPE     41     45     17
D18V6, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              7               41
  CLUS_2              8               45
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        6      2      3      3      2
  SORBS2 WILD-TYPE     31     29     14     18     11
D18V7, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              6               31
  CLUS_2              2               29
  CLUS_3              3               14
  CLUS_4              3               18
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED       12      3      1
  SORBS2 WILD-TYPE     59     24     20
D18V8, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1             12               59
  CLUS_2              3               24
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SORBS2 MUTATED        2      1      2      1      6      3      1
  SORBS2 WILD-TYPE     16      7      8      7     30     22     11
D18V9, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1                7
  CLUS_3              2                8
  CLUS_4              1                7
  CLUS_5              6               30
  CLUS_6              3               22
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SORBS2 MUTATED        3      4      1      7      1      0
  SORBS2 WILD-TYPE     14     28     12     25     15      7
D18V10, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              4               28
  CLUS_3              1               12
  CLUS_4              7               25
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = ERF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        2      6      4      1
  ERF WILD-TYPE     17     47     26     23
D19V1, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2            17
  CLUS_2           6            47
  CLUS_3           4            26
  CLUS_4           1            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        7      2      2      2
  ERF WILD-TYPE     28     28     32     24
D19V2, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           7            28
  CLUS_2           2            28
  CLUS_3           2            32
  CLUS_4           2            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        3      2      0      2      0
  ERF WILD-TYPE     26     16     13      7     13
D19V3, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           3            26
  CLUS_2           2            16
  CLUS_3           0            13
  CLUS_4           2             7
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        4      2      0      1      0
  ERF WILD-TYPE     28     16     12      9     10
D19V4, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           4            28
  CLUS_2           2            16
  CLUS_3           0            12
  CLUS_4           1             9
  CLUS_5           0            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        2      0      4      5      2
  ERF WILD-TYPE     24     20     24     20     18
D19V5, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2            24
  CLUS_2           0            20
  CLUS_3           4            24
  CLUS_4           5            20
  CLUS_5           2            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        5      7      1
  ERF WILD-TYPE     43     46     17
D19V6, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           5            43
  CLUS_2           7            46
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        5      5      2      1      0
  ERF WILD-TYPE     32     26     15     20     13
D19V7, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           5            32
  CLUS_2           5            26
  CLUS_3           2            15
  CLUS_4           1            20
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED       10      2      1
  ERF WILD-TYPE     61     25     20
D19V8, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1          10            61
  CLUS_2           2            25
  CLUS_3           1            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERF MUTATED        0      2      2      2      4      3      0
  ERF WILD-TYPE     18      6      8      6     32     22     12
D19V9, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           0            18
  CLUS_2           2             6
  CLUS_3           2             8
  CLUS_4           2             6
  CLUS_5           4            32
  CLUS_6           3            22
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERF MUTATED        0      6      1      5      1      0
  ERF WILD-TYPE     17     26     12     27     15      7
D19V10, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           0            17
  CLUS_2           6            26
  CLUS_3           1            12
  CLUS_4           5            27
  CLUS_5           1            15
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = MED9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        2      1      1      3
  MED9 WILD-TYPE     17     52     29     21
D20V1, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        2      2      1      2
  MED9 WILD-TYPE     33     28     33     24
D20V2, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED9 MUTATED        1      0      1      1      0
  MED9 WILD-TYPE     28     18     12      8     13
D20V3, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED9 MUTATED        3      0      0      0      0
  MED9 WILD-TYPE     29     18     12     10     10
D20V4, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED9 MUTATED        1      1      1      3      1
  MED9 WILD-TYPE     25     19     27     22     19
D20V5, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            3             22
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        4      1      2
  MED9 WILD-TYPE     44     52     16
D20V6, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            1             52
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED9 MUTATED        2      0      2      1      2
  MED9 WILD-TYPE     35     31     15     20     11
D20V7, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            2             15
  CLUS_4            1             20
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        3      2      2
  MED9 WILD-TYPE     68     25     19
D20V8, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED9 MUTATED        2      1      1      1      0      2      0
  MED9 WILD-TYPE     16      7      9      7     36     23     12
D20V9, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            0             36
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED9 MUTATED        2      0      0      3      2      0
  MED9 WILD-TYPE     15     32     13     29     14      7
D20V10, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = BHLHB9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHB9 MUTATED        3      5      4      0
  BHLHB9 WILD-TYPE     16     48     26     24
D21V1, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              3               16
  CLUS_2              5               48
  CLUS_3              4               26
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHB9 MUTATED        3      5      3      1
  BHLHB9 WILD-TYPE     32     25     31     25
D21V2, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              5               25
  CLUS_3              3               31
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BHLHB9 MUTATED        0      1      2      0      0
  BHLHB9 WILD-TYPE     29     17     11      9     13
D21V3, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              2               11
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BHLHB9 MUTATED        0      1      1      0      1
  BHLHB9 WILD-TYPE     32     17     11     10      9
D21V4, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              0               32
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BHLHB9 MUTATED        3      4      3      1      1
  BHLHB9 WILD-TYPE     23     16     25     24     19
D21V5, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              4               16
  CLUS_3              3               25
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        4      4      4
  BHLHB9 WILD-TYPE     44     49     14
D21V6, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              4               49
  CLUS_3              4               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BHLHB9 MUTATED        5      1      1      3      2
  BHLHB9 WILD-TYPE     32     30     16     18     11
D21V7, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              3               18
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        7      2      3
  BHLHB9 WILD-TYPE     64     25     18
D21V8, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              2               25
  CLUS_3              3               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BHLHB9 MUTATED        2      1      0      1      3      1      3
  BHLHB9 WILD-TYPE     16      7     10      7     33     24      9
D21V9, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              3               33
  CLUS_6              1               24
  CLUS_7              3                9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BHLHB9 MUTATED        2      2      1      2      1      3
  BHLHB9 WILD-TYPE     15     30     12     30     15      4
D21V10, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              3                4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = ZNF185 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF185 MUTATED        0      8      2      0
  ZNF185 WILD-TYPE     19     45     28     24
D22V1, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              8               45
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF185 MUTATED        2      3      5      0
  ZNF185 WILD-TYPE     33     27     29     26
D22V2, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              3               27
  CLUS_3              5               29
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF185 MUTATED        3      3      0      0      0
  ZNF185 WILD-TYPE     26     15     13      9     13
D22V3, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              3               15
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF185 MUTATED        2      3      0      1      0
  ZNF185 WILD-TYPE     30     15     12      9     10
D22V4, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              3               15
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF185 MUTATED        5      0      1      4      0
  ZNF185 WILD-TYPE     21     20     27     21     20
D22V5, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              5               21
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              4               21
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF185 MUTATED        6      4      0
  ZNF185 WILD-TYPE     42     49     18
D22V6, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              6               42
  CLUS_2              4               49
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF185 MUTATED        4      0      4      2      0
  ZNF185 WILD-TYPE     33     31     13     19     13
D22V7, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              0               31
  CLUS_3              4               13
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF185 MUTATED        5      5      0
  ZNF185 WILD-TYPE     66     22     21
D22V8, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              5               22
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF185 MUTATED        4      0      1      0      4      1      0
  ZNF185 WILD-TYPE     14      8      9      8     32     24     12
D22V9, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              4               14
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              4               32
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF185 MUTATED        2      2      1      5      0      0
  ZNF185 WILD-TYPE     15     30     12     27     16      7
D22V10, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              5               27
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = IRX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX4 MUTATED        2      3      3      2
  IRX4 WILD-TYPE     17     50     27     22
D23V1, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            3             50
  CLUS_3            3             27
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX4 MUTATED        4      1      3      2
  IRX4 WILD-TYPE     31     29     31     24
D23V2, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            1             29
  CLUS_3            3             31
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX4 MUTATED        2      2      0      0      1
  IRX4 WILD-TYPE     27     16     13      9     12
D23V3, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            0              9
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX4 MUTATED        2      1      0      1      1
  IRX4 WILD-TYPE     30     17     12      9      9
D23V4, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX4 MUTATED        4      1      2      1      2
  IRX4 WILD-TYPE     22     19     26     24     18
D23V5, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            4             22
  CLUS_2            1             19
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        3      5      2
  IRX4 WILD-TYPE     45     48     16
D23V6, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            5             48
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX4 MUTATED        4      1      1      3      1
  IRX4 WILD-TYPE     33     30     16     18     12
D23V7, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            3             18
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        7      1      2
  IRX4 WILD-TYPE     64     26     19
D23V8, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            7             64
  CLUS_2            1             26
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRX4 MUTATED        1      1      0      1      4      2      0
  IRX4 WILD-TYPE     17      7     10      7     32     23     12
D23V9, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            4             32
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRX4 MUTATED        1      4      1      1      2      0
  IRX4 WILD-TYPE     16     28     12     31     14      7
D23V10, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            4             28
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = ZMIZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        3      3      4      3
  ZMIZ1 WILD-TYPE     16     50     26     21
D24V1, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             3              50
  CLUS_3             4              26
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      2      4      5
  ZMIZ1 WILD-TYPE     33     28     30     21
D24V2, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             4              30
  CLUS_4             5              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        3      4      1      2      1
  ZMIZ1 WILD-TYPE     26     14     12      7     12
D24V3, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             4              14
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        4      5      0      1      1
  ZMIZ1 WILD-TYPE     28     13     12      9      9
D24V4, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             5              13
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        1      2      5      2      3
  ZMIZ1 WILD-TYPE     25     18     23     23     17
D24V5, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              18
  CLUS_3             5              23
  CLUS_4             2              23
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        3     10      0
  ZMIZ1 WILD-TYPE     45     43     18
D24V6, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2            10              43
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        3      6      0      2      2
  ZMIZ1 WILD-TYPE     34     25     17     19     11
D24V7, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             6              25
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED       11      2      0
  ZMIZ1 WILD-TYPE     60     25     21
D24V8, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1            11              60
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMIZ1 MUTATED        1      2      2      3      4      1      0
  ZMIZ1 WILD-TYPE     17      6      8      5     32     24     12
D24V9, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2               6
  CLUS_3             2               8
  CLUS_4             3               5
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMIZ1 MUTATED        1      5      3      3      1      0
  ZMIZ1 WILD-TYPE     16     27     10     29     15      7
D24V10, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             5              27
  CLUS_3             3              10
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = EDC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDC4 MUTATED        4      6      5      1
  EDC4 WILD-TYPE     15     47     25     23
D25V1, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            4             15
  CLUS_2            6             47
  CLUS_3            5             25
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDC4 MUTATED        9      3      0      4
  EDC4 WILD-TYPE     26     27     34     22
D25V2, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            9             26
  CLUS_2            3             27
  CLUS_3            0             34
  CLUS_4            4             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDC4 MUTATED        4      3      3      1      1
  EDC4 WILD-TYPE     25     15     10      8     12
D25V3, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            4             25
  CLUS_2            3             15
  CLUS_3            3             10
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDC4 MUTATED        7      3      1      0      1
  EDC4 WILD-TYPE     25     15     11     10      9
D25V4, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            7             25
  CLUS_2            3             15
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDC4 MUTATED        3      1      2      6      3
  EDC4 WILD-TYPE     23     19     26     19     17
D25V5, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            1             19
  CLUS_3            2             26
  CLUS_4            6             19
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        7      8      0
  EDC4 WILD-TYPE     41     45     18
D25V6, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            7             41
  CLUS_2            8             45
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDC4 MUTATED        4      4      5      2      0
  EDC4 WILD-TYPE     33     27     12     19     13
D25V7, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            4             27
  CLUS_3            5             12
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED       10      5      0
  EDC4 WILD-TYPE     61     22     21
D25V8, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1           10             61
  CLUS_2            5             22
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EDC4 MUTATED        4      3      1      2      2      2      1
  EDC4 WILD-TYPE     14      5      9      6     34     23     11
D25V9, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            4             14
  CLUS_2            3              5
  CLUS_3            1              9
  CLUS_4            2              6
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EDC4 MUTATED        1      3      3      7      1      0
  EDC4 WILD-TYPE     16     29     10     25     15      7
D25V10, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            3             29
  CLUS_3            3             10
  CLUS_4            7             25
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = CCDC135 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        3      5      4      1
  CCDC135 WILD-TYPE     16     48     26     23
D26V1, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3                16
  CLUS_2               5                48
  CLUS_3               4                26
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        5      3      4      1
  CCDC135 WILD-TYPE     30     27     30     25
D26V2, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               5                30
  CLUS_2               3                27
  CLUS_3               4                30
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC135 MUTATED        3      0      1      2      0
  CCDC135 WILD-TYPE     26     18     12      7     13
D26V3, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                18
  CLUS_3               1                12
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC135 MUTATED        3      0      1      2      0
  CCDC135 WILD-TYPE     29     18     11      8     10
D26V4, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               0                18
  CLUS_3               1                11
  CLUS_4               2                 8
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC135 MUTATED        4      1      2      5      1
  CCDC135 WILD-TYPE     22     19     26     20     19
D26V5, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               4                22
  CLUS_2               1                19
  CLUS_3               2                26
  CLUS_4               5                20
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        6      7      0
  CCDC135 WILD-TYPE     42     46     18
D26V6, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               6                42
  CLUS_2               7                46
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC135 MUTATED        3      3      3      4      0
  CCDC135 WILD-TYPE     34     28     14     17     13
D26V7, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               3                28
  CLUS_3               3                14
  CLUS_4               4                17
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        9      4      0
  CCDC135 WILD-TYPE     62     23     21
D26V8, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               9                62
  CLUS_2               4                23
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC135 MUTATED        1      1      4      1      3      1      1
  CCDC135 WILD-TYPE     17      7      6      7     33     24     11
D26V9, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               4                 6
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC135 MUTATED        2      3      2      5      0      0
  CCDC135 WILD-TYPE     15     29     11     27     16      7
D26V10, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               3                29
  CLUS_3               2                11
  CLUS_4               5                27
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = APP MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APP MUTATED        4      4      3      1
  APP WILD-TYPE     15     49     27     23
D27V1, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           4            15
  CLUS_2           4            49
  CLUS_3           3            27
  CLUS_4           1            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APP MUTATED        3      1      3      5
  APP WILD-TYPE     32     29     31     21
D27V2, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           3            32
  CLUS_2           1            29
  CLUS_3           3            31
  CLUS_4           5            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APP MUTATED        3      2      1      1      2
  APP WILD-TYPE     26     16     12      8     11
D27V3, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           3            26
  CLUS_2           2            16
  CLUS_3           1            12
  CLUS_4           1             8
  CLUS_5           2            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APP MUTATED        4      2      2      0      1
  APP WILD-TYPE     28     16     10     10      9
D27V4, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           4            28
  CLUS_2           2            16
  CLUS_3           2            10
  CLUS_4           0            10
  CLUS_5           1             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APP MUTATED        2      1      3      1      4
  APP WILD-TYPE     24     19     25     24     16
D27V5, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           2            24
  CLUS_2           1            19
  CLUS_3           3            25
  CLUS_4           1            24
  CLUS_5           4            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APP MUTATED        3      7      1
  APP WILD-TYPE     45     46     17
D27V6, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           3            45
  CLUS_2           7            46
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APP MUTATED        4      4      0      1      2
  APP WILD-TYPE     33     27     17     20     11
D27V7, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           4            33
  CLUS_2           4            27
  CLUS_3           0            17
  CLUS_4           1            20
  CLUS_5           2            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APP MUTATED        8      1      2
  APP WILD-TYPE     63     26     19
D27V8, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           8            63
  CLUS_2           1            26
  CLUS_3           2            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APP MUTATED        0      0      2      3      4      2      0
  APP WILD-TYPE     18      8      8      5     32     23     12
D27V9, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           2             8
  CLUS_4           3             5
  CLUS_5           4            32
  CLUS_6           2            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APP MUTATED        0      5      2      1      3      0
  APP WILD-TYPE     17     27     11     31     13      7
D27V10, multiclass
        clus
vv       APP MUTATED APP WILD-TYPE
  CLUS_1           0            17
  CLUS_2           5            27
  CLUS_3           2            11
  CLUS_4           1            31
  CLUS_5           3            13
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = TMC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC4 MUTATED        2     10      5      3
  TMC4 WILD-TYPE     17     43     25     21
D28V1, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            2             17
  CLUS_2           10             43
  CLUS_3            5             25
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC4 MUTATED        5      4      7      4
  TMC4 WILD-TYPE     30     26     27     22
D28V2, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            5             30
  CLUS_2            4             26
  CLUS_3            7             27
  CLUS_4            4             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        1      5      1      2      2
  TMC4 WILD-TYPE     28     13     12      7     11
D28V3, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            5             13
  CLUS_3            1             12
  CLUS_4            2              7
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        3      5      1      0      2
  TMC4 WILD-TYPE     29     13     11     10      8
D28V4, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            5             13
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        2      3      7      5      2
  TMC4 WILD-TYPE     24     17     21     20     18
D28V5, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            3             17
  CLUS_3            7             21
  CLUS_4            5             20
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        9     10      0
  TMC4 WILD-TYPE     39     43     18
D28V6, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            9             39
  CLUS_2           10             43
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        5      7      1      4      2
  TMC4 WILD-TYPE     32     24     16     17     11
D28V7, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            5             32
  CLUS_2            7             24
  CLUS_3            1             16
  CLUS_4            4             17
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED       13      5      1
  TMC4 WILD-TYPE     58     22     20
D28V8, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1           13             58
  CLUS_2            5             22
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMC4 MUTATED        3      1      5      2      3      4      0
  TMC4 WILD-TYPE     15      7      5      6     33     21     12
D28V9, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            1              7
  CLUS_3            5              5
  CLUS_4            2              6
  CLUS_5            3             33
  CLUS_6            4             21
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMC4 MUTATED        2      8      1      6      1      0
  TMC4 WILD-TYPE     15     24     12     26     15      7
D28V10, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            8             24
  CLUS_3            1             12
  CLUS_4            6             26
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = PHF13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF13 MUTATED        2      2      4      1
  PHF13 WILD-TYPE     17     51     26     23
D29V1, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             2              51
  CLUS_3             4              26
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF13 MUTATED        2      4      3      0
  PHF13 WILD-TYPE     33     26     31     26
D29V2, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             4              26
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF13 MUTATED        1      1      1      1      1
  PHF13 WILD-TYPE     28     17     12      8     12
D29V3, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF13 MUTATED        3      0      0      0      2
  PHF13 WILD-TYPE     29     18     12     10      8
D29V4, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF13 MUTATED        1      4      3      1      0
  PHF13 WILD-TYPE     25     16     25     24     20
D29V5, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              16
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        3      3      3
  PHF13 WILD-TYPE     45     50     15
D29V6, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF13 MUTATED        3      1      0      2      3
  PHF13 WILD-TYPE     34     30     17     19     10
D29V7, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             3              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        5      2      2
  PHF13 WILD-TYPE     66     25     19
D29V8, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             2              25
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF13 MUTATED        1      1      0      0      2      3      2
  PHF13 WILD-TYPE     17      7     10      8     34     22     10
D29V9, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             3              22
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF13 MUTATED        0      4      0      2      1      2
  PHF13 WILD-TYPE     17     28     13     30     15      5
D29V10, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             4              28
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             2               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = B4GALT2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT2 MUTATED        1      5      1      3
  B4GALT2 WILD-TYPE     18     48     29     21
D30V1, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               5                48
  CLUS_3               1                29
  CLUS_4               3                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT2 MUTATED        3      2      4      1
  B4GALT2 WILD-TYPE     32     28     30     25
D30V2, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               2                28
  CLUS_3               4                30
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT2 MUTATED        2      1      1      0      1
  B4GALT2 WILD-TYPE     27     17     12      9     12
D30V3, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               0                 9
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT2 MUTATED        3      1      0      0      1
  B4GALT2 WILD-TYPE     29     17     12     10      9
D30V4, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT2 MUTATED        3      0      3      2      2
  B4GALT2 WILD-TYPE     23     20     25     23     18
D30V5, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               0                20
  CLUS_3               3                25
  CLUS_4               2                23
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT2 MUTATED        5      5      0
  B4GALT2 WILD-TYPE     43     48     18
D30V6, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               5                43
  CLUS_2               5                48
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT2 MUTATED        3      2      2      3      0
  B4GALT2 WILD-TYPE     34     29     15     18     13
D30V7, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               2                29
  CLUS_3               2                15
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT2 MUTATED        8      2      0
  B4GALT2 WILD-TYPE     63     25     21
D30V8, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               8                63
  CLUS_2               2                25
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B4GALT2 MUTATED        1      1      2      1      3      1      0
  B4GALT2 WILD-TYPE     17      7      8      7     33     24     12
D30V9, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               2                 8
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B4GALT2 MUTATED        2      3      2      2      0      0
  B4GALT2 WILD-TYPE     15     29     11     30     16      7
D30V10, multiclass
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               3                29
  CLUS_3               2                11
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = GAGE2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        0      3      1      2
  GAGE2A WILD-TYPE     19     50     29     22
D31V1, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      0      2      3
  GAGE2A WILD-TYPE     34     30     32     23
D31V2, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              3               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        2      1      1      0      0
  GAGE2A WILD-TYPE     27     17     12      9     13
D31V3, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        1      1      1      1      0
  GAGE2A WILD-TYPE     31     17     11      9     10
D31V4, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        1      2      1      0      2
  GAGE2A WILD-TYPE     25     18     27     25     18
D31V5, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              0               25
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      3      2
  GAGE2A WILD-TYPE     47     50     16
D31V6, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               47
  CLUS_2              3               50
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        0      1      1      2      2
  GAGE2A WILD-TYPE     37     30     16     19     11
D31V7, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        3      1      2
  GAGE2A WILD-TYPE     68     26     19
D31V8, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAGE2A MUTATED        1      0      0      2      2      1      0
  GAGE2A WILD-TYPE     17      8     10      6     34     24     12
D31V9, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              2                6
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAGE2A MUTATED        0      0      3      1      2      0
  GAGE2A WILD-TYPE     17     32     10     31     14      7
D31V10, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              3               10
  CLUS_4              1               31
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = YIPF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF2 MUTATED        3      5      2      1
  YIPF2 WILD-TYPE     16     48     28     23
D32V1, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             5              48
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF2 MUTATED        4      2      4      1
  YIPF2 WILD-TYPE     31     28     30     25
D32V2, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        3      2      1      2      0
  YIPF2 WILD-TYPE     26     16     12      7     13
D32V3, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        4      2      1      1      0
  YIPF2 WILD-TYPE     28     16     11      9     10
D32V4, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        1      1      3      4      2
  YIPF2 WILD-TYPE     25     19     25     21     18
D32V5, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             4              21
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF2 MUTATED        6      5      0
  YIPF2 WILD-TYPE     42     48     18
D32V6, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        3      4      2      1      1
  YIPF2 WILD-TYPE     34     27     15     20     12
D32V7, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             4              27
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF2 MUTATED        7      3      1
  YIPF2 WILD-TYPE     64     24     20
D32V8, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YIPF2 MUTATED        1      1      1      2      2      3      1
  YIPF2 WILD-TYPE     17      7      9      6     34     22     11
D32V9, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             2              34
  CLUS_6             3              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YIPF2 MUTATED        1      3      2      4      1      0
  YIPF2 WILD-TYPE     16     29     11     28     15      7
D32V10, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             2              11
  CLUS_4             4              28
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = MED15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        2      4      3      3
  MED15 WILD-TYPE     17     49     27     21
D33V1, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             4              49
  CLUS_3             3              27
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        3      2      3      4
  MED15 WILD-TYPE     32     28     31     22
D33V2, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             3              31
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        3      0      2      2      0
  MED15 WILD-TYPE     26     18     11      7     13
D33V3, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        4      0      0      1      2
  MED15 WILD-TYPE     28     18     12      9      8
D33V4, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        1      3      2      3      3
  MED15 WILD-TYPE     25     17     26     22     17
D33V5, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              17
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        5      6      1
  MED15 WILD-TYPE     43     47     17
D33V6, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             6              47
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        4      3      1      2      2
  MED15 WILD-TYPE     33     28     16     19     11
D33V7, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        7      2      3
  MED15 WILD-TYPE     64     25     18
D33V8, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             2              25
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED15 MUTATED        0      1      1      1      4      5      0
  MED15 WILD-TYPE     18      7      9      7     32     20     12
D33V9, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             4              32
  CLUS_6             5              20
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED15 MUTATED        2      2      2      3      3      0
  MED15 WILD-TYPE     15     30     11     29     13      7
D33V10, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             3              13
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = MBD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD3 MUTATED        0      3      3      3
  MBD3 WILD-TYPE     19     50     27     21
D34V1, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            3             27
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD3 MUTATED        4      2      1      2
  MBD3 WILD-TYPE     31     28     33     24
D34V2, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD3 MUTATED        1      0      0      2      2
  MBD3 WILD-TYPE     28     18     13      7     11
D34V3, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD3 MUTATED        4      0      0      0      1
  MBD3 WILD-TYPE     28     18     12     10      9
D34V4, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD3 MUTATED        1      2      3      2      1
  MBD3 WILD-TYPE     25     18     25     23     19
D34V5, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             18
  CLUS_3            3             25
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        3      4      2
  MBD3 WILD-TYPE     45     49     16
D34V6, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            4             49
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD3 MUTATED        4      1      1      1      2
  MBD3 WILD-TYPE     33     30     16     20     11
D34V7, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        6      2      1
  MBD3 WILD-TYPE     65     25     20
D34V8, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            6             65
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MBD3 MUTATED        1      0      2      0      4      0      2
  MBD3 WILD-TYPE     17      8      8      8     32     25     10
D34V9, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            0              8
  CLUS_5            4             32
  CLUS_6            0             25
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBD3 MUTATED        2      4      0      3      0      0
  MBD3 WILD-TYPE     15     28     13     29     16      7
D34V10, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            4             28
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = WWTR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        0      5      5      2
  WWTR1 WILD-TYPE     19     48     25     22
D35V1, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             5              48
  CLUS_3             5              25
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        4      0      4      4
  WWTR1 WILD-TYPE     31     30     30     22
D35V2, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             4              30
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWTR1 MUTATED        1      1      3      2      4
  WWTR1 WILD-TYPE     28     17     10      7      9
D35V3, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             3              10
  CLUS_4             2               7
  CLUS_5             4               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWTR1 MUTATED        4      0      2      1      4
  WWTR1 WILD-TYPE     28     18     10      9      6
D35V4, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             1               9
  CLUS_5             4               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWTR1 MUTATED        2      0      4      2      4
  WWTR1 WILD-TYPE     24     20     24     23     16
D35V5, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             4              24
  CLUS_4             2              23
  CLUS_5             4              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WWTR1 MUTATED        7      4      1
  WWTR1 WILD-TYPE     41     49     17
D35V6, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             7              41
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWTR1 MUTATED        1      6      0      5      0
  WWTR1 WILD-TYPE     36     25     17     16     13
D35V7, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             6              25
  CLUS_3             0              17
  CLUS_4             5              16
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WWTR1 MUTATED       10      1      1
  WWTR1 WILD-TYPE     61     26     20
D35V8, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1            10              61
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WWTR1 MUTATED        2      0      2      1      2      3      1
  WWTR1 WILD-TYPE     16      8      8      7     34     22     11
D35V9, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             3              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WWTR1 MUTATED        1      4      1      3      2      0
  WWTR1 WILD-TYPE     16     28     12     29     14      7
D35V10, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             4              28
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = FAM63B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM63B MUTATED        2      3      4      2
  FAM63B WILD-TYPE     17     50     26     22
D36V1, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              2               17
  CLUS_2              3               50
  CLUS_3              4               26
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM63B MUTATED        3      4      1      3
  FAM63B WILD-TYPE     32     26     33     23
D36V2, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              3               32
  CLUS_2              4               26
  CLUS_3              1               33
  CLUS_4              3               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM63B MUTATED        3      1      1      1      0
  FAM63B WILD-TYPE     26     17     12      8     13
D36V3, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              3               26
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM63B MUTATED        4      1      0      0      1
  FAM63B WILD-TYPE     28     17     12     10      9
D36V4, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              4               28
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM63B MUTATED        1      2      0      5      3
  FAM63B WILD-TYPE     25     18     28     20     17
D36V5, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              0               28
  CLUS_4              5               20
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM63B MUTATED        6      3      2
  FAM63B WILD-TYPE     42     50     16
D36V6, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              6               42
  CLUS_2              3               50
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM63B MUTATED        2      2      4      1      2
  FAM63B WILD-TYPE     35     29     13     20     11
D36V7, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              4               13
  CLUS_4              1               20
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM63B MUTATED        4      6      1
  FAM63B WILD-TYPE     67     21     20
D36V8, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              4               67
  CLUS_2              6               21
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM63B MUTATED        3      0      1      1      1      3      2
  FAM63B WILD-TYPE     15      8      9      7     35     22     10
D36V9, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              3               15
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              3               22
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM63B MUTATED        0      2      0      5      3      1
  FAM63B WILD-TYPE     17     30     13     27     13      6
D36V10, multiclass
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              5               27
  CLUS_5              3               13
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = C14ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        2      6      4      1
  C14ORF43 WILD-TYPE     17     47     26     23
D37V1, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                6                 47
  CLUS_3                4                 26
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        5      3      3      2
  C14ORF43 WILD-TYPE     30     27     31     24
D37V2, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                5                 30
  CLUS_2                3                 27
  CLUS_3                3                 31
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        6      1      0      1      2
  C14ORF43 WILD-TYPE     23     17     13      8     11
D37V3, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                1                 17
  CLUS_3                0                 13
  CLUS_4                1                  8
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        6      2      1      1      0
  C14ORF43 WILD-TYPE     26     16     11      9     10
D37V4, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                6                 26
  CLUS_2                2                 16
  CLUS_3                1                 11
  CLUS_4                1                  9
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        3      2      2      4      2
  C14ORF43 WILD-TYPE     23     18     26     21     18
D37V5, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                2                 18
  CLUS_3                2                 26
  CLUS_4                4                 21
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        7      6      0
  C14ORF43 WILD-TYPE     41     47     18
D37V6, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                7                 41
  CLUS_2                6                 47
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        6      2      2      3      0
  C14ORF43 WILD-TYPE     31     29     15     18     13
D37V7, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                6                 31
  CLUS_2                2                 29
  CLUS_3                2                 15
  CLUS_4                3                 18
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED       10      3      0
  C14ORF43 WILD-TYPE     61     24     21
D37V8, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1               10                 61
  CLUS_2                3                 24
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF43 MUTATED        3      0      1      2      4      1      1
  C14ORF43 WILD-TYPE     15      8      9      6     32     24     11
D37V9, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                2                  6
  CLUS_5                4                 32
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF43 MUTATED        2      4      3      3      0      0
  C14ORF43 WILD-TYPE     15     28     10     29     16      7
D37V10, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                4                 28
  CLUS_3                3                 10
  CLUS_4                3                 29
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = ERCC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED        1      1      6      1
  ERCC3 WILD-TYPE     18     52     24     23
D38V1, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             6              24
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED        2      3      1      3
  ERCC3 WILD-TYPE     33     27     33     23
D38V2, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              27
  CLUS_3             1              33
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC3 MUTATED        1      2      0      1      2
  ERCC3 WILD-TYPE     28     16     13      8     11
D38V3, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC3 MUTATED        3      2      0      0      1
  ERCC3 WILD-TYPE     29     16     12     10      9
D38V4, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC3 MUTATED        0      1      1      5      2
  ERCC3 WILD-TYPE     26     19     27     20     18
D38V5, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             5              20
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC3 MUTATED        6      2      1
  ERCC3 WILD-TYPE     42     51     17
D38V6, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC3 MUTATED        1      3      3      2      0
  ERCC3 WILD-TYPE     36     28     14     19     13
D38V7, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             3              14
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC3 MUTATED        5      4      0
  ERCC3 WILD-TYPE     66     23     21
D38V8, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             4              23
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERCC3 MUTATED        2      1      2      1      0      2      1
  ERCC3 WILD-TYPE     16      7      8      7     36     23     11
D38V9, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERCC3 MUTATED        2      1      0      5      1      0
  ERCC3 WILD-TYPE     15     31     13     27     15      7
D38V10, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             5              27
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = MYH10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH10 MUTATED        2      8      4      0
  MYH10 WILD-TYPE     17     45     26     24
D39V1, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             8              45
  CLUS_3             4              26
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH10 MUTATED        5      4      2      3
  MYH10 WILD-TYPE     30     26     32     23
D39V2, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             4              26
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH10 MUTATED        1      1      1      2      2
  MYH10 WILD-TYPE     28     17     12      7     11
D39V3, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH10 MUTATED        2      1      1      1      2
  MYH10 WILD-TYPE     30     17     11      9      8
D39V4, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH10 MUTATED        1      3      3      4      3
  MYH10 WILD-TYPE     25     17     25     21     17
D39V5, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              17
  CLUS_3             3              25
  CLUS_4             4              21
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH10 MUTATED        9      3      2
  MYH10 WILD-TYPE     39     50     16
D39V6, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             9              39
  CLUS_2             3              50
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH10 MUTATED        3      4      2      4      1
  MYH10 WILD-TYPE     34     27     15     17     12
D39V7, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             4              27
  CLUS_3             2              15
  CLUS_4             4              17
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH10 MUTATED        8      3      3
  MYH10 WILD-TYPE     63     24     18
D39V8, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             3              24
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH10 MUTATED        2      1      2      1      3      4      1
  MYH10 WILD-TYPE     16      7      8      7     33     21     11
D39V9, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             3              33
  CLUS_6             4              21
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYH10 MUTATED        2      3      1      5      2      1
  MYH10 WILD-TYPE     15     29     12     27     14      6
D39V10, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             5              27
  CLUS_5             2              14
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = ZMYM5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM5 MUTATED        2      8      1      2
  ZMYM5 WILD-TYPE     17     45     29     22
D40V1, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             8              45
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM5 MUTATED        2      1      9      1
  ZMYM5 WILD-TYPE     33     29     25     25
D40V2, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             9              25
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM5 MUTATED        2      2      1      2      2
  ZMYM5 WILD-TYPE     27     16     12      7     11
D40V3, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM5 MUTATED        2      2      2      2      1
  ZMYM5 WILD-TYPE     30     16     10      8      9
D40V4, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             2              10
  CLUS_4             2               8
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM5 MUTATED        4      3      5      1      0
  ZMYM5 WILD-TYPE     22     17     23     24     20
D40V5, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             3              17
  CLUS_3             5              23
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM5 MUTATED        5      7      1
  ZMYM5 WILD-TYPE     43     46     17
D40V6, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             7              46
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM5 MUTATED        7      1      1      4      0
  ZMYM5 WILD-TYPE     30     30     16     17     13
D40V7, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             7              30
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             4              17
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM5 MUTATED       11      1      1
  ZMYM5 WILD-TYPE     60     26     20
D40V8, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1            11              60
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYM5 MUTATED        1      1      2      0      6      2      1
  ZMYM5 WILD-TYPE     17      7      8      8     30     23     11
D40V9, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             6              30
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM5 MUTATED        0      8      2      2      0      1
  ZMYM5 WILD-TYPE     17     24     11     30     16      6
D40V10, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             8              24
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = CDCA8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDCA8 MUTATED        1      5      1      2
  CDCA8 WILD-TYPE     18     48     29     22
D41V1, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDCA8 MUTATED        2      1      5      1
  CDCA8 WILD-TYPE     33     29     29     25
D41V2, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             5              29
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDCA8 MUTATED        2      1      0      2      1
  CDCA8 WILD-TYPE     27     17     13      7     12
D41V3, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDCA8 MUTATED        2      1      1      2      0
  CDCA8 WILD-TYPE     30     17     11      8     10
D41V4, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             2               8
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDCA8 MUTATED        1      1      3      3      1
  CDCA8 WILD-TYPE     25     19     25     22     19
D41V5, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDCA8 MUTATED        4      5      0
  CDCA8 WILD-TYPE     44     48     18
D41V6, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDCA8 MUTATED        3      2      2      2      0
  CDCA8 WILD-TYPE     34     29     15     19     13
D41V7, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDCA8 MUTATED        8      1      0
  CDCA8 WILD-TYPE     63     26     21
D41V8, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDCA8 MUTATED        0      1      1      0      3      4      0
  CDCA8 WILD-TYPE     18      7      9      8     33     21     12
D41V9, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             4              21
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDCA8 MUTATED        1      3      2      3      0      0
  CDCA8 WILD-TYPE     16     29     11     29     16      7
D41V10, multiclass
        clus
vv       CDCA8 MUTATED CDCA8 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = PAK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        3      5      2      1
  PAK1 WILD-TYPE     16     48     28     23
D42V1, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            3             16
  CLUS_2            5             48
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        2      4      5      0
  PAK1 WILD-TYPE     33     26     29     26
D42V2, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            4             26
  CLUS_3            5             29
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK1 MUTATED        1      2      1      0      0
  PAK1 WILD-TYPE     28     16     12      9     13
D42V3, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            2             16
  CLUS_3            1             12
  CLUS_4            0              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK1 MUTATED        1      2      1      0      0
  PAK1 WILD-TYPE     31     16     11     10     10
D42V4, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            2             16
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK1 MUTATED        3      2      4      2      0
  PAK1 WILD-TYPE     23     18     24     23     20
D42V5, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            2             18
  CLUS_3            4             24
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK1 MUTATED        2      7      2
  PAK1 WILD-TYPE     46     46     16
D42V6, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            7             46
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK1 MUTATED        2      3      2      4      0
  PAK1 WILD-TYPE     35     28     15     17     13
D42V7, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            3             28
  CLUS_3            2             15
  CLUS_4            4             17
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK1 MUTATED        7      2      2
  PAK1 WILD-TYPE     64     25     19
D42V8, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            7             64
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAK1 MUTATED        1      2      1      0      2      2      3
  PAK1 WILD-TYPE     17      6      9      8     34     23      9
D42V9, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2              6
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            3              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAK1 MUTATED        2      4      1      2      0      2
  PAK1 WILD-TYPE     15     28     12     30     16      5
D42V10, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            4             28
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            2              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = WRN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        3      4      3      5
  WRN WILD-TYPE     16     49     27     19
D43V1, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           3            16
  CLUS_2           4            49
  CLUS_3           3            27
  CLUS_4           5            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        6      3      5      1
  WRN WILD-TYPE     29     27     29     25
D43V2, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           6            29
  CLUS_2           3            27
  CLUS_3           5            29
  CLUS_4           1            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        5      2      2      1      0
  WRN WILD-TYPE     24     16     11      8     13
D43V3, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           5            24
  CLUS_2           2            16
  CLUS_3           2            11
  CLUS_4           1             8
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        5      2      2      1      0
  WRN WILD-TYPE     27     16     10      9     10
D43V4, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           5            27
  CLUS_2           2            16
  CLUS_3           2            10
  CLUS_4           1             9
  CLUS_5           0            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        4      3      5      2      1
  WRN WILD-TYPE     22     17     23     23     19
D43V5, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           4            22
  CLUS_2           3            17
  CLUS_3           5            23
  CLUS_4           2            23
  CLUS_5           1            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        5      8      2
  WRN WILD-TYPE     43     45     16
D43V6, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           5            43
  CLUS_2           8            45
  CLUS_3           2            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        6      4      1      3      1
  WRN WILD-TYPE     31     27     16     18     12
D43V7, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           6            31
  CLUS_2           4            27
  CLUS_3           1            16
  CLUS_4           3            18
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED       10      3      2
  WRN WILD-TYPE     61     24     19
D43V8, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1          10            61
  CLUS_2           3            24
  CLUS_3           2            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WRN MUTATED        4      2      0      0      4      3      2
  WRN WILD-TYPE     14      6     10      8     32     22     10
D43V9, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           4            14
  CLUS_2           2             6
  CLUS_3           0            10
  CLUS_4           0             8
  CLUS_5           4            32
  CLUS_6           3            22
  CLUS_7           2            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WRN MUTATED        2      6      1      3      1      2
  WRN WILD-TYPE     15     26     12     29     15      5
D43V10, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            15
  CLUS_2           6            26
  CLUS_3           1            12
  CLUS_4           3            29
  CLUS_5           1            15
  CLUS_6           2             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = CLOCK MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLOCK MUTATED        0      4      5      3
  CLOCK WILD-TYPE     19     49     25     21
D44V1, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             0              19
  CLUS_2             4              49
  CLUS_3             5              25
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLOCK MUTATED        4      2      4      2
  CLOCK WILD-TYPE     31     28     30     24
D44V2, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             4              30
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLOCK MUTATED        3      2      0      1      0
  CLOCK WILD-TYPE     26     16     13      8     13
D44V3, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             3              26
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLOCK MUTATED        3      2      0      1      0
  CLOCK WILD-TYPE     29     16     12      9     10
D44V4, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             3              29
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLOCK MUTATED        4      2      2      2      1
  CLOCK WILD-TYPE     22     18     26     23     19
D44V5, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             4              22
  CLUS_2             2              18
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLOCK MUTATED        5      4      2
  CLOCK WILD-TYPE     43     49     16
D44V6, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             5              43
  CLUS_2             4              49
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLOCK MUTATED        3      2      1      5      0
  CLOCK WILD-TYPE     34     29     16     16     13
D44V7, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             5              16
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLOCK MUTATED        6      3      2
  CLOCK WILD-TYPE     65     24     19
D44V8, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             6              65
  CLUS_2             3              24
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLOCK MUTATED        1      0      2      0      3      2      2
  CLOCK WILD-TYPE     17      8      8      8     33     23     10
D44V9, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             2              23
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLOCK MUTATED        0      3      1      3      1      2
  CLOCK WILD-TYPE     17     29     12     29     15      5
D44V10, multiclass
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             2               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = TMEM175 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM175 MUTATED        2      5      3      3
  TMEM175 WILD-TYPE     17     48     27     21
D45V1, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               5                48
  CLUS_3               3                27
  CLUS_4               3                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM175 MUTATED        4      2      4      3
  TMEM175 WILD-TYPE     31     28     30     23
D45V2, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               4                31
  CLUS_2               2                28
  CLUS_3               4                30
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM175 MUTATED        3      1      1      2      1
  TMEM175 WILD-TYPE     26     17     12      7     12
D45V3, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               3                26
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               2                 7
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM175 MUTATED        3      1      1      2      1
  TMEM175 WILD-TYPE     29     17     11      8      9
D45V4, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               2                 8
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM175 MUTATED        1      1      4      4      3
  TMEM175 WILD-TYPE     25     19     24     21     17
D45V5, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               4                24
  CLUS_4               4                21
  CLUS_5               3                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        5      7      1
  TMEM175 WILD-TYPE     43     46     17
D45V6, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               5                43
  CLUS_2               7                46
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM175 MUTATED        2      4      1      5      1
  TMEM175 WILD-TYPE     35     27     16     16     12
D45V7, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               4                27
  CLUS_3               1                16
  CLUS_4               5                16
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED       11      1      1
  TMEM175 WILD-TYPE     60     26     20
D45V8, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1              11                60
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM175 MUTATED        1      2      1      1      3      4      0
  TMEM175 WILD-TYPE     17      6      9      7     33     21     12
D45V9, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                 6
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               4                21
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM175 MUTATED        2      2      4      3      1      0
  TMEM175 WILD-TYPE     15     30      9     29     15      7
D45V10, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               2                30
  CLUS_3               4                 9
  CLUS_4               3                29
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = THBS4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS4 MUTATED        2      6      3      5
  THBS4 WILD-TYPE     17     47     27     19
D46V1, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             6              47
  CLUS_3             3              27
  CLUS_4             5              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS4 MUTATED        6      2      3      5
  THBS4 WILD-TYPE     29     28     31     21
D46V2, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             6              29
  CLUS_2             2              28
  CLUS_3             3              31
  CLUS_4             5              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS4 MUTATED        7      4      0      2      0
  THBS4 WILD-TYPE     22     14     13      7     13
D46V3, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             7              22
  CLUS_2             4              14
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS4 MUTATED        7      3      0      2      1
  THBS4 WILD-TYPE     25     15     12      8      9
D46V4, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             7              25
  CLUS_2             3              15
  CLUS_3             0              12
  CLUS_4             2               8
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS4 MUTATED        5      2      1      4      4
  THBS4 WILD-TYPE     21     18     27     21     16
D46V5, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             5              21
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             4              21
  CLUS_5             4              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        8      7      1
  THBS4 WILD-TYPE     40     46     17
D46V6, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             8              40
  CLUS_2             7              46
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS4 MUTATED        3      6      2      4      1
  THBS4 WILD-TYPE     34     25     15     17     12
D46V7, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             6              25
  CLUS_3             2              15
  CLUS_4             4              17
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED       11      3      2
  THBS4 WILD-TYPE     60     24     19
D46V8, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1            11              60
  CLUS_2             3              24
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THBS4 MUTATED        4      1      2      3      4      2      0
  THBS4 WILD-TYPE     14      7      8      5     32     23     12
D46V9, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             3               5
  CLUS_5             4              32
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THBS4 MUTATED        1      3      4      6      2      0
  THBS4 WILD-TYPE     16     29      9     26     14      7
D46V10, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             4               9
  CLUS_4             6              26
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = TMED10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMED10 MUTATED        2      2      2      2
  TMED10 WILD-TYPE     17     51     28     22
D47V1, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMED10 MUTATED        1      4      3      0
  TMED10 WILD-TYPE     34     26     31     26
D47V2, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              4               26
  CLUS_3              3               31
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMED10 MUTATED        0      0      3      1      0
  TMED10 WILD-TYPE     29     18     10      8     13
D47V3, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              0               18
  CLUS_3              3               10
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMED10 MUTATED        2      0      1      0      1
  TMED10 WILD-TYPE     30     18     11     10      9
D47V4, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMED10 MUTATED        0      1      3      4      0
  TMED10 WILD-TYPE     26     19     25     21     20
D47V5, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              3               25
  CLUS_4              4               21
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMED10 MUTATED        5      2      1
  TMED10 WILD-TYPE     43     51     17
D47V6, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              5               43
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMED10 MUTATED        1      1      3      2      1
  TMED10 WILD-TYPE     36     30     14     19     12
D47V7, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              3               14
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMED10 MUTATED        4      3      1
  TMED10 WILD-TYPE     67     24     20
D47V8, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              3               24
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMED10 MUTATED        1      0      1      0      3      3      0
  TMED10 WILD-TYPE     17      8      9      8     33     22     12
D47V9, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              3               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMED10 MUTATED        0      2      0      5      1      0
  TMED10 WILD-TYPE     17     30     13     27     15      7
D47V10, multiclass
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              5               27
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = NFIL3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIL3 MUTATED        2      3      4      1
  NFIL3 WILD-TYPE     17     50     26     23
D48V1, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             3              50
  CLUS_3             4              26
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIL3 MUTATED        3      1      3      3
  NFIL3 WILD-TYPE     32     29     31     23
D48V2, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFIL3 MUTATED        4      1      0      1      2
  NFIL3 WILD-TYPE     25     17     13      8     11
D48V3, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFIL3 MUTATED        6      1      0      0      1
  NFIL3 WILD-TYPE     26     17     12     10      9
D48V4, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             6              26
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFIL3 MUTATED        2      2      1      1      4
  NFIL3 WILD-TYPE     24     18     27     24     16
D48V5, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             4              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFIL3 MUTATED        2      5      3
  NFIL3 WILD-TYPE     46     48     15
D48V6, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             5              48
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFIL3 MUTATED        4      5      0      1      0
  NFIL3 WILD-TYPE     33     26     17     20     13
D48V7, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             5              26
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFIL3 MUTATED        8      0      2
  NFIL3 WILD-TYPE     63     27     19
D48V8, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFIL3 MUTATED        1      0      1      1      2      4      1
  NFIL3 WILD-TYPE     17      8      9      7     34     21     11
D48V9, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             4              21
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFIL3 MUTATED        2      4      1      1      2      0
  NFIL3 WILD-TYPE     15     28     12     31     14      7
D48V10, multiclass
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             4              28
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = RGPD5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGPD5 MUTATED        2      4      0      0
  RGPD5 WILD-TYPE     17     49     30     24
D49V1, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             4              49
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGPD5 MUTATED        1      1      3      1
  RGPD5 WILD-TYPE     34     29     31     25
D49V2, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD5 MUTATED        0      2      1      0      1
  RGPD5 WILD-TYPE     29     16     12      9     12
D49V3, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD5 MUTATED        0      1      2      0      1
  RGPD5 WILD-TYPE     32     17     10     10      9
D49V4, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             1              17
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD5 MUTATED        2      0      1      2      1
  RGPD5 WILD-TYPE     24     20     27     23     19
D49V5, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGPD5 MUTATED        4      2      0
  RGPD5 WILD-TYPE     44     51     18
D49V6, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD5 MUTATED        4      1      1      0      0
  RGPD5 WILD-TYPE     33     30     16     21     13
D49V7, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGPD5 MUTATED        4      1      1
  RGPD5 WILD-TYPE     67     26     20
D49V8, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RGPD5 MUTATED        0      0      1      0      4      1      0
  RGPD5 WILD-TYPE     18      8      9      8     32     24     12
D49V9, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGPD5 MUTATED        0      2      0      3      1      0
  RGPD5 WILD-TYPE     17     30     13     29     15      7
D49V10, multiclass
        clus
vv       RGPD5 MUTATED RGPD5 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      3      4      0
  EMG1 WILD-TYPE     18     50     26     24
D50V1, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            3             50
  CLUS_3            4             26
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        4      1      0      3
  EMG1 WILD-TYPE     31     29     34     23
D50V2, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            3             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        1      2      1      2      2
  EMG1 WILD-TYPE     28     16     12      7     11
D50V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            2             16
  CLUS_3            1             12
  CLUS_4            2              7
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        3      1      2      2      0
  EMG1 WILD-TYPE     29     17     10      8     10
D50V4, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            2             10
  CLUS_4            2              8
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        3      0      0      1      3
  EMG1 WILD-TYPE     23     20     28     24     17
D50V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      4      1
  EMG1 WILD-TYPE     46     49     17
D50V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            4             49
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        3      3      0      1      0
  EMG1 WILD-TYPE     34     28     17     20     13
D50V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            3             28
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        5      2      0
  EMG1 WILD-TYPE     66     25     21
D50V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        1      1      0      2      2      0      1
  EMG1 WILD-TYPE     17      7     10      6     34     25     11
D50V9, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            2              6
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EMG1 MUTATED        1      2      2      2      0      0
  EMG1 WILD-TYPE     16     30     11     30     16      7
D50V10, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            2             11
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = MED12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        2      2      7      2
  MED12 WILD-TYPE     17     51     23     22
D51V1, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             2              51
  CLUS_3             7              23
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        3      2      4      4
  MED12 WILD-TYPE     32     28     30     22
D51V2, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             4              30
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        2      4      0      1      2
  MED12 WILD-TYPE     27     14     13      8     11
D51V3, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             4              14
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        5      3      1      0      0
  MED12 WILD-TYPE     27     15     11     10     10
D51V4, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             3              15
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        5      0      1      4      3
  MED12 WILD-TYPE     21     20     27     21     17
D51V5, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             5              21
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             4              21
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        7      4      2
  MED12 WILD-TYPE     41     49     16
D51V6, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             7              41
  CLUS_2             4              49
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        5      3      2      2      1
  MED12 WILD-TYPE     32     28     15     19     12
D51V7, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        8      4      1
  MED12 WILD-TYPE     63     23     20
D51V8, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             4              23
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED12 MUTATED        2      1      2      1      5      1      1
  MED12 WILD-TYPE     16      7      8      7     31     24     11
D51V9, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             5              31
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED12 MUTATED        2      5      0      4      2      0
  MED12 WILD-TYPE     15     27     13     28     14      7
D51V10, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             5              27
  CLUS_3             0              13
  CLUS_4             4              28
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = SYT15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT15 MUTATED        2      3      4      2
  SYT15 WILD-TYPE     17     50     26     22
D52V1, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             3              50
  CLUS_3             4              26
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT15 MUTATED        5      2      3      1
  SYT15 WILD-TYPE     30     28     31     25
D52V2, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             2              28
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT15 MUTATED        2      1      2      1      1
  SYT15 WILD-TYPE     27     17     11      8     12
D52V3, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT15 MUTATED        2      1      3      1      0
  SYT15 WILD-TYPE     30     17      9      9     10
D52V4, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             3               9
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT15 MUTATED        3      1      1      4      2
  SYT15 WILD-TYPE     23     19     27     21     18
D52V5, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             4              21
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        6      5      0
  SYT15 WILD-TYPE     42     48     18
D52V6, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT15 MUTATED        3      3      2      3      0
  SYT15 WILD-TYPE     34     28     15     18     13
D52V7, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        8      3      0
  SYT15 WILD-TYPE     63     24     21
D52V8, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYT15 MUTATED        1      0      2      0      3      4      0
  SYT15 WILD-TYPE     17      8      8      8     33     21     12
D52V9, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             4              21
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYT15 MUTATED        0      1      3      6      0      0
  SYT15 WILD-TYPE     17     31     10     26     16      7
D52V10, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             3              10
  CLUS_4             6              26
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = OTUD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        1     10      5      2
  OTUD4 WILD-TYPE     18     43     25     22
D53V1, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2            10              43
  CLUS_3             5              25
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        3      2      9      4
  OTUD4 WILD-TYPE     32     28     25     22
D53V2, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             9              25
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTUD4 MUTATED        7      3      2      1      3
  OTUD4 WILD-TYPE     22     15     11      8     10
D53V3, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             7              22
  CLUS_2             3              15
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             3              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTUD4 MUTATED        7      3      5      1      0
  OTUD4 WILD-TYPE     25     15      7      9     10
D53V4, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             7              25
  CLUS_2             3              15
  CLUS_3             5               7
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTUD4 MUTATED        4      4      7      2      1
  OTUD4 WILD-TYPE     22     16     21     23     19
D53V5, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             4              16
  CLUS_3             7              21
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        6      8      4
  OTUD4 WILD-TYPE     42     45     14
D53V6, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             8              45
  CLUS_3             4              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTUD4 MUTATED        4      5      1      5      3
  OTUD4 WILD-TYPE     33     26     16     16     10
D53V7, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             5              26
  CLUS_3             1              16
  CLUS_4             5              16
  CLUS_5             3              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED       12      1      5
  OTUD4 WILD-TYPE     59     26     16
D53V8, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1            12              59
  CLUS_2             1              26
  CLUS_3             5              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OTUD4 MUTATED        1      0      2      1      7      5      2
  OTUD4 WILD-TYPE     17      8      8      7     29     20     10
D53V9, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             7              29
  CLUS_6             5              20
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OTUD4 MUTATED        1      6      3      3      4      1
  OTUD4 WILD-TYPE     16     26     10     29     12      6
D53V10, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             6              26
  CLUS_3             3              10
  CLUS_4             3              29
  CLUS_5             4              12
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = KIAA1949 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1949 MUTATED        3      4      2      1
  KIAA1949 WILD-TYPE     16     49     28     23
D54V1, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                4                 49
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1949 MUTATED        2      2      4      2
  KIAA1949 WILD-TYPE     33     28     30     24
D54V2, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                2                 28
  CLUS_3                4                 30
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1949 MUTATED        2      3      1      2      0
  KIAA1949 WILD-TYPE     27     15     12      7     13
D54V3, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                3                 15
  CLUS_3                1                 12
  CLUS_4                2                  7
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1949 MUTATED        3      3      1      1      0
  KIAA1949 WILD-TYPE     29     15     11      9     10
D54V4, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                3                 29
  CLUS_2                3                 15
  CLUS_3                1                 11
  CLUS_4                1                  9
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1949 MUTATED        2      0      3      3      2
  KIAA1949 WILD-TYPE     24     20     25     22     18
D54V5, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 20
  CLUS_3                3                 25
  CLUS_4                3                 22
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        5      5      0
  KIAA1949 WILD-TYPE     43     48     18
D54V6, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                5                 43
  CLUS_2                5                 48
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1949 MUTATED        4      3      2      1      0
  KIAA1949 WILD-TYPE     33     28     15     20     13
D54V7, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                4                 33
  CLUS_2                3                 28
  CLUS_3                2                 15
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1949 MUTATED        8      2      0
  KIAA1949 WILD-TYPE     63     25     21
D54V8, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                8                 63
  CLUS_2                2                 25
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1949 MUTATED        2      0      1      2      4      1      0
  KIAA1949 WILD-TYPE     16      8      9      6     32     24     12
D54V9, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                2                  6
  CLUS_5                4                 32
  CLUS_6                1                 24
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1949 MUTATED        2      3      2      3      0      0
  KIAA1949 WILD-TYPE     15     29     11     29     16      7
D54V10, multiclass
        clus
vv       KIAA1949 MUTATED KIAA1949 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                3                 29
  CLUS_3                2                 11
  CLUS_4                3                 29
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = OR10A7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10A7 MUTATED        2      7      2      1
  OR10A7 WILD-TYPE     17     46     28     23
D55V1, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              7               46
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10A7 MUTATED        4      5      2      1
  OR10A7 WILD-TYPE     31     25     32     25
D55V2, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              5               25
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A7 MUTATED        0      3      1      2      1
  OR10A7 WILD-TYPE     29     15     12      7     12
D55V3, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              3               15
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A7 MUTATED        1      3      1      1      1
  OR10A7 WILD-TYPE     31     15     11      9      9
D55V4, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              3               15
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A7 MUTATED        2      2      3      3      1
  OR10A7 WILD-TYPE     24     18     25     22     19
D55V5, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               18
  CLUS_3              3               25
  CLUS_4              3               22
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        6      4      1
  OR10A7 WILD-TYPE     42     49     17
D55V6, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              6               42
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A7 MUTATED        6      1      2      0      2
  OR10A7 WILD-TYPE     31     30     15     21     11
D55V7, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              6               31
  CLUS_2              1               30
  CLUS_3              2               15
  CLUS_4              0               21
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        6      5      0
  OR10A7 WILD-TYPE     65     22     21
D55V8, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              6               65
  CLUS_2              5               22
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR10A7 MUTATED        2      1      0      1      5      1      1
  OR10A7 WILD-TYPE     16      7     10      7     31     24     11
D55V9, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              5               31
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR10A7 MUTATED        1      4      1      4      0      1
  OR10A7 WILD-TYPE     16     28     12     28     16      6
D55V10, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              4               28
  CLUS_3              1               12
  CLUS_4              4               28
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = SYNGAP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGAP1 MUTATED        3      5      6      1
  SYNGAP1 WILD-TYPE     16     48     24     23
D56V1, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               3                16
  CLUS_2               5                48
  CLUS_3               6                24
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGAP1 MUTATED        1      3      6      5
  SYNGAP1 WILD-TYPE     34     27     28     21
D56V2, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               3                27
  CLUS_3               6                28
  CLUS_4               5                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNGAP1 MUTATED        2      5      2      1      1
  SYNGAP1 WILD-TYPE     27     13     11      8     12
D56V3, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               5                13
  CLUS_3               2                11
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNGAP1 MUTATED        3      4      1      0      3
  SYNGAP1 WILD-TYPE     29     14     11     10      7
D56V4, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               4                14
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               3                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNGAP1 MUTATED        2      2      4      3      4
  SYNGAP1 WILD-TYPE     24     18     24     22     16
D56V5, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                18
  CLUS_3               4                24
  CLUS_4               3                22
  CLUS_5               4                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNGAP1 MUTATED        8      6      1
  SYNGAP1 WILD-TYPE     40     47     17
D56V6, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               8                40
  CLUS_2               6                47
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNGAP1 MUTATED        6      4      2      2      1
  SYNGAP1 WILD-TYPE     31     27     15     19     12
D56V7, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               6                31
  CLUS_2               4                27
  CLUS_3               2                15
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNGAP1 MUTATED       10      3      2
  SYNGAP1 WILD-TYPE     61     24     19
D56V8, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1              10                61
  CLUS_2               3                24
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNGAP1 MUTATED        2      0      3      1      6      2      1
  SYNGAP1 WILD-TYPE     16      8      7      7     30     23     11
D56V9, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               0                 8
  CLUS_3               3                 7
  CLUS_4               1                 7
  CLUS_5               6                30
  CLUS_6               2                23
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYNGAP1 MUTATED        1      4      2      4      4      0
  SYNGAP1 WILD-TYPE     16     28     11     28     12      7
D56V10, multiclass
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               4                28
  CLUS_3               2                11
  CLUS_4               4                28
  CLUS_5               4                12
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = TOX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX4 MUTATED        2      4      2      1
  TOX4 WILD-TYPE     17     49     28     23
D57V1, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            4             49
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX4 MUTATED        5      1      1      2
  TOX4 WILD-TYPE     30     29     33     24
D57V2, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            5             30
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOX4 MUTATED        2      0      2      1      0
  TOX4 WILD-TYPE     27     18     11      8     13
D57V3, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOX4 MUTATED        3      0      1      0      1
  TOX4 WILD-TYPE     29     18     11     10      9
D57V4, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOX4 MUTATED        0      1      4      2      2
  TOX4 WILD-TYPE     26     19     24     23     18
D57V5, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            4             24
  CLUS_4            2             23
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOX4 MUTATED        5      4      0
  TOX4 WILD-TYPE     43     49     18
D57V6, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            5             43
  CLUS_2            4             49
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOX4 MUTATED        4      2      1      2      0
  TOX4 WILD-TYPE     33     29     16     19     13
D57V7, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOX4 MUTATED        7      2      0
  TOX4 WILD-TYPE     64     25     21
D57V8, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            7             64
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOX4 MUTATED        2      1      2      1      2      1      0
  TOX4 WILD-TYPE     16      7      8      7     34     24     12
D57V9, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1              7
  CLUS_3            2              8
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOX4 MUTATED        3      2      1      2      1      0
  TOX4 WILD-TYPE     14     30     12     30     15      7
D57V10, multiclass
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  CLUS_1            3             14
  CLUS_2            2             30
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = CUL4B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      5      5      2
  CUL4B WILD-TYPE     18     48     25     22
D58V1, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             5              25
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        4      2      3      4
  CUL4B WILD-TYPE     31     28     31     22
D58V2, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             3              31
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL4B MUTATED        2      1      2      3      2
  CUL4B WILD-TYPE     27     17     11      6     11
D58V3, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             3               6
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL4B MUTATED        2      2      2      3      1
  CUL4B WILD-TYPE     30     16     10      7      9
D58V4, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             2              10
  CLUS_4             3               7
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL4B MUTATED        2      2      3      4      2
  CUL4B WILD-TYPE     24     18     25     21     18
D58V5, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             3              25
  CLUS_4             4              21
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        8      2      3
  CUL4B WILD-TYPE     40     51     15
D58V6, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             8              40
  CLUS_2             2              51
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL4B MUTATED        4      3      1      3      2
  CUL4B WILD-TYPE     33     28     16     18     11
D58V7, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             4              33
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             3              18
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        8      2      3
  CUL4B WILD-TYPE     63     25     18
D58V8, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             8              63
  CLUS_2             2              25
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL4B MUTATED        1      0      3      3      4      0      2
  CUL4B WILD-TYPE     17      8      7      5     32     25     10
D58V9, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             3               7
  CLUS_4             3               5
  CLUS_5             4              32
  CLUS_6             0              25
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUL4B MUTATED        2      1      2      5      2      1
  CUL4B WILD-TYPE     15     31     11     27     14      6
D58V10, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2              15
  CLUS_2             1              31
  CLUS_3             2              11
  CLUS_4             5              27
  CLUS_5             2              14
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = NFAT5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        5      5      2      1
  NFAT5 WILD-TYPE     14     48     28     23
D59V1, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             5              14
  CLUS_2             5              48
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        3      2      7      1
  NFAT5 WILD-TYPE     32     28     27     25
D59V2, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             7              27
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        2      3      2      1      0
  NFAT5 WILD-TYPE     27     15     11      8     13
D59V3, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             3              15
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        3      3      0      0      2
  NFAT5 WILD-TYPE     29     15     12     10      8
D59V4, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             3              15
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        3      2      4      2      2
  NFAT5 WILD-TYPE     23     18     24     23     18
D59V5, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             2              18
  CLUS_3             4              24
  CLUS_4             2              23
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        4      8      1
  NFAT5 WILD-TYPE     44     45     17
D59V6, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             8              45
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        8      2      1      1      1
  NFAT5 WILD-TYPE     29     29     16     20     12
D59V7, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             8              29
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED       10      2      1
  NFAT5 WILD-TYPE     61     25     20
D59V8, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1            10              61
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFAT5 MUTATED        1      1      1      2      6      2      0
  NFAT5 WILD-TYPE     17      7      9      6     30     23     12
D59V9, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             6              30
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFAT5 MUTATED        1      6      2      3      1      0
  NFAT5 WILD-TYPE     16     26     11     29     15      7
D59V10, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             6              26
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = OTOF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTOF MUTATED        2      8      6      2
  OTOF WILD-TYPE     17     45     24     22
D60V1, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            2             17
  CLUS_2            8             45
  CLUS_3            6             24
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTOF MUTATED        7      3      4      4
  OTOF WILD-TYPE     28     27     30     22
D60V2, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            7             28
  CLUS_2            3             27
  CLUS_3            4             30
  CLUS_4            4             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTOF MUTATED        5      4      1      2      0
  OTOF WILD-TYPE     24     14     12      7     13
D60V3, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            5             24
  CLUS_2            4             14
  CLUS_3            1             12
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTOF MUTATED        5      4      0      2      1
  OTOF WILD-TYPE     27     14     12      8      9
D60V4, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            5             27
  CLUS_2            4             14
  CLUS_3            0             12
  CLUS_4            2              8
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTOF MUTATED        6      2      3      3      3
  OTOF WILD-TYPE     20     18     25     22     17
D60V5, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            6             20
  CLUS_2            2             18
  CLUS_3            3             25
  CLUS_4            3             22
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTOF MUTATED        3     11      3
  OTOF WILD-TYPE     45     42     15
D60V6, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            3             45
  CLUS_2           11             42
  CLUS_3            3             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTOF MUTATED        5      5      1      3      3
  OTOF WILD-TYPE     32     26     16     18     10
D60V7, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            5             32
  CLUS_2            5             26
  CLUS_3            1             16
  CLUS_4            3             18
  CLUS_5            3             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTOF MUTATED       11      2      4
  OTOF WILD-TYPE     60     25     17
D60V8, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1           11             60
  CLUS_2            2             25
  CLUS_3            4             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OTOF MUTATED        0      0      2      3      6      4      2
  OTOF WILD-TYPE     18      8      8      5     30     21     10
D60V9, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            3              5
  CLUS_5            6             30
  CLUS_6            4             21
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OTOF MUTATED        2      4      3      4      4      0
  OTOF WILD-TYPE     15     28     10     28     12      7
D60V10, multiclass
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  CLUS_1            2             15
  CLUS_2            4             28
  CLUS_3            3             10
  CLUS_4            4             28
  CLUS_5            4             12
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = SMG7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        2      5      2      1
  SMG7 WILD-TYPE     17     48     28     23
D61V1, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            5             48
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        3      1      5      1
  SMG7 WILD-TYPE     32     29     29     25
D61V2, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            5             29
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG7 MUTATED        1      1      1      3      0
  SMG7 WILD-TYPE     28     17     12      6     13
D61V3, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            3              6
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG7 MUTATED        2      1      1      2      0
  SMG7 WILD-TYPE     30     17     11      8     10
D61V4, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            2              8
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG7 MUTATED        2      1      4      3      0
  SMG7 WILD-TYPE     24     19     24     22     20
D61V5, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             19
  CLUS_3            4             24
  CLUS_4            3             22
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        4      6      0
  SMG7 WILD-TYPE     44     47     18
D61V6, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            6             47
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG7 MUTATED        5      0      2      2      1
  SMG7 WILD-TYPE     32     31     15     19     12
D61V7, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            5             32
  CLUS_2            0             31
  CLUS_3            2             15
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        9      1      0
  SMG7 WILD-TYPE     62     26     21
D61V8, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            9             62
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMG7 MUTATED        1      2      1      0      6      0      0
  SMG7 WILD-TYPE     17      6      9      8     30     25     12
D61V9, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2              6
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            6             30
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMG7 MUTATED        2      3      1      4      0      0
  SMG7 WILD-TYPE     15     29     12     28     16      7
D61V10, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            3             29
  CLUS_3            1             12
  CLUS_4            4             28
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = SLC6A9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A9 MUTATED        2      4      3      1
  SLC6A9 WILD-TYPE     17     49     27     23
D62V1, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              4               49
  CLUS_3              3               27
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A9 MUTATED        2      2      3      3
  SLC6A9 WILD-TYPE     33     28     31     23
D62V2, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              3               31
  CLUS_4              3               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A9 MUTATED        1      0      2      0      2
  SLC6A9 WILD-TYPE     28     18     11      9     11
D62V3, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              2               11
  CLUS_4              0                9
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A9 MUTATED        1      0      1      0      3
  SLC6A9 WILD-TYPE     31     18     11     10      7
D62V4, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              3                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A9 MUTATED        0      1      4      2      3
  SLC6A9 WILD-TYPE     26     19     24     23     17
D62V5, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              4               24
  CLUS_4              2               23
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A9 MUTATED        4      3      3
  SLC6A9 WILD-TYPE     44     50     15
D62V6, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              3               50
  CLUS_3              3               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A9 MUTATED        2      4      1      2      1
  SLC6A9 WILD-TYPE     35     27     16     19     12
D62V7, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              4               27
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A9 MUTATED        6      1      3
  SLC6A9 WILD-TYPE     65     26     18
D62V8, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              6               65
  CLUS_2              1               26
  CLUS_3              3               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A9 MUTATED        1      1      0      1      2      4      1
  SLC6A9 WILD-TYPE     17      7     10      7     34     21     11
D62V9, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              4               21
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC6A9 MUTATED        1      1      1      2      4      1
  SLC6A9 WILD-TYPE     16     31     12     30     12      6
D62V10, multiclass
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              4               12
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = INTS7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS7 MUTATED        1      5      2      1
  INTS7 WILD-TYPE     18     48     28     23
D63V1, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS7 MUTATED        3      3      3      0
  INTS7 WILD-TYPE     32     27     31     26
D63V2, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              27
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS7 MUTATED        3      1      0      1      1
  INTS7 WILD-TYPE     26     17     13      8     12
D63V3, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS7 MUTATED        4      1      0      0      1
  INTS7 WILD-TYPE     28     17     12     10      9
D63V4, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS7 MUTATED        2      1      3      3      0
  INTS7 WILD-TYPE     24     19     25     22     20
D63V5, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS7 MUTATED        4      5      0
  INTS7 WILD-TYPE     44     48     18
D63V6, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS7 MUTATED        4      1      2      2      0
  INTS7 WILD-TYPE     33     30     15     19     13
D63V7, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS7 MUTATED        7      2      0
  INTS7 WILD-TYPE     64     25     21
D63V8, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INTS7 MUTATED        1      0      3      0      3      1      1
  INTS7 WILD-TYPE     17      8      7      8     33     24     11
D63V9, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             3               7
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INTS7 MUTATED        2      4      0      3      0      0
  INTS7 WILD-TYPE     15     28     13     29     16      7
D63V10, multiclass
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             4              28
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = PASD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PASD1 MUTATED        0      4      7      1
  PASD1 WILD-TYPE     19     49     23     23
D64V1, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             4              49
  CLUS_3             7              23
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PASD1 MUTATED        5      3      1      3
  PASD1 WILD-TYPE     30     27     33     23
D64V2, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             3              27
  CLUS_3             1              33
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PASD1 MUTATED        3      0      2      1      1
  PASD1 WILD-TYPE     26     18     11      8     12
D64V3, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PASD1 MUTATED        2      0      2      2      1
  PASD1 WILD-TYPE     30     18     10      8      9
D64V4, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             2               8
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PASD1 MUTATED        2      2      2      4      2
  PASD1 WILD-TYPE     24     18     26     21     18
D64V5, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             2              26
  CLUS_4             4              21
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PASD1 MUTATED        6      4      2
  PASD1 WILD-TYPE     42     49     16
D64V6, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             4              49
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PASD1 MUTATED        2      4      2      3      1
  PASD1 WILD-TYPE     35     27     15     18     12
D64V7, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             4              27
  CLUS_3             2              15
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PASD1 MUTATED        5      5      2
  PASD1 WILD-TYPE     66     22     19
D64V8, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             5              22
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PASD1 MUTATED        1      1      4      1      2      3      0
  PASD1 WILD-TYPE     17      7      6      7     34     22     12
D64V9, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             4               6
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PASD1 MUTATED        1      1      2      5      3      0
  PASD1 WILD-TYPE     16     31     11     27     13      7
D64V10, multiclass
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             2              11
  CLUS_4             5              27
  CLUS_5             3              13
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = BRDT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRDT MUTATED        0      4      4      3
  BRDT WILD-TYPE     19     49     26     21
D65V1, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            0             19
  CLUS_2            4             49
  CLUS_3            4             26
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRDT MUTATED        5      2      3      1
  BRDT WILD-TYPE     30     28     31     25
D65V2, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            5             30
  CLUS_2            2             28
  CLUS_3            3             31
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRDT MUTATED        3      1      0      1      0
  BRDT WILD-TYPE     26     17     13      8     13
D65V3, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            3             26
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRDT MUTATED        4      0      0      1      0
  BRDT WILD-TYPE     28     18     12      9     10
D65V4, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            4             28
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRDT MUTATED        5      1      1      3      1
  BRDT WILD-TYPE     21     19     27     22     19
D65V5, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            5             21
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            3             22
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        4      6      1
  BRDT WILD-TYPE     44     47     17
D65V6, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            4             44
  CLUS_2            6             47
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRDT MUTATED        4      0      2      3      2
  BRDT WILD-TYPE     33     31     15     18     11
D65V7, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            4             33
  CLUS_2            0             31
  CLUS_3            2             15
  CLUS_4            3             18
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        6      3      2
  BRDT WILD-TYPE     65     24     19
D65V8, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            6             65
  CLUS_2            3             24
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRDT MUTATED        1      1      2      1      3      1      1
  BRDT WILD-TYPE     17      7      8      7     33     24     11
D65V9, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            2              8
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRDT MUTATED        0      3      1      5      1      0
  BRDT WILD-TYPE     17     29     12     27     15      7
D65V10, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            1             12
  CLUS_4            5             27
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = CDH3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        1      2      3      1
  CDH3 WILD-TYPE     18     51     27     23
D66V1, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            3             27
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        4      1      1      1
  CDH3 WILD-TYPE     31     29     33     25
D66V2, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH3 MUTATED        2      0      0      1      0
  CDH3 WILD-TYPE     27     18     13      8     13
D66V3, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH3 MUTATED        3      0      0      0      0
  CDH3 WILD-TYPE     29     18     12     10     10
D66V4, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH3 MUTATED        3      2      0      1      0
  CDH3 WILD-TYPE     23     18     28     24     20
D66V5, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        1      3      2
  CDH3 WILD-TYPE     47     50     16
D66V6, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            3             50
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH3 MUTATED        2      0      0      2      2
  CDH3 WILD-TYPE     35     31     17     19     11
D66V7, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        4      1      1
  CDH3 WILD-TYPE     67     26     20
D66V8, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH3 MUTATED        0      0      1      0      2      1      1
  CDH3 WILD-TYPE     18      8      9      8     34     24     11
D66V9, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH3 MUTATED        0      2      0      1      1      1
  CDH3 WILD-TYPE     17     30     13     31     15      6
D66V10, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = CTAGE5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTAGE5 MUTATED        2      2      2      2
  CTAGE5 WILD-TYPE     17     51     28     22
D67V1, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTAGE5 MUTATED        2      2      3      1
  CTAGE5 WILD-TYPE     33     28     31     25
D67V2, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              3               31
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTAGE5 MUTATED        3      1      0      1      0
  CTAGE5 WILD-TYPE     26     17     13      8     13
D67V3, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTAGE5 MUTATED        4      1      0      0      0
  CTAGE5 WILD-TYPE     28     17     12     10     10
D67V4, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTAGE5 MUTATED        3      2      1      2      0
  CTAGE5 WILD-TYPE     23     18     27     23     20
D67V5, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTAGE5 MUTATED        3      3      2
  CTAGE5 WILD-TYPE     45     50     16
D67V6, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              3               50
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTAGE5 MUTATED        1      1      2      2      2
  CTAGE5 WILD-TYPE     36     30     15     19     11
D67V7, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              2               15
  CLUS_4              2               19
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTAGE5 MUTATED        5      1      2
  CTAGE5 WILD-TYPE     66     26     19
D67V8, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTAGE5 MUTATED        1      0      1      0      3      2      1
  CTAGE5 WILD-TYPE     17      8      9      8     33     23     11
D67V9, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTAGE5 MUTATED        2      2      0      2      1      1
  CTAGE5 WILD-TYPE     15     30     13     30     15      6
D67V10, multiclass
        clus
vv       CTAGE5 MUTATED CTAGE5 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = C6ORF165 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF165 MUTATED        4      1      4      0
  C6ORF165 WILD-TYPE     15     52     26     24
D68V1, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                1                 52
  CLUS_3                4                 26
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF165 MUTATED        4      2      2      1
  C6ORF165 WILD-TYPE     31     28     32     25
D68V2, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                4                 31
  CLUS_2                2                 28
  CLUS_3                2                 32
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        1      0      1      1      1
  C6ORF165 WILD-TYPE     28     18     12      8     12
D68V3, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                0                 18
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        2      0      1      0      1
  C6ORF165 WILD-TYPE     30     18     11     10      9
D68V4, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                0                 18
  CLUS_3                1                 11
  CLUS_4                0                 10
  CLUS_5                1                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        2      2      2      2      1
  C6ORF165 WILD-TYPE     24     18     26     23     19
D68V5, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                2                 18
  CLUS_3                2                 26
  CLUS_4                2                 23
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF165 MUTATED        4      3      2
  C6ORF165 WILD-TYPE     44     50     16
D68V6, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                3                 50
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        4      1      0      3      1
  C6ORF165 WILD-TYPE     33     30     17     18     12
D68V7, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                4                 33
  CLUS_2                1                 30
  CLUS_3                0                 17
  CLUS_4                3                 18
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF165 MUTATED        7      0      2
  C6ORF165 WILD-TYPE     64     27     19
D68V8, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                7                 64
  CLUS_2                0                 27
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF165 MUTATED        1      0      1      1      2      2      1
  C6ORF165 WILD-TYPE     17      8      9      7     34     23     11
D68V9, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                1                  7
  CLUS_5                2                 34
  CLUS_6                2                 23
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C6ORF165 MUTATED        1      2      1      2      1      1
  C6ORF165 WILD-TYPE     16     30     12     30     15      6
D68V10, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                2                 30
  CLUS_3                1                 12
  CLUS_4                2                 30
  CLUS_5                1                 15
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = POP5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP5 MUTATED        0      4      1      1
  POP5 WILD-TYPE     19     49     29     23
D69V1, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            4             49
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP5 MUTATED        0      1      4      1
  POP5 WILD-TYPE     35     29     30     25
D69V2, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            1             29
  CLUS_3            4             30
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP5 MUTATED        2      1      0      0      1
  POP5 WILD-TYPE     27     17     13      9     12
D69V3, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            0              9
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP5 MUTATED        1      1      0      1      1
  POP5 WILD-TYPE     31     17     12      9      9
D69V4, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP5 MUTATED        3      1      1      1      0
  POP5 WILD-TYPE     23     19     27     24     20
D69V5, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        3      3      0
  POP5 WILD-TYPE     45     50     18
D69V6, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP5 MUTATED        1      1      1      2      1
  POP5 WILD-TYPE     36     30     16     19     12
D69V7, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        5      1      0
  POP5 WILD-TYPE     66     26     21
D69V8, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POP5 MUTATED        0      1      1      1      3      0      0
  POP5 WILD-TYPE     18      7      9      7     33     25     12
D69V9, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POP5 MUTATED        3      1      1      1      0      0
  POP5 WILD-TYPE     14     31     12     31     16      7
D69V10, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            3             14
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = CEL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        1      1      3      2
  CEL WILD-TYPE     18     52     27     22
D70V1, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            18
  CLUS_2           1            52
  CLUS_3           3            27
  CLUS_4           2            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        1      1      1      4
  CEL WILD-TYPE     34     29     33     22
D70V2, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            34
  CLUS_2           1            29
  CLUS_3           1            33
  CLUS_4           4            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        1      0      1      0      1
  CEL WILD-TYPE     28     18     12      9     12
D70V3, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            28
  CLUS_2           0            18
  CLUS_3           1            12
  CLUS_4           0             9
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        1      0      0      0      2
  CEL WILD-TYPE     31     18     12     10      8
D70V4, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            31
  CLUS_2           0            18
  CLUS_3           0            12
  CLUS_4           0            10
  CLUS_5           2             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        1      3      1      0      2
  CEL WILD-TYPE     25     17     27     25     18
D70V5, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            25
  CLUS_2           3            17
  CLUS_3           1            27
  CLUS_4           0            25
  CLUS_5           2            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        1      3      3
  CEL WILD-TYPE     47     50     15
D70V6, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            47
  CLUS_2           3            50
  CLUS_3           3            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        2      2      0      0      3
  CEL WILD-TYPE     35     29     17     21     10
D70V7, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           2            35
  CLUS_2           2            29
  CLUS_3           0            17
  CLUS_4           0            21
  CLUS_5           3            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        3      0      4
  CEL WILD-TYPE     68     27     17
D70V8, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           3            68
  CLUS_2           0            27
  CLUS_3           4            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEL MUTATED        0      0      0      0      2      4      1
  CEL WILD-TYPE     18      8     10      8     34     21     11
D70V9, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           0            10
  CLUS_4           0             8
  CLUS_5           2            34
  CLUS_6           4            21
  CLUS_7           1            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEL MUTATED        1      2      0      0      4      0
  CEL WILD-TYPE     16     30     13     32     12      7
D70V10, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            16
  CLUS_2           2            30
  CLUS_3           0            13
  CLUS_4           0            32
  CLUS_5           4            12
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = EIF3C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF3C MUTATED        1      5      1      2
  EIF3C WILD-TYPE     18     48     29     22
D71V1, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF3C MUTATED        6      1      1      1
  EIF3C WILD-TYPE     29     29     33     25
D71V2, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             6              29
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF3C MUTATED        2      0      1      2      0
  EIF3C WILD-TYPE     27     18     12      7     13
D71V3, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF3C MUTATED        4      0      0      1      0
  EIF3C WILD-TYPE     28     18     12      9     10
D71V4, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF3C MUTATED        2      0      3      3      1
  EIF3C WILD-TYPE     24     20     25     22     19
D71V5, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF3C MUTATED        3      6      0
  EIF3C WILD-TYPE     45     47     18
D71V6, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             3              45
  CLUS_2             6              47
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF3C MUTATED        2      3      2      1      1
  EIF3C WILD-TYPE     35     28     15     20     12
D71V7, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF3C MUTATED        7      1      1
  EIF3C WILD-TYPE     64     26     20
D71V8, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             7              64
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF3C MUTATED        1      1      1      1      3      1      1
  EIF3C WILD-TYPE     17      7      9      7     33     24     11
D71V9, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF3C MUTATED        0      3      2      4      0      0
  EIF3C WILD-TYPE     17     29     11     28     16      7
D71V10, multiclass
        clus
vv       EIF3C MUTATED EIF3C WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             2              11
  CLUS_4             4              28
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = NR4A3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A3 MUTATED        1      5      1      0
  NR4A3 WILD-TYPE     18     48     29     24
D72V1, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A3 MUTATED        2      1      2      2
  NR4A3 WILD-TYPE     33     29     32     24
D72V2, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR4A3 MUTATED        2      1      0      1      0
  NR4A3 WILD-TYPE     27     17     13      8     13
D72V3, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR4A3 MUTATED        2      1      0      1      0
  NR4A3 WILD-TYPE     30     17     12      9     10
D72V4, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR4A3 MUTATED        2      0      2      2      1
  NR4A3 WILD-TYPE     24     20     26     23     19
D72V5, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        2      5      0
  NR4A3 WILD-TYPE     46     48     18
D72V6, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR4A3 MUTATED        2      2      1      2      0
  NR4A3 WILD-TYPE     35     29     16     19     13
D72V7, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        6      1      0
  NR4A3 WILD-TYPE     65     26     21
D72V8, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NR4A3 MUTATED        0      0      3      0      3      0      1
  NR4A3 WILD-TYPE     18      8      7      8     33     25     11
D72V9, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             3               7
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NR4A3 MUTATED        1      2      2      2      0      0
  NR4A3 WILD-TYPE     16     30     11     30     16      7
D72V10, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DPYS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPYS MUTATED        2      3      4      2
  DPYS WILD-TYPE     17     50     26     22
D73V1, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            2             17
  CLUS_2            3             50
  CLUS_3            4             26
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPYS MUTATED        3      4      2      2
  DPYS WILD-TYPE     32     26     32     24
D73V2, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            3             32
  CLUS_2            4             26
  CLUS_3            2             32
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPYS MUTATED        2      3      0      1      2
  DPYS WILD-TYPE     27     15     13      8     11
D73V3, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            2             27
  CLUS_2            3             15
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPYS MUTATED        3      3      1      0      1
  DPYS WILD-TYPE     29     15     11     10      9
D73V4, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            3             29
  CLUS_2            3             15
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPYS MUTATED        1      4      3      2      1
  DPYS WILD-TYPE     25     16     25     23     19
D73V5, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             16
  CLUS_3            3             25
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPYS MUTATED        5      2      4
  DPYS WILD-TYPE     43     51     14
D73V6, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            5             43
  CLUS_2            2             51
  CLUS_3            4             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPYS MUTATED        3      2      1      4      1
  DPYS WILD-TYPE     34     29     16     17     12
D73V7, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            3             34
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            4             17
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPYS MUTATED        6      1      4
  DPYS WILD-TYPE     65     26     17
D73V8, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            6             65
  CLUS_2            1             26
  CLUS_3            4             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DPYS MUTATED        2      0      1      1      3      1      3
  DPYS WILD-TYPE     16      8      9      7     33     24      9
D73V9, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            3              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DPYS MUTATED        2      3      1      2      1      2
  DPYS WILD-TYPE     15     29     12     30     15      5
D73V10, multiclass
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  CLUS_1            2             15
  CLUS_2            3             29
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            2              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = LRIG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        1      3      5      2
  LRIG1 WILD-TYPE     18     50     25     22
D74V1, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             5              25
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        4      2      1      4
  LRIG1 WILD-TYPE     31     28     33     22
D74V2, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRIG1 MUTATED        0      1      1      2      1
  LRIG1 WILD-TYPE     29     17     12      7     12
D74V3, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRIG1 MUTATED        1      2      1      1      0
  LRIG1 WILD-TYPE     31     16     11      9     10
D74V4, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRIG1 MUTATED        3      2      1      2      3
  LRIG1 WILD-TYPE     23     18     27     23     17
D74V5, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        4      6      1
  LRIG1 WILD-TYPE     44     47     17
D74V6, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             6              47
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRIG1 MUTATED        1      5      0      3      2
  LRIG1 WILD-TYPE     36     26     17     18     11
D74V7, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             5              26
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        7      4      0
  LRIG1 WILD-TYPE     64     23     21
D74V8, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             4              23
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRIG1 MUTATED        1      2      1      1      1      3      1
  LRIG1 WILD-TYPE     17      6      9      7     35     22     11
D74V9, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             3              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRIG1 MUTATED        3      1      1      3      1      1
  LRIG1 WILD-TYPE     14     31     12     29     15      6
D74V10, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = EPS8L3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS8L3 MUTATED        0      2      4      2
  EPS8L3 WILD-TYPE     19     51     26     22
D75V1, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              4               26
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS8L3 MUTATED        1      2      2      3
  EPS8L3 WILD-TYPE     34     28     32     23
D75V2, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              2               28
  CLUS_3              2               32
  CLUS_4              3               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS8L3 MUTATED        0      2      2      1      1
  EPS8L3 WILD-TYPE     29     16     11      8     12
D75V3, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              2               16
  CLUS_3              2               11
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS8L3 MUTATED        1      2      1      0      2
  EPS8L3 WILD-TYPE     31     16     11     10      8
D75V4, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS8L3 MUTATED        0      1      2      2      2
  EPS8L3 WILD-TYPE     26     19     26     23     18
D75V5, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              2               26
  CLUS_4              2               23
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPS8L3 MUTATED        4      2      1
  EPS8L3 WILD-TYPE     44     51     17
D75V6, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS8L3 MUTATED        1      2      0      3      1
  EPS8L3 WILD-TYPE     36     29     17     18     12
D75V7, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              3               18
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPS8L3 MUTATED        5      1      1
  EPS8L3 WILD-TYPE     66     26     20
D75V8, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPS8L3 MUTATED        0      0      1      1      2      2      0
  EPS8L3 WILD-TYPE     18      8      9      7     34     23     12
D75V9, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPS8L3 MUTATED        0      2      1      2      1      0
  EPS8L3 WILD-TYPE     17     30     12     30     15      7
D75V10, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = RIOK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIOK1 MUTATED        1      3      3      1
  RIOK1 WILD-TYPE     18     50     27     23
D76V1, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIOK1 MUTATED        2      1      3      2
  RIOK1 WILD-TYPE     33     29     31     24
D76V2, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIOK1 MUTATED        1      1      1      1      2
  RIOK1 WILD-TYPE     28     17     12      8     11
D76V3, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIOK1 MUTATED        2      1      2      0      1
  RIOK1 WILD-TYPE     30     17     10     10      9
D76V4, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIOK1 MUTATED        2      2      1      2      1
  RIOK1 WILD-TYPE     24     18     27     23     19
D76V5, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED        3      4      1
  RIOK1 WILD-TYPE     45     49     17
D76V6, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIOK1 MUTATED        3      1      1      2      1
  RIOK1 WILD-TYPE     34     30     16     19     12
D76V7, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIOK1 MUTATED        6      1      1
  RIOK1 WILD-TYPE     65     26     20
D76V8, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIOK1 MUTATED        1      1      1      0      2      2      0
  RIOK1 WILD-TYPE     17      7      9      8     34     23     12
D76V9, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RIOK1 MUTATED        1      3      0      2      1      0
  RIOK1 WILD-TYPE     16     29     13     30     15      7
D76V10, multiclass
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = RBM10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        0      5      4      2
  RBM10 WILD-TYPE     19     48     26     22
D77V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             5              48
  CLUS_3             4              26
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        5      3      1      2
  RBM10 WILD-TYPE     30     27     33     24
D77V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             3              27
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        3      2      0      2      1
  RBM10 WILD-TYPE     26     16     13      7     12
D77V3, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        5      1      0      1      1
  RBM10 WILD-TYPE     27     17     12      9      9
D77V4, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        2      2      2      3      1
  RBM10 WILD-TYPE     24     18     26     22     19
D77V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        5      4      1
  RBM10 WILD-TYPE     43     49     17
D77V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        3      2      1      2      2
  RBM10 WILD-TYPE     34     29     16     19     11
D77V7, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        5      3      2
  RBM10 WILD-TYPE     66     24     19
D77V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             3              24
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM10 MUTATED        2      1      2      1      1      1      2
  RBM10 WILD-TYPE     16      7      8      7     35     24     10
D77V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM10 MUTATED        1      3      0      5      1      0
  RBM10 WILD-TYPE     16     29     13     27     15      7
D77V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             5              27
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = USP40 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP40 MUTATED        2      5      1      2
  USP40 WILD-TYPE     17     48     29     22
D78V1, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP40 MUTATED        5      0      4      1
  USP40 WILD-TYPE     30     30     30     25
D78V2, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             0              30
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP40 MUTATED        2      0      1      1      1
  USP40 WILD-TYPE     27     18     12      8     12
D78V3, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP40 MUTATED        3      1      1      0      0
  USP40 WILD-TYPE     29     17     11     10     10
D78V4, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP40 MUTATED        4      1      3      1      1
  USP40 WILD-TYPE     22     19     25     24     19
D78V5, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP40 MUTATED        3      6      1
  USP40 WILD-TYPE     45     47     17
D78V6, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             6              47
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP40 MUTATED        6      1      0      1      2
  USP40 WILD-TYPE     31     30     17     20     11
D78V7, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             6              31
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP40 MUTATED        8      0      2
  USP40 WILD-TYPE     63     27     19
D78V8, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP40 MUTATED        0      1      1      1      5      0      2
  USP40 WILD-TYPE     18      7      9      7     31     25     10
D78V9, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             5              31
  CLUS_6             0              25
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP40 MUTATED        4      2      1      3      0      0
  USP40 WILD-TYPE     13     30     12     29     16      7
D78V10, multiclass
        clus
vv       USP40 MUTATED USP40 WILD-TYPE
  CLUS_1             4              13
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = NAPSA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPSA MUTATED        1      2      3      2
  NAPSA WILD-TYPE     18     51     27     22
D79V1, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             3              27
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPSA MUTATED        3      2      0      3
  NAPSA WILD-TYPE     32     28     34     23
D79V2, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             0              34
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPSA MUTATED        1      2      1      2      0
  NAPSA WILD-TYPE     28     16     12      7     13
D79V3, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPSA MUTATED        3      1      1      1      0
  NAPSA WILD-TYPE     29     17     11      9     10
D79V4, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPSA MUTATED        1      0      1      3      2
  NAPSA WILD-TYPE     25     20     27     22     18
D79V5, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAPSA MUTATED        3      3      1
  NAPSA WILD-TYPE     45     50     17
D79V6, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPSA MUTATED        1      3      2      1      0
  NAPSA WILD-TYPE     36     28     15     20     13
D79V7, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAPSA MUTATED        5      1      1
  NAPSA WILD-TYPE     66     26     20
D79V8, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAPSA MUTATED        0      1      2      0      2      2      0
  NAPSA WILD-TYPE     18      7      8      8     34     23     12
D79V9, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAPSA MUTATED        0      3      0      3      1      0
  NAPSA WILD-TYPE     17     29     13     29     15      7
D79V10, multiclass
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = GPR25 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR25 MUTATED        0      3      1      1
  GPR25 WILD-TYPE     19     50     29     23
D80V1, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR25 MUTATED        1      2      2      0
  GPR25 WILD-TYPE     34     28     32     26
D80V2, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR25 MUTATED        0      1      1      1      0
  GPR25 WILD-TYPE     29     17     12      8     13
D80V3, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR25 MUTATED        1      1      0      0      1
  GPR25 WILD-TYPE     31     17     12     10      9
D80V4, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR25 MUTATED        1      0      1      3      0
  GPR25 WILD-TYPE     25     20     27     22     20
D80V5, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        4      1      0
  GPR25 WILD-TYPE     44     52     18
D80V6, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR25 MUTATED        2      0      2      1      0
  GPR25 WILD-TYPE     35     31     15     20     13
D80V7, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        3      2      0
  GPR25 WILD-TYPE     68     25     21
D80V8, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR25 MUTATED        1      0      1      0      2      1      0
  GPR25 WILD-TYPE     17      8      9      8     34     24     12
D80V9, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR25 MUTATED        0      2      0      3      0      0
  GPR25 WILD-TYPE     17     30     13     29     16      7
D80V10, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = SETD1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD1A MUTATED        3      5      3      0
  SETD1A WILD-TYPE     16     48     27     24
D81V1, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              3               16
  CLUS_2              5               48
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD1A MUTATED        3      2      4      2
  SETD1A WILD-TYPE     32     28     30     24
D81V2, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              4               30
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD1A MUTATED        3      1      1      2      0
  SETD1A WILD-TYPE     26     17     12      7     13
D81V3, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              3               26
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD1A MUTATED        3      1      1      2      0
  SETD1A WILD-TYPE     29     17     11      8     10
D81V4, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              2                8
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD1A MUTATED        2      2      4      3      0
  SETD1A WILD-TYPE     24     18     24     22     20
D81V5, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               18
  CLUS_3              4               24
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        3      6      2
  SETD1A WILD-TYPE     45     47     16
D81V6, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              3               45
  CLUS_2              6               47
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD1A MUTATED        5      2      2      0      2
  SETD1A WILD-TYPE     32     29     15     21     11
D81V7, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              5               32
  CLUS_2              2               29
  CLUS_3              2               15
  CLUS_4              0               21
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        6      3      2
  SETD1A WILD-TYPE     65     24     19
D81V8, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              6               65
  CLUS_2              3               24
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD1A MUTATED        2      3      0      0      3      2      1
  SETD1A WILD-TYPE     16      5     10      8     33     23     11
D81V9, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              2               16
  CLUS_2              3                5
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETD1A MUTATED        3      3      0      3      2      0
  SETD1A WILD-TYPE     14     29     13     29     14      7
D81V10, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              3               14
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = SEC63 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC63 MUTATED        0      6      1      1
  SEC63 WILD-TYPE     19     47     29     23
D82V1, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             6              47
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC63 MUTATED        2      0      3      3
  SEC63 WILD-TYPE     33     30     31     23
D82V2, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC63 MUTATED        2      1      1      2      1
  SEC63 WILD-TYPE     27     17     12      7     12
D82V3, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC63 MUTATED        2      0      1      2      2
  SEC63 WILD-TYPE     30     18     11      8      8
D82V4, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             2               8
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC63 MUTATED        2      0      2      1      3
  SEC63 WILD-TYPE     24     20     26     24     17
D82V5, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEC63 MUTATED        6      2      0
  SEC63 WILD-TYPE     42     51     18
D82V6, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC63 MUTATED        2      4      1      1      0
  SEC63 WILD-TYPE     35     27     16     20     13
D82V7, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             4              27
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEC63 MUTATED        6      1      1
  SEC63 WILD-TYPE     65     26     20
D82V8, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEC63 MUTATED        1      0      1      0      3      3      0
  SEC63 WILD-TYPE     17      8      9      8     33     22     12
D82V9, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEC63 MUTATED        1      2      1      2      2      0
  SEC63 WILD-TYPE     16     30     12     30     14      7
D82V10, multiclass
        clus
vv       SEC63 MUTATED SEC63 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = GAS2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS2L2 MUTATED        2      6      3      1
  GAS2L2 WILD-TYPE     17     47     27     23
D83V1, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              6               47
  CLUS_3              3               27
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS2L2 MUTATED        5      2      5      0
  GAS2L2 WILD-TYPE     30     28     29     26
D83V2, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              5               30
  CLUS_2              2               28
  CLUS_3              5               29
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS2L2 MUTATED        4      2      1      1      2
  GAS2L2 WILD-TYPE     25     16     12      8     11
D83V3, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              4               25
  CLUS_2              2               16
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS2L2 MUTATED        5      2      1      0      2
  GAS2L2 WILD-TYPE     27     16     11     10      8
D83V4, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              5               27
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS2L2 MUTATED        1      1      4      3      1
  GAS2L2 WILD-TYPE     25     19     24     22     19
D83V5, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              4               24
  CLUS_4              3               22
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        5      5      0
  GAS2L2 WILD-TYPE     43     48     18
D83V6, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              5               43
  CLUS_2              5               48
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS2L2 MUTATED        4      2      1      2      1
  GAS2L2 WILD-TYPE     33     29     16     19     12
D83V7, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        7      2      1
  GAS2L2 WILD-TYPE     64     25     20
D83V8, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              2               25
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAS2L2 MUTATED        1      0      2      2      4      1      0
  GAS2L2 WILD-TYPE     17      8      8      6     32     24     12
D83V9, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              2                6
  CLUS_5              4               32
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAS2L2 MUTATED        2      2      2      3      1      0
  GAS2L2 WILD-TYPE     15     30     11     29     15      7
D83V10, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              2               30
  CLUS_3              2               11
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = PHF8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF8 MUTATED        4      4      2      1
  PHF8 WILD-TYPE     15     49     28     23
D84V1, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            4             15
  CLUS_2            4             49
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF8 MUTATED        2      2      5      2
  PHF8 WILD-TYPE     33     28     29     24
D84V2, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             28
  CLUS_3            5             29
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF8 MUTATED        5      0      2      0      2
  PHF8 WILD-TYPE     24     18     11      9     11
D84V3, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            5             24
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            0              9
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF8 MUTATED        5      0      1      1      2
  PHF8 WILD-TYPE     27     18     11      9      8
D84V4, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            5             27
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF8 MUTATED        3      0      4      1      2
  PHF8 WILD-TYPE     23     20     24     24     18
D84V5, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            0             20
  CLUS_3            4             24
  CLUS_4            1             24
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF8 MUTATED        3      7      0
  PHF8 WILD-TYPE     45     46     18
D84V6, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            7             46
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF8 MUTATED        4      3      1      2      0
  PHF8 WILD-TYPE     33     28     16     19     13
D84V7, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            3             28
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF8 MUTATED        9      1      0
  PHF8 WILD-TYPE     62     26     21
D84V8, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            9             62
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF8 MUTATED        0      0      0      1      5      2      1
  PHF8 WILD-TYPE     18      8     10      7     31     23     11
D84V9, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            5             31
  CLUS_6            2             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF8 MUTATED        0      5      2      1      1      0
  PHF8 WILD-TYPE     17     27     11     31     15      7
D84V10, multiclass
        clus
vv       PHF8 MUTATED PHF8 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            5             27
  CLUS_3            2             11
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = SLC39A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A5 MUTATED        1      5      1      1
  SLC39A5 WILD-TYPE     18     48     29     23
D85V1, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               5                48
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A5 MUTATED        4      0      1      3
  SLC39A5 WILD-TYPE     31     30     33     23
D85V2, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               4                31
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A5 MUTATED        2      1      0      1      2
  SLC39A5 WILD-TYPE     27     17     13      8     11
D85V3, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A5 MUTATED        2      1      1      1      1
  SLC39A5 WILD-TYPE     30     17     11      9      9
D85V4, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               1                 9
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A5 MUTATED        3      0      1      2      2
  SLC39A5 WILD-TYPE     23     20     27     23     18
D85V5, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        3      4      1
  SLC39A5 WILD-TYPE     45     49     17
D85V6, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               4                49
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A5 MUTATED        2      2      2      0      2
  SLC39A5 WILD-TYPE     35     29     15     21     11
D85V7, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               2                29
  CLUS_3               2                15
  CLUS_4               0                21
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        6      1      1
  SLC39A5 WILD-TYPE     65     26     20
D85V8, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               6                65
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC39A5 MUTATED        2      0      1      1      3      1      0
  SLC39A5 WILD-TYPE     16      8      9      7     33     24     12
D85V9, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC39A5 MUTATED        1      3      0      2      2      0
  SLC39A5 WILD-TYPE     16     29     13     30     14      7
D85V10, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               3                29
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               2                14
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = FAM82A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM82A2 MUTATED        1      3      4      0
  FAM82A2 WILD-TYPE     18     50     26     24
D86V1, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               3                50
  CLUS_3               4                26
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM82A2 MUTATED        3      0      3      2
  FAM82A2 WILD-TYPE     32     30     31     24
D86V2, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                30
  CLUS_3               3                31
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A2 MUTATED        0      1      0      1      2
  FAM82A2 WILD-TYPE     29     17     13      8     11
D86V3, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A2 MUTATED        1      1      1      0      1
  FAM82A2 WILD-TYPE     31     17     11     10      9
D86V4, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A2 MUTATED        1      0      4      1      2
  FAM82A2 WILD-TYPE     25     20     24     24     18
D86V5, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               4                24
  CLUS_4               1                24
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM82A2 MUTATED        1      6      1
  FAM82A2 WILD-TYPE     47     47     17
D86V6, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               6                47
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A2 MUTATED        1      4      0      3      0
  FAM82A2 WILD-TYPE     36     27     17     18     13
D86V7, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               4                27
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM82A2 MUTATED        7      0      1
  FAM82A2 WILD-TYPE     64     27     20
D86V8, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               7                64
  CLUS_2               0                27
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM82A2 MUTATED        0      0      1      1      2      3      0
  FAM82A2 WILD-TYPE     18      8      9      7     34     22     12
D86V9, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               3                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM82A2 MUTATED        0      4      1      1      1      0
  FAM82A2 WILD-TYPE     17     28     12     31     15      7
D86V10, multiclass
        clus
vv       FAM82A2 MUTATED FAM82A2 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               4                28
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = CHGA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHGA MUTATED        0      3      4      4
  CHGA WILD-TYPE     19     50     26     20
D87V1, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            4             26
  CLUS_4            4             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHGA MUTATED        2      4      3      2
  CHGA WILD-TYPE     33     26     31     24
D87V2, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            2             33
  CLUS_2            4             26
  CLUS_3            3             31
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHGA MUTATED        3      0      2      3      0
  CHGA WILD-TYPE     26     18     11      6     13
D87V3, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            3             26
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            3              6
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHGA MUTATED        4      0      0      3      1
  CHGA WILD-TYPE     28     18     12      7      9
D87V4, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            4             28
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            3              7
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHGA MUTATED        1      1      3      4      2
  CHGA WILD-TYPE     25     19     25     21     18
D87V5, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            3             25
  CLUS_4            4             21
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHGA MUTATED        5      5      1
  CHGA WILD-TYPE     43     48     17
D87V6, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            5             43
  CLUS_2            5             48
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHGA MUTATED        1      4      2      3      1
  CHGA WILD-TYPE     36     27     15     18     12
D87V7, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            1             36
  CLUS_2            4             27
  CLUS_3            2             15
  CLUS_4            3             18
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHGA MUTATED        6      4      1
  CHGA WILD-TYPE     65     23     20
D87V8, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            6             65
  CLUS_2            4             23
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHGA MUTATED        2      1      2      0      2      4      0
  CHGA WILD-TYPE     16      7      8      8     34     21     12
D87V9, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1              7
  CLUS_3            2              8
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            4             21
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHGA MUTATED        1      1      2      5      2      0
  CHGA WILD-TYPE     16     31     11     27     14      7
D87V10, multiclass
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            2             11
  CLUS_4            5             27
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = EGR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        2      2      2      1
  EGR1 WILD-TYPE     17     51     28     23
D88V1, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        2      2      1      2
  EGR1 WILD-TYPE     33     28     33     24
D88V2, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        3      2      0      1      1
  EGR1 WILD-TYPE     26     16     13      8     12
D88V3, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            3             26
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        4      3      0      0      0
  EGR1 WILD-TYPE     28     15     12     10     10
D88V4, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            3             15
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        2      0      0      3      2
  EGR1 WILD-TYPE     24     20     28     22     18
D88V5, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            3             22
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        4      3      0
  EGR1 WILD-TYPE     44     50     18
D88V6, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        1      3      2      1      0
  EGR1 WILD-TYPE     36     28     15     20     13
D88V7, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            3             28
  CLUS_3            2             15
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        5      2      0
  EGR1 WILD-TYPE     66     25     21
D88V8, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EGR1 MUTATED        1      1      2      2      1      0      0
  EGR1 WILD-TYPE     17      7      8      6     35     25     12
D88V9, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            2              8
  CLUS_4            2              6
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EGR1 MUTATED        1      0      3      3      0      0
  EGR1 WILD-TYPE     16     32     10     29     16      7
D88V10, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0             32
  CLUS_3            3             10
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = OLIG3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLIG3 MUTATED        3      3      1      3
  OLIG3 WILD-TYPE     16     50     29     21
D89V1, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLIG3 MUTATED        2      1      4      3
  OLIG3 WILD-TYPE     33     29     30     23
D89V2, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             4              30
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLIG3 MUTATED        4      2      0      2      1
  OLIG3 WILD-TYPE     25     16     13      7     12
D89V3, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLIG3 MUTATED        6      2      0      0      1
  OLIG3 WILD-TYPE     26     16     12     10      9
D89V4, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             6              26
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLIG3 MUTATED        1      1      5      1      2
  OLIG3 WILD-TYPE     25     19     23     24     18
D89V5, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             5              23
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        3      7      0
  OLIG3 WILD-TYPE     45     46     18
D89V6, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             7              46
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLIG3 MUTATED        4      3      1      1      1
  OLIG3 WILD-TYPE     33     28     16     20     12
D89V7, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        9      1      0
  OLIG3 WILD-TYPE     62     26     21
D89V8, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             9              62
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OLIG3 MUTATED        1      0      2      2      5      0      0
  OLIG3 WILD-TYPE     17      8      8      6     31     25     12
D89V9, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             2               6
  CLUS_5             5              31
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OLIG3 MUTATED        1      5      2      2      0      0
  OLIG3 WILD-TYPE     16     27     11     30     16      7
D89V10, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             5              27
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = C14ORF49 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF49 MUTATED        1      1      1      5
  C14ORF49 WILD-TYPE     18     52     29     19
D90V1, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                1                 52
  CLUS_3                1                 29
  CLUS_4                5                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF49 MUTATED        3      1      2      2
  C14ORF49 WILD-TYPE     32     29     32     24
D90V2, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                1                 29
  CLUS_3                2                 32
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF49 MUTATED        4      0      1      0      0
  C14ORF49 WILD-TYPE     25     18     12      9     13
D90V3, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                4                 25
  CLUS_2                0                 18
  CLUS_3                1                 12
  CLUS_4                0                  9
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF49 MUTATED        3      0      0      1      1
  C14ORF49 WILD-TYPE     29     18     12      9      9
D90V4, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                3                 29
  CLUS_2                0                 18
  CLUS_3                0                 12
  CLUS_4                1                  9
  CLUS_5                1                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF49 MUTATED        1      1      3      1      2
  C14ORF49 WILD-TYPE     25     19     25     24     18
D90V5, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                3                 25
  CLUS_4                1                 24
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        1      5      2
  C14ORF49 WILD-TYPE     47     48     16
D90V6, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                5                 48
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF49 MUTATED        2      1      0      4      1
  C14ORF49 WILD-TYPE     35     30     17     17     12
D90V7, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                1                 30
  CLUS_3                0                 17
  CLUS_4                4                 17
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        6      0      2
  C14ORF49 WILD-TYPE     65     27     19
D90V8, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                6                 65
  CLUS_2                0                 27
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF49 MUTATED        1      0      0      1      4      1      1
  C14ORF49 WILD-TYPE     17      8     10      7     32     24     11
D90V9, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                0                 10
  CLUS_4                1                  7
  CLUS_5                4                 32
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF49 MUTATED        0      2      2      1      2      1
  C14ORF49 WILD-TYPE     17     30     11     31     14      6
D90V10, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                2                 30
  CLUS_3                2                 11
  CLUS_4                1                 31
  CLUS_5                2                 14
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = TOB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        1      4      0      1
  TOB1 WILD-TYPE     18     49     30     23
D91V1, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            4             49
  CLUS_3            0             30
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        2      1      2      1
  TOB1 WILD-TYPE     33     29     32     25
D91V2, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOB1 MUTATED        1      2      0      1      0
  TOB1 WILD-TYPE     28     16     13      8     13
D91V3, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOB1 MUTATED        0      2      0      2      0
  TOB1 WILD-TYPE     32     16     12      8     10
D91V4, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            0             32
  CLUS_2            2             16
  CLUS_3            0             12
  CLUS_4            2              8
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOB1 MUTATED        2      1      2      1      0
  TOB1 WILD-TYPE     24     19     26     24     20
D91V5, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             19
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOB1 MUTATED        2      3      1
  TOB1 WILD-TYPE     46     50     17
D91V6, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOB1 MUTATED        3      1      0      2      0
  TOB1 WILD-TYPE     34     30     17     19     13
D91V7, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOB1 MUTATED        5      0      1
  TOB1 WILD-TYPE     66     27     20
D91V8, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOB1 MUTATED        0      0      1      0      2      2      1
  TOB1 WILD-TYPE     18      8      9      8     34     23     11
D91V9, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOB1 MUTATED        0      3      1      1      0      1
  TOB1 WILD-TYPE     17     29     12     31     16      6
D91V10, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = MEPCE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPCE MUTATED        1      5      3      1
  MEPCE WILD-TYPE     18     48     27     23
D92V1, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPCE MUTATED        3      2      4      1
  MEPCE WILD-TYPE     32     28     30     25
D92V2, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        3      1      0      1      0
  MEPCE WILD-TYPE     26     17     13      8     13
D92V3, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        3      1      0      1      0
  MEPCE WILD-TYPE     29     17     12      9     10
D92V4, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        4      3      1      1      1
  MEPCE WILD-TYPE     22     17     27     24     19
D92V5, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             4              22
  CLUS_2             3              17
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        2      6      2
  MEPCE WILD-TYPE     46     47     16
D92V6, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             2              46
  CLUS_2             6              47
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        3      1      0      5      1
  MEPCE WILD-TYPE     34     30     17     16     12
D92V7, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             5              16
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        8      1      1
  MEPCE WILD-TYPE     63     26     20
D92V8, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             8              63
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MEPCE MUTATED        0      0      2      1      3      1      2
  MEPCE WILD-TYPE     18      8      8      7     33     24     10
D92V9, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MEPCE MUTATED        2      2      2      1      0      2
  MEPCE WILD-TYPE     15     30     11     31     16      5
D92V10, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             2               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = TXLNG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        0      1      5      1
  TXLNG WILD-TYPE     19     52     25     23
D93V1, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             5              25
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        3      0      1      3
  TXLNG WILD-TYPE     32     30     33     23
D93V2, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXLNG MUTATED        2      2      0      1      2
  TXLNG WILD-TYPE     27     16     13      8     11
D93V3, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXLNG MUTATED        4      1      0      0      2
  TXLNG WILD-TYPE     28     17     12     10      8
D93V4, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXLNG MUTATED        1      1      1      1      3
  TXLNG WILD-TYPE     25     19     27     24     17
D93V5, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        2      3      2
  TXLNG WILD-TYPE     46     50     16
D93V6, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXLNG MUTATED        2      4      0      1      0
  TXLNG WILD-TYPE     35     27     17     20     13
D93V7, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             2              35
  CLUS_2             4              27
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        4      0      3
  TXLNG WILD-TYPE     67     27     18
D93V8, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXLNG MUTATED        0      1      2      1      0      3      0
  TXLNG WILD-TYPE     18      7      8      7     36     22     12
D93V9, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TXLNG MUTATED        0      2      1      1      3      0
  TXLNG WILD-TYPE     17     30     12     31     13      7
D93V10, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             3              13
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = TTK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTK MUTATED        1      3      5      3
  TTK WILD-TYPE     18     50     25     21
D94V1, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           1            18
  CLUS_2           3            50
  CLUS_3           5            25
  CLUS_4           3            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTK MUTATED        3      3      4      2
  TTK WILD-TYPE     32     27     30     24
D94V2, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           3            32
  CLUS_2           3            27
  CLUS_3           4            30
  CLUS_4           2            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTK MUTATED        2      1      3      2      0
  TTK WILD-TYPE     27     17     10      7     13
D94V3, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           2            27
  CLUS_2           1            17
  CLUS_3           3            10
  CLUS_4           2             7
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTK MUTATED        3      1      2      1      1
  TTK WILD-TYPE     29     17     10      9      9
D94V4, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           3            29
  CLUS_2           1            17
  CLUS_3           2            10
  CLUS_4           1             9
  CLUS_5           1             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTK MUTATED        2      3      2      3      2
  TTK WILD-TYPE     24     17     26     22     18
D94V5, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           2            24
  CLUS_2           3            17
  CLUS_3           2            26
  CLUS_4           3            22
  CLUS_5           2            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        5      6      1
  TTK WILD-TYPE     43     47     17
D94V6, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           5            43
  CLUS_2           6            47
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTK MUTATED        3      3      2      3      1
  TTK WILD-TYPE     34     28     15     18     12
D94V7, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           3            34
  CLUS_2           3            28
  CLUS_3           2            15
  CLUS_4           3            18
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        8      2      2
  TTK WILD-TYPE     63     25     19
D94V8, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           8            63
  CLUS_2           2            25
  CLUS_3           2            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTK MUTATED        2      0      1      0      2      5      1
  TTK WILD-TYPE     16      8      9      8     34     20     11
D94V9, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           2            16
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           0             8
  CLUS_5           2            34
  CLUS_6           5            20
  CLUS_7           1            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TTK MUTATED        0      3      1      4      2      1
  TTK WILD-TYPE     17     29     12     28     14      6
D94V10, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           0            17
  CLUS_2           3            29
  CLUS_3           1            12
  CLUS_4           4            28
  CLUS_5           2            14
  CLUS_6           1             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = TMCO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO1 MUTATED        1      4      3      0
  TMCO1 WILD-TYPE     18     49     27     24
D95V1, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO1 MUTATED        2      0      3      3
  TMCO1 WILD-TYPE     33     30     31     23
D95V2, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO1 MUTATED        0      1      2      2      1
  TMCO1 WILD-TYPE     29     17     11      7     12
D95V3, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO1 MUTATED        1      1      3      1      0
  TMCO1 WILD-TYPE     31     17      9      9     10
D95V4, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             3               9
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO1 MUTATED        2      1      1      2      2
  TMCO1 WILD-TYPE     24     19     27     23     18
D95V5, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO1 MUTATED        4      3      1
  TMCO1 WILD-TYPE     44     50     17
D95V6, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO1 MUTATED        2      3      1      1      1
  TMCO1 WILD-TYPE     35     28     16     20     12
D95V7, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO1 MUTATED        6      1      1
  TMCO1 WILD-TYPE     65     26     20
D95V8, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMCO1 MUTATED        0      1      1      0      3      3      0
  TMCO1 WILD-TYPE     18      7      9      8     33     22     12
D95V9, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMCO1 MUTATED        1      3      0      2      2      0
  TMCO1 WILD-TYPE     16     29     13     30     14      7
D95V10, multiclass
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      2      4      3
  NUDT11 WILD-TYPE     19     51     26     21
D96V1, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              4               26
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        4      3      2      0
  NUDT11 WILD-TYPE     31     27     32     26
D96V2, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              3               27
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        2      3      0      2      1
  NUDT11 WILD-TYPE     27     15     13      7     12
D96V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              3               15
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        3      4      0      1      0
  NUDT11 WILD-TYPE     29     14     12      9     10
D96V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              4               14
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        2      1      3      3      0
  NUDT11 WILD-TYPE     24     19     25     22     20
D96V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              1               19
  CLUS_3              3               25
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        4      4      1
  NUDT11 WILD-TYPE     44     49     17
D96V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        2      2      2      2      1
  NUDT11 WILD-TYPE     35     29     15     19     12
D96V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              2               15
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        5      3      1
  NUDT11 WILD-TYPE     66     24     20
D96V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              3               24
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        3      0      1      0      3      2      0
  NUDT11 WILD-TYPE     15      8      9      8     33     23     12
D96V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUDT11 MUTATED        1      2      1      4      1      0
  NUDT11 WILD-TYPE     16     30     12     28     15      7
D96V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              4               28
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = PTPRF MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRF MUTATED        4      5      3      1
  PTPRF WILD-TYPE     15     48     27     23
D97V1, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             4              15
  CLUS_2             5              48
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRF MUTATED        5      3      4      1
  PTPRF WILD-TYPE     30     27     30     25
D97V2, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             5              30
  CLUS_2             3              27
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRF MUTATED        2      2      1      2      2
  PTPRF WILD-TYPE     27     16     12      7     11
D97V3, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRF MUTATED        3      2      1      1      2
  PTPRF WILD-TYPE     29     16     11      9      8
D97V4, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             3              29
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRF MUTATED        2      0      3      7      1
  PTPRF WILD-TYPE     24     20     25     18     19
D97V5, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             3              25
  CLUS_4             7              18
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRF MUTATED       10      2      1
  PTPRF WILD-TYPE     38     51     17
D97V6, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1            10              38
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRF MUTATED        6      2      3      1      1
  PTPRF WILD-TYPE     31     29     14     20     12
D97V7, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             6              31
  CLUS_2             2              29
  CLUS_3             3              14
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRF MUTATED        8      4      1
  PTPRF WILD-TYPE     63     23     20
D97V8, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             8              63
  CLUS_2             4              23
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRF MUTATED        3      0      1      2      5      2      0
  PTPRF WILD-TYPE     15      8      9      6     31     23     12
D97V9, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             3              15
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             5              31
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPRF MUTATED        2      3      0      7      1      0
  PTPRF WILD-TYPE     15     29     13     25     15      7
D97V10, multiclass
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  CLUS_1             2              15
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             7              25
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = YTHDF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF1 MUTATED        3      2      2      1
  YTHDF1 WILD-TYPE     16     51     28     23
D98V1, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              3               16
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF1 MUTATED        1      2      1      4
  YTHDF1 WILD-TYPE     34     28     33     22
D98V2, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              2               28
  CLUS_3              1               33
  CLUS_4              4               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YTHDF1 MUTATED        4      1      0      0      0
  YTHDF1 WILD-TYPE     25     17     13      9     13
D98V3, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              4               25
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YTHDF1 MUTATED        4      1      0      0      0
  YTHDF1 WILD-TYPE     28     17     12     10     10
D98V4, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YTHDF1 MUTATED        1      2      1      2      2
  YTHDF1 WILD-TYPE     25     18     27     23     18
D98V5, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  YTHDF1 MUTATED        4      2      2
  YTHDF1 WILD-TYPE     44     51     16
D98V6, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              2               51
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YTHDF1 MUTATED        1      3      2      0      2
  YTHDF1 WILD-TYPE     36     28     15     21     11
D98V7, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              3               28
  CLUS_3              2               15
  CLUS_4              0               21
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  YTHDF1 MUTATED        3      3      2
  YTHDF1 WILD-TYPE     68     24     19
D98V8, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              3               24
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YTHDF1 MUTATED        1      1      0      1      1      3      1
  YTHDF1 WILD-TYPE     17      7     10      7     35     22     11
D98V9, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              3               22
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YTHDF1 MUTATED        2      0      1      2      3      0
  YTHDF1 WILD-TYPE     15     32     12     30     13      7
D98V10, multiclass
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              3               13
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = AAMP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        2      2      1      1
  AAMP WILD-TYPE     17     51     29     23
D99V1, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        2      3      0      1
  AAMP WILD-TYPE     33     27     34     25
D99V2, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2             33
  CLUS_2            3             27
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        2      0      1      1      0
  AAMP WILD-TYPE     27     18     12      8     13
D99V3, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        2      0      0      1      1
  AAMP WILD-TYPE     30     18     12      9      9
D99V4, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        0      2      0      3      1
  AAMP WILD-TYPE     26     18     28     22     19
D99V5, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            3             22
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        4      0      2
  AAMP WILD-TYPE     44     53     16
D99V6, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            4             44
  CLUS_2            0             53
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        3      0      1      0      2
  AAMP WILD-TYPE     34     31     16     21     11
D99V7, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            3             34
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            0             21
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        2      2      2
  AAMP WILD-TYPE     69     25     19
D99V8, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AAMP MUTATED        1      0      0      1      1      2      1
  AAMP WILD-TYPE     17      8     10      7     35     23     11
D99V9, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            2             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AAMP MUTATED        1      0      0      3      2      0
  AAMP WILD-TYPE     16     32     13     29     14      7
D99V10, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = RAI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        1      2      2      1
  RAI1 WILD-TYPE     18     51     28     23
D100V1, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        3      2      1      0
  RAI1 WILD-TYPE     32     28     33     26
D100V2, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        3      0      0      1      0
  RAI1 WILD-TYPE     26     18     13      8     13
D100V3, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            3             26
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        4      0      0      0      0
  RAI1 WILD-TYPE     28     18     12     10     10
D100V4, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        0      1      0      5      0
  RAI1 WILD-TYPE     26     19     28     20     20
D100V5, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            0             28
  CLUS_4            5             20
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED        5      1      0
  RAI1 WILD-TYPE     43     52     18
D100V6, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            5             43
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        2      0      2      2      0
  RAI1 WILD-TYPE     35     31     15     19     13
D100V7, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            2             15
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED        3      3      0
  RAI1 WILD-TYPE     68     24     21
D100V8, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            3             24
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAI1 MUTATED        2      0      2      0      0      2      0
  RAI1 WILD-TYPE     16      8      8      8     36     23     12
D100V9, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAI1 MUTATED        0      1      0      5      0      0
  RAI1 WILD-TYPE     17     31     13     27     16      7
D100V10, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            5             27
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = PDZD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDZD7 MUTATED        0      1      5      1
  PDZD7 WILD-TYPE     19     52     25     23
D101V1, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             5              25
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDZD7 MUTATED        2      1      0      4
  PDZD7 WILD-TYPE     33     29     34     22
D101V2, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD7 MUTATED        1      1      1      1      2
  PDZD7 WILD-TYPE     28     17     12      8     11
D101V3, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD7 MUTATED        3      1      1      0      1
  PDZD7 WILD-TYPE     29     17     11     10      9
D101V4, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD7 MUTATED        1      0      0      2      4
  PDZD7 WILD-TYPE     25     20     28     23     16
D101V5, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             4              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD7 MUTATED        2      4      1
  PDZD7 WILD-TYPE     46     49     17
D101V6, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD7 MUTATED        0      6      0      1      0
  PDZD7 WILD-TYPE     37     25     17     20     13
D101V7, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             6              25
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD7 MUTATED        6      1      0
  PDZD7 WILD-TYPE     65     26     21
D101V8, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDZD7 MUTATED        0      1      1      2      0      2      1
  PDZD7 WILD-TYPE     18      7      9      6     36     23     11
D101V9, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDZD7 MUTATED        1      0      3      2      1      0
  PDZD7 WILD-TYPE     16     32     10     30     15      7
D101V10, multiclass
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             3              10
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = F8 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        3      5      2      2
  F8 WILD-TYPE     16     48     28     22
D102V1, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          3           16
  CLUS_2          5           48
  CLUS_3          2           28
  CLUS_4          2           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        7      1      2      2
  F8 WILD-TYPE     28     29     32     24
D102V2, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          7           28
  CLUS_2          1           29
  CLUS_3          2           32
  CLUS_4          2           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        4      1      0      2      1
  F8 WILD-TYPE     25     17     13      7     12
D102V3, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4           25
  CLUS_2          1           17
  CLUS_3          0           13
  CLUS_4          2            7
  CLUS_5          1           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        5      0      1      1      1
  F8 WILD-TYPE     27     18     11      9      9
D102V4, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          5           27
  CLUS_2          0           18
  CLUS_3          1           11
  CLUS_4          1            9
  CLUS_5          1            9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        3      1      4      3      1
  F8 WILD-TYPE     23     19     24     22     19
D102V5, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          3           23
  CLUS_2          1           19
  CLUS_3          4           24
  CLUS_4          3           22
  CLUS_5          1           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        6      6      0
  F8 WILD-TYPE     42     47     18
D102V6, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6           42
  CLUS_2          6           47
  CLUS_3          0           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        4      3      0      4      1
  F8 WILD-TYPE     33     28     17     17     12
D102V7, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4           33
  CLUS_2          3           28
  CLUS_3          0           17
  CLUS_4          4           17
  CLUS_5          1           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        8      2      2
  F8 WILD-TYPE     63     25     19
D102V8, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          8           63
  CLUS_2          2           25
  CLUS_3          2           19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  F8 MUTATED        2      2      2      0      4      2      0
  F8 WILD-TYPE     16      6      8      8     32     23     12
D102V9, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2           16
  CLUS_2          2            6
  CLUS_3          2            8
  CLUS_4          0            8
  CLUS_5          4           32
  CLUS_6          2           23
  CLUS_7          0           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  F8 MUTATED        1      5      0      4      2      0
  F8 WILD-TYPE     16     27     13     28     14      7
D102V10, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          1           16
  CLUS_2          5           27
  CLUS_3          0           13
  CLUS_4          4           28
  CLUS_5          2           14
  CLUS_6          0            7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(103) Variable = CACNA1D MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        3      6      3      4
  CACNA1D WILD-TYPE     16     47     27     20
D103V1, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               3                16
  CLUS_2               6                47
  CLUS_3               3                27
  CLUS_4               4                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        7      3      4      2
  CACNA1D WILD-TYPE     28     27     30     24
D103V2, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               7                28
  CLUS_2               3                27
  CLUS_3               4                30
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1D MUTATED        2      3      2      3      1
  CACNA1D WILD-TYPE     27     15     11      6     12
D103V3, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               2                27
  CLUS_2               3                15
  CLUS_3               2                11
  CLUS_4               3                 6
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1D MUTATED        3      3      1      2      2
  CACNA1D WILD-TYPE     29     15     11      8      8
D103V4, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               3                29
  CLUS_2               3                15
  CLUS_3               1                11
  CLUS_4               2                 8
  CLUS_5               2                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1D MUTATED        4      1      4      6      1
  CACNA1D WILD-TYPE     22     19     24     19     19
D103V5, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               4                22
  CLUS_2               1                19
  CLUS_3               4                24
  CLUS_4               6                19
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED        6      9      1
  CACNA1D WILD-TYPE     42     44     17
D103V6, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               6                42
  CLUS_2               9                44
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1D MUTATED        6      2      4      4      0
  CACNA1D WILD-TYPE     31     29     13     17     13
D103V7, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               6                31
  CLUS_2               2                29
  CLUS_3               4                13
  CLUS_4               4                17
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED       12      3      1
  CACNA1D WILD-TYPE     59     24     20
D103V8, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1              12                59
  CLUS_2               3                24
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CACNA1D MUTATED        3      2      1      0      8      2      0
  CACNA1D WILD-TYPE     15      6      9      8     28     23     12
D103V9, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               3                15
  CLUS_2               2                 6
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               8                28
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CACNA1D MUTATED        2      6      0      6      1      1
  CACNA1D WILD-TYPE     15     26     13     26     15      6
D103V10, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               2                15
  CLUS_2               6                26
  CLUS_3               0                13
  CLUS_4               6                26
  CLUS_5               1                15
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = IFNGR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNGR2 MUTATED        1      5      0      1
  IFNGR2 WILD-TYPE     18     48     30     23
D104V1, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              5               48
  CLUS_3              0               30
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNGR2 MUTATED        4      1      2      0
  IFNGR2 WILD-TYPE     31     29     32     26
D104V2, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNGR2 MUTATED        2      1      0      1      1
  IFNGR2 WILD-TYPE     27     17     13      8     12
D104V3, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNGR2 MUTATED        2      1      1      1      0
  IFNGR2 WILD-TYPE     30     17     11      9     10
D104V4, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNGR2 MUTATED        2      1      1      3      0
  IFNGR2 WILD-TYPE     24     19     27     22     20
D104V5, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        6      1      0
  IFNGR2 WILD-TYPE     42     52     18
D104V6, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              6               42
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNGR2 MUTATED        4      0      2      0      1
  IFNGR2 WILD-TYPE     33     31     15     21     12
D104V7, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              0               31
  CLUS_3              2               15
  CLUS_4              0               21
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        5      1      1
  IFNGR2 WILD-TYPE     66     26     20
D104V8, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFNGR2 MUTATED        0      0      0      0      4      3      0
  IFNGR2 WILD-TYPE     18      8     10      8     32     22     12
D104V9, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              4               32
  CLUS_6              3               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFNGR2 MUTATED        0      3      0      3      1      0
  IFNGR2 WILD-TYPE     17     29     13     29     15      7
D104V10, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(105) Variable = ALS2CR11 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALS2CR11 MUTATED        1      3      3      1
  ALS2CR11 WILD-TYPE     18     50     27     23
D105V1, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                3                 50
  CLUS_3                3                 27
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALS2CR11 MUTATED        1      2      3      2
  ALS2CR11 WILD-TYPE     34     28     31     24
D105V2, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                2                 28
  CLUS_3                3                 31
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALS2CR11 MUTATED        2      2      0      1      2
  ALS2CR11 WILD-TYPE     27     16     13      8     11
D105V3, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                2                 16
  CLUS_3                0                 13
  CLUS_4                1                  8
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALS2CR11 MUTATED        3      3      1      0      0
  ALS2CR11 WILD-TYPE     29     15     11     10     10
D105V4, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                3                 29
  CLUS_2                3                 15
  CLUS_3                1                 11
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALS2CR11 MUTATED        2      0      1      3      2
  ALS2CR11 WILD-TYPE     24     20     27     22     18
D105V5, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                3                 22
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ALS2CR11 MUTATED        4      4      0
  ALS2CR11 WILD-TYPE     44     49     18
D105V6, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                4                 49
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALS2CR11 MUTATED        2      2      3      1      0
  ALS2CR11 WILD-TYPE     35     29     14     20     13
D105V7, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                2                 29
  CLUS_3                3                 14
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ALS2CR11 MUTATED        6      2      0
  ALS2CR11 WILD-TYPE     65     25     21
D105V8, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                6                 65
  CLUS_2                2                 25
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALS2CR11 MUTATED        1      1      2      2      2      0      0
  ALS2CR11 WILD-TYPE     17      7      8      6     34     25     12
D105V9, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                  7
  CLUS_3                2                  8
  CLUS_4                2                  6
  CLUS_5                2                 34
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALS2CR11 MUTATED        2      1      2      3      0      0
  ALS2CR11 WILD-TYPE     15     31     11     29     16      7
D105V10, multiclass
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                1                 31
  CLUS_3                2                 11
  CLUS_4                3                 29
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = OSBPL1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        1      4      3      1
  OSBPL1A WILD-TYPE     18     49     27     23
D106V1, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               1                18
  CLUS_2               4                49
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        4      0      4      1
  OSBPL1A WILD-TYPE     31     30     30     25
D106V2, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               4                31
  CLUS_2               0                30
  CLUS_3               4                30
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL1A MUTATED        2      0      0      2      2
  OSBPL1A WILD-TYPE     27     18     13      7     11
D106V3, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               2                 7
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL1A MUTATED        4      1      0      1      0
  OSBPL1A WILD-TYPE     28     17     12      9     10
D106V4, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               4                28
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL1A MUTATED        5      1      1      1      1
  OSBPL1A WILD-TYPE     21     19     27     24     19
D106V5, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               5                21
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL1A MUTATED        3      5      1
  OSBPL1A WILD-TYPE     45     48     17
D106V6, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               3                45
  CLUS_2               5                48
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL1A MUTATED        4      2      0      3      0
  OSBPL1A WILD-TYPE     33     29     17     18     13
D106V7, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               4                33
  CLUS_2               2                29
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL1A MUTATED        8      1      0
  OSBPL1A WILD-TYPE     63     26     21
D106V8, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               8                63
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSBPL1A MUTATED        1      0      1      0      3      2      1
  OSBPL1A WILD-TYPE     17      8      9      8     33     23     11
D106V9, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               2                23
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBPL1A MUTATED        3      3      0      2      0      0
  OSBPL1A WILD-TYPE     14     29     13     30     16      7
D106V10, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               3                14
  CLUS_2               3                29
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = SLC24A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A1 MUTATED        1      3      1      1
  SLC24A1 WILD-TYPE     18     50     29     23
D107V1, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               3                50
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A1 MUTATED        2      0      1      3
  SLC24A1 WILD-TYPE     33     30     33     23
D107V2, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC24A1 MUTATED        3      0      0      0      0
  SLC24A1 WILD-TYPE     26     18     13      9     13
D107V3, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC24A1 MUTATED        2      0      0      1      0
  SLC24A1 WILD-TYPE     30     18     12      9     10
D107V4, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC24A1 MUTATED        2      1      1      0      2
  SLC24A1 WILD-TYPE     24     19     27     25     18
D107V5, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               0                25
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        0      4      2
  SLC24A1 WILD-TYPE     48     49     16
D107V6, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               0                48
  CLUS_2               4                49
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC24A1 MUTATED        2      2      0      1      1
  SLC24A1 WILD-TYPE     35     29     17     20     12
D107V7, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               2                29
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        4      0      2
  SLC24A1 WILD-TYPE     67     27     19
D107V8, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               0                27
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC24A1 MUTATED        0      0      0      1      3      2      0
  SLC24A1 WILD-TYPE     18      8     10      7     33     23     12
D107V9, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC24A1 MUTATED        0      2      2      0      2      0
  SLC24A1 WILD-TYPE     17     30     11     32     14      7
D107V10, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               2                11
  CLUS_4               0                32
  CLUS_5               2                14
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = PDZD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDZD2 MUTATED        1      5      5      2
  PDZD2 WILD-TYPE     18     48     25     22
D108V1, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             5              25
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDZD2 MUTATED        3      3      5      2
  PDZD2 WILD-TYPE     32     27     29     24
D108V2, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              27
  CLUS_3             5              29
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD2 MUTATED        4      4      2      2      0
  PDZD2 WILD-TYPE     25     14     11      7     13
D108V3, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             4              14
  CLUS_3             2              11
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD2 MUTATED        4      4      0      2      2
  PDZD2 WILD-TYPE     28     14     12      8      8
D108V4, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             4              14
  CLUS_3             0              12
  CLUS_4             2               8
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD2 MUTATED        5      2      1      4      1
  PDZD2 WILD-TYPE     21     18     27     21     19
D108V5, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             5              21
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             4              21
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        6      5      2
  PDZD2 WILD-TYPE     42     48     16
D108V6, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             5              48
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDZD2 MUTATED        4      1      3      3      2
  PDZD2 WILD-TYPE     33     30     14     18     11
D108V7, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             3              14
  CLUS_4             3              18
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        9      2      2
  PDZD2 WILD-TYPE     62     25     19
D108V8, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             9              62
  CLUS_2             2              25
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDZD2 MUTATED        1      0      2      0      5      4      0
  PDZD2 WILD-TYPE     17      8      8      8     31     21     12
D108V9, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             5              31
  CLUS_6             4              21
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDZD2 MUTATED        1      3      1      4      3      0
  PDZD2 WILD-TYPE     16     29     12     28     13      7
D108V10, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             4              28
  CLUS_5             3              13
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(109) Variable = CIR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        0      4      1      0
  CIR1 WILD-TYPE     19     49     29     24
D109V1, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            4             49
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        3      0      2      0
  CIR1 WILD-TYPE     32     30     32     26
D109V2, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIR1 MUTATED        0      1      0      1      2
  CIR1 WILD-TYPE     29     17     13      8     11
D109V3, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIR1 MUTATED        1      1      1      0      1
  CIR1 WILD-TYPE     31     17     11     10      9
D109V4, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIR1 MUTATED        1      0      2      2      0
  CIR1 WILD-TYPE     25     20     26     23     20
D109V5, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        3      2      0
  CIR1 WILD-TYPE     45     51     18
D109V6, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIR1 MUTATED        3      0      1      1      0
  CIR1 WILD-TYPE     34     31     16     20     13
D109V7, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        4      1      0
  CIR1 WILD-TYPE     67     26     21
D109V8, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIR1 MUTATED        1      0      1      0      2      1      0
  CIR1 WILD-TYPE     17      8      9      8     34     24     12
D109V9, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIR1 MUTATED        0      3      0      2      0      0
  CIR1 WILD-TYPE     17     29     13     30     16      7
D109V10, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = ZNF184 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF184 MUTATED        1      5      3      1
  ZNF184 WILD-TYPE     18     48     27     23
D110V1, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              5               48
  CLUS_3              3               27
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF184 MUTATED        3      3      4      0
  ZNF184 WILD-TYPE     32     27     30     26
D110V2, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              3               27
  CLUS_3              4               30
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF184 MUTATED        4      0      0      1      0
  ZNF184 WILD-TYPE     25     18     13      8     13
D110V3, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              4               25
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF184 MUTATED        4      0      0      1      0
  ZNF184 WILD-TYPE     28     18     12      9     10
D110V4, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF184 MUTATED        4      1      1      4      0
  ZNF184 WILD-TYPE     22     19     27     21     20
D110V5, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              4               21
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF184 MUTATED        5      4      1
  ZNF184 WILD-TYPE     43     49     17
D110V6, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              5               43
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF184 MUTATED        3      0      2      5      0
  ZNF184 WILD-TYPE     34     31     15     16     13
D110V7, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              0               31
  CLUS_3              2               15
  CLUS_4              5               16
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF184 MUTATED        6      3      1
  ZNF184 WILD-TYPE     65     24     20
D110V8, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              6               65
  CLUS_2              3               24
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF184 MUTATED        2      0      1      0      6      0      1
  ZNF184 WILD-TYPE     16      8      9      8     30     25     11
D110V9, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              6               30
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF184 MUTATED        1      2      2      4      0      1
  ZNF184 WILD-TYPE     16     30     11     28     16      6
D110V10, multiclass
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              2               11
  CLUS_4              4               28
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = RBM15B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        1      3      2      1
  RBM15B WILD-TYPE     18     50     28     23
D111V1, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        3      1      2      1
  RBM15B WILD-TYPE     32     29     32     25
D111V2, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM15B MUTATED        3      2      0      0      1
  RBM15B WILD-TYPE     26     16     13      9     12
D111V3, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              3               26
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM15B MUTATED        3      2      1      0      0
  RBM15B WILD-TYPE     29     16     11     10     10
D111V4, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              3               29
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM15B MUTATED        2      0      3      1      1
  RBM15B WILD-TYPE     24     20     25     24     19
D111V5, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              3               25
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RBM15B MUTATED        2      5      0
  RBM15B WILD-TYPE     46     48     18
D111V6, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              2               46
  CLUS_2              5               48
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM15B MUTATED        5      1      0      1      0
  RBM15B WILD-TYPE     32     30     17     20     13
D111V7, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              5               32
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RBM15B MUTATED        6      1      0
  RBM15B WILD-TYPE     65     26     21
D111V8, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              6               65
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM15B MUTATED        1      0      0      1      5      0      0
  RBM15B WILD-TYPE     17      8     10      7     31     25     12
D111V9, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              5               31
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM15B MUTATED        0      5      1      1      0      0
  RBM15B WILD-TYPE     17     27     12     31     16      7
D111V10, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              0               17
  CLUS_2              5               27
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(112) Variable = ATRX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        2      7      4      4
  ATRX WILD-TYPE     17     46     26     20
D112V1, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            2             17
  CLUS_2            7             46
  CLUS_3            4             26
  CLUS_4            4             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        5      6      5      1
  ATRX WILD-TYPE     30     24     29     25
D112V2, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            5             30
  CLUS_2            6             24
  CLUS_3            5             29
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRX MUTATED        3      3      0      1      2
  ATRX WILD-TYPE     26     15     13      8     11
D112V3, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            3             26
  CLUS_2            3             15
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRX MUTATED        4      3      1      0      1
  ATRX WILD-TYPE     28     15     11     10      9
D112V4, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            4             28
  CLUS_2            3             15
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRX MUTATED        3      2      3      6      3
  ATRX WILD-TYPE     23     18     25     19     17
D112V5, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            3             23
  CLUS_2            2             18
  CLUS_3            3             25
  CLUS_4            6             19
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED        6      9      2
  ATRX WILD-TYPE     42     44     16
D112V6, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            6             42
  CLUS_2            9             44
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRX MUTATED        6      4      3      4      0
  ATRX WILD-TYPE     31     27     14     17     13
D112V7, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            6             31
  CLUS_2            4             27
  CLUS_3            3             14
  CLUS_4            4             17
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED       11      4      2
  ATRX WILD-TYPE     60     23     19
D112V8, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           11             60
  CLUS_2            4             23
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATRX MUTATED        2      1      2      1      5      4      2
  ATRX WILD-TYPE     16      7      8      7     31     21     10
D112V9, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1              7
  CLUS_3            2              8
  CLUS_4            1              7
  CLUS_5            5             31
  CLUS_6            4             21
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATRX MUTATED        1      5      3      6      0      2
  ATRX WILD-TYPE     16     27     10     26     16      5
D112V10, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            1             16
  CLUS_2            5             27
  CLUS_3            3             10
  CLUS_4            6             26
  CLUS_5            0             16
  CLUS_6            2              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = SBNO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        2      4      2      3
  SBNO1 WILD-TYPE     17     49     28     21
D113V1, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             4              49
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        4      2      2      3
  SBNO1 WILD-TYPE     31     28     32     23
D113V2, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBNO1 MUTATED        2      2      2      1      0
  SBNO1 WILD-TYPE     27     16     11      8     13
D113V3, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBNO1 MUTATED        2      2      0      2      1
  SBNO1 WILD-TYPE     30     16     12      8      9
D113V4, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             2               8
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBNO1 MUTATED        3      0      2      3      3
  SBNO1 WILD-TYPE     23     20     26     22     17
D113V5, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED        4      7      0
  SBNO1 WILD-TYPE     44     46     18
D113V6, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             7              46
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBNO1 MUTATED        4      3      3      1      0
  SBNO1 WILD-TYPE     33     28     14     20     13
D113V7, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             3              28
  CLUS_3             3              14
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED        8      3      0
  SBNO1 WILD-TYPE     63     24     21
D113V8, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SBNO1 MUTATED        2      1      0      0      5      3      0
  SBNO1 WILD-TYPE     16      7     10      8     31     22     12
D113V9, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             5              31
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SBNO1 MUTATED        0      4      2      3      2      0
  SBNO1 WILD-TYPE     17     28     11     29     14      7
D113V10, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             4              28
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(114) Variable = APOBEC4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        2      4      0      0
  APOBEC4 WILD-TYPE     17     49     30     24
D114V1, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               4                49
  CLUS_3               0                30
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        2      0      4      0
  APOBEC4 WILD-TYPE     33     30     30     26
D114V2, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               4                30
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOBEC4 MUTATED        0      1      1      1      0
  APOBEC4 WILD-TYPE     29     17     12      8     13
D114V3, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOBEC4 MUTATED        0      1      1      1      0
  APOBEC4 WILD-TYPE     32     17     11      9     10
D114V4, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               0                32
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOBEC4 MUTATED        3      0      3      0      0
  APOBEC4 WILD-TYPE     23     20     25     25     20
D114V5, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               0                20
  CLUS_3               3                25
  CLUS_4               0                25
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOBEC4 MUTATED        2      4      0
  APOBEC4 WILD-TYPE     46     49     18
D114V6, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               4                49
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOBEC4 MUTATED        2      1      0      3      0
  APOBEC4 WILD-TYPE     35     30     17     18     13
D114V7, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOBEC4 MUTATED        5      1      0
  APOBEC4 WILD-TYPE     66     26     21
D114V8, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               5                66
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APOBEC4 MUTATED        1      1      1      0      3      0      0
  APOBEC4 WILD-TYPE     17      7      9      8     33     25     12
D114V9, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APOBEC4 MUTATED        2      2      1      1      0      0
  APOBEC4 WILD-TYPE     15     30     12     31     16      7
D114V10, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(115) Variable = ST6GALNAC5 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC5 MUTATED        1      4      4      3
  ST6GALNAC5 WILD-TYPE     18     49     26     21
D115V1, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  1                   18
  CLUS_2                  4                   49
  CLUS_3                  4                   26
  CLUS_4                  3                   21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC5 MUTATED        5      2      3      2
  ST6GALNAC5 WILD-TYPE     30     28     31     24
D115V2, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  5                   30
  CLUS_2                  2                   28
  CLUS_3                  3                   31
  CLUS_4                  2                   24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ST6GALNAC5 MUTATED        3      3      1      2      1
  ST6GALNAC5 WILD-TYPE     26     15     12      7     12
D115V3, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  3                   26
  CLUS_2                  3                   15
  CLUS_3                  1                   12
  CLUS_4                  2                    7
  CLUS_5                  1                   12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ST6GALNAC5 MUTATED        4      3      1      1      1
  ST6GALNAC5 WILD-TYPE     28     15     11      9      9
D115V4, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  4                   28
  CLUS_2                  3                   15
  CLUS_3                  1                   11
  CLUS_4                  1                    9
  CLUS_5                  1                    9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ST6GALNAC5 MUTATED        3      2      3      2      2
  ST6GALNAC5 WILD-TYPE     23     18     25     23     18
D115V5, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  3                   23
  CLUS_2                  2                   18
  CLUS_3                  3                   25
  CLUS_4                  2                   23
  CLUS_5                  2                   18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        5      6      1
  ST6GALNAC5 WILD-TYPE     43     47     17
D115V6, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  5                   43
  CLUS_2                  6                   47
  CLUS_3                  1                   17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ST6GALNAC5 MUTATED        3      3      2      2      2
  ST6GALNAC5 WILD-TYPE     34     28     15     19     11
D115V7, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  3                   34
  CLUS_2                  3                   28
  CLUS_3                  2                   15
  CLUS_4                  2                   19
  CLUS_5                  2                   11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        8      3      1
  ST6GALNAC5 WILD-TYPE     63     24     20
D115V8, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  8                   63
  CLUS_2                  3                   24
  CLUS_3                  1                   20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ST6GALNAC5 MUTATED        2      0      2      1      4      1      2
  ST6GALNAC5 WILD-TYPE     16      8      8      7     32     24     10
D115V9, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  2                   16
  CLUS_2                  0                    8
  CLUS_3                  2                    8
  CLUS_4                  1                    7
  CLUS_5                  4                   32
  CLUS_6                  1                   24
  CLUS_7                  2                   10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ST6GALNAC5 MUTATED        1      4      2      4      0      1
  ST6GALNAC5 WILD-TYPE     16     28     11     28     16      6
D115V10, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  1                   16
  CLUS_2                  4                   28
  CLUS_3                  2                   11
  CLUS_4                  4                   28
  CLUS_5                  0                   16
  CLUS_6                  1                    6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(116) Variable = OFD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OFD1 MUTATED        1      2      4      0
  OFD1 WILD-TYPE     18     51     26     24
D116V1, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            4             26
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OFD1 MUTATED        1      1      2      3
  OFD1 WILD-TYPE     34     29     32     23
D116V2, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            3             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OFD1 MUTATED        0      2      3      0      1
  OFD1 WILD-TYPE     29     16     10      9     12
D116V3, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            2             16
  CLUS_3            3             10
  CLUS_4            0              9
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OFD1 MUTATED        0      2      2      0      2
  OFD1 WILD-TYPE     32     16     10     10      8
D116V4, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            0             32
  CLUS_2            2             16
  CLUS_3            2             10
  CLUS_4            0             10
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OFD1 MUTATED        1      0      2      1      3
  OFD1 WILD-TYPE     25     20     26     24     17
D116V5, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OFD1 MUTATED        3      3      1
  OFD1 WILD-TYPE     45     50     17
D116V6, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OFD1 MUTATED        3      4      0      0      0
  OFD1 WILD-TYPE     34     27     17     21     13
D116V7, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            4             27
  CLUS_3            0             17
  CLUS_4            0             21
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OFD1 MUTATED        5      1      1
  OFD1 WILD-TYPE     66     26     20
D116V8, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OFD1 MUTATED        0      0      1      2      2      2      0
  OFD1 WILD-TYPE     18      8      9      6     34     23     12
D116V9, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            2              6
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OFD1 MUTATED        1      1      1      2      2      0
  OFD1 WILD-TYPE     16     31     12     30     14      7
D116V10, multiclass
        clus
vv       OFD1 MUTATED OFD1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(117) Variable = NAP1L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        2      4      1      1
  NAP1L2 WILD-TYPE     17     49     29     23
D117V1, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              4               49
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        2      0      5      1
  NAP1L2 WILD-TYPE     33     30     29     25
D117V2, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              5               29
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        1      2      2      1      0
  NAP1L2 WILD-TYPE     28     16     11      8     13
D117V3, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               16
  CLUS_3              2               11
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        2      2      2      0      0
  NAP1L2 WILD-TYPE     30     16     10     10     10
D117V4, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              2               16
  CLUS_3              2               10
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        1      0      6      1      0
  NAP1L2 WILD-TYPE     25     20     22     24     20
D117V5, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              6               22
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      6      0
  NAP1L2 WILD-TYPE     46     47     18
D117V6, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              6               47
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        3      3      0      2      0
  NAP1L2 WILD-TYPE     34     28     17     19     13
D117V7, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              3               28
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        8      0      0
  NAP1L2 WILD-TYPE     63     27     21
D117V8, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              8               63
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L2 MUTATED        0      2      2      0      3      1      0
  NAP1L2 WILD-TYPE     18      6      8      8     33     24     12
D117V9, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              2                6
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAP1L2 MUTATED        1      5      1      1      0      0
  NAP1L2 WILD-TYPE     16     27     12     31     16      7
D117V10, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              5               27
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = AFTPH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFTPH MUTATED        0      4      4      1
  AFTPH WILD-TYPE     19     49     26     23
D118V1, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             0              19
  CLUS_2             4              49
  CLUS_3             4              26
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFTPH MUTATED        3      3      1      2
  AFTPH WILD-TYPE     32     27     33     24
D118V2, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              27
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFTPH MUTATED        1      1      2      2      1
  AFTPH WILD-TYPE     28     17     11      7     12
D118V3, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFTPH MUTATED        2      2      1      1      1
  AFTPH WILD-TYPE     30     16     11      9      9
D118V4, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFTPH MUTATED        2      3      1      2      1
  AFTPH WILD-TYPE     24     17     27     23     19
D118V5, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              17
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AFTPH MUTATED        4      3      2
  AFTPH WILD-TYPE     44     50     16
D118V6, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             4              44
  CLUS_2             3              50
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFTPH MUTATED        1      3      0      3      2
  AFTPH WILD-TYPE     36     28     17     18     11
D118V7, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AFTPH MUTATED        5      2      2
  AFTPH WILD-TYPE     66     25     19
D118V8, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             5              66
  CLUS_2             2              25
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AFTPH MUTATED        1      1      1      2      1      2      1
  AFTPH WILD-TYPE     17      7      9      6     35     23     11
D118V9, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AFTPH MUTATED        1      2      1      3      1      1
  AFTPH WILD-TYPE     16     30     12     29     15      6
D118V10, multiclass
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(119) Variable = SYNCRIP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        0      1      3      1
  SYNCRIP WILD-TYPE     19     52     27     23
D119V1, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        2      2      1      0
  SYNCRIP WILD-TYPE     33     28     33     26
D119V2, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        1      1      0      1      0
  SYNCRIP WILD-TYPE     28     17     13      8     13
D119V3, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        2      1      0      0      0
  SYNCRIP WILD-TYPE     30     17     12     10     10
D119V4, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        0      0      2      3      0
  SYNCRIP WILD-TYPE     26     20     26     22     20
D119V5, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               2                26
  CLUS_4               3                22
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        3      1      1
  SYNCRIP WILD-TYPE     45     52     17
D119V6, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        0      2      1      2      0
  SYNCRIP WILD-TYPE     37     29     16     19     13
D119V7, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                37
  CLUS_2               2                29
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        2      2      1
  SYNCRIP WILD-TYPE     69     25     20
D119V8, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               2                69
  CLUS_2               2                25
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNCRIP MUTATED        0      0      1      1      2      1      0
  SYNCRIP WILD-TYPE     18      8      9      7     34     24     12
D119V9, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYNCRIP MUTATED        0      0      1      3      1      0
  SYNCRIP WILD-TYPE     17     32     12     29     15      7
D119V10, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               1                12
  CLUS_4               3                29
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(120) Variable = RNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        0      4      1      4
  RNF43 WILD-TYPE     19     49     29     20
D120V1, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             4              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        7      0      1      1
  RNF43 WILD-TYPE     28     30     33     25
D120V2, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             7              28
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        5      0      0      1      0
  RNF43 WILD-TYPE     24     18     13      8     13
D120V3, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5              24
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        5      0      0      1      0
  RNF43 WILD-TYPE     27     18     12      9     10
D120V4, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        3      0      2      2      2
  RNF43 WILD-TYPE     23     20     26     23     18
D120V5, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        2      7      0
  RNF43 WILD-TYPE     46     46     18
D120V6, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             7              46
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        5      2      0      2      0
  RNF43 WILD-TYPE     32     29     17     19     13
D120V7, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        9      0      0
  RNF43 WILD-TYPE     62     27     21
D120V8, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             9              62
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF43 MUTATED        0      1      1      0      5      2      0
  RNF43 WILD-TYPE     18      7      9      8     31     23     12
D120V9, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             5              31
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF43 MUTATED        1      3      3      2      0      0
  RNF43 WILD-TYPE     16     29     10     30     16      7
D120V10, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             3              10
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(121) Variable = PRRG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        2      0      2      2
  PRRG1 WILD-TYPE     17     53     28     22
D121V1, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        0      1      4      1
  PRRG1 WILD-TYPE     35     29     30     25
D121V2, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        2      2      2      0      0
  PRRG1 WILD-TYPE     27     16     11      9     13
D121V3, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             2              11
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        2      2      1      0      1
  PRRG1 WILD-TYPE     30     16     11     10      9
D121V4, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        0      1      3      1      1
  PRRG1 WILD-TYPE     26     19     25     24     19
D121V5, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        1      5      0
  PRRG1 WILD-TYPE     47     48     18
D121V6, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        3      2      1      0      0
  PRRG1 WILD-TYPE     34     29     16     21     13
D121V7, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        5      1      0
  PRRG1 WILD-TYPE     66     26     21
D121V8, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRRG1 MUTATED        1      1      0      0      2      2      0
  PRRG1 WILD-TYPE     17      7     10      8     34     23     12
D121V9, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRRG1 MUTATED        1      3      0      1      1      0
  PRRG1 WILD-TYPE     16     29     13     31     15      7
D121V10, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(122) Variable = HSD17B7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B7 MUTATED        1      2      4      1
  HSD17B7 WILD-TYPE     18     51     26     23
D122V1, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               4                26
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B7 MUTATED        2      3      3      0
  HSD17B7 WILD-TYPE     33     27     31     26
D122V2, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               3                27
  CLUS_3               3                31
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSD17B7 MUTATED        2      1      1      2      1
  HSD17B7 WILD-TYPE     27     17     12      7     12
D122V3, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               2                 7
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSD17B7 MUTATED        2      1      1      2      1
  HSD17B7 WILD-TYPE     30     17     11      8      9
D122V4, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               2                 8
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSD17B7 MUTATED        4      2      1      1      0
  HSD17B7 WILD-TYPE     22     18     27     24     20
D122V5, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               4                22
  CLUS_2               2                18
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSD17B7 MUTATED        2      3      3
  HSD17B7 WILD-TYPE     46     50     15
D122V6, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               3                50
  CLUS_3               3                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSD17B7 MUTATED        3      1      1      2      1
  HSD17B7 WILD-TYPE     34     30     16     19     12
D122V7, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSD17B7 MUTATED        4      1      3
  HSD17B7 WILD-TYPE     67     26     18
D122V8, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               3                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSD17B7 MUTATED        1      0      0      0      3      2      1
  HSD17B7 WILD-TYPE     17      8     10      8     33     23     11
D122V9, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               2                23
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSD17B7 MUTATED        1      2      0      1      2      1
  HSD17B7 WILD-TYPE     16     30     13     31     14      6
D122V10, multiclass
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               2                14
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(123) Variable = HTATSF1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTATSF1 MUTATED        1      2      3      3
  HTATSF1 WILD-TYPE     18     51     27     21
D123V1, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               3                27
  CLUS_4               3                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTATSF1 MUTATED        2      5      2      0
  HTATSF1 WILD-TYPE     33     25     32     26
D123V2, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               5                25
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTATSF1 MUTATED        2      0      0      2      0
  HTATSF1 WILD-TYPE     27     18     13      7     13
D123V3, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTATSF1 MUTATED        3      0      0      1      0
  HTATSF1 WILD-TYPE     29     18     12      9     10
D123V4, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTATSF1 MUTATED        0      2      3      4      0
  HTATSF1 WILD-TYPE     26     18     25     21     20
D123V5, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                18
  CLUS_3               3                25
  CLUS_4               4                21
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HTATSF1 MUTATED        5      2      2
  HTATSF1 WILD-TYPE     43     51     16
D123V6, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               5                43
  CLUS_2               2                51
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTATSF1 MUTATED        2      0      3      3      1
  HTATSF1 WILD-TYPE     35     31     14     18     12
D123V7, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                31
  CLUS_3               3                14
  CLUS_4               3                18
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HTATSF1 MUTATED        3      5      1
  HTATSF1 WILD-TYPE     68     22     20
D123V8, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               5                22
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTATSF1 MUTATED        3      0      1      0      3      0      2
  HTATSF1 WILD-TYPE     15      8      9      8     33     25     10
D123V9, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               3                15
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               0                25
  CLUS_7               2                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTATSF1 MUTATED        0      2      0      5      0      2
  HTATSF1 WILD-TYPE     17     30     13     27     16      5
D123V10, multiclass
        clus
vv       HTATSF1 MUTATED HTATSF1 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               5                27
  CLUS_5               0                16
  CLUS_6               2                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(124) Variable = PRDM8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM8 MUTATED        0      5      1      2
  PRDM8 WILD-TYPE     19     48     29     22
D124V1, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM8 MUTATED        2      2      3      1
  PRDM8 WILD-TYPE     33     28     31     25
D124V2, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRDM8 MUTATED        4      1      0      1      0
  PRDM8 WILD-TYPE     25     17     13      8     13
D124V3, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRDM8 MUTATED        5      0      0      0      1
  PRDM8 WILD-TYPE     27     18     12     10      9
D124V4, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRDM8 MUTATED        2      1      1      3      1
  PRDM8 WILD-TYPE     24     19     27     22     19
D124V5, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        5      3      0
  PRDM8 WILD-TYPE     43     50     18
D124V6, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRDM8 MUTATED        4      1      2      1      0
  PRDM8 WILD-TYPE     33     30     15     20     13
D124V7, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        5      2      1
  PRDM8 WILD-TYPE     66     25     20
D124V8, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRDM8 MUTATED        0      1      3      0      3      1      0
  PRDM8 WILD-TYPE     18      7      7      8     33     24     12
D124V9, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             3               7
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRDM8 MUTATED        1      3      0      3      1      0
  PRDM8 WILD-TYPE     16     29     13     29     15      7
D124V10, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(125) Variable = TIGD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD6 MUTATED        1      2      1      3
  TIGD6 WILD-TYPE     18     51     29     21
D125V1, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD6 MUTATED        3      1      2      1
  TIGD6 WILD-TYPE     32     29     32     25
D125V2, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD6 MUTATED        3      1      0      1      0
  TIGD6 WILD-TYPE     26     17     13      8     13
D125V3, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD6 MUTATED        4      1      0      0      0
  TIGD6 WILD-TYPE     28     17     12     10     10
D125V4, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD6 MUTATED        1      1      1      3      1
  TIGD6 WILD-TYPE     25     19     27     22     19
D125V5, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD6 MUTATED        3      4      0
  TIGD6 WILD-TYPE     45     49     18
D125V6, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD6 MUTATED        4      1      1      1      0
  TIGD6 WILD-TYPE     33     30     16     20     13
D125V7, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD6 MUTATED        6      1      0
  TIGD6 WILD-TYPE     65     26     21
D125V8, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TIGD6 MUTATED        0      0      1      1      4      1      0
  TIGD6 WILD-TYPE     18      8      9      7     32     24     12
D125V9, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIGD6 MUTATED        0      3      1      3      0      0
  TIGD6 WILD-TYPE     17     29     12     29     16      7
D125V10, multiclass
        clus
vv       TIGD6 MUTATED TIGD6 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(126) Variable = CLCC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCC1 MUTATED        1      1      1      3
  CLCC1 WILD-TYPE     18     52     29     21
D126V1, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCC1 MUTATED        0      2      0      4
  CLCC1 WILD-TYPE     35     28     34     22
D126V2, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             2              28
  CLUS_3             0              34
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCC1 MUTATED        0      1      0      0      0
  CLCC1 WILD-TYPE     29     17     13      9     13
D126V3, multiclass
[1] "Remove cluster labels:" "CLCC1 MUTATED"         
clus
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-8126      TCGA-IB-A5SO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-Z5-AAPL 
"CLCC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCC1 MUTATED        0      1      0      0      0
  CLCC1 WILD-TYPE     32     17     12     10     10
D126V4, multiclass
[1] "Remove cluster labels:" "CLCC1 MUTATED"         
clus
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-8126      TCGA-IB-A5SO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-Z5-AAPL 
"CLCC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCC1 MUTATED        0      0      0      2      4
  CLCC1 WILD-TYPE     26     20     28     23     16
D126V5, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             4              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCC1 MUTATED        2      3      1
  CLCC1 WILD-TYPE     46     50     17
D126V6, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCC1 MUTATED        0      3      2      0      1
  CLCC1 WILD-TYPE     37     28     15     21     12
D126V7, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCC1 MUTATED        3      2      1
  CLCC1 WILD-TYPE     68     25     20
D126V8, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLCC1 MUTATED        0      0      1      2      1      2      0
  CLCC1 WILD-TYPE     18      8      9      6     35     23     12
D126V9, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLCC1 MUTATED        0      1      2      2      1      0
  CLCC1 WILD-TYPE     17     31     11     30     15      7
D126V10, multiclass
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(127) Variable = MKL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL1 MUTATED        1      2      3      1
  MKL1 WILD-TYPE     18     51     27     23
D127V1, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            3             27
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL1 MUTATED        1      1      1      4
  MKL1 WILD-TYPE     34     29     33     22
D127V2, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            4             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        2      3      0      0      0
  MKL1 WILD-TYPE     27     15     13      9     13
D127V3, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            3             15
  CLUS_3            0             13
  CLUS_4            0              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        2      3      0      0      0
  MKL1 WILD-TYPE     30     15     12     10     10
D127V4, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            3             15
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        0      1      1      1      3
  MKL1 WILD-TYPE     26     19     27     24     17
D127V5, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL1 MUTATED        2      3      1
  MKL1 WILD-TYPE     46     50     17
D127V6, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        0      4      1      0      1
  MKL1 WILD-TYPE     37     27     16     21     12
D127V7, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            4             27
  CLUS_3            1             16
  CLUS_4            0             21
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL1 MUTATED        2      2      2
  MKL1 WILD-TYPE     69     25     19
D127V8, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MKL1 MUTATED        1      0      0      1      0      4      0
  MKL1 WILD-TYPE     17      8     10      7     36     21     12
D127V9, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            0             36
  CLUS_6            4             21
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MKL1 MUTATED        0      1      1      1      3      0
  MKL1 WILD-TYPE     17     31     12     31     13      7
D127V10, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            3             13
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(128) Variable = SFRS2IP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED        0      3      3      5
  SFRS2IP WILD-TYPE     19     50     27     19
D128V1, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               3                27
  CLUS_4               5                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED        5      3      2      1
  SFRS2IP WILD-TYPE     30     27     32     25
D128V2, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               5                30
  CLUS_2               3                27
  CLUS_3               2                32
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2IP MUTATED        5      1      0      1      0
  SFRS2IP WILD-TYPE     24     17     13      8     13
D128V3, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               5                24
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2IP MUTATED        7      0      0      0      0
  SFRS2IP WILD-TYPE     25     18     12     10     10
D128V4, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               7                25
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2IP MUTATED        3      3      1      3      0
  SFRS2IP WILD-TYPE     23     17     27     22     20
D128V5, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               3                23
  CLUS_2               3                17
  CLUS_3               1                27
  CLUS_4               3                22
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SFRS2IP MUTATED        4      4      2
  SFRS2IP WILD-TYPE     44     49     16
D128V6, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               4                44
  CLUS_2               4                49
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2IP MUTATED        4      0      3      1      2
  SFRS2IP WILD-TYPE     33     31     14     20     11
D128V7, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               4                33
  CLUS_2               0                31
  CLUS_3               3                14
  CLUS_4               1                20
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SFRS2IP MUTATED        6      3      1
  SFRS2IP WILD-TYPE     65     24     20
D128V8, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               6                65
  CLUS_2               3                24
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFRS2IP MUTATED        1      1      1      0      4      2      1
  SFRS2IP WILD-TYPE     17      7      9      8     32     23     11
D128V9, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               4                32
  CLUS_6               2                23
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SFRS2IP MUTATED        1      4      0      3      1      1
  SFRS2IP WILD-TYPE     16     28     13     29     15      6
D128V10, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                16
  CLUS_2               4                28
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               1                15
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(129) Variable = PAK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED        3      2      3      4
  PAK3 WILD-TYPE     16     51     27     20
D129V1, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            3             16
  CLUS_2            2             51
  CLUS_3            3             27
  CLUS_4            4             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED        5      3      2      2
  PAK3 WILD-TYPE     30     27     32     24
D129V2, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            5             30
  CLUS_2            3             27
  CLUS_3            2             32
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK3 MUTATED        5      0      1      1      1
  PAK3 WILD-TYPE     24     18     12      8     12
D129V3, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            5             24
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK3 MUTATED        5      1      1      1      0
  PAK3 WILD-TYPE     27     17     11      9     10
D129V4, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            5             27
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK3 MUTATED        2      3      2      2      3
  PAK3 WILD-TYPE     24     17     26     23     17
D129V5, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            3             17
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK3 MUTATED        3      5      4
  PAK3 WILD-TYPE     45     48     14
D129V6, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            5             48
  CLUS_3            4             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAK3 MUTATED        5      3      1      2      1
  PAK3 WILD-TYPE     32     28     16     19     12
D129V7, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            5             32
  CLUS_2            3             28
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK3 MUTATED        7      1      4
  PAK3 WILD-TYPE     64     26     17
D129V8, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            7             64
  CLUS_2            1             26
  CLUS_3            4             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAK3 MUTATED        0      0      0      2      5      2      3
  PAK3 WILD-TYPE     18      8     10      6     31     23      9
D129V9, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            2              6
  CLUS_5            5             31
  CLUS_6            2             23
  CLUS_7            3              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAK3 MUTATED        1      3      2      2      2      2
  PAK3 WILD-TYPE     16     29     11     30     14      5
D129V10, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            3             29
  CLUS_3            2             11
  CLUS_4            2             30
  CLUS_5            2             14
  CLUS_6            2              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(130) Variable = RTKN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTKN2 MUTATED        1      3      1      3
  RTKN2 WILD-TYPE     18     50     29     21
D130V1, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTKN2 MUTATED        1      2      2      3
  RTKN2 WILD-TYPE     34     28     32     23
D130V2, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        2      1      1      0      2
  RTKN2 WILD-TYPE     27     17     12      9     11
D130V3, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        4      1      1      0      0
  RTKN2 WILD-TYPE     28     17     11     10     10
D130V4, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        0      1      4      2      1
  RTKN2 WILD-TYPE     26     19     24     23     19
D130V5, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             4              24
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RTKN2 MUTATED        3      3      2
  RTKN2 WILD-TYPE     45     50     16
D130V6, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        2      3      2      0      1
  RTKN2 WILD-TYPE     35     28     15     21     12
D130V7, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RTKN2 MUTATED        5      2      1
  RTKN2 WILD-TYPE     66     25     20
D130V8, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RTKN2 MUTATED        0      0      1      0      3      3      1
  RTKN2 WILD-TYPE     18      8      9      8     33     22     11
D130V9, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             3              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RTKN2 MUTATED        1      4      0      2      1      0
  RTKN2 WILD-TYPE     16     28     13     30     15      7
D130V10, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             4              28
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(131) Variable = TEX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED        2      3      3      1
  TEX2 WILD-TYPE     17     50     27     23
D131V1, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            3             50
  CLUS_3            3             27
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED        4      2      2      1
  TEX2 WILD-TYPE     31     28     32     25
D131V2, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            2             28
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX2 MUTATED        1      4      1      1      0
  TEX2 WILD-TYPE     28     14     12      8     13
D131V3, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            4             14
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX2 MUTATED        2      4      1      0      0
  TEX2 WILD-TYPE     30     14     11     10     10
D131V4, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            4             14
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX2 MUTATED        3      1      1      3      1
  TEX2 WILD-TYPE     23     19     27     22     19
D131V5, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            3             22
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEX2 MUTATED        4      3      2
  TEX2 WILD-TYPE     44     50     16
D131V6, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            3             50
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX2 MUTATED        4      1      1      1      2
  TEX2 WILD-TYPE     33     30     16     20     11
D131V7, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEX2 MUTATED        5      2      2
  TEX2 WILD-TYPE     66     25     19
D131V8, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TEX2 MUTATED        0      0      1      2      3      1      2
  TEX2 WILD-TYPE     18      8      9      6     33     24     10
D131V9, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            2              6
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TEX2 MUTATED        1      3      0      3      2      0
  TEX2 WILD-TYPE     16     29     13     29     14      7
D131V10, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            3             29
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(132) Variable = TMEM41A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41A MUTATED        0      3      1      2
  TMEM41A WILD-TYPE     19     50     29     22
D132V1, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               1                29
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41A MUTATED        2      1      3      0
  TMEM41A WILD-TYPE     33     29     31     26
D132V2, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               3                31
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        1      0      0      1      0
  TMEM41A WILD-TYPE     28     18     13      8     13
D132V3, multiclass
[1] "Remove cluster labels:" "TMEM41A MUTATED"       
clus
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        2      0      0      0      0
  TMEM41A WILD-TYPE     30     18     12     10     10
D132V4, multiclass
[1] "Remove cluster labels:" "TMEM41A MUTATED"       
clus
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        1      2      2      1      0
  TMEM41A WILD-TYPE     25     18     26     24     20
D132V5, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                18
  CLUS_3               2                26
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41A MUTATED        2      3      1
  TMEM41A WILD-TYPE     46     50     17
D132V6, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               2                46
  CLUS_2               3                50
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        4      0      0      2      0
  TMEM41A WILD-TYPE     33     31     17     19     13
D132V7, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               4                33
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41A MUTATED        4      1      1
  TMEM41A WILD-TYPE     67     26     20
D132V8, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM41A MUTATED        1      1      1      0      1      1      1
  TMEM41A WILD-TYPE     17      7      9      8     35     24     11
D132V9, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41A MUTATED        0      3      0      2      0      1
  TMEM41A WILD-TYPE     17     29     13     30     16      6
D132V10, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0                17
  CLUS_2               3                29
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(133) Variable = DHX57 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX57 MUTATED        0      6      3      2
  DHX57 WILD-TYPE     19     47     27     22
D133V1, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             6              47
  CLUS_3             3              27
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX57 MUTATED        7      0      2      2
  DHX57 WILD-TYPE     28     30     32     24
D133V2, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             7              28
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX57 MUTATED        4      2      0      3      0
  DHX57 WILD-TYPE     25     16     13      6     13
D133V3, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             3               6
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX57 MUTATED        5      2      0      2      0
  DHX57 WILD-TYPE     27     16     12      8     10
D133V4, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             2               8
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX57 MUTATED        4      2      1      3      1
  DHX57 WILD-TYPE     22     18     27     22     19
D133V5, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX57 MUTATED        5      5      1
  DHX57 WILD-TYPE     43     48     17
D133V6, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             5              48
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX57 MUTATED        5      1      1      2      2
  DHX57 WILD-TYPE     32     30     16     19     11
D133V7, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX57 MUTATED        8      1      2
  DHX57 WILD-TYPE     63     26     19
D133V8, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             1              26
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHX57 MUTATED        0      0      1      1      5      3      0
  DHX57 WILD-TYPE     18      8      9      7     31     22     12
D133V9, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             5              31
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHX57 MUTATED        2      2      1      3      2      0
  DHX57 WILD-TYPE     15     30     12     29     14      7
D133V10, multiclass
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(134) Variable = UHRF1BP1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1 MUTATED        1      1      4      1
  UHRF1BP1 WILD-TYPE     18     52     26     23
D134V1, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                1                 52
  CLUS_3                4                 26
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1 MUTATED        1      3      1      2
  UHRF1BP1 WILD-TYPE     34     27     33     24
D134V2, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                3                 27
  CLUS_3                1                 33
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        0      1      0      1      1
  UHRF1BP1 WILD-TYPE     29     17     13      8     12
D134V3, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                0                 29
  CLUS_2                1                 17
  CLUS_3                0                 13
  CLUS_4                1                  8
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        1      1      1      0      0
  UHRF1BP1 WILD-TYPE     31     17     11     10     10
D134V4, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                1                 17
  CLUS_3                1                 11
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        1      1      0      3      2
  UHRF1BP1 WILD-TYPE     25     19     28     22     18
D134V5, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                0                 28
  CLUS_4                3                 22
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1 MUTATED        3      2      2
  UHRF1BP1 WILD-TYPE     45     51     16
D134V6, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                2                 51
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        1      1      2      2      1
  UHRF1BP1 WILD-TYPE     36     30     15     19     12
D134V7, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                1                 30
  CLUS_3                2                 15
  CLUS_4                2                 19
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1 MUTATED        3      2      2
  UHRF1BP1 WILD-TYPE     68     25     19
D134V8, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                2                 25
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UHRF1BP1 MUTATED        2      0      1      2      1      0      1
  UHRF1BP1 WILD-TYPE     16      8      9      6     35     25     11
D134V9, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                2                  6
  CLUS_5                1                 35
  CLUS_6                0                 25
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UHRF1BP1 MUTATED        0      1      1      3      1      1
  UHRF1BP1 WILD-TYPE     17     31     12     29     15      6
D134V10, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                1                 31
  CLUS_3                1                 12
  CLUS_4                3                 29
  CLUS_5                1                 15
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(135) Variable = NEDD4L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD4L MUTATED        2      3      3      2
  NEDD4L WILD-TYPE     17     50     27     22
D135V1, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              2               17
  CLUS_2              3               50
  CLUS_3              3               27
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD4L MUTATED        2      2      6      0
  NEDD4L WILD-TYPE     33     28     28     26
D135V2, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              6               28
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEDD4L MUTATED        1      1      3      2      0
  NEDD4L WILD-TYPE     28     17     10      7     13
D135V3, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              3               10
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEDD4L MUTATED        3      1      2      0      1
  NEDD4L WILD-TYPE     29     17     10     10      9
D135V4, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              2               10
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEDD4L MUTATED        0      3      6      1      0
  NEDD4L WILD-TYPE     26     17     22     24     20
D135V5, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               17
  CLUS_3              6               22
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        2      6      2
  NEDD4L WILD-TYPE     46     47     16
D135V6, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              2               46
  CLUS_2              6               47
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEDD4L MUTATED        2      3      0      2      3
  NEDD4L WILD-TYPE     35     28     17     19     10
D135V7, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              2               35
  CLUS_2              3               28
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              3               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        7      1      2
  NEDD4L WILD-TYPE     64     26     19
D135V8, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              7               64
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEDD4L MUTATED        1      2      1      0      3      2      1
  NEDD4L WILD-TYPE     17      6      9      8     33     23     11
D135V9, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              1               17
  CLUS_2              2                6
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEDD4L MUTATED        1      4      1      2      2      0
  NEDD4L WILD-TYPE     16     28     12     30     14      7
D135V10, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              1               16
  CLUS_2              4               28
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(136) Variable = SMCR7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMCR7 MUTATED        0      7      0      0
  SMCR7 WILD-TYPE     19     46     30     24
D136V1, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             7              46
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMCR7 MUTATED        2      2      2      1
  SMCR7 WILD-TYPE     33     28     32     25
D136V2, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCR7 MUTATED        1      1      0      1      1
  SMCR7 WILD-TYPE     28     17     13      8     12
D136V3, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCR7 MUTATED        1      1      1      1      0
  SMCR7 WILD-TYPE     31     17     11      9     10
D136V4, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCR7 MUTATED        3      1      2      1      0
  SMCR7 WILD-TYPE     23     19     26     24     20
D136V5, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMCR7 MUTATED        2      4      1
  SMCR7 WILD-TYPE     46     49     17
D136V6, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCR7 MUTATED        2      2      1      2      0
  SMCR7 WILD-TYPE     35     29     16     19     13
D136V7, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMCR7 MUTATED        4      2      1
  SMCR7 WILD-TYPE     67     25     20
D136V8, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMCR7 MUTATED        2      2      1      0      1      0      1
  SMCR7 WILD-TYPE     16      6      9      8     35     25     11
D136V9, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMCR7 MUTATED        0      3      1      2      0      1
  SMCR7 WILD-TYPE     17     29     12     30     16      6
D136V10, multiclass
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(137) Variable = PUM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUM2 MUTATED        0      3      3      1
  PUM2 WILD-TYPE     19     50     27     23
D137V1, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            3             27
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUM2 MUTATED        3      2      1      1
  PUM2 WILD-TYPE     32     28     33     25
D137V2, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUM2 MUTATED        2      0      0      1      0
  PUM2 WILD-TYPE     27     18     13      8     13
D137V3, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUM2 MUTATED        3      0      0      0      0
  PUM2 WILD-TYPE     29     18     12     10     10
D137V4, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUM2 MUTATED        2      2      0      2      1
  PUM2 WILD-TYPE     24     18     28     23     19
D137V5, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        4      1      2
  PUM2 WILD-TYPE     44     52     16
D137V6, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            1             52
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUM2 MUTATED        1      0      1      2      3
  PUM2 WILD-TYPE     36     31     16     19     10
D137V7, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            3             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        3      2      2
  PUM2 WILD-TYPE     68     25     19
D137V8, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PUM2 MUTATED        0      0      1      1      2      1      1
  PUM2 WILD-TYPE     18      8      9      7     34     24     11
D137V9, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PUM2 MUTATED        1      0      0      2      2      1
  PUM2 WILD-TYPE     16     32     13     30     14      6
D137V10, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            2             14
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(138) Variable = IL1R2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1R2 MUTATED        0      4      1      1
  IL1R2 WILD-TYPE     19     49     29     23
D138V1, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1R2 MUTATED        4      0      2      0
  IL1R2 WILD-TYPE     31     30     32     26
D138V2, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1R2 MUTATED        2      1      0      2      0
  IL1R2 WILD-TYPE     27     17     13      7     13
D138V3, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1R2 MUTATED        3      1      0      1      0
  IL1R2 WILD-TYPE     29     17     12      9     10
D138V4, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1R2 MUTATED        2      1      2      1      0
  IL1R2 WILD-TYPE     24     19     26     24     20
D138V5, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1R2 MUTATED        3      3      0
  IL1R2 WILD-TYPE     45     50     18
D138V6, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1R2 MUTATED        2      0      0      2      2
  IL1R2 WILD-TYPE     35     31     17     19     11
D138V7, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1R2 MUTATED        3      1      2
  IL1R2 WILD-TYPE     68     26     19
D138V8, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL1R2 MUTATED        1      0      1      0      2      1      1
  IL1R2 WILD-TYPE     17      8      9      8     34     24     11
D138V9, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL1R2 MUTATED        1      1      0      3      1      0
  IL1R2 WILD-TYPE     16     31     13     29     15      7
D138V10, multiclass
        clus
vv       IL1R2 MUTATED IL1R2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(139) Variable = SLC22A9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        0      3      4      1
  SLC22A9 WILD-TYPE     19     50     26     23
D139V1, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               4                26
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        2      2      1      3
  SLC22A9 WILD-TYPE     33     28     33     23
D139V2, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               1                33
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A9 MUTATED        2      1      2      0      1
  SLC22A9 WILD-TYPE     27     17     11      9     12
D139V3, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               2                11
  CLUS_4               0                 9
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A9 MUTATED        2      1      2      0      1
  SLC22A9 WILD-TYPE     30     17     10     10      9
D139V4, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               2                10
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A9 MUTATED        1      2      1      1      3
  SLC22A9 WILD-TYPE     25     18     27     24     17
D139V5, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                18
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               3                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A9 MUTATED        3      2      3
  SLC22A9 WILD-TYPE     45     51     15
D139V6, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               2                51
  CLUS_3               3                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A9 MUTATED        2      3      1      1      1
  SLC22A9 WILD-TYPE     35     28     16     20     12
D139V7, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               3                28
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A9 MUTATED        4      1      3
  SLC22A9 WILD-TYPE     67     26     18
D139V8, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               3                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC22A9 MUTATED        1      0      0      1      2      2      2
  SLC22A9 WILD-TYPE     17      8     10      7     34     23     10
D139V9, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               2                23
  CLUS_7               2                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC22A9 MUTATED        1      1      1      1      3      1
  SLC22A9 WILD-TYPE     16     31     12     31     13      6
D139V10, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               3                13
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(140) Variable = MAGEA10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA10 MUTATED        0      4      1      1
  MAGEA10 WILD-TYPE     19     49     29     23
D140V1, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               4                49
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA10 MUTATED        2      1      2      1
  MAGEA10 WILD-TYPE     33     29     32     25
D140V2, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               2                32
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEA10 MUTATED        0      3      0      0      1
  MAGEA10 WILD-TYPE     29     15     13      9     12
D140V3, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               3                15
  CLUS_3               0                13
  CLUS_4               0                 9
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEA10 MUTATED        0      3      1      0      0
  MAGEA10 WILD-TYPE     32     15     11     10     10
D140V4, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                32
  CLUS_2               3                15
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEA10 MUTATED        3      0      0      2      1
  MAGEA10 WILD-TYPE     23     20     28     23     19
D140V5, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        3      3      0
  MAGEA10 WILD-TYPE     45     50     18
D140V6, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEA10 MUTATED        3      1      2      0      0
  MAGEA10 WILD-TYPE     34     30     15     21     13
D140V7, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               1                30
  CLUS_3               2                15
  CLUS_4               0                21
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        4      2      0
  MAGEA10 WILD-TYPE     67     25     21
D140V8, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               2                25
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGEA10 MUTATED        2      0      0      0      1      3      0
  MAGEA10 WILD-TYPE     16      8     10      8     35     22     12
D140V9, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               3                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAGEA10 MUTATED        0      4      0      2      0      0
  MAGEA10 WILD-TYPE     17     28     13     30     16      7
D140V10, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               4                28
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(141) Variable = PTPLAD2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPLAD2 MUTATED        0      3      2      1
  PTPLAD2 WILD-TYPE     19     50     28     23
D141V1, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPLAD2 MUTATED        2      1      1      2
  PTPLAD2 WILD-TYPE     33     29     33     24
D141V2, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPLAD2 MUTATED        0      0      1      1      0
  PTPLAD2 WILD-TYPE     29     18     12      8     13
D141V3, multiclass
[1] "Remove cluster labels:" "PTPLAD2 MUTATED"       
clus
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUS        TCGA-IB-AAUU 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPLAD2 MUTATED        1      0      0      0      1
  PTPLAD2 WILD-TYPE     31     18     12     10      9
D141V4, multiclass
[1] "Remove cluster labels:" "PTPLAD2 MUTATED"       
clus
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUS        TCGA-IB-AAUU 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPLAD2 MUTATED        2      0      0      2      2
  PTPLAD2 WILD-TYPE     24     20     28     23     18
D141V5, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PTPLAD2 MUTATED        2      4      0
  PTPLAD2 WILD-TYPE     46     49     18
D141V6, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               4                49
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPLAD2 MUTATED        2      2      1      1      0
  PTPLAD2 WILD-TYPE     35     29     16     20     13
D141V7, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               2                29
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PTPLAD2 MUTATED        5      1      0
  PTPLAD2 WILD-TYPE     66     26     21
D141V8, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               5                66
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPLAD2 MUTATED        0      0      1      0      3      2      0
  PTPLAD2 WILD-TYPE     18      8      9      8     33     23     12
D141V9, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPLAD2 MUTATED        1      1      1      2      1      0
  PTPLAD2 WILD-TYPE     16     31     12     30     15      7
D141V10, multiclass
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(142) Variable = HERC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED        1      0      2      3
  HERC5 WILD-TYPE     18     53     28     21
D142V1, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED        1      1      0      4
  HERC5 WILD-TYPE     34     29     34     22
D142V2, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HERC5 MUTATED        1      0      1      1      0
  HERC5 WILD-TYPE     28     18     12      8     13
D142V3, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HERC5 MUTATED        3      0      0      0      0
  HERC5 WILD-TYPE     29     18     12     10     10
D142V4, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HERC5 MUTATED        0      2      1      2      1
  HERC5 WILD-TYPE     26     18     27     23     19
D142V5, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC5 MUTATED        2      2      2
  HERC5 WILD-TYPE     46     51     16
D142V6, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HERC5 MUTATED        0      1      1      2      2
  HERC5 WILD-TYPE     37     30     16     19     11
D142V7, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC5 MUTATED        3      1      2
  HERC5 WILD-TYPE     68     26     19
D142V8, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HERC5 MUTATED        1      1      1      0      0      1      2
  HERC5 WILD-TYPE     17      7      9      8     36     24     10
D142V9, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HERC5 MUTATED        2      0      1      2      1      0
  HERC5 WILD-TYPE     15     32     12     30     15      7
D142V10, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(143) Variable = WDR67 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR67 MUTATED        1      3      1      0
  WDR67 WILD-TYPE     18     50     29     24
D143V1, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR67 MUTATED        3      0      2      0
  WDR67 WILD-TYPE     32     30     32     26
D143V2, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR67 MUTATED        0      0      2      2      0
  WDR67 WILD-TYPE     29     18     11      7     13
D143V3, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR67 MUTATED        1      0      1      1      1
  WDR67 WILD-TYPE     31     18     11      9      9
D143V4, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR67 MUTATED        0      0      2      2      1
  WDR67 WILD-TYPE     26     20     26     23     19
D143V5, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR67 MUTATED        3      2      0
  WDR67 WILD-TYPE     45     51     18
D143V6, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR67 MUTATED        1      2      1      1      0
  WDR67 WILD-TYPE     36     29     16     20     13
D143V7, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR67 MUTATED        5      0      0
  WDR67 WILD-TYPE     66     27     21
D143V8, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR67 MUTATED        0      0      1      1      2      1      0
  WDR67 WILD-TYPE     18      8      9      7     34     24     12
D143V9, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR67 MUTATED        0      2      1      2      0      0
  WDR67 WILD-TYPE     17     30     12     30     16      7
D143V10, multiclass
        clus
vv       WDR67 MUTATED WDR67 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(144) Variable = TMEM40 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM40 MUTATED        2      3      1      0
  TMEM40 WILD-TYPE     17     50     29     24
D144V1, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM40 MUTATED        3      1      1      1
  TMEM40 WILD-TYPE     32     29     33     25
D144V2, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM40 MUTATED        0      1      1      1      0
  TMEM40 WILD-TYPE     29     17     12      8     13
D144V3, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM40 MUTATED        0      1      0      1      1
  TMEM40 WILD-TYPE     32     17     12      9      9
D144V4, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              0               32
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM40 MUTATED        1      1      1      1      2
  TMEM40 WILD-TYPE     25     19     27     24     18
D144V5, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        2      3      1
  TMEM40 WILD-TYPE     46     50     17
D144V6, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM40 MUTATED        2      2      1      0      1
  TMEM40 WILD-TYPE     35     29     16     21     12
D144V7, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        5      0      1
  TMEM40 WILD-TYPE     66     27     20
D144V8, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM40 MUTATED        0      0      0      2      2      2      0
  TMEM40 WILD-TYPE     18      8     10      6     34     23     12
D144V9, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              2                6
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM40 MUTATED        0      2      2      1      1      0
  TMEM40 WILD-TYPE     17     30     11     31     15      7
D144V10, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              2               11
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(145) Variable = UNC5A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC5A MUTATED        0      3      2      3
  UNC5A WILD-TYPE     19     50     28     21
D145V1, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC5A MUTATED        4      1      2      1
  UNC5A WILD-TYPE     31     29     32     25
D145V2, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5A MUTATED        1      2      0      2      1
  UNC5A WILD-TYPE     28     16     13      7     12
D145V3, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5A MUTATED        2      2      0      1      1
  UNC5A WILD-TYPE     30     16     12      9      9
D145V4, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5A MUTATED        1      2      2      2      0
  UNC5A WILD-TYPE     25     18     26     23     20
D145V5, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              18
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC5A MUTATED        4      1      2
  UNC5A WILD-TYPE     44     52     16
D145V6, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             4              44
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5A MUTATED        2      0      2      1      2
  UNC5A WILD-TYPE     35     31     15     20     11
D145V7, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC5A MUTATED        4      2      1
  UNC5A WILD-TYPE     67     25     20
D145V8, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UNC5A MUTATED        1      0      1      0      2      2      1
  UNC5A WILD-TYPE     17      8      9      8     34     23     11
D145V9, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UNC5A MUTATED        0      2      0      3      1      1
  UNC5A WILD-TYPE     17     30     13     29     15      6
D145V10, multiclass
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(146) Variable = AARS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AARS2 MUTATED        0      3      2      2
  AARS2 WILD-TYPE     19     50     28     22
D146V1, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AARS2 MUTATED        3      1      2      1
  AARS2 WILD-TYPE     32     29     32     25
D146V2, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AARS2 MUTATED        3      2      0      1      0
  AARS2 WILD-TYPE     26     16     13      8     13
D146V3, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AARS2 MUTATED        3      2      0      1      0
  AARS2 WILD-TYPE     29     16     12      9     10
D146V4, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AARS2 MUTATED        2      0      0      4      1
  AARS2 WILD-TYPE     24     20     28     21     19
D146V5, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             4              21
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AARS2 MUTATED        5      1      1
  AARS2 WILD-TYPE     43     52     17
D146V6, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AARS2 MUTATED        2      1      0      3      1
  AARS2 WILD-TYPE     35     30     17     18     12
D146V7, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AARS2 MUTATED        5      1      1
  AARS2 WILD-TYPE     66     26     20
D146V8, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AARS2 MUTATED        1      0      1      2      2      1      0
  AARS2 WILD-TYPE     17      8      9      6     34     24     12
D146V9, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AARS2 MUTATED        0      1      1      4      1      0
  AARS2 WILD-TYPE     17     31     12     28     15      7
D146V10, multiclass
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             4              28
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(147) Variable = PDILT MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDILT MUTATED        1      5      1      2
  PDILT WILD-TYPE     18     48     29     22
D147V1, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDILT MUTATED        2      2      4      1
  PDILT WILD-TYPE     33     28     30     25
D147V2, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDILT MUTATED        2      2      0      2      1
  PDILT WILD-TYPE     27     16     13      7     12
D147V3, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDILT MUTATED        4      2      1      0      0
  PDILT WILD-TYPE     28     16     11     10     10
D147V4, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             4              28
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDILT MUTATED        2      2      3      2      0
  PDILT WILD-TYPE     24     18     25     23     20
D147V5, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             3              25
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDILT MUTATED        4      5      0
  PDILT WILD-TYPE     44     48     18
D147V6, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             4              44
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDILT MUTATED        4      1      1      1      2
  PDILT WILD-TYPE     33     30     16     20     11
D147V7, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDILT MUTATED        5      3      1
  PDILT WILD-TYPE     66     24     20
D147V8, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             5              66
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDILT MUTATED        3      0      2      0      3      1      0
  PDILT WILD-TYPE     15      8      8      8     33     24     12
D147V9, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             3              15
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDILT MUTATED        0      4      0      4      1      0
  PDILT WILD-TYPE     17     28     13     28     15      7
D147V10, multiclass
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  CLUS_1             0              17
  CLUS_2             4              28
  CLUS_3             0              13
  CLUS_4             4              28
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(148) Variable = PTPN21 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN21 MUTATED        1      3      4      0
  PTPN21 WILD-TYPE     18     50     26     24
D148V1, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              4               26
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN21 MUTATED        3      2      1      2
  PTPN21 WILD-TYPE     32     28     33     24
D148V2, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              1               33
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN21 MUTATED        2      1      0      1      1
  PTPN21 WILD-TYPE     27     17     13      8     12
D148V3, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN21 MUTATED        3      1      0      0      1
  PTPN21 WILD-TYPE     29     17     12     10      9
D148V4, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN21 MUTATED        2      0      0      4      2
  PTPN21 WILD-TYPE     24     20     28     21     18
D148V5, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              4               21
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN21 MUTATED        4      3      1
  PTPN21 WILD-TYPE     44     50     17
D148V6, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              3               50
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN21 MUTATED        0      3      2      3      0
  PTPN21 WILD-TYPE     37     28     15     18     13
D148V7, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              3               28
  CLUS_3              2               15
  CLUS_4              3               18
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN21 MUTATED        4      3      1
  PTPN21 WILD-TYPE     67     24     20
D148V8, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              3               24
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN21 MUTATED        3      1      2      1      0      1      0
  PTPN21 WILD-TYPE     15      7      8      7     36     24     12
D148V9, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              1                7
  CLUS_3              2                8
  CLUS_4              1                7
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN21 MUTATED        1      0      2      4      1      0
  PTPN21 WILD-TYPE     16     32     11     28     15      7
D148V10, multiclass
        clus
vv       PTPN21 MUTATED PTPN21 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              2               11
  CLUS_4              4               28
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(149) Variable = HIBCH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIBCH MUTATED        0      3      2      0
  HIBCH WILD-TYPE     19     50     28     24
D149V1, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIBCH MUTATED        0      2      1      2
  HIBCH WILD-TYPE     35     28     33     24
D149V2, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             0              35
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIBCH MUTATED        1      1      1      0      1
  HIBCH WILD-TYPE     28     17     12      9     12
D149V3, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIBCH MUTATED        0      1      1      1      1
  HIBCH WILD-TYPE     32     17     11      9      9
D149V4, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             0              32
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIBCH MUTATED        0      1      2      1      1
  HIBCH WILD-TYPE     26     19     26     24     19
D149V5, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIBCH MUTATED        2      1      2
  HIBCH WILD-TYPE     46     52     16
D149V6, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIBCH MUTATED        0      3      0      1      1
  HIBCH WILD-TYPE     37     28     17     20     12
D149V7, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             0              37
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIBCH MUTATED        2      2      1
  HIBCH WILD-TYPE     69     25     20
D149V8, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIBCH MUTATED        0      0      2      0      0      2      1
  HIBCH WILD-TYPE     18      8      8      8     36     23     11
D149V9, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIBCH MUTATED        0      2      0      1      1      1
  HIBCH WILD-TYPE     17     30     13     31     15      6
D149V10, multiclass
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(150) Variable = C16ORF79 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF79 MUTATED        1      2      2      0
  C16ORF79 WILD-TYPE     18     51     28     24
D150V1, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                2                 51
  CLUS_3                2                 28
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF79 MUTATED        1      1      3      0
  C16ORF79 WILD-TYPE     34     29     31     26
D150V2, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 29
  CLUS_3                3                 31
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF79 MUTATED        0      1      0      1      0
  C16ORF79 WILD-TYPE     29     17     13      8     13
D150V3, multiclass
[1] "Remove cluster labels:" "C16ORF79 MUTATED"      
clus
  C16ORF79 MUTATED C16ORF79 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AABA 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2J-AABF         TCGA-2J-AABH         TCGA-2J-AABK 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2J-AABO         TCGA-2J-AABR         TCGA-2L-AAQA 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2L-AAQI         TCGA-2L-AAQJ         TCGA-2L-AAQL 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2L-AAQM         TCGA-3A-A9I5         TCGA-3A-A9IB 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-3A-A9IH         TCGA-3A-A9IU         TCGA-3A-A9IX 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-3A-A9IZ         TCGA-3E-AAAZ         TCGA-F2-A44G 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF79 MUTATED        1      1      0      0      0
  C16ORF79 WILD-TYPE     31     17     12     10     10
D150V4, multiclass
[1] "Remove cluster labels:" "C16ORF79 MUTATED"      
clus
  C16ORF79 MUTATED C16ORF79 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AABA 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2J-AABF         TCGA-2J-AABH         TCGA-2J-AABK 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2J-AABO         TCGA-2J-AABR         TCGA-2L-AAQA 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2L-AAQI         TCGA-2L-AAQJ         TCGA-2L-AAQL 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-2L-AAQM         TCGA-3A-A9I5         TCGA-3A-A9IB 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-3A-A9IH         TCGA-3A-A9IU         TCGA-3A-A9IX 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-3A-A9IZ         TCGA-3E-AAAZ         TCGA-F2-A44G 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C16ORF79 WILD-TYPE" "C16ORF79 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF79 MUTATED        2      0      1      2      0
  C16ORF79 WILD-TYPE     24     20     27     23     20
D150V5, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        2      3      0
  C16ORF79 WILD-TYPE     46     50     18
D150V6, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                3                 50
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF79 MUTATED        3      0      1      1      0
  C16ORF79 WILD-TYPE     34     31     16     20     13
D150V7, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                0                 31
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        4      1      0
  C16ORF79 WILD-TYPE     67     26     21
D150V8, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                4                 67
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C16ORF79 MUTATED        1      1      1      0      2      0      0
  C16ORF79 WILD-TYPE     17      7      9      8     34     25     12
D150V9, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C16ORF79 MUTATED        2      1      0      2      0      0
  C16ORF79 WILD-TYPE     15     31     13     30     16      7
D150V10, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(151) Variable = KIAA0430 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0430 MUTATED        1      4      3      1
  KIAA0430 WILD-TYPE     18     49     27     23
D151V1, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                4                 49
  CLUS_3                3                 27
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0430 MUTATED        2      3      3      1
  KIAA0430 WILD-TYPE     33     27     31     25
D151V2, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                3                 27
  CLUS_3                3                 31
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0430 MUTATED        4      0      1      1      1
  KIAA0430 WILD-TYPE     25     18     12      8     12
D151V3, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                4                 25
  CLUS_2                0                 18
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0430 MUTATED        5      0      1      0      1
  KIAA0430 WILD-TYPE     27     18     11     10      9
D151V4, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                5                 27
  CLUS_2                0                 18
  CLUS_3                1                 11
  CLUS_4                0                 10
  CLUS_5                1                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0430 MUTATED        2      3      2      1      1
  KIAA0430 WILD-TYPE     24     17     26     24     19
D151V5, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                3                 17
  CLUS_3                2                 26
  CLUS_4                1                 24
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0430 MUTATED        4      3      2
  KIAA0430 WILD-TYPE     44     50     16
D151V6, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                3                 50
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0430 MUTATED        3      2      1      1      2
  KIAA0430 WILD-TYPE     34     29     16     20     11
D151V7, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                2                 29
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0430 MUTATED        7      1      1
  KIAA0430 WILD-TYPE     64     26     20
D151V8, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                7                 64
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0430 MUTATED        1      1      2      0      3      1      1
  KIAA0430 WILD-TYPE     17      7      8      8     33     24     11
D151V9, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                  7
  CLUS_3                2                  8
  CLUS_4                0                  8
  CLUS_5                3                 33
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0430 MUTATED        2      2      2      1      1      1
  KIAA0430 WILD-TYPE     15     30     11     31     15      6
D151V10, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                2                 30
  CLUS_3                2                 11
  CLUS_4                1                 31
  CLUS_5                1                 15
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(152) Variable = NOX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        2      1      2      1
  NOX5 WILD-TYPE     17     52     28     23
D152V1, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        3      1      1      1
  NOX5 WILD-TYPE     32     29     33     25
D152V2, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        2      1      0      1      1
  NOX5 WILD-TYPE     27     17     13      8     12
D152V3, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        3      1      0      0      1
  NOX5 WILD-TYPE     29     17     12     10      9
D152V4, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        2      0      1      2      1
  NOX5 WILD-TYPE     24     20     27     23     19
D152V5, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        2      3      1
  NOX5 WILD-TYPE     46     50     17
D152V6, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        3      1      1      1      0
  NOX5 WILD-TYPE     34     30     16     20     13
D152V7, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        4      1      1
  NOX5 WILD-TYPE     67     26     20
D152V8, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOX5 MUTATED        1      0      1      0      3      1      0
  NOX5 WILD-TYPE     17      8      9      8     33     24     12
D152V9, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOX5 MUTATED        1      2      0      2      1      0
  NOX5 WILD-TYPE     16     30     13     30     15      7
D152V10, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(153) Variable = NF2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        1      3      1      0
  NF2 WILD-TYPE     18     50     29     24
D153V1, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           1            18
  CLUS_2           3            50
  CLUS_3           1            29
  CLUS_4           0            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        2      1      2      0
  NF2 WILD-TYPE     33     29     32     26
D153V2, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           2            33
  CLUS_2           1            29
  CLUS_3           2            32
  CLUS_4           0            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        1      0      1      1      0
  NF2 WILD-TYPE     28     18     12      8     13
D153V3, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           1            28
  CLUS_2           0            18
  CLUS_3           1            12
  CLUS_4           1             8
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        2      0      1      0      0
  NF2 WILD-TYPE     30     18     11     10     10
D153V4, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           2            30
  CLUS_2           0            18
  CLUS_3           1            11
  CLUS_4           0            10
  CLUS_5           0            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        0      0      2      2      1
  NF2 WILD-TYPE     26     20     26     23     19
D153V5, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            26
  CLUS_2           0            20
  CLUS_3           2            26
  CLUS_4           2            23
  CLUS_5           1            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        3      2      0
  NF2 WILD-TYPE     45     51     18
D153V6, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           3            45
  CLUS_2           2            51
  CLUS_3           0            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        0      2      1      2      0
  NF2 WILD-TYPE     37     29     16     19     13
D153V7, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            37
  CLUS_2           2            29
  CLUS_3           1            16
  CLUS_4           2            19
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        4      1      0
  NF2 WILD-TYPE     67     26     21
D153V8, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           4            67
  CLUS_2           1            26
  CLUS_3           0            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF2 MUTATED        0      0      2      1      1      1      0
  NF2 WILD-TYPE     18      8      8      7     35     24     12
D153V9, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           2             8
  CLUS_4           1             7
  CLUS_5           1            35
  CLUS_6           1            24
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NF2 MUTATED        0      1      2      2      0      0
  NF2 WILD-TYPE     17     31     11     30     16      7
D153V10, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            17
  CLUS_2           1            31
  CLUS_3           2            11
  CLUS_4           2            30
  CLUS_5           0            16
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(154) Variable = EPHB6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB6 MUTATED        1      3      2      1
  EPHB6 WILD-TYPE     18     50     28     23
D154V1, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB6 MUTATED        4      1      2      0
  EPHB6 WILD-TYPE     31     29     32     26
D154V2, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        1      0      1      1      1
  EPHB6 WILD-TYPE     28     18     12      8     12
D154V3, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        2      0      1      0      1
  EPHB6 WILD-TYPE     30     18     11     10      9
D154V4, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        1      1      2      1      2
  EPHB6 WILD-TYPE     25     19     26     24     18
D154V5, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB6 MUTATED        3      3      1
  EPHB6 WILD-TYPE     45     50     17
D154V6, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        1      2      0      4      0
  EPHB6 WILD-TYPE     36     29     17     17     13
D154V7, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             4              17
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB6 MUTATED        6      0      1
  EPHB6 WILD-TYPE     65     27     20
D154V8, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHB6 MUTATED        0      0      1      1      2      1      1
  EPHB6 WILD-TYPE     18      8      9      7     34     24     11
D154V9, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHB6 MUTATED        0      1      2      2      0      1
  EPHB6 WILD-TYPE     17     31     11     30     16      6
D154V10, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(155) Variable = PRMT8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        2      4      1      1
  PRMT8 WILD-TYPE     17     49     29     23
D155V1, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        3      1      4      0
  PRMT8 WILD-TYPE     32     29     30     26
D155V2, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             4              30
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        0      2      1      0      0
  PRMT8 WILD-TYPE     29     16     12      9     13
D155V3, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        0      2      1      0      0
  PRMT8 WILD-TYPE     32     16     11     10     10
D155V4, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        4      0      3      1      0
  PRMT8 WILD-TYPE     22     20     25     24     20
D155V5, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             0              20
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        2      6      0
  PRMT8 WILD-TYPE     46     47     18
D155V6, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             6              47
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        6      0      1      1      0
  PRMT8 WILD-TYPE     31     31     16     20     13
D155V7, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             6              31
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        7      1      0
  PRMT8 WILD-TYPE     64     26     21
D155V8, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRMT8 MUTATED        0      1      0      0      5      1      0
  PRMT8 WILD-TYPE     18      7     10      8     31     24     12
D155V9, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             5              31
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRMT8 MUTATED        0      5      0      2      0      0
  PRMT8 WILD-TYPE     17     27     13     30     16      7
D155V10, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             5              27
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(156) Variable = TNRC6C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        1      6      1      1
  TNRC6C WILD-TYPE     18     47     29     23
D156V1, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1               18
  CLUS_2              6               47
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        6      1      2      0
  TNRC6C WILD-TYPE     29     29     32     26
D156V2, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              6               29
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        2      1      0      3      0
  TNRC6C WILD-TYPE     27     17     13      6     13
D156V3, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              3                6
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        2      1      0      3      0
  TNRC6C WILD-TYPE     30     17     12      7     10
D156V4, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              3                7
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        4      1      1      2      0
  TNRC6C WILD-TYPE     22     19     27     23     20
D156V5, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              4               22
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        4      4      0
  TNRC6C WILD-TYPE     44     49     18
D156V6, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              4               44
  CLUS_2              4               49
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        5      0      0      2      1
  TNRC6C WILD-TYPE     32     31     17     19     12
D156V7, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              5               32
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        6      1      1
  TNRC6C WILD-TYPE     65     26     20
D156V8, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              6               65
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC6C MUTATED        1      0      1      0      4      2      0
  TNRC6C WILD-TYPE     17      8      9      8     32     23     12
D156V9, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              4               32
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNRC6C MUTATED        2      2      1      2      1      0
  TNRC6C WILD-TYPE     15     30     12     30     15      7
D156V10, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               15
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(157) Variable = ZC3H4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H4 MUTATED        1      4      1      2
  ZC3H4 WILD-TYPE     18     49     29     22
D157V1, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H4 MUTATED        2      1      3      1
  ZC3H4 WILD-TYPE     33     29     31     25
D157V2, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        3      2      0      1      0
  ZC3H4 WILD-TYPE     26     16     13      8     13
D157V3, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        4      2      0      0      0
  ZC3H4 WILD-TYPE     28     16     12     10     10
D157V4, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        2      1      1      2      0
  ZC3H4 WILD-TYPE     24     19     27     23     20
D157V5, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H4 MUTATED        4      1      1
  ZC3H4 WILD-TYPE     44     52     17
D157V6, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        3      0      1      1      1
  ZC3H4 WILD-TYPE     34     31     16     20     12
D157V7, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H4 MUTATED        4      1      1
  ZC3H4 WILD-TYPE     67     26     20
D157V8, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H4 MUTATED        0      1      1      0      2      2      0
  ZC3H4 WILD-TYPE     18      7      9      8     34     23     12
D157V9, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H4 MUTATED        1      2      0      2      1      0
  ZC3H4 WILD-TYPE     16     30     13     30     15      7
D157V10, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(158) Variable = NRD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRD1 MUTATED        1      3      4      1
  NRD1 WILD-TYPE     18     50     26     23
D158V1, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            3             50
  CLUS_3            4             26
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRD1 MUTATED        2      3      3      1
  NRD1 WILD-TYPE     33     27     31     25
D158V2, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            3             27
  CLUS_3            3             31
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRD1 MUTATED        0      2      3      1      2
  NRD1 WILD-TYPE     29     16     10      8     11
D158V3, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            2             16
  CLUS_3            3             10
  CLUS_4            1              8
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRD1 MUTATED        2      2      0      0      4
  NRD1 WILD-TYPE     30     16     12     10      6
D158V4, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            2             16
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            4              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRD1 MUTATED        1      2      3      2      1
  NRD1 WILD-TYPE     25     18     25     23     19
D158V5, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             18
  CLUS_3            3             25
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRD1 MUTATED        3      4      2
  NRD1 WILD-TYPE     45     49     16
D158V6, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            4             49
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRD1 MUTATED        2      2      1      3      1
  NRD1 WILD-TYPE     35     29     16     18     12
D158V7, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            3             18
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRD1 MUTATED        6      1      2
  NRD1 WILD-TYPE     65     26     19
D158V8, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            6             65
  CLUS_2            1             26
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRD1 MUTATED        1      0      1      0      2      4      1
  NRD1 WILD-TYPE     17      8      9      8     34     21     11
D158V9, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            4             21
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRD1 MUTATED        0      4      0      2      2      1
  NRD1 WILD-TYPE     17     28     13     30     14      6
D158V10, multiclass
        clus
vv       NRD1 MUTATED NRD1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            4             28
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            2             14
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(159) Variable = ZNF552 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF552 MUTATED        2      0      1      3
  ZNF552 WILD-TYPE     17     53     29     21
D159V1, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              0               53
  CLUS_3              1               29
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF552 MUTATED        1      2      2      1
  ZNF552 WILD-TYPE     34     28     32     25
D159V2, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              2               28
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF552 MUTATED        1      0      0      2      0
  ZNF552 WILD-TYPE     28     18     13      7     13
D159V3, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF552 MUTATED        3      0      0      0      0
  ZNF552 WILD-TYPE     29     18     12     10     10
D159V4, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF552 MUTATED        0      3      2      1      0
  ZNF552 WILD-TYPE     26     17     26     24     20
D159V5, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               17
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF552 MUTATED        2      2      2
  ZNF552 WILD-TYPE     46     51     16
D159V6, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF552 MUTATED        1      0      0      3      2
  ZNF552 WILD-TYPE     36     31     17     18     11
D159V7, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              3               18
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF552 MUTATED        3      1      2
  ZNF552 WILD-TYPE     68     26     19
D159V8, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF552 MUTATED        1      0      1      0      2      0      2
  ZNF552 WILD-TYPE     17      8      9      8     34     25     10
D159V9, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF552 MUTATED        1      2      0      2      0      1
  ZNF552 WILD-TYPE     16     30     13     30     16      6
D159V10, multiclass
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(160) Variable = BCAS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAS1 MUTATED        1      2      1      1
  BCAS1 WILD-TYPE     18     51     29     23
D160V1, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAS1 MUTATED        4      1      0      0
  BCAS1 WILD-TYPE     31     29     34     26
D160V2, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCAS1 MUTATED        3      0      0      1      0
  BCAS1 WILD-TYPE     26     18     13      8     13
D160V3, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCAS1 MUTATED        3      0      0      1      0
  BCAS1 WILD-TYPE     29     18     12      9     10
D160V4, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCAS1 MUTATED        0      1      0      3      1
  BCAS1 WILD-TYPE     26     19     28     22     19
D160V5, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCAS1 MUTATED        3      2      0
  BCAS1 WILD-TYPE     45     51     18
D160V6, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCAS1 MUTATED        1      1      1      1      1
  BCAS1 WILD-TYPE     36     30     16     20     12
D160V7, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCAS1 MUTATED        3      1      1
  BCAS1 WILD-TYPE     68     26     20
D160V8, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCAS1 MUTATED        1      0      0      0      1      3      0
  BCAS1 WILD-TYPE     17      8     10      8     35     22     12
D160V9, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCAS1 MUTATED        0      0      1      3      1      0
  BCAS1 WILD-TYPE     17     32     12     29     15      7
D160V10, multiclass
        clus
vv       BCAS1 MUTATED BCAS1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(161) Variable = SERTAD1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERTAD1 MUTATED        1      2      1      2
  SERTAD1 WILD-TYPE     18     51     29     22
D161V1, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERTAD1 MUTATED        3      0      2      1
  SERTAD1 WILD-TYPE     32     30     32     25
D161V2, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                30
  CLUS_3               2                32
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERTAD1 MUTATED        4      0      0      1      0
  SERTAD1 WILD-TYPE     25     18     13      8     13
D161V3, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               4                25
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERTAD1 MUTATED        5      0      0      0      0
  SERTAD1 WILD-TYPE     27     18     12     10     10
D161V4, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               5                27
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERTAD1 MUTATED        2      1      1      1      1
  SERTAD1 WILD-TYPE     24     19     27     24     19
D161V5, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERTAD1 MUTATED        2      4      0
  SERTAD1 WILD-TYPE     46     49     18
D161V6, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               4                49
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERTAD1 MUTATED        2      1      1      1      1
  SERTAD1 WILD-TYPE     35     30     16     20     12
D161V7, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERTAD1 MUTATED        6      0      0
  SERTAD1 WILD-TYPE     65     27     21
D161V8, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               6                65
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERTAD1 MUTATED        0      1      1      0      3      1      0
  SERTAD1 WILD-TYPE     18      7      9      8     33     24     12
D161V9, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERTAD1 MUTATED        2      2      1      1      0      0
  SERTAD1 WILD-TYPE     15     30     12     31     16      7
D161V10, multiclass
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(162) Variable = GLCCI1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLCCI1 MUTATED        1      2      3      0
  GLCCI1 WILD-TYPE     18     51     27     24
D162V1, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLCCI1 MUTATED        3      1      0      2
  GLCCI1 WILD-TYPE     32     29     34     24
D162V2, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLCCI1 MUTATED        1      1      0      1      1
  GLCCI1 WILD-TYPE     28     17     13      8     12
D162V3, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLCCI1 MUTATED        2      1      1      0      0
  GLCCI1 WILD-TYPE     30     17     11     10     10
D162V4, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLCCI1 MUTATED        0      1      0      3      2
  GLCCI1 WILD-TYPE     26     19     28     22     18
D162V5, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              3               22
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLCCI1 MUTATED        3      3      0
  GLCCI1 WILD-TYPE     45     50     18
D162V6, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLCCI1 MUTATED        0      2      1      2      1
  GLCCI1 WILD-TYPE     37     29     16     19     12
D162V7, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLCCI1 MUTATED        3      2      1
  GLCCI1 WILD-TYPE     68     25     20
D162V8, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               25
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLCCI1 MUTATED        1      0      1      2      0      1      0
  GLCCI1 WILD-TYPE     17      8      9      6     36     24     12
D162V9, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              2                6
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLCCI1 MUTATED        0      0      2      2      1      0
  GLCCI1 WILD-TYPE     17     32     11     30     15      7
D162V10, multiclass
        clus
vv       GLCCI1 MUTATED GLCCI1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              2               11
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(163) Variable = WASF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        1      3      1      3
  WASF3 WILD-TYPE     18     50     29     21
D163V1, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        2      1      3      2
  WASF3 WILD-TYPE     33     29     31     24
D163V2, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        3      2      0      1      1
  WASF3 WILD-TYPE     26     16     13      8     12
D163V3, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        4      2      1      0      0
  WASF3 WILD-TYPE     28     16     11     10     10
D163V4, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        2      2      2      0      2
  WASF3 WILD-TYPE     24     18     26     25     18
D163V5, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             2              26
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        3      4      1
  WASF3 WILD-TYPE     45     49     17
D163V6, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        2      2      1      1      2
  WASF3 WILD-TYPE     35     29     16     20     11
D163V7, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        6      1      1
  WASF3 WILD-TYPE     65     26     20
D163V8, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WASF3 MUTATED        2      0      0      2      3      1      0
  WASF3 WILD-TYPE     16      8     10      6     33     24     12
D163V9, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             2               6
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WASF3 MUTATED        1      3      1      2      1      0
  WASF3 WILD-TYPE     16     29     12     30     15      7
D163V10, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(164) Variable = WDR5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        0      0      2      2
  WDR5 WILD-TYPE     19     53     28     22
D164V1, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            0             53
  CLUS_3            2             28
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        0      3      0      1
  WDR5 WILD-TYPE     35     27     34     25
D164V2, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            3             27
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      0      1      0      0
  WDR5 WILD-TYPE     29     18     12      9     13
D164V3, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-S4-A8RO 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-Z5-AAPL 
"WDR5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      0      0      0      1
  WDR5 WILD-TYPE     32     18     12     10      9
D164V4, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-S4-A8RO 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-Z5-AAPL 
"WDR5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      2      0      2      0
  WDR5 WILD-TYPE     26     18     28     23     20
D164V5, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        2      0      2
  WDR5 WILD-TYPE     46     53     16
D164V6, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            0             53
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      1      1      1      1
  WDR5 WILD-TYPE     37     30     16     20     12
D164V7, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        0      2      2
  WDR5 WILD-TYPE     71     25     19
D164V8, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR5 MUTATED        0      0      1      0      1      1      1
  WDR5 WILD-TYPE     18      8      9      8     35     24     11
D164V9, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR5 MUTATED        0      0      0      2      1      1
  WDR5 WILD-TYPE     17     32     13     30     15      6
D164V10, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(165) Variable = FGF10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF10 MUTATED        2      2      0      2
  FGF10 WILD-TYPE     17     51     30     22
D165V1, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             2              51
  CLUS_3             0              30
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF10 MUTATED        2      0      3      1
  FGF10 WILD-TYPE     33     30     31     25
D165V2, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF10 MUTATED        3      1      0      1      0
  FGF10 WILD-TYPE     26     17     13      8     13
D165V3, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF10 MUTATED        3      0      0      1      1
  FGF10 WILD-TYPE     29     18     12      9      9
D165V4, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF10 MUTATED        1      1      1      2      1
  FGF10 WILD-TYPE     25     19     27     23     19
D165V5, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        3      3      0
  FGF10 WILD-TYPE     45     50     18
D165V6, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF10 MUTATED        3      1      1      1      0
  FGF10 WILD-TYPE     34     30     16     20     13
D165V7, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        5      0      1
  FGF10 WILD-TYPE     66     27     20
D165V8, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGF10 MUTATED        1      0      1      0      3      1      0
  FGF10 WILD-TYPE     17      8      9      8     33     24     12
D165V9, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGF10 MUTATED        0      3      0      2      1      0
  FGF10 WILD-TYPE     17     29     13     30     15      7
D165V10, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(166) Variable = FAM155B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        0      2      1      1
  FAM155B WILD-TYPE     19     51     29     23
D166V1, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        0      3      1      0
  FAM155B WILD-TYPE     35     27     33     26
D166V2, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               0                35
  CLUS_2               3                27
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        1      0      0      1      0
  FAM155B WILD-TYPE     28     18     13      8     13
D166V3, multiclass
[1] "Remove cluster labels:" "FAM155B MUTATED"       
clus
  FAM155B MUTATED FAM155B WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        1      0      0      1      0
  FAM155B WILD-TYPE     31     18     12      9     10
D166V4, multiclass
[1] "Remove cluster labels:" "FAM155B MUTATED"       
clus
  FAM155B MUTATED FAM155B WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        1      1      0      1      0
  FAM155B WILD-TYPE     25     19     28     24     20
D166V5, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED        2      0      1
  FAM155B WILD-TYPE     46     53     17
D166V6, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2                46
  CLUS_2               0                53
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        1      0      1      0      1
  FAM155B WILD-TYPE     36     31     16     21     12
D166V7, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               0                21
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED        1      2      0
  FAM155B WILD-TYPE     70     25     21
D166V8, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               1                70
  CLUS_2               2                25
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM155B MUTATED        1      0      0      0      1      0      1
  FAM155B WILD-TYPE     17      8     10      8     35     25     11
D166V9, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM155B MUTATED        1      0      0      1      0      1
  FAM155B WILD-TYPE     16     32     13     31     16      6
D166V10, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(167) Variable = RBM12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        1      4      1      0
  RBM12 WILD-TYPE     18     49     29     24
D167V1, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        1      0      4      1
  RBM12 WILD-TYPE     34     30     30     25
D167V2, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM12 MUTATED        1      1      1      0      2
  RBM12 WILD-TYPE     28     17     12      9     11
D167V3, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM12 MUTATED        1      2      0      0      2
  RBM12 WILD-TYPE     31     16     12     10      8
D167V4, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM12 MUTATED        3      0      2      0      1
  RBM12 WILD-TYPE     23     20     26     25     19
D167V5, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             0              25
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        2      4      0
  RBM12 WILD-TYPE     46     49     18
D167V6, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM12 MUTATED        4      1      0      1      0
  RBM12 WILD-TYPE     33     30     17     20     13
D167V7, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        5      1      0
  RBM12 WILD-TYPE     66     26     21
D167V8, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM12 MUTATED        1      0      0      0      4      1      0
  RBM12 WILD-TYPE     17      8     10      8     32     24     12
D167V9, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM12 MUTATED        1      3      0      1      1      0
  RBM12 WILD-TYPE     16     29     13     31     15      7
D167V10, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(168) Variable = ZNF337 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF337 MUTATED        2      5      3      0
  ZNF337 WILD-TYPE     17     48     27     24
D168V1, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              5               48
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF337 MUTATED        4      3      2      1
  ZNF337 WILD-TYPE     31     27     32     25
D168V2, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              3               27
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF337 MUTATED        4      1      0      2      0
  ZNF337 WILD-TYPE     25     17     13      7     13
D168V3, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              4               25
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF337 MUTATED        5      1      0      1      0
  ZNF337 WILD-TYPE     27     17     12      9     10
D168V4, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              5               27
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF337 MUTATED        3      1      1      4      1
  ZNF337 WILD-TYPE     23     19     27     21     19
D168V5, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              4               21
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF337 MUTATED        7      1      2
  ZNF337 WILD-TYPE     41     52     16
D168V6, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              7               41
  CLUS_2              1               52
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF337 MUTATED        4      1      2      2      1
  ZNF337 WILD-TYPE     33     30     15     19     12
D168V7, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              1               30
  CLUS_3              2               15
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF337 MUTATED        5      4      1
  ZNF337 WILD-TYPE     66     23     20
D168V8, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              4               23
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF337 MUTATED        1      0      2      0      2      3      2
  ZNF337 WILD-TYPE     17      8      8      8     34     22     10
D168V9, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              3               22
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF337 MUTATED        1      2      0      5      1      1
  ZNF337 WILD-TYPE     16     30     13     27     15      6
D168V10, multiclass
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              5               27
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(169) Variable = C16ORF46 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF46 MUTATED        1      0      2      1
  C16ORF46 WILD-TYPE     18     53     28     23
D169V1, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                0                 53
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF46 MUTATED        2      0      0      2
  C16ORF46 WILD-TYPE     33     30     34     24
D169V2, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                0                 30
  CLUS_3                0                 34
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF46 MUTATED        0      0      0      1      1
  C16ORF46 WILD-TYPE     29     18     13      8     12
D169V3, multiclass
[1] "Remove cluster labels:" "C16ORF46 MUTATED"      
clus
  C16ORF46 MUTATED C16ORF46 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF46 MUTATED        1      0      0      0      1
  C16ORF46 WILD-TYPE     31     18     12     10      9
D169V4, multiclass
[1] "Remove cluster labels:" "C16ORF46 MUTATED"      
clus
  C16ORF46 MUTATED C16ORF46 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C16ORF46 WILD-TYPE" "C16ORF46 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF46 MUTATED        0      1      0      1      2
  C16ORF46 WILD-TYPE     26     19     28     24     18
D169V5, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 19
  CLUS_3                0                 28
  CLUS_4                1                 24
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF46 MUTATED        1      1      2
  C16ORF46 WILD-TYPE     47     52     16
D169V6, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                1                 52
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF46 MUTATED        0      2      0      1      1
  C16ORF46 WILD-TYPE     37     29     17     20     12
D169V7, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                2                 29
  CLUS_3                0                 17
  CLUS_4                1                 20
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF46 MUTATED        2      0      2
  C16ORF46 WILD-TYPE     69     27     19
D169V8, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                0                 27
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C16ORF46 MUTATED        0      0      1      1      0      1      1
  C16ORF46 WILD-TYPE     18      8      9      7     36     24     11
D169V9, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                1                  7
  CLUS_5                0                 36
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C16ORF46 MUTATED        1      0      1      1      1      0
  C16ORF46 WILD-TYPE     16     32     12     31     15      7
D169V10, multiclass
        clus
vv       C16ORF46 MUTATED C16ORF46 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                0                 32
  CLUS_3                1                 12
  CLUS_4                1                 31
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(170) Variable = TAOK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK2 MUTATED        1      3      3      1
  TAOK2 WILD-TYPE     18     50     27     23
D170V1, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK2 MUTATED        3      0      3      2
  TAOK2 WILD-TYPE     32     30     31     24
D170V2, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAOK2 MUTATED        1      0      2      1      2
  TAOK2 WILD-TYPE     28     18     11      8     11
D170V3, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAOK2 MUTATED        3      0      2      0      1
  TAOK2 WILD-TYPE     29     18     10     10      9
D170V4, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAOK2 MUTATED        0      1      4      1      2
  TAOK2 WILD-TYPE     26     19     24     24     18
D170V5, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             4              24
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        3      2      3
  TAOK2 WILD-TYPE     45     51     15
D170V6, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAOK2 MUTATED        1      3      1      2      1
  TAOK2 WILD-TYPE     36     28     16     19     12
D170V7, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        5      1      2
  TAOK2 WILD-TYPE     66     26     19
D170V8, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAOK2 MUTATED        1      0      1      1      2      2      1
  TAOK2 WILD-TYPE     17      8      9      7     34     23     11
D170V9, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAOK2 MUTATED        1      3      0      2      2      0
  TAOK2 WILD-TYPE     16     29     13     30     14      7
D170V10, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(171) Variable = DHX9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX9 MUTATED        0      1      3      3
  DHX9 WILD-TYPE     19     52     27     21
D171V1, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            3             27
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX9 MUTATED        3      1      0      3
  DHX9 WILD-TYPE     32     29     34     23
D171V2, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            3             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX9 MUTATED        2      0      0      2      0
  DHX9 WILD-TYPE     27     18     13      7     13
D171V3, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX9 MUTATED        3      0      0      1      0
  DHX9 WILD-TYPE     29     18     12      9     10
D171V4, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX9 MUTATED        0      0      1      3      3
  DHX9 WILD-TYPE     26     20     27     22     17
D171V5, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            3             22
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DHX9 MUTATED        4      2      1
  DHX9 WILD-TYPE     44     51     17
D171V6, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX9 MUTATED        1      2      1      2      1
  DHX9 WILD-TYPE     36     29     16     19     12
D171V7, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DHX9 MUTATED        4      2      1
  DHX9 WILD-TYPE     67     25     20
D171V8, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHX9 MUTATED        1      0      1      1      2      2      0
  DHX9 WILD-TYPE     17      8      9      7     34     23     12
D171V9, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHX9 MUTATED        0      1      1      3      2      0
  DHX9 WILD-TYPE     17     31     12     29     14      7
D171V10, multiclass
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            3             29
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(172) Variable = ZNF608 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        0      5      3      0
  ZNF608 WILD-TYPE     19     48     27     24
D172V1, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              5               48
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        4      0      2      2
  ZNF608 WILD-TYPE     31     30     32     24
D172V2, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF608 MUTATED        1      0      0      1      2
  ZNF608 WILD-TYPE     28     18     13      8     11
D172V3, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF608 MUTATED        2      0      1      0      1
  ZNF608 WILD-TYPE     30     18     11     10      9
D172V4, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF608 MUTATED        3      0      2      1      2
  ZNF608 WILD-TYPE     23     20     26     24     18
D172V5, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        2      6      0
  ZNF608 WILD-TYPE     46     47     18
D172V6, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              6               47
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF608 MUTATED        2      3      0      2      1
  ZNF608 WILD-TYPE     35     28     17     19     12
D172V7, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              3               28
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        7      0      1
  ZNF608 WILD-TYPE     64     27     20
D172V8, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF608 MUTATED        0      1      2      1      2      1      1
  ZNF608 WILD-TYPE     18      7      8      7     34     24     11
D172V9, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              2                8
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF608 MUTATED        2      1      2      2      1      0
  ZNF608 WILD-TYPE     15     31     11     30     15      7
D172V10, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1               31
  CLUS_3              2               11
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(173) Variable = SLITRK5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK5 MUTATED        4      5      5      1
  SLITRK5 WILD-TYPE     15     48     25     23
D173V1, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               4                15
  CLUS_2               5                48
  CLUS_3               5                25
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK5 MUTATED        6      5      3      1
  SLITRK5 WILD-TYPE     29     25     31     25
D173V2, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               6                29
  CLUS_2               5                25
  CLUS_3               3                31
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK5 MUTATED        3      1      3      1      0
  SLITRK5 WILD-TYPE     26     17     10      8     13
D173V3, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               3                26
  CLUS_2               1                17
  CLUS_3               3                10
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK5 MUTATED        4      1      2      0      1
  SLITRK5 WILD-TYPE     28     17     10     10      9
D173V4, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               4                28
  CLUS_2               1                17
  CLUS_3               2                10
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK5 MUTATED        2      4      3      4      2
  SLITRK5 WILD-TYPE     24     16     25     21     18
D173V5, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               4                16
  CLUS_3               3                25
  CLUS_4               4                21
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        7      6      2
  SLITRK5 WILD-TYPE     41     47     16
D173V6, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               7                41
  CLUS_2               6                47
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK5 MUTATED        3      3      3      5      1
  SLITRK5 WILD-TYPE     34     28     14     16     12
D173V7, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               3                28
  CLUS_3               3                14
  CLUS_4               5                16
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        9      5      1
  SLITRK5 WILD-TYPE     62     22     20
D173V8, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               9                62
  CLUS_2               5                22
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLITRK5 MUTATED        4      1      1      1      2      2      3
  SLITRK5 WILD-TYPE     14      7      9      7     34     23      9
D173V9, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               4                14
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               2                23
  CLUS_7               3                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLITRK5 MUTATED        2      2      2      5      1      2
  SLITRK5 WILD-TYPE     15     30     11     27     15      5
D173V10, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               2                30
  CLUS_3               2                11
  CLUS_4               5                27
  CLUS_5               1                15
  CLUS_6               2                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(174) Variable = KIAA0802 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0802 MUTATED        0      1      3      1
  KIAA0802 WILD-TYPE     19     52     27     23
D174V1, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                1                 52
  CLUS_3                3                 27
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0802 MUTATED        3      1      0      1
  KIAA0802 WILD-TYPE     32     29     34     25
D174V2, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                1                 29
  CLUS_3                0                 34
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0802 MUTATED        1      1      0      0      0
  KIAA0802 WILD-TYPE     28     17     13      9     13
D174V3, multiclass
[1] "Remove cluster labels:" "KIAA0802 MUTATED"      
clus
  KIAA0802 MUTATED KIAA0802 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SS         TCGA-IB-A5ST 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77G         TCGA-US-A77J 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0802 MUTATED        2      0      0      0      0
  KIAA0802 WILD-TYPE     30     18     12     10     10
D174V4, multiclass
[1] "Remove cluster labels:" "KIAA0802 MUTATED"      
clus
  KIAA0802 MUTATED KIAA0802 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SS         TCGA-IB-A5ST 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77G         TCGA-US-A77J 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"KIAA0802 WILD-TYPE" "KIAA0802 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0802 MUTATED        3      1      0      1      0
  KIAA0802 WILD-TYPE     23     19     28     24     20
D174V5, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                1                 19
  CLUS_3                0                 28
  CLUS_4                1                 24
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0802 MUTATED        1      3      1
  KIAA0802 WILD-TYPE     47     50     17
D174V6, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                3                 50
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0802 MUTATED        2      0      1      1      1
  KIAA0802 WILD-TYPE     35     31     16     20     12
D174V7, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                0                 31
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0802 MUTATED        3      1      1
  KIAA0802 WILD-TYPE     68     26     20
D174V8, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0802 MUTATED        0      1      1      0      1      1      0
  KIAA0802 WILD-TYPE     18      7      9      8     35     24     12
D174V9, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                1                 35
  CLUS_6                1                 24
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0802 MUTATED        0      2      0      1      1      0
  KIAA0802 WILD-TYPE     17     30     13     31     15      7
D174V10, multiclass
        clus
vv       KIAA0802 MUTATED KIAA0802 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                2                 30
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(175) Variable = CTRL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTRL MUTATED        2      1      1      1
  CTRL WILD-TYPE     17     52     29     23
D175V1, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTRL MUTATED        3      0      0      2
  CTRL WILD-TYPE     32     30     34     24
D175V2, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            0             34
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTRL MUTATED        0      1      0      1      0
  CTRL WILD-TYPE     29     17     13      8     13
D175V3, multiclass
[1] "Remove cluster labels:" "CTRL MUTATED"          
clus
  CTRL MUTATED CTRL WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-IB-7652 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTRL MUTATED        1      1      0      0      0
  CTRL WILD-TYPE     31     17     12     10     10
D175V4, multiclass
[1] "Remove cluster labels:" "CTRL MUTATED"          
clus
  CTRL MUTATED CTRL WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-IB-7652 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTRL MUTATED        1      0      1      1      2
  CTRL WILD-TYPE     25     20     27     24     18
D175V5, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTRL MUTATED        2      3      0
  CTRL WILD-TYPE     46     50     18
D175V6, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTRL MUTATED        1      3      0      1      0
  CTRL WILD-TYPE     36     28     17     20     13
D175V7, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            1             36
  CLUS_2            3             28
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTRL MUTATED        5      0      0
  CTRL WILD-TYPE     66     27     21
D175V8, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            5             66
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTRL MUTATED        1      0      2      1      0      1      0
  CTRL WILD-TYPE     17      8      8      7     36     24     12
D175V9, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            1              7
  CLUS_5            0             36
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTRL MUTATED        1      2      1      1      0      0
  CTRL WILD-TYPE     16     30     12     31     16      7
D175V10, multiclass
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(176) Variable = DHX36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        2      6      1      1
  DHX36 WILD-TYPE     17     47     29     23
D176V1, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             6              47
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        4      2      2      2
  DHX36 WILD-TYPE     31     28     32     24
D176V2, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        2      3      0      2      0
  DHX36 WILD-TYPE     27     15     13      7     13
D176V3, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             3              15
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        3      2      0      1      1
  DHX36 WILD-TYPE     29     16     12      9      9
D176V4, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        3      1      1      4      1
  DHX36 WILD-TYPE     23     19     27     21     19
D176V5, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             4              21
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED        5      5      0
  DHX36 WILD-TYPE     43     48     18
D176V6, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        5      1      2      1      1
  DHX36 WILD-TYPE     32     30     15     20     12
D176V7, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED        6      3      1
  DHX36 WILD-TYPE     65     24     20
D176V8, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHX36 MUTATED        0      1      2      0      6      0      1
  DHX36 WILD-TYPE     18      7      8      8     30     25     11
D176V9, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             6              30
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHX36 MUTATED        1      4      0      4      1      0
  DHX36 WILD-TYPE     16     28     13     28     15      7
D176V10, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             4              28
  CLUS_3             0              13
  CLUS_4             4              28
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(177) Variable = GTF3C3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED        1      1      3      0
  GTF3C3 WILD-TYPE     18     52     27     24
D177V1, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED        0      1      2      2
  GTF3C3 WILD-TYPE     35     29     32     24
D177V2, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C3 MUTATED        1      0      2      0      1
  GTF3C3 WILD-TYPE     28     18     11      9     12
D177V3, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              2               11
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C3 MUTATED        1      0      2      0      1
  GTF3C3 WILD-TYPE     31     18     10     10      9
D177V4, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              0               18
  CLUS_3              2               10
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C3 MUTATED        1      1      1      0      2
  GTF3C3 WILD-TYPE     25     19     27     25     18
D177V5, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              0               25
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C3 MUTATED        2      1      2
  GTF3C3 WILD-TYPE     46     52     16
D177V6, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C3 MUTATED        1      3      0      1      0
  GTF3C3 WILD-TYPE     36     28     17     20     13
D177V7, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              3               28
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C3 MUTATED        3      0      2
  GTF3C3 WILD-TYPE     68     27     19
D177V8, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTF3C3 MUTATED        0      1      0      0      1      2      1
  GTF3C3 WILD-TYPE     18      7     10      8     35     23     11
D177V9, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GTF3C3 MUTATED        2      0      0      0      2      1
  GTF3C3 WILD-TYPE     15     32     13     32     14      6
D177V10, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              0               32
  CLUS_5              2               14
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(178) Variable = OTX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX1 MUTATED        2      2      3      0
  OTX1 WILD-TYPE     17     51     27     24
D178V1, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            3             27
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX1 MUTATED        3      1      3      0
  OTX1 WILD-TYPE     32     29     31     26
D178V2, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            3             31
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX1 MUTATED        1      1      2      2      1
  OTX1 WILD-TYPE     28     17     11      7     12
D178V3, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            2             11
  CLUS_4            2              7
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX1 MUTATED        3      0      2      1      1
  OTX1 WILD-TYPE     29     18     10      9      9
D178V4, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            2             10
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX1 MUTATED        1      1      3      2      0
  OTX1 WILD-TYPE     25     19     25     23     20
D178V5, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            3             25
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX1 MUTATED        3      3      1
  OTX1 WILD-TYPE     45     50     17
D178V6, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX1 MUTATED        4      1      0      1      1
  OTX1 WILD-TYPE     33     30     17     20     12
D178V7, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX1 MUTATED        5      1      1
  OTX1 WILD-TYPE     66     26     20
D178V8, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OTX1 MUTATED        0      2      1      0      3      1      0
  OTX1 WILD-TYPE     18      6      9      8     33     24     12
D178V9, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            2              6
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OTX1 MUTATED        1      3      0      2      1      0
  OTX1 WILD-TYPE     16     29     13     30     15      7
D178V10, multiclass
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            3             29
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(179) Variable = MTMR15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR15 MUTATED        3      3      1      1
  MTMR15 WILD-TYPE     16     50     29     23
D179V1, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              3               16
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR15 MUTATED        3      2      3      0
  MTMR15 WILD-TYPE     32     28     31     26
D179V2, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              3               31
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR15 MUTATED        2      1      0      2      1
  MTMR15 WILD-TYPE     27     17     13      7     12
D179V3, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR15 MUTATED        4      1      1      0      0
  MTMR15 WILD-TYPE     28     17     11     10     10
D179V4, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR15 MUTATED        3      1      1      3      0
  MTMR15 WILD-TYPE     23     19     27     22     20
D179V5, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MTMR15 MUTATED        6      2      0
  MTMR15 WILD-TYPE     42     51     18
D179V6, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              6               42
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR15 MUTATED        5      0      1      1      1
  MTMR15 WILD-TYPE     32     31     16     20     12
D179V7, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MTMR15 MUTATED        6      2      0
  MTMR15 WILD-TYPE     65     25     21
D179V8, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              6               65
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTMR15 MUTATED        2      0      1      0      4      1      0
  MTMR15 WILD-TYPE     16      8      9      8     32     24     12
D179V9, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              4               32
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTMR15 MUTATED        1      3      0      4      0      0
  MTMR15 WILD-TYPE     16     29     13     28     16      7
D179V10, multiclass
        clus
vv       MTMR15 MUTATED MTMR15 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              4               28
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(180) Variable = IYD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IYD MUTATED        1      2      2      1
  IYD WILD-TYPE     18     51     28     23
D180V1, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           1            18
  CLUS_2           2            51
  CLUS_3           2            28
  CLUS_4           1            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IYD MUTATED        1      2      2      1
  IYD WILD-TYPE     34     28     32     25
D180V2, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           1            34
  CLUS_2           2            28
  CLUS_3           2            32
  CLUS_4           1            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IYD MUTATED        2      0      1      0      2
  IYD WILD-TYPE     27     18     12      9     11
D180V3, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           2            27
  CLUS_2           0            18
  CLUS_3           1            12
  CLUS_4           0             9
  CLUS_5           2            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IYD MUTATED        2      1      1      0      1
  IYD WILD-TYPE     30     17     11     10      9
D180V4, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           2            30
  CLUS_2           1            17
  CLUS_3           1            11
  CLUS_4           0            10
  CLUS_5           1             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IYD MUTATED        2      0      1      1      1
  IYD WILD-TYPE     24     20     27     24     19
D180V5, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           2            24
  CLUS_2           0            20
  CLUS_3           1            27
  CLUS_4           1            24
  CLUS_5           1            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        3      2      0
  IYD WILD-TYPE     45     51     18
D180V6, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           3            45
  CLUS_2           2            51
  CLUS_3           0            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IYD MUTATED        3      1      0      1      0
  IYD WILD-TYPE     34     30     17     20     13
D180V7, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           3            34
  CLUS_2           1            30
  CLUS_3           0            17
  CLUS_4           1            20
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IYD MUTATED        4      1      0
  IYD WILD-TYPE     67     26     21
D180V8, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           4            67
  CLUS_2           1            26
  CLUS_3           0            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IYD MUTATED        1      0      0      1      3      0      0
  IYD WILD-TYPE     17      8     10      7     33     25     12
D180V9, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           1            17
  CLUS_2           0             8
  CLUS_3           0            10
  CLUS_4           1             7
  CLUS_5           3            33
  CLUS_6           0            25
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IYD MUTATED        1      2      1      1      0      0
  IYD WILD-TYPE     16     30     12     31     16      7
D180V10, multiclass
        clus
vv       IYD MUTATED IYD WILD-TYPE
  CLUS_1           1            16
  CLUS_2           2            30
  CLUS_3           1            12
  CLUS_4           1            31
  CLUS_5           0            16
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(181) Variable = GTF2F1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2F1 MUTATED        0      1      3      1
  GTF2F1 WILD-TYPE     19     52     27     23
D181V1, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              3               27
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2F1 MUTATED        3      1      0      1
  GTF2F1 WILD-TYPE     32     29     34     25
D181V2, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF2F1 MUTATED        1      2      0      1      0
  GTF2F1 WILD-TYPE     28     16     13      8     13
D181V3, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF2F1 MUTATED        3      1      0      0      0
  GTF2F1 WILD-TYPE     29     17     12     10     10
D181V4, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF2F1 MUTATED        1      1      1      2      0
  GTF2F1 WILD-TYPE     25     19     27     23     20
D181V5, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF2F1 MUTATED        3      1      1
  GTF2F1 WILD-TYPE     45     52     17
D181V6, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF2F1 MUTATED        2      0      0      2      1
  GTF2F1 WILD-TYPE     35     31     17     19     12
D181V7, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF2F1 MUTATED        3      1      1
  GTF2F1 WILD-TYPE     68     26     20
D181V8, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTF2F1 MUTATED        0      1      1      0      1      1      0
  GTF2F1 WILD-TYPE     18      7      9      8     35     24     12
D181V9, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GTF2F1 MUTATED        0      2      0      1      1      0
  GTF2F1 WILD-TYPE     17     30     13     31     15      7
D181V10, multiclass
        clus
vv       GTF2F1 MUTATED GTF2F1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(182) Variable = DIDO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIDO1 MUTATED        0      3      9      2
  DIDO1 WILD-TYPE     19     50     21     22
D182V1, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             9              21
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIDO1 MUTATED        7      3      2      2
  DIDO1 WILD-TYPE     28     27     32     24
D182V2, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             7              28
  CLUS_2             3              27
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED        3      3      2      1      1
  DIDO1 WILD-TYPE     26     15     11      8     12
D182V3, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             3              15
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED        5      3      0      0      2
  DIDO1 WILD-TYPE     27     15     12     10      8
D182V4, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             3              15
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED        5      2      3      3      1
  DIDO1 WILD-TYPE     21     18     25     22     19
D182V5, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             5              21
  CLUS_2             2              18
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIDO1 MUTATED        4      7      3
  DIDO1 WILD-TYPE     44     46     15
D182V6, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             7              46
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED        5      4      1      2      2
  DIDO1 WILD-TYPE     32     27     16     19     11
D182V7, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             4              27
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIDO1 MUTATED        8      4      2
  DIDO1 WILD-TYPE     63     23     19
D182V8, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             4              23
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIDO1 MUTATED        1      1      2      2      3      3      1
  DIDO1 WILD-TYPE     17      7      8      6     33     22     11
D182V9, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             2               6
  CLUS_5             3              33
  CLUS_6             3              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DIDO1 MUTATED        0      5      1      4      2      1
  DIDO1 WILD-TYPE     17     27     12     28     14      6
D182V10, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             5              27
  CLUS_3             1              12
  CLUS_4             4              28
  CLUS_5             2              14
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(183) Variable = GNL3L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNL3L MUTATED        2      1      2      0
  GNL3L WILD-TYPE     17     52     28     24
D183V1, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNL3L MUTATED        0      0      2      3
  GNL3L WILD-TYPE     35     30     32     23
D183V2, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             0              35
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNL3L MUTATED        1      2      0      0      0
  GNL3L WILD-TYPE     28     16     13      9     13
D183V3, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNL3L MUTATED        1      2      0      0      0
  GNL3L WILD-TYPE     31     16     12     10     10
D183V4, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             1              31
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNL3L MUTATED        2      0      1      0      2
  GNL3L WILD-TYPE     24     20     27     25     18
D183V5, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNL3L MUTATED        1      3      1
  GNL3L WILD-TYPE     47     50     17
D183V6, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             1              47
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNL3L MUTATED        2      3      0      0      0
  GNL3L WILD-TYPE     35     28     17     21     13
D183V7, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNL3L MUTATED        3      1      1
  GNL3L WILD-TYPE     68     26     20
D183V8, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNL3L MUTATED        0      0      1      0      2      2      0
  GNL3L WILD-TYPE     18      8      9      8     34     23     12
D183V9, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNL3L MUTATED        0      3      0      0      2      0
  GNL3L WILD-TYPE     17     29     13     32     14      7
D183V10, multiclass
        clus
vv       GNL3L MUTATED GNL3L WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             0              32
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(184) Variable = ZC3H7B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H7B MUTATED        2      1      2      2
  ZC3H7B WILD-TYPE     17     52     28     22
D184V1, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              2               17
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H7B MUTATED        2      0      1      4
  ZC3H7B WILD-TYPE     33     30     33     22
D184V2, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              4               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H7B MUTATED        2      2      1      1      0
  ZC3H7B WILD-TYPE     27     16     12      8     13
D184V3, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              2               27
  CLUS_2              2               16
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H7B MUTATED        3      2      1      0      0
  ZC3H7B WILD-TYPE     29     16     11     10     10
D184V4, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              3               29
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H7B MUTATED        0      1      2      1      3
  ZC3H7B WILD-TYPE     26     19     26     24     17
D184V5, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H7B MUTATED        2      4      1
  ZC3H7B WILD-TYPE     46     49     17
D184V6, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              2               46
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H7B MUTATED        1      4      0      1      1
  ZC3H7B WILD-TYPE     36     27     17     20     12
D184V7, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              1               36
  CLUS_2              4               27
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H7B MUTATED        6      0      1
  ZC3H7B WILD-TYPE     65     27     20
D184V8, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              6               65
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H7B MUTATED        0      0      1      3      1      2      0
  ZC3H7B WILD-TYPE     18      8      9      5     35     23     12
D184V9, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              3                5
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H7B MUTATED        0      2      3      1      1      0
  ZC3H7B WILD-TYPE     17     30     10     31     15      7
D184V10, multiclass
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              3               10
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(185) Variable = COL4A4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A4 MUTATED        2      3      4      0
  COL4A4 WILD-TYPE     17     50     26     24
D185V1, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              3               50
  CLUS_3              4               26
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A4 MUTATED        2      2      3      2
  COL4A4 WILD-TYPE     33     28     31     24
D185V2, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              3               31
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL4A4 MUTATED        0      1      0      1      2
  COL4A4 WILD-TYPE     29     17     13      8     11
D185V3, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL4A4 MUTATED        1      1      1      0      1
  COL4A4 WILD-TYPE     31     17     11     10      9
D185V4, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL4A4 MUTATED        2      0      2      3      2
  COL4A4 WILD-TYPE     24     20     26     22     18
D185V5, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              3               22
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL4A4 MUTATED        4      5      0
  COL4A4 WILD-TYPE     44     48     18
D185V6, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              5               48
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL4A4 MUTATED        2      2      2      3      0
  COL4A4 WILD-TYPE     35     29     15     18     13
D185V7, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              2               15
  CLUS_4              3               18
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL4A4 MUTATED        7      2      0
  COL4A4 WILD-TYPE     64     25     21
D185V8, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL4A4 MUTATED        0      0      2      2      4      0      0
  COL4A4 WILD-TYPE     18      8      8      6     32     25     12
D185V9, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              2                6
  CLUS_5              4               32
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL4A4 MUTATED        0      2      3      3      0      0
  COL4A4 WILD-TYPE     17     30     10     29     16      7
D185V10, multiclass
        clus
vv       COL4A4 MUTATED COL4A4 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              3               10
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(186) Variable = SYCP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2 MUTATED        2      3      3      0
  SYCP2 WILD-TYPE     17     50     27     24
D186V1, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2 MUTATED        2      3      2      1
  SYCP2 WILD-TYPE     33     27     32     25
D186V2, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              27
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        1      0      2      1      1
  SYCP2 WILD-TYPE     28     18     11      8     12
D186V3, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        2      0      2      0      1
  SYCP2 WILD-TYPE     30     18     10     10      9
D186V4, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        1      2      1      2      2
  SYCP2 WILD-TYPE     25     18     27     23     18
D186V5, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        3      3      2
  SYCP2 WILD-TYPE     45     50     16
D186V6, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        2      2      1      2      1
  SYCP2 WILD-TYPE     35     29     16     19     12
D186V7, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        4      1      3
  SYCP2 WILD-TYPE     67     26     18
D186V8, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYCP2 MUTATED        0      0      1      1      2      2      2
  SYCP2 WILD-TYPE     18      8      9      7     34     23     10
D186V9, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYCP2 MUTATED        0      1      1      3      2      1
  SYCP2 WILD-TYPE     17     31     12     29     14      6
D186V10, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             2              14
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(187) Variable = CNKSR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNKSR2 MUTATED        1      5      4      1
  CNKSR2 WILD-TYPE     18     48     26     23
D187V1, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              5               48
  CLUS_3              4               26
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNKSR2 MUTATED        4      3      2      2
  CNKSR2 WILD-TYPE     31     27     32     24
D187V2, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              3               27
  CLUS_3              2               32
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR2 MUTATED        2      3      0      1      1
  CNKSR2 WILD-TYPE     27     15     13      8     12
D187V3, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              3               15
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR2 MUTATED        3      3      1      0      0
  CNKSR2 WILD-TYPE     29     15     11     10     10
D187V4, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              3               15
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR2 MUTATED        2      2      2      4      1
  CNKSR2 WILD-TYPE     24     18     26     21     19
D187V5, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               18
  CLUS_3              2               26
  CLUS_4              4               21
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR2 MUTATED        7      3      1
  CNKSR2 WILD-TYPE     41     50     17
D187V6, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              7               41
  CLUS_2              3               50
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR2 MUTATED        4      2      1      3      1
  CNKSR2 WILD-TYPE     33     29     16     18     12
D187V7, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              3               18
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR2 MUTATED        6      3      2
  CNKSR2 WILD-TYPE     65     24     19
D187V8, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              6               65
  CLUS_2              3               24
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNKSR2 MUTATED        2      0      2      0      4      3      0
  CNKSR2 WILD-TYPE     16      8      8      8     32     22     12
D187V9, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              4               32
  CLUS_6              3               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNKSR2 MUTATED        0      4      1      4      1      1
  CNKSR2 WILD-TYPE     17     28     12     28     15      6
D187V10, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              4               28
  CLUS_3              1               12
  CLUS_4              4               28
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(188) Variable = OR5A1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        1      3      1      0
  OR5A1 WILD-TYPE     18     50     29     24
D188V1, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        2      1      2      0
  OR5A1 WILD-TYPE     33     29     32     26
D188V2, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5A1 MUTATED        1      0      0      1      1
  OR5A1 WILD-TYPE     28     18     13      8     12
D188V3, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5A1 MUTATED        2      0      1      0      0
  OR5A1 WILD-TYPE     30     18     11     10     10
D188V4, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5A1 MUTATED        2      0      0      3      0
  OR5A1 WILD-TYPE     24     20     28     22     20
D188V5, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5A1 MUTATED        3      2      0
  OR5A1 WILD-TYPE     45     51     18
D188V6, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5A1 MUTATED        3      0      1      1      0
  OR5A1 WILD-TYPE     34     31     16     20     13
D188V7, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5A1 MUTATED        4      1      0
  OR5A1 WILD-TYPE     67     26     21
D188V8, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5A1 MUTATED        0      0      2      0      2      1      0
  OR5A1 WILD-TYPE     18      8      8      8     34     24     12
D188V9, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR5A1 MUTATED        1      1      0      3      0      0
  OR5A1 WILD-TYPE     16     31     13     29     16      7
D188V10, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(189) Variable = OSBPL3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL3 MUTATED        1      3      3      1
  OSBPL3 WILD-TYPE     18     50     27     23
D189V1, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              3               27
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL3 MUTATED        3      1      0      4
  OSBPL3 WILD-TYPE     32     29     34     22
D189V2, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              4               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL3 MUTATED        0      1      0      1      1
  OSBPL3 WILD-TYPE     29     17     13      8     12
D189V3, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL3 MUTATED        2      0      0      0      1
  OSBPL3 WILD-TYPE     30     18     12     10      9
D189V4, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL3 MUTATED        2      0      0      2      4
  OSBPL3 WILD-TYPE     24     20     28     23     16
D189V5, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              4               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL3 MUTATED        3      5      0
  OSBPL3 WILD-TYPE     45     48     18
D189V6, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              5               48
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL3 MUTATED        2      4      1      1      0
  OSBPL3 WILD-TYPE     35     27     16     20     13
D189V7, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              4               27
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL3 MUTATED        7      1      0
  OSBPL3 WILD-TYPE     64     26     21
D189V8, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSBPL3 MUTATED        0      1      2      1      2      2      0
  OSBPL3 WILD-TYPE     18      7      8      7     34     23     12
D189V9, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              2                8
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBPL3 MUTATED        1      1      3      2      1      0
  OSBPL3 WILD-TYPE     16     31     10     30     15      7
D189V10, multiclass
        clus
vv       OSBPL3 MUTATED OSBPL3 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              3               10
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(190) Variable = HSP90AB1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AB1 MUTATED        0      1      3      1
  HSP90AB1 WILD-TYPE     19     52     27     23
D190V1, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                1                 52
  CLUS_3                3                 27
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AB1 MUTATED        1      3      0      1
  HSP90AB1 WILD-TYPE     34     27     34     25
D190V2, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                3                 27
  CLUS_3                0                 34
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AB1 MUTATED        0      0      1      0      1
  HSP90AB1 WILD-TYPE     29     18     12      9     12
D190V3, multiclass
[1] "Remove cluster labels:" "HSP90AB1 MUTATED"      
clus
  HSP90AB1 MUTATED HSP90AB1 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SP 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AB1 MUTATED        1      0      0      0      1
  HSP90AB1 WILD-TYPE     31     18     12     10      9
D190V4, multiclass
[1] "Remove cluster labels:" "HSP90AB1 MUTATED"      
clus
  HSP90AB1 MUTATED HSP90AB1 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SP 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"HSP90AB1 WILD-TYPE" "HSP90AB1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AB1 MUTATED        0      1      1      2      1
  HSP90AB1 WILD-TYPE     26     19     27     23     19
D190V5, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 19
  CLUS_3                1                 27
  CLUS_4                2                 23
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AB1 MUTATED        2      1      2
  HSP90AB1 WILD-TYPE     46     52     16
D190V6, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                1                 52
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AB1 MUTATED        1      1      2      0      1
  HSP90AB1 WILD-TYPE     36     30     15     21     12
D190V7, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                1                 30
  CLUS_3                2                 15
  CLUS_4                0                 21
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AB1 MUTATED        2      2      1
  HSP90AB1 WILD-TYPE     69     25     20
D190V8, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                2                 25
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSP90AB1 MUTATED        0      0      1      0      2      1      1
  HSP90AB1 WILD-TYPE     18      8      9      8     34     24     11
D190V9, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSP90AB1 MUTATED        1      1      0      2      1      0
  HSP90AB1 WILD-TYPE     16     31     13     30     15      7
D190V10, multiclass
        clus
vv       HSP90AB1 MUTATED HSP90AB1 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(191) Variable = PLAUR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAUR MUTATED        0      2      0      2
  PLAUR WILD-TYPE     19     51     30     22
D191V1, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             0              30
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAUR MUTATED        1      1      1      1
  PLAUR WILD-TYPE     34     29     33     25
D191V2, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAUR MUTATED        1      0      0      1      0
  PLAUR WILD-TYPE     28     18     13      8     13
D191V3, multiclass
[1] "Remove cluster labels:" "PLAUR MUTATED"         
clus
  PLAUR MUTATED PLAUR WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAUR MUTATED        1      0      0      1      0
  PLAUR WILD-TYPE     31     18     12      9     10
D191V4, multiclass
[1] "Remove cluster labels:" "PLAUR MUTATED"         
clus
  PLAUR MUTATED PLAUR WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAUR MUTATED        1      0      0      1      1
  PLAUR WILD-TYPE     25     20     28     24     19
D191V5, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLAUR MUTATED        2      0      1
  PLAUR WILD-TYPE     46     53     17
D191V6, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             2              46
  CLUS_2             0              53
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAUR MUTATED        0      0      2      0      1
  PLAUR WILD-TYPE     37     31     15     21     12
D191V7, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLAUR MUTATED        1      1      1
  PLAUR WILD-TYPE     70     26     20
D191V8, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLAUR MUTATED        1      0      0      1      1      0      0
  PLAUR WILD-TYPE     17      8     10      7     35     25     12
D191V9, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLAUR MUTATED        1      0      0      1      1      0
  PLAUR WILD-TYPE     16     32     13     31     15      7
D191V10, multiclass
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(192) Variable = GPC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPC2 MUTATED        1      3      0      1
  GPC2 WILD-TYPE     18     50     30     23
D192V1, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            3             50
  CLUS_3            0             30
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPC2 MUTATED        0      2      3      0
  GPC2 WILD-TYPE     35     28     31     26
D192V2, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            2             28
  CLUS_3            3             31
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC2 MUTATED        2      0      0      0      1
  GPC2 WILD-TYPE     27     18     13      9     12
D192V3, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            0              9
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC2 MUTATED        1      0      1      1      0
  GPC2 WILD-TYPE     31     18     11      9     10
D192V4, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC2 MUTATED        2      1      1      1      0
  GPC2 WILD-TYPE     24     19     27     24     20
D192V5, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPC2 MUTATED        2      2      1
  GPC2 WILD-TYPE     46     51     17
D192V6, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC2 MUTATED        1      0      2      2      0
  GPC2 WILD-TYPE     36     31     15     19     13
D192V7, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            2             15
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPC2 MUTATED        2      2      1
  GPC2 WILD-TYPE     69     25     20
D192V8, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPC2 MUTATED        1      0      0      0      2      0      2
  GPC2 WILD-TYPE     17      8     10      8     34     25     10
D192V9, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPC2 MUTATED        0      1      1      2      0      1
  GPC2 WILD-TYPE     17     31     12     30     16      6
D192V10, multiclass
        clus
vv       GPC2 MUTATED GPC2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(193) Variable = ACBD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACBD3 MUTATED        0      1      2      1
  ACBD3 WILD-TYPE     19     52     28     23
D193V1, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACBD3 MUTATED        1      1      1      1
  ACBD3 WILD-TYPE     34     29     33     25
D193V2, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACBD3 MUTATED        0      1      1      1      0
  ACBD3 WILD-TYPE     29     17     12      8     13
D193V3, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACBD3 MUTATED        1      1      0      0      1
  ACBD3 WILD-TYPE     31     17     12     10      9
D193V4, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACBD3 MUTATED        0      0      1      2      1
  ACBD3 WILD-TYPE     26     20     27     23     19
D193V5, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACBD3 MUTATED        2      2      0
  ACBD3 WILD-TYPE     46     51     18
D193V6, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACBD3 MUTATED        1      2      0      1      0
  ACBD3 WILD-TYPE     36     29     17     20     13
D193V7, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACBD3 MUTATED        3      1      0
  ACBD3 WILD-TYPE     68     26     21
D193V8, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACBD3 MUTATED        0      0      1      1      1      1      0
  ACBD3 WILD-TYPE     18      8      9      7     35     24     12
D193V9, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACBD3 MUTATED        0      1      1      2      0      0
  ACBD3 WILD-TYPE     17     31     12     30     16      7
D193V10, multiclass
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(194) Variable = PURB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PURB MUTATED        1      1      1      1
  PURB WILD-TYPE     18     52     29     23
D194V1, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            1             18
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PURB MUTATED        1      1      2      0
  PURB WILD-TYPE     34     29     32     26
D194V2, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PURB MUTATED        0      1      0      0      1
  PURB WILD-TYPE     29     17     13      9     12
D194V3, multiclass
[1] "Remove cluster labels:" "PURB MUTATED"          
clus
  PURB MUTATED PURB WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-AA9M     TCGA-S4-A8RO 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XN-A8T5 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PURB MUTATED        0      1      1      0      0
  PURB WILD-TYPE     32     17     11     10     10
D194V4, multiclass
[1] "Remove cluster labels:" "PURB MUTATED"          
clus
  PURB MUTATED PURB WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-AA9M     TCGA-S4-A8RO 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XN-A8T5 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PURB MUTATED        2      0      1      1      0
  PURB WILD-TYPE     24     20     27     24     20
D194V5, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PURB MUTATED        2      2      0
  PURB WILD-TYPE     46     51     18
D194V6, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PURB MUTATED        2      0      1      1      0
  PURB WILD-TYPE     35     31     16     20     13
D194V7, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PURB MUTATED        3      1      0
  PURB WILD-TYPE     68     26     21
D194V8, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            3             68
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PURB MUTATED        0      0      0      0      3      0      0
  PURB WILD-TYPE     18      8     10      8     33     25     12
D194V9, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PURB MUTATED        0      2      0      1      0      0
  PURB WILD-TYPE     17     30     13     31     16      7
D194V10, multiclass
        clus
vv       PURB MUTATED PURB WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(195) Variable = ABCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC2 MUTATED        0      3      3      0
  ABCC2 WILD-TYPE     19     50     27     24
D195V1, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC2 MUTATED        4      0      0      2
  ABCC2 WILD-TYPE     31     30     34     24
D195V2, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        2      1      1      1      0
  ABCC2 WILD-TYPE     27     17     12      8     13
D195V3, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        3      1      1      0      0
  ABCC2 WILD-TYPE     29     17     11     10     10
D195V4, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        0      0      2      1      2
  ABCC2 WILD-TYPE     26     20     26     24     18
D195V5, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        2      2      1
  ABCC2 WILD-TYPE     46     51     17
D195V6, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        2      2      0      1      0
  ABCC2 WILD-TYPE     35     29     17     20     13
D195V7, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        4      0      1
  ABCC2 WILD-TYPE     67     27     20
D195V8, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCC2 MUTATED        0      0      2      1      1      1      0
  ABCC2 WILD-TYPE     18      8      8      7     35     24     12
D195V9, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCC2 MUTATED        1      1      1      1      1      0
  ABCC2 WILD-TYPE     16     31     12     31     15      7
D195V10, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(196) Variable = KRT73 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT73 MUTATED        0      0      2      3
  KRT73 WILD-TYPE     19     53     28     21
D196V1, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT73 MUTATED        1      2      1      1
  KRT73 WILD-TYPE     34     28     33     25
D196V2, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT73 MUTATED        2      1      1      1      0
  KRT73 WILD-TYPE     27     17     12      8     13
D196V3, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT73 MUTATED        4      1      0      0      0
  KRT73 WILD-TYPE     28     17     12     10     10
D196V4, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT73 MUTATED        0      2      0      3      0
  KRT73 WILD-TYPE     26     18     28     22     20
D196V5, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT73 MUTATED        3      1      1
  KRT73 WILD-TYPE     45     52     17
D196V6, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT73 MUTATED        1      0      2      1      1
  KRT73 WILD-TYPE     36     31     15     20     12
D196V7, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT73 MUTATED        2      2      1
  KRT73 WILD-TYPE     69     25     20
D196V8, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT73 MUTATED        2      0      1      0      0      2      0
  KRT73 WILD-TYPE     16      8      9      8     36     23     12
D196V9, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT73 MUTATED        0      1      0      3      1      0
  KRT73 WILD-TYPE     17     31     13     29     15      7
D196V10, multiclass
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(197) Variable = SGOL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        0      4      1      2
  SGOL2 WILD-TYPE     19     49     29     22
D197V1, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        4      1      2      0
  SGOL2 WILD-TYPE     31     29     32     26
D197V2, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        1      0      0      1      0
  SGOL2 WILD-TYPE     28     18     13      8     13
D197V3, multiclass
[1] "Remove cluster labels:" "SGOL2 MUTATED"         
clus
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        2      0      0      0      0
  SGOL2 WILD-TYPE     30     18     12     10     10
D197V4, multiclass
[1] "Remove cluster labels:" "SGOL2 MUTATED"         
clus
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        2      1      2      2      0
  SGOL2 WILD-TYPE     24     19     26     23     20
D197V5, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        3      4      0
  SGOL2 WILD-TYPE     45     49     18
D197V6, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        3      0      2      1      1
  SGOL2 WILD-TYPE     34     31     15     20     12
D197V7, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        4      2      1
  SGOL2 WILD-TYPE     67     25     20
D197V8, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SGOL2 MUTATED        1      0      1      0      4      1      0
  SGOL2 WILD-TYPE     17      8      9      8     32     24     12
D197V9, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGOL2 MUTATED        2      1      0      3      1      0
  SGOL2 WILD-TYPE     15     31     13     29     15      7
D197V10, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(198) Variable = MAGEC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED        4      6      7      4
  MAGEC1 WILD-TYPE     15     47     23     20
D198V1, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              4               15
  CLUS_2              6               47
  CLUS_3              7               23
  CLUS_4              4               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED        4      5      7      5
  MAGEC1 WILD-TYPE     31     25     27     21
D198V2, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              5               25
  CLUS_3              7               27
  CLUS_4              5               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEC1 MUTATED        5      4      2      1      3
  MAGEC1 WILD-TYPE     24     14     11      8     10
D198V3, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              5               24
  CLUS_2              4               14
  CLUS_3              2               11
  CLUS_4              1                8
  CLUS_5              3               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEC1 MUTATED        6      4      1      2      2
  MAGEC1 WILD-TYPE     26     14     11      8      8
D198V4, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              6               26
  CLUS_2              4               14
  CLUS_3              1               11
  CLUS_4              2                8
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEC1 MUTATED        6      2      3      6      4
  MAGEC1 WILD-TYPE     20     18     25     19     16
D198V5, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              6               20
  CLUS_2              2               18
  CLUS_3              3               25
  CLUS_4              6               19
  CLUS_5              4               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEC1 MUTATED        8      9      4
  MAGEC1 WILD-TYPE     40     44     14
D198V6, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              8               40
  CLUS_2              9               44
  CLUS_3              4               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEC1 MUTATED        5      6      5      3      2
  MAGEC1 WILD-TYPE     32     25     12     18     11
D198V7, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              6               25
  CLUS_3              5               12
  CLUS_4              3               18
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEC1 MUTATED       13      6      2
  MAGEC1 WILD-TYPE     58     21     19
D198V8, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1             13               58
  CLUS_2              6               21
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGEC1 MUTATED        3      0      2      2      7      3      4
  MAGEC1 WILD-TYPE     15      8      8      6     29     22      8
D198V9, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              2                6
  CLUS_5              7               29
  CLUS_6              3               22
  CLUS_7              4                8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAGEC1 MUTATED        4      5      4      6      1      1
  MAGEC1 WILD-TYPE     13     27      9     26     15      6
D198V10, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              4               13
  CLUS_2              5               27
  CLUS_3              4                9
  CLUS_4              6               26
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(199) Variable = ZNF609 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF609 MUTATED        0      2      2      0
  ZNF609 WILD-TYPE     19     51     28     24
D199V1, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF609 MUTATED        2      2      0      0
  ZNF609 WILD-TYPE     33     28     34     26
D199V2, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF609 MUTATED        0      0      1      1      0
  ZNF609 WILD-TYPE     29     18     12      8     13
D199V3, multiclass
[1] "Remove cluster labels:" "ZNF609 MUTATED"        
clus
  ZNF609 MUTATED ZNF609 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABR 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF609 MUTATED        1      0      1      0      0
  ZNF609 WILD-TYPE     31     18     11     10     10
D199V4, multiclass
[1] "Remove cluster labels:" "ZNF609 MUTATED"        
clus
  ZNF609 MUTATED ZNF609 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABR 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" "ZNF609 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF609 MUTATED        0      2      1      1      0
  ZNF609 WILD-TYPE     26     18     27     24     20
D199V5, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF609 MUTATED        2      0      2
  ZNF609 WILD-TYPE     46     53     16
D199V6, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              0               53
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF609 MUTATED        1      0      0      2      1
  ZNF609 WILD-TYPE     36     31     17     19     12
D199V7, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF609 MUTATED        2      1      1
  ZNF609 WILD-TYPE     69     26     20
D199V8, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF609 MUTATED        0      0      2      0      0      0      2
  ZNF609 WILD-TYPE     18      8      8      8     36     25     10
D199V9, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF609 MUTATED        1      0      0      1      0      2
  ZNF609 WILD-TYPE     16     32     13     31     16      5
D199V10, multiclass
        clus
vv       ZNF609 MUTATED ZNF609 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              2                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(200) Variable = ATP4A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP4A MUTATED        3      4      3      0
  ATP4A WILD-TYPE     16     49     27     24
D200V1, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             3              16
  CLUS_2             4              49
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP4A MUTATED        2      4      4      0
  ATP4A WILD-TYPE     33     26     30     26
D200V2, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             2              33
  CLUS_2             4              26
  CLUS_3             4              30
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP4A MUTATED        2      1      0      1      2
  ATP4A WILD-TYPE     27     17     13      8     11
D200V3, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP4A MUTATED        3      1      1      0      1
  ATP4A WILD-TYPE     29     17     11     10      9
D200V4, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP4A MUTATED        1      1      3      4      1
  ATP4A WILD-TYPE     25     19     25     21     19
D200V5, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             4              21
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATP4A MUTATED        5      4      1
  ATP4A WILD-TYPE     43     49     17
D200V6, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             5              43
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP4A MUTATED        3      2      2      3      0
  ATP4A WILD-TYPE     34     29     15     18     13
D200V7, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             2              15
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATP4A MUTATED        6      3      1
  ATP4A WILD-TYPE     65     24     20
D200V8, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             6              65
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP4A MUTATED        1      1      2      1      2      1      2
  ATP4A WILD-TYPE     17      7      8      7     34     24     10
D200V9, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP4A MUTATED        1      3      1      4      0      1
  ATP4A WILD-TYPE     16     29     12     28     16      6
D200V10, multiclass
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             4              28
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(201) Variable = TRPV2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        0      3      2      2
  TRPV2 WILD-TYPE     19     50     28     22
D201V1, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        2      0      4      1
  TRPV2 WILD-TYPE     33     30     30     25
D201V2, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             4              30
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPV2 MUTATED        2      1      1      1      0
  TRPV2 WILD-TYPE     27     17     12      8     13
D201V3, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPV2 MUTATED        2      1      0      1      1
  TRPV2 WILD-TYPE     30     17     12      9      9
D201V4, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPV2 MUTATED        3      0      2      1      1
  TRPV2 WILD-TYPE     23     20     26     24     19
D201V5, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        1      6      0
  TRPV2 WILD-TYPE     47     47     18
D201V6, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             6              47
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPV2 MUTATED        3      1      0      3      0
  TRPV2 WILD-TYPE     34     30     17     18     13
D201V7, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        7      0      0
  TRPV2 WILD-TYPE     64     27     21
D201V8, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPV2 MUTATED        0      0      2      0      4      1      0
  TRPV2 WILD-TYPE     18      8      8      8     32     24     12
D201V9, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRPV2 MUTATED        2      2      1      1      1      0
  TRPV2 WILD-TYPE     15     30     12     31     15      7
D201V10, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(202) Variable = N4BP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED        2      1      1      2
  N4BP2 WILD-TYPE     17     52     29     22
D202V1, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED        2      1      2      1
  N4BP2 WILD-TYPE     33     29     32     25
D202V2, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  N4BP2 MUTATED        3      0      0      1      0
  N4BP2 WILD-TYPE     26     18     13      8     13
D202V3, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  N4BP2 MUTATED        4      0      0      0      0
  N4BP2 WILD-TYPE     28     18     12     10     10
D202V4, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  N4BP2 MUTATED        3      0      0      2      1
  N4BP2 WILD-TYPE     23     20     28     23     19
D202V5, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  N4BP2 MUTATED        3      2      1
  N4BP2 WILD-TYPE     45     51     17
D202V6, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  N4BP2 MUTATED        0      0      2      2      2
  N4BP2 WILD-TYPE     37     31     15     19     11
D202V7, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  N4BP2 MUTATED        4      1      1
  N4BP2 WILD-TYPE     67     26     20
D202V8, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  N4BP2 MUTATED        1      0      2      1      1      0      1
  N4BP2 WILD-TYPE     17      8      8      7     35     25     11
D202V9, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  N4BP2 MUTATED        3      0      0      2      1      0
  N4BP2 WILD-TYPE     14     32     13     30     15      7
D202V10, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(203) Variable = HMMR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMMR MUTATED        1      3      1      1
  HMMR WILD-TYPE     18     50     29     23
D203V1, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            1             18
  CLUS_2            3             50
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMMR MUTATED        5      0      1      0
  HMMR WILD-TYPE     30     30     33     26
D203V2, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            5             30
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMMR MUTATED        1      1      0      1      1
  HMMR WILD-TYPE     28     17     13      8     12
D203V3, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMMR MUTATED        1      1      0      1      1
  HMMR WILD-TYPE     31     17     12      9      9
D203V4, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMMR MUTATED        2      0      2      1      1
  HMMR WILD-TYPE     24     20     26     24     19
D203V5, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HMMR MUTATED        2      4      0
  HMMR WILD-TYPE     46     49     18
D203V6, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            2             46
  CLUS_2            4             49
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMMR MUTATED        2      1      0      3      0
  HMMR WILD-TYPE     35     30     17     18     13
D203V7, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            3             18
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HMMR MUTATED        6      0      0
  HMMR WILD-TYPE     65     27     21
D203V8, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            6             65
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HMMR MUTATED        0      0      1      1      3      1      0
  HMMR WILD-TYPE     18      8      9      7     33     24     12
D203V9, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HMMR MUTATED        0      3      2      1      0      0
  HMMR WILD-TYPE     17     29     11     31     16      7
D203V10, multiclass
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            2             11
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(204) Variable = CSNK1G3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G3 MUTATED        1      2      1      1
  CSNK1G3 WILD-TYPE     18     51     29     23
D204V1, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G3 MUTATED        2      2      0      0
  CSNK1G3 WILD-TYPE     33     28     34     26
D204V2, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        1      2      1      0      0
  CSNK1G3 WILD-TYPE     28     16     12      9     13
D204V3, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               2                16
  CLUS_3               1                12
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        1      2      1      0      0
  CSNK1G3 WILD-TYPE     31     16     11     10     10
D204V4, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               2                16
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        1      1      1      1      0
  CSNK1G3 WILD-TYPE     25     19     27     24     20
D204V5, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G3 MUTATED        2      1      1
  CSNK1G3 WILD-TYPE     46     52     17
D204V6, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        2      1      0      1      0
  CSNK1G3 WILD-TYPE     35     30     17     20     13
D204V7, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G3 MUTATED        2      1      1
  CSNK1G3 WILD-TYPE     69     26     20
D204V8, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSNK1G3 MUTATED        0      0      1      1      2      0      0
  CSNK1G3 WILD-TYPE     18      8      9      7     34     25     12
D204V9, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK1G3 MUTATED        1      1      0      1      0      1
  CSNK1G3 WILD-TYPE     16     31     13     31     16      6
D204V10, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(205) Variable = ATP13A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A3 MUTATED        0      1      3      1
  ATP13A3 WILD-TYPE     19     52     27     23
D205V1, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A3 MUTATED        0      1      2      2
  ATP13A3 WILD-TYPE     35     29     32     24
D205V2, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                35
  CLUS_2               1                29
  CLUS_3               2                32
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP13A3 MUTATED        2      2      1      0      0
  ATP13A3 WILD-TYPE     27     16     12      9     13
D205V3, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               2                16
  CLUS_3               1                12
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP13A3 MUTATED        2      2      0      0      1
  ATP13A3 WILD-TYPE     30     16     12     10      9
D205V4, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               2                16
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP13A3 MUTATED        0      1      1      1      2
  ATP13A3 WILD-TYPE     26     19     27     24     18
D205V5, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        1      3      1
  ATP13A3 WILD-TYPE     47     50     17
D205V6, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               3                50
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP13A3 MUTATED        1      3      1      0      0
  ATP13A3 WILD-TYPE     36     28     16     21     13
D205V7, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               3                28
  CLUS_3               1                16
  CLUS_4               0                21
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        3      1      1
  ATP13A3 WILD-TYPE     68     26     20
D205V8, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP13A3 MUTATED        1      0      0      0      0      4      0
  ATP13A3 WILD-TYPE     17      8     10      8     36     21     12
D205V9, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               4                21
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP13A3 MUTATED        0      2      0      1      2      0
  ATP13A3 WILD-TYPE     17     30     13     31     14      7
D205V10, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               2                14
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(206) Variable = ZNF626 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF626 MUTATED        1      5      2      2
  ZNF626 WILD-TYPE     18     48     28     22
D206V1, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              5               48
  CLUS_3              2               28
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF626 MUTATED        5      4      0      1
  ZNF626 WILD-TYPE     30     26     34     25
D206V2, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              5               30
  CLUS_2              4               26
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF626 MUTATED        2      0      1      2      1
  ZNF626 WILD-TYPE     27     18     12      7     12
D206V3, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF626 MUTATED        4      0      1      1      0
  ZNF626 WILD-TYPE     28     18     11      9     10
D206V4, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF626 MUTATED        1      2      2      5      0
  ZNF626 WILD-TYPE     25     18     26     20     20
D206V5, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              2               26
  CLUS_4              5               20
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF626 MUTATED        5      4      1
  ZNF626 WILD-TYPE     43     49     17
D206V6, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              5               43
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF626 MUTATED        1      2      2      3      2
  ZNF626 WILD-TYPE     36     29     15     18     11
D206V7, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              2               29
  CLUS_3              2               15
  CLUS_4              3               18
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF626 MUTATED        3      4      3
  ZNF626 WILD-TYPE     68     23     18
D206V8, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              4               23
  CLUS_3              3               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF626 MUTATED        1      2      1      0      2      2      2
  ZNF626 WILD-TYPE     17      6      9      8     34     23     10
D206V9, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              2                6
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF626 MUTATED        1      0      1      6      1      1
  ZNF626 WILD-TYPE     16     32     12     26     15      6
D206V10, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              6               26
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(207) Variable = LIMD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMD1 MUTATED        1      4      2      1
  LIMD1 WILD-TYPE     18     49     28     23
D207V1, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMD1 MUTATED        5      0      3      0
  LIMD1 WILD-TYPE     30     30     31     26
D207V2, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMD1 MUTATED        2      2      0      2      1
  LIMD1 WILD-TYPE     27     16     13      7     12
D207V3, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMD1 MUTATED        4      1      0      1      1
  LIMD1 WILD-TYPE     28     17     12      9      9
D207V4, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMD1 MUTATED        3      0      2      3      0
  LIMD1 WILD-TYPE     23     20     26     22     20
D207V5, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LIMD1 MUTATED        4      4      0
  LIMD1 WILD-TYPE     44     49     18
D207V6, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMD1 MUTATED        4      1      1      2      0
  LIMD1 WILD-TYPE     33     30     16     19     13
D207V7, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LIMD1 MUTATED        8      0      0
  LIMD1 WILD-TYPE     63     27     21
D207V8, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LIMD1 MUTATED        1      2      1      0      3      1      0
  LIMD1 WILD-TYPE     17      6      9      8     33     24     12
D207V9, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LIMD1 MUTATED        0      5      0      3      0      0
  LIMD1 WILD-TYPE     17     27     13     29     16      7
D207V10, multiclass
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             5              27
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(208) Variable = ESCO2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        0      1      3      0
  ESCO2 WILD-TYPE     19     52     27     24
D208V1, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        0      1      0      3
  ESCO2 WILD-TYPE     35     29     34     23
D208V2, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESCO2 MUTATED        0      1      1      0      1
  ESCO2 WILD-TYPE     29     17     12      9     12
D208V3, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESCO2 MUTATED        0      2      0      0      1
  ESCO2 WILD-TYPE     32     16     12     10      9
D208V4, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESCO2 MUTATED        0      2      0      0      2
  ESCO2 WILD-TYPE     26     18     28     25     18
D208V5, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             0              28
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO2 MUTATED        0      3      1
  ESCO2 WILD-TYPE     48     50     17
D208V6, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESCO2 MUTATED        0      2      0      0      2
  ESCO2 WILD-TYPE     37     29     17     21     11
D208V7, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO2 MUTATED        3      0      1
  ESCO2 WILD-TYPE     68     27     20
D208V8, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESCO2 MUTATED        0      1      0      2      0      1      0
  ESCO2 WILD-TYPE     18      7     10      6     36     24     12
D208V9, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             2               6
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ESCO2 MUTATED        1      0      2      0      1      0
  ESCO2 WILD-TYPE     16     32     11     32     15      7
D208V10, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             2              11
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(209) Variable = MRPS5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        1      1      1      1
  MRPS5 WILD-TYPE     18     52     29     23
D209V1, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        1      0      2      1
  MRPS5 WILD-TYPE     34     30     32     25
D209V2, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        1      1      0      1      0
  MRPS5 WILD-TYPE     28     17     13      8     13
D209V3, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        2      1      0      0      0
  MRPS5 WILD-TYPE     30     17     12     10     10
D209V4, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        0      1      2      1      0
  MRPS5 WILD-TYPE     26     19     26     24     20
D209V5, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        1      2      1
  MRPS5 WILD-TYPE     47     51     17
D209V6, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        0      2      0      1      1
  MRPS5 WILD-TYPE     37     29     17     20     12
D209V7, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        3      0      1
  MRPS5 WILD-TYPE     68     27     20
D209V8, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRPS5 MUTATED        0      1      1      0      0      2      0
  MRPS5 WILD-TYPE     18      7      9      8     36     23     12
D209V9, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MRPS5 MUTATED        0      2      0      1      1      0
  MRPS5 WILD-TYPE     17     30     13     31     15      7
D209V10, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(210) Variable = TFIP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFIP11 MUTATED        1      2      3      0
  TFIP11 WILD-TYPE     18     51     27     24
D210V1, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFIP11 MUTATED        3      2      0      1
  TFIP11 WILD-TYPE     32     28     34     25
D210V2, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFIP11 MUTATED        0      1      3      2      0
  TFIP11 WILD-TYPE     29     17     10      7     13
D210V3, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              3               10
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFIP11 MUTATED        1      1      2      1      1
  TFIP11 WILD-TYPE     31     17     10      9      9
D210V4, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              2               10
  CLUS_4              1                9
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFIP11 MUTATED        1      0      1      2      1
  TFIP11 WILD-TYPE     25     20     27     23     19
D210V5, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TFIP11 MUTATED        4      1      0
  TFIP11 WILD-TYPE     44     52     18
D210V6, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFIP11 MUTATED        1      1      1      2      0
  TFIP11 WILD-TYPE     36     30     16     19     13
D210V7, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TFIP11 MUTATED        3      2      0
  TFIP11 WILD-TYPE     68     25     21
D210V8, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TFIP11 MUTATED        2      0      2      0      0      1      0
  TFIP11 WILD-TYPE     16      8      8      8     36     24     12
D210V9, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TFIP11 MUTATED        1      0      0      3      1      0
  TFIP11 WILD-TYPE     16     32     13     29     15      7
D210V10, multiclass
        clus
vv       TFIP11 MUTATED TFIP11 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(211) Variable = PVRL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL1 MUTATED        0      5      2      1
  PVRL1 WILD-TYPE     19     48     28     23
D211V1, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             5              48
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL1 MUTATED        4      2      1      1
  PVRL1 WILD-TYPE     31     28     33     25
D211V2, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL1 MUTATED        1      2      1      2      0
  PVRL1 WILD-TYPE     28     16     12      7     13
D211V3, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL1 MUTATED        2      2      1      1      0
  PVRL1 WILD-TYPE     30     16     11      9     10
D211V4, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL1 MUTATED        1      2      3      2      0
  PVRL1 WILD-TYPE     25     18     25     23     20
D211V5, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              18
  CLUS_3             3              25
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        3      4      1
  PVRL1 WILD-TYPE     45     49     17
D211V6, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL1 MUTATED        2      2      2      2      0
  PVRL1 WILD-TYPE     35     29     15     19     13
D211V7, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        5      2      1
  PVRL1 WILD-TYPE     66     25     20
D211V8, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PVRL1 MUTATED        2      2      2      0      1      0      1
  PVRL1 WILD-TYPE     16      6      8      8     35     25     11
D211V9, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2               6
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PVRL1 MUTATED        0      3      1      3      0      1
  PVRL1 WILD-TYPE     17     29     12     29     16      6
D211V10, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(212) Variable = DIAPH3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED        0      1      5      1
  DIAPH3 WILD-TYPE     19     52     25     23
D212V1, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              5               25
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED        4      1      0      2
  DIAPH3 WILD-TYPE     31     29     34     24
D212V2, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIAPH3 MUTATED        0      1      0      1      2
  DIAPH3 WILD-TYPE     29     17     13      8     11
D212V3, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIAPH3 MUTATED        3      0      1      0      0
  DIAPH3 WILD-TYPE     29     18     11     10     10
D212V4, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIAPH3 MUTATED        2      0      1      2      2
  DIAPH3 WILD-TYPE     24     20     27     23     18
D212V5, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH3 MUTATED        2      4      1
  DIAPH3 WILD-TYPE     46     49     17
D212V6, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIAPH3 MUTATED        2      2      1      2      0
  DIAPH3 WILD-TYPE     35     29     16     19     13
D212V7, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH3 MUTATED        6      1      0
  DIAPH3 WILD-TYPE     65     26     21
D212V8, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              6               65
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIAPH3 MUTATED        0      1      1      1      2      0      1
  DIAPH3 WILD-TYPE     18      7      9      7     34     25     11
D212V9, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DIAPH3 MUTATED        1      2      1      2      0      0
  DIAPH3 WILD-TYPE     16     30     12     30     16      7
D212V10, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(213) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3      2      2      1
  IRS4 WILD-TYPE     16     51     28     23
D213V1, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             16
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3      1      3      1
  IRS4 WILD-TYPE     32     29     31     25
D213V2, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            3             31
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        2      0      1      2      0
  IRS4 WILD-TYPE     27     18     12      7     13
D213V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        3      0      1      1      0
  IRS4 WILD-TYPE     29     18     11      9     10
D213V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        2      0      3      2      1
  IRS4 WILD-TYPE     24     20     25     23     19
D213V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            3             25
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        3      4      1
  IRS4 WILD-TYPE     45     49     17
D213V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            4             49
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        1      2      1      3      1
  IRS4 WILD-TYPE     36     29     16     18     12
D213V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            3             18
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        5      2      1
  IRS4 WILD-TYPE     66     25     20
D213V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        1      2      1      1      1      0      1
  IRS4 WILD-TYPE     17      6      9      7     35     25     11
D213V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2              6
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS4 MUTATED        1      2      0      3      1      0
  IRS4 WILD-TYPE     16     30     13     29     15      7
D213V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(214) Variable = USP4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP4 MUTATED        1      3      2      1
  USP4 WILD-TYPE     18     50     28     23
D214V1, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            3             50
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP4 MUTATED        3      1      2      1
  USP4 WILD-TYPE     32     29     32     25
D214V2, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP4 MUTATED        1      0      0      1      1
  USP4 WILD-TYPE     28     18     13      8     12
D214V3, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP4 MUTATED        2      0      1      0      0
  USP4 WILD-TYPE     30     18     11     10     10
D214V4, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP4 MUTATED        3      1      0      2      1
  USP4 WILD-TYPE     23     19     28     23     19
D214V5, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            1             19
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP4 MUTATED        3      3      1
  USP4 WILD-TYPE     45     50     17
D214V6, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP4 MUTATED        3      1      0      3      0
  USP4 WILD-TYPE     34     30     17     18     13
D214V7, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            3             18
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP4 MUTATED        5      1      1
  USP4 WILD-TYPE     66     26     20
D214V8, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP4 MUTATED        1      0      2      1      2      1      0
  USP4 WILD-TYPE     17      8      8      7     34     24     12
D214V9, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP4 MUTATED        1      1      1      3      0      1
  USP4 WILD-TYPE     16     31     12     29     16      6
D214V10, multiclass
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(215) Variable = TGFBR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        3      3      2      0
  TGFBR2 WILD-TYPE     16     50     28     24
D215V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               16
  CLUS_2              3               50
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        5      0      1      2
  TGFBR2 WILD-TYPE     30     30     33     24
D215V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5               30
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        1      2      0      1      2
  TGFBR2 WILD-TYPE     28     16     13      8     11
D215V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        3      3      0      0      0
  TGFBR2 WILD-TYPE     29     15     12     10     10
D215V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              3               15
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        3      1      1      1      2
  TGFBR2 WILD-TYPE     23     19     27     24     18
D215V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        3      4      1
  TGFBR2 WILD-TYPE     45     49     17
D215V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        3      2      0      2      1
  TGFBR2 WILD-TYPE     34     29     17     19     12
D215V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        7      0      1
  TGFBR2 WILD-TYPE     64     27     20
D215V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR2 MUTATED        1      0      1      1      2      2      1
  TGFBR2 WILD-TYPE     17      8      9      7     34     23     11
D215V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TGFBR2 MUTATED        3      2      1      1      1      0
  TGFBR2 WILD-TYPE     14     30     12     31     15      7
D215V10, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(216) Variable = ZMYND8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        1      2      2      3
  ZMYND8 WILD-TYPE     18     51     28     21
D216V1, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        5      1      2      0
  ZMYND8 WILD-TYPE     30     29     32     26
D216V2, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              5               30
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        2      1      0      1      1
  ZMYND8 WILD-TYPE     27     17     13      8     12
D216V3, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        2      2      0      1      0
  ZMYND8 WILD-TYPE     30     16     12      9     10
D216V4, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              2               16
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        4      0      1      2      1
  ZMYND8 WILD-TYPE     22     20     27     23     19
D216V5, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED        3      5      0
  ZMYND8 WILD-TYPE     45     48     18
D216V6, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              5               48
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        2      2      1      3      0
  ZMYND8 WILD-TYPE     35     29     16     18     13
D216V7, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              3               18
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED        6      2      0
  ZMYND8 WILD-TYPE     65     25     21
D216V8, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              6               65
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYND8 MUTATED        1      0      2      2      3      0      0
  ZMYND8 WILD-TYPE     17      8      8      6     33     25     12
D216V9, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              2                6
  CLUS_5              3               33
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYND8 MUTATED        2      1      2      3      0      0
  ZMYND8 WILD-TYPE     15     31     11     29     16      7
D216V10, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1               31
  CLUS_3              2               11
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(217) Variable = ATG2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED        1      5      3      0
  ATG2B WILD-TYPE     18     48     27     24
D217V1, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             1              18
  CLUS_2             5              48
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED        1      5      1      2
  ATG2B WILD-TYPE     34     25     33     24
D217V2, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             1              34
  CLUS_2             5              25
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG2B MUTATED        1      0      2      2      0
  ATG2B WILD-TYPE     28     18     11      7     13
D217V3, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG2B MUTATED        2      0      2      1      0
  ATG2B WILD-TYPE     30     18     10      9     10
D217V4, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG2B MUTATED        0      3      1      2      1
  ATG2B WILD-TYPE     26     17     27     23     19
D217V5, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              17
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG2B MUTATED        5      1      1
  ATG2B WILD-TYPE     43     52     17
D217V6, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             5              43
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG2B MUTATED        2      1      1      1      2
  ATG2B WILD-TYPE     35     30     16     20     11
D217V7, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG2B MUTATED        4      3      0
  ATG2B WILD-TYPE     67     24     21
D217V8, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             4              67
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATG2B MUTATED        2      1      1      0      1      1      1
  ATG2B WILD-TYPE     16      7      9      8     35     24     11
D217V9, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATG2B MUTATED        2      0      0      3      1      1
  ATG2B WILD-TYPE     15     32     13     29     15      6
D217V10, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             2              15
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(218) Variable = CDH10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED        3      4      5      1
  CDH10 WILD-TYPE     16     49     25     23
D218V1, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             4              49
  CLUS_3             5              25
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED        2      3      6      2
  CDH10 WILD-TYPE     33     27     28     24
D218V2, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              27
  CLUS_3             6              28
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH10 MUTATED        2      2      0      1      1
  CDH10 WILD-TYPE     27     16     13      8     12
D218V3, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH10 MUTATED        2      2      0      1      1
  CDH10 WILD-TYPE     30     16     12      9      9
D218V4, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH10 MUTATED        3      1      3      3      2
  CDH10 WILD-TYPE     23     19     25     22     18
D218V5, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH10 MUTATED        4      7      1
  CDH10 WILD-TYPE     44     46     17
D218V6, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             7              46
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH10 MUTATED        3      3      1      4      1
  CDH10 WILD-TYPE     34     28     16     17     12
D218V7, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             4              17
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH10 MUTATED        8      4      0
  CDH10 WILD-TYPE     63     23     21
D218V8, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             8              63
  CLUS_2             4              23
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH10 MUTATED        1      1      1      1      3      2      1
  CDH10 WILD-TYPE     17      7      9      7     33     23     11
D218V9, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             3              33
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH10 MUTATED        1      3      2      2      1      1
  CDH10 WILD-TYPE     16     29     11     30     15      6
D218V10, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(219) Variable = OXR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXR1 MUTATED        0      3      1      1
  OXR1 WILD-TYPE     19     50     29     23
D219V1, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXR1 MUTATED        0      1      3      1
  OXR1 WILD-TYPE     35     29     31     25
D219V2, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            1             29
  CLUS_3            3             31
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXR1 MUTATED        1      1      0      0      1
  OXR1 WILD-TYPE     28     17     13      9     12
D219V3, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            0              9
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXR1 MUTATED        1      1      0      0      1
  OXR1 WILD-TYPE     31     17     12     10      9
D219V4, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXR1 MUTATED        1      1      2      0      1
  OXR1 WILD-TYPE     25     19     26     25     19
D219V5, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            2             26
  CLUS_4            0             25
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        2      2      1
  OXR1 WILD-TYPE     46     51     17
D219V6, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXR1 MUTATED        1      2      0      2      0
  OXR1 WILD-TYPE     36     29     17     19     13
D219V7, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXR1 MUTATED        4      0      1
  OXR1 WILD-TYPE     67     27     20
D219V8, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OXR1 MUTATED        0      0      0      0      2      2      1
  OXR1 WILD-TYPE     18      8     10      8     34     23     11
D219V9, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OXR1 MUTATED        1      2      1      0      0      1
  OXR1 WILD-TYPE     16     30     12     32     16      6
D219V10, multiclass
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            1             12
  CLUS_4            0             32
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(220) Variable = SEC31A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED        1      3      1      1
  SEC31A WILD-TYPE     18     50     29     23
D220V1, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED        4      0      1      1
  SEC31A WILD-TYPE     31     30     33     25
D220V2, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              4               31
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC31A MUTATED        2      2      0      1      0
  SEC31A WILD-TYPE     27     16     13      8     13
D220V3, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              2               27
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC31A MUTATED        3      2      0      0      0
  SEC31A WILD-TYPE     29     16     12     10     10
D220V4, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              3               29
  CLUS_2              2               16
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC31A MUTATED        3      1      0      1      1
  SEC31A WILD-TYPE     23     19     28     24     19
D220V5, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              3               23
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC31A MUTATED        1      5      0
  SEC31A WILD-TYPE     47     48     18
D220V6, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              1               47
  CLUS_2              5               48
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC31A MUTATED        4      1      0      1      0
  SEC31A WILD-TYPE     33     30     17     20     13
D220V7, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              4               33
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC31A MUTATED        6      0      0
  SEC31A WILD-TYPE     65     27     21
D220V8, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              6               65
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEC31A MUTATED        0      0      1      1      2      2      0
  SEC31A WILD-TYPE     18      8      9      7     34     23     12
D220V9, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEC31A MUTATED        1      3      1      1      0      0
  SEC31A WILD-TYPE     16     29     12     31     16      7
D220V10, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              1               16
  CLUS_2              3               29
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(221) Variable = NDEL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDEL1 MUTATED        1      1      2      1
  NDEL1 WILD-TYPE     18     52     28     23
D221V1, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDEL1 MUTATED        0      1      1      3
  NDEL1 WILD-TYPE     35     29     33     23
D221V2, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDEL1 MUTATED        0      0      1      0      1
  NDEL1 WILD-TYPE     29     18     12      9     12
D221V3, multiclass
[1] "Remove cluster labels:" "NDEL1 MUTATED"         
clus
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABF 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUU 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDEL1 MUTATED        0      0      1      0      1
  NDEL1 WILD-TYPE     32     18     11     10      9
D221V4, multiclass
[1] "Remove cluster labels:" "NDEL1 MUTATED"         
clus
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABF 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABR 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUU 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDEL1 MUTATED        0      1      1      0      3
  NDEL1 WILD-TYPE     26     19     27     25     17
D221V5, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        1      2      2
  NDEL1 WILD-TYPE     47     51     16
D221V6, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDEL1 MUTATED        0      3      0      1      1
  NDEL1 WILD-TYPE     37     28     17     20     12
D221V7, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        2      0      3
  NDEL1 WILD-TYPE     69     27     18
D221V8, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NDEL1 MUTATED        0      1      0      1      0      2      1
  NDEL1 WILD-TYPE     18      7     10      7     36     23     11
D221V9, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NDEL1 MUTATED        1      0      0      0      3      1
  NDEL1 WILD-TYPE     16     32     13     32     13      6
D221V10, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             0              32
  CLUS_5             3              13
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(222) Variable = SHROOM4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED        0      4      4      2
  SHROOM4 WILD-TYPE     19     49     26     22
D222V1, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               4                49
  CLUS_3               4                26
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED        3      1      3      3
  SHROOM4 WILD-TYPE     32     29     31     23
D222V2, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               3                31
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHROOM4 MUTATED        2      1      2      1      1
  SHROOM4 WILD-TYPE     27     17     11      8     12
D222V3, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               2                11
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHROOM4 MUTATED        3      1      1      0      2
  SHROOM4 WILD-TYPE     29     17     11     10      8
D222V4, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               2                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHROOM4 MUTATED        2      1      2      2      3
  SHROOM4 WILD-TYPE     24     19     26     23     17
D222V5, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               2                26
  CLUS_4               2                23
  CLUS_5               3                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        3      4      3
  SHROOM4 WILD-TYPE     45     49     15
D222V6, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               4                49
  CLUS_3               3                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHROOM4 MUTATED        3      4      1      1      1
  SHROOM4 WILD-TYPE     34     27     16     20     12
D222V7, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               4                27
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        6      1      3
  SHROOM4 WILD-TYPE     65     26     18
D222V8, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               6                65
  CLUS_2               1                26
  CLUS_3               3                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SHROOM4 MUTATED        1      0      1      0      3      5      0
  SHROOM4 WILD-TYPE     17      8      9      8     33     20     12
D222V9, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               5                20
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SHROOM4 MUTATED        1      2      1      3      3      0
  SHROOM4 WILD-TYPE     16     30     12     29     13      7
D222V10, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               3                29
  CLUS_5               3                13
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(223) Variable = HIRA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIRA MUTATED        1      0      2      2
  HIRA WILD-TYPE     18     53     28     22
D223V1, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            1             18
  CLUS_2            0             53
  CLUS_3            2             28
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIRA MUTATED        1      0      2      2
  HIRA WILD-TYPE     34     30     32     24
D223V2, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            1             34
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIRA MUTATED        2      1      0      0      1
  HIRA WILD-TYPE     27     17     13      9     12
D223V3, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            2             27
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            0              9
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIRA MUTATED        3      0      0      0      1
  HIRA WILD-TYPE     29     18     12     10      9
D223V4, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIRA MUTATED        2      1      1      0      1
  HIRA WILD-TYPE     24     19     27     25     19
D223V5, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            0             25
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HIRA MUTATED        1      2      2
  HIRA WILD-TYPE     47     51     16
D223V6, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIRA MUTATED        2      1      1      0      1
  HIRA WILD-TYPE     35     30     16     21     12
D223V7, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            0             21
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HIRA MUTATED        3      0      2
  HIRA WILD-TYPE     68     27     19
D223V8, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIRA MUTATED        0      1      0      0      2      1      1
  HIRA WILD-TYPE     18      7     10      8     34     24     11
D223V9, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIRA MUTATED        2      2      0      0      1      0
  HIRA WILD-TYPE     15     30     13     32     15      7
D223V10, multiclass
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  CLUS_1            2             15
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            0             32
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(224) Variable = XRCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC2 MUTATED        2      2      0      0
  XRCC2 WILD-TYPE     17     51     30     24
D224V1, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             2              51
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC2 MUTATED        1      1      2      0
  XRCC2 WILD-TYPE     34     29     32     26
D224V2, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        2      0      0      0      0
  XRCC2 WILD-TYPE     27     18     13      9     13
D224V3, multiclass
[1] "Remove cluster labels:" "XRCC2 MUTATED"         
clus
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A8F3 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        2      0      0      0      0
  XRCC2 WILD-TYPE     30     18     12     10     10
D224V4, multiclass
[1] "Remove cluster labels:" "XRCC2 MUTATED"         
clus
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A8F3 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        0      0      2      2      0
  XRCC2 WILD-TYPE     26     20     26     23     20
D224V5, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC2 MUTATED        2      2      0
  XRCC2 WILD-TYPE     46     51     18
D224V6, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        2      0      2      0      0
  XRCC2 WILD-TYPE     35     31     15     21     13
D224V7, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC2 MUTATED        2      2      0
  XRCC2 WILD-TYPE     69     25     21
D224V8, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XRCC2 MUTATED        1      1      0      0      1      0      1
  XRCC2 WILD-TYPE     17      7     10      8     35     25     11
D224V9, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XRCC2 MUTATED        1      1      0      2      0      0
  XRCC2 WILD-TYPE     16     31     13     30     16      7
D224V10, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(225) Variable = APEX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APEX1 MUTATED        1      2      1      0
  APEX1 WILD-TYPE     18     51     29     24
D225V1, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APEX1 MUTATED        1      1      2      0
  APEX1 WILD-TYPE     34     29     32     26
D225V2, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APEX1 MUTATED        0      0      0      0      1
  APEX1 WILD-TYPE     29     18     13      9     12
D225V3, multiclass
[1] "Remove cluster labels:" "APEX1 MUTATED"         
clus
  APEX1 MUTATED APEX1 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-US-A77G      TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-Z5-AAPL 
"APEX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APEX1 MUTATED        0      0      1      0      0
  APEX1 WILD-TYPE     32     18     11     10     10
D225V4, multiclass
[1] "Remove cluster labels:" "APEX1 MUTATED"         
clus
  APEX1 MUTATED APEX1 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-US-A77G      TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" "APEX1 WILD-TYPE" 
     TCGA-Z5-AAPL 
"APEX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APEX1 MUTATED        0      1      2      1      0
  APEX1 WILD-TYPE     26     19     26     24     20
D225V5, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APEX1 MUTATED        2      1      1
  APEX1 WILD-TYPE     46     52     17
D225V6, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APEX1 MUTATED        2      1      0      0      1
  APEX1 WILD-TYPE     35     30     17     21     12
D225V7, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APEX1 MUTATED        3      1      0
  APEX1 WILD-TYPE     68     26     21
D225V8, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APEX1 MUTATED        0      0      0      0      1      2      1
  APEX1 WILD-TYPE     18      8     10      8     35     23     11
D225V9, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APEX1 MUTATED        0      2      0      1      0      1
  APEX1 WILD-TYPE     17     30     13     31     16      6
D225V10, multiclass
        clus
vv       APEX1 MUTATED APEX1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(226) Variable = TMEM90B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM90B MUTATED        1      1      2      2
  TMEM90B WILD-TYPE     18     52     28     22
D226V1, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM90B MUTATED        3      1      1      1
  TMEM90B WILD-TYPE     32     29     33     25
D226V2, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM90B MUTATED        2      1      0      1      1
  TMEM90B WILD-TYPE     27     17     13      8     12
D226V3, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM90B MUTATED        3      2      0      0      0
  TMEM90B WILD-TYPE     29     16     12     10     10
D226V4, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               3                29
  CLUS_2               2                16
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM90B MUTATED        1      1      2      1      1
  TMEM90B WILD-TYPE     25     19     26     24     19
D226V5, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               2                26
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM90B MUTATED        1      4      1
  TMEM90B WILD-TYPE     47     49     17
D226V6, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1                47
  CLUS_2               4                49
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM90B MUTATED        3      1      0      2      0
  TMEM90B WILD-TYPE     34     30     17     19     13
D226V7, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               3                34
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM90B MUTATED        5      0      1
  TMEM90B WILD-TYPE     66     27     20
D226V8, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               5                66
  CLUS_2               0                27
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM90B MUTATED        0      0      1      1      3      0      1
  TMEM90B WILD-TYPE     18      8      9      7     33     25     11
D226V9, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM90B MUTATED        1      2      1      1      0      1
  TMEM90B WILD-TYPE     16     30     12     31     16      6
D226V10, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(227) Variable = RAB11FIP1 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB11FIP1 MUTATED        3      2      2      0
  RAB11FIP1 WILD-TYPE     16     51     28     24
D227V1, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 3                  16
  CLUS_2                 2                  51
  CLUS_3                 2                  28
  CLUS_4                 0                  24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB11FIP1 MUTATED        2      1      3      1
  RAB11FIP1 WILD-TYPE     33     29     31     25
D227V2, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 2                  33
  CLUS_2                 1                  29
  CLUS_3                 3                  31
  CLUS_4                 1                  25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP1 MUTATED        2      0      0      1      2
  RAB11FIP1 WILD-TYPE     27     18     13      8     11
D227V3, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 2                  27
  CLUS_2                 0                  18
  CLUS_3                 0                  13
  CLUS_4                 1                   8
  CLUS_5                 2                  11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP1 MUTATED        3      1      1      0      0
  RAB11FIP1 WILD-TYPE     29     17     11     10     10
D227V4, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 3                  29
  CLUS_2                 1                  17
  CLUS_3                 1                  11
  CLUS_4                 0                  10
  CLUS_5                 0                  10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP1 MUTATED        3      0      1      2      1
  RAB11FIP1 WILD-TYPE     23     20     27     23     19
D227V5, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 3                  23
  CLUS_2                 0                  20
  CLUS_3                 1                  27
  CLUS_4                 2                  23
  CLUS_5                 1                  19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP1 MUTATED        3      4      0
  RAB11FIP1 WILD-TYPE     45     49     18
D227V6, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 3                  45
  CLUS_2                 4                  49
  CLUS_3                 0                  18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP1 MUTATED        3      1      1      2      0
  RAB11FIP1 WILD-TYPE     34     30     16     19     13
D227V7, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 3                  34
  CLUS_2                 1                  30
  CLUS_3                 1                  16
  CLUS_4                 2                  19
  CLUS_5                 0                  13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP1 MUTATED        6      1      0
  RAB11FIP1 WILD-TYPE     65     26     21
D227V8, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 6                  65
  CLUS_2                 1                  26
  CLUS_3                 0                  21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB11FIP1 MUTATED        0      0      1      1      4      0      1
  RAB11FIP1 WILD-TYPE     18      8      9      7     32     25     11
D227V9, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 0                  18
  CLUS_2                 0                   8
  CLUS_3                 1                   9
  CLUS_4                 1                   7
  CLUS_5                 4                  32
  CLUS_6                 0                  25
  CLUS_7                 1                  11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAB11FIP1 MUTATED        2      2      1      2      0      0
  RAB11FIP1 WILD-TYPE     15     30     12     30     16      7
D227V10, multiclass
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  CLUS_1                 2                  15
  CLUS_2                 2                  30
  CLUS_3                 1                  12
  CLUS_4                 2                  30
  CLUS_5                 0                  16
  CLUS_6                 0                   7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(228) Variable = MPP6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPP6 MUTATED        1      0      3      1
  MPP6 WILD-TYPE     18     53     27     23
D228V1, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            0             53
  CLUS_3            3             27
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPP6 MUTATED        2      1      1      1
  MPP6 WILD-TYPE     33     29     33     25
D228V2, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPP6 MUTATED        0      0      0      1      2
  MPP6 WILD-TYPE     29     18     13      8     11
D228V3, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPP6 MUTATED        1      0      1      0      1
  MPP6 WILD-TYPE     31     18     11     10      9
D228V4, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPP6 MUTATED        0      0      0      3      1
  MPP6 WILD-TYPE     26     20     28     22     19
D228V5, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            3             22
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MPP6 MUTATED        4      0      0
  MPP6 WILD-TYPE     44     53     18
D228V6, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            0             53
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPP6 MUTATED        1      2      0      1      0
  MPP6 WILD-TYPE     36     29     17     20     13
D228V7, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MPP6 MUTATED        2      2      0
  MPP6 WILD-TYPE     69     25     21
D228V8, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MPP6 MUTATED        0      0      1      0      0      3      0
  MPP6 WILD-TYPE     18      8      9      8     36     22     12
D228V9, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            3             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MPP6 MUTATED        0      0      0      3      1      0
  MPP6 WILD-TYPE     17     32     13     29     15      7
D228V10, multiclass
        clus
vv       MPP6 MUTATED MPP6 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(229) Variable = KIAA2018 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED        1      4      2      1
  KIAA2018 WILD-TYPE     18     49     28     23
D229V1, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                4                 49
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED        3      1      2      2
  KIAA2018 WILD-TYPE     32     29     32     24
D229V2, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                1                 29
  CLUS_3                2                 32
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA2018 MUTATED        1      2      1      1      0
  KIAA2018 WILD-TYPE     28     16     12      8     13
D229V3, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                2                 16
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA2018 MUTATED        2      2      1      0      0
  KIAA2018 WILD-TYPE     30     16     11     10     10
D229V4, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                2                 16
  CLUS_3                1                 11
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA2018 MUTATED        3      0      1      3      1
  KIAA2018 WILD-TYPE     23     20     27     22     19
D229V5, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                3                 22
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2018 MUTATED        4      3      1
  KIAA2018 WILD-TYPE     44     50     17
D229V6, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                3                 50
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA2018 MUTATED        3      2      2      1      0
  KIAA2018 WILD-TYPE     34     29     15     20     13
D229V7, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                2                 29
  CLUS_3                2                 15
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2018 MUTATED        5      2      1
  KIAA2018 WILD-TYPE     66     25     20
D229V8, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                5                 66
  CLUS_2                2                 25
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA2018 MUTATED        1      0      2      0      3      2      0
  KIAA2018 WILD-TYPE     17      8      8      8     33     23     12
D229V9, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                2                  8
  CLUS_4                0                  8
  CLUS_5                3                 33
  CLUS_6                2                 23
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA2018 MUTATED        1      3      0      3      1      0
  KIAA2018 WILD-TYPE     16     29     13     29     15      7
D229V10, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                3                 29
  CLUS_3                0                 13
  CLUS_4                3                 29
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(230) Variable = CEP72 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP72 MUTATED        0      4      1      1
  CEP72 WILD-TYPE     19     49     29     23
D230V1, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP72 MUTATED        3      0      2      1
  CEP72 WILD-TYPE     32     30     32     25
D230V2, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP72 MUTATED        2      2      0      1      0
  CEP72 WILD-TYPE     27     16     13      8     13
D230V3, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP72 MUTATED        3      2      0      0      0
  CEP72 WILD-TYPE     29     16     12     10     10
D230V4, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP72 MUTATED        3      0      1      2      0
  CEP72 WILD-TYPE     23     20     27     23     20
D230V5, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEP72 MUTATED        4      2      0
  CEP72 WILD-TYPE     44     51     18
D230V6, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP72 MUTATED        2      1      2      1      0
  CEP72 WILD-TYPE     35     30     15     20     13
D230V7, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEP72 MUTATED        5      1      0
  CEP72 WILD-TYPE     66     26     21
D230V8, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEP72 MUTATED        1      0      2      0      2      1      0
  CEP72 WILD-TYPE     17      8      8      8     34     24     12
D230V9, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP72 MUTATED        1      3      0      2      0      0
  CEP72 WILD-TYPE     16     29     13     30     16      7
D230V10, multiclass
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(231) Variable = AJAP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AJAP1 MUTATED        2      2      1      3
  AJAP1 WILD-TYPE     17     51     29     21
D231V1, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AJAP1 MUTATED        3      1      3      1
  AJAP1 WILD-TYPE     32     29     31     25
D231V2, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AJAP1 MUTATED        1      0      1      2      1
  AJAP1 WILD-TYPE     28     18     12      7     12
D231V3, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AJAP1 MUTATED        4      0      0      0      1
  AJAP1 WILD-TYPE     28     18     12     10      9
D231V4, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AJAP1 MUTATED        1      1      3      1      2
  AJAP1 WILD-TYPE     25     19     25     24     18
D231V5, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AJAP1 MUTATED        4      4      0
  AJAP1 WILD-TYPE     44     49     18
D231V6, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AJAP1 MUTATED        2      3      0      1      2
  AJAP1 WILD-TYPE     35     28     17     20     11
D231V7, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AJAP1 MUTATED        6      1      1
  AJAP1 WILD-TYPE     65     26     20
D231V8, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AJAP1 MUTATED        1      0      1      2      2      1      1
  AJAP1 WILD-TYPE     17      8      9      6     34     24     11
D231V9, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AJAP1 MUTATED        1      2      2      3      0      0
  AJAP1 WILD-TYPE     16     30     11     29     16      7
D231V10, multiclass
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(232) Variable = GABBR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABBR1 MUTATED        1      4      5      0
  GABBR1 WILD-TYPE     18     49     25     24
D232V1, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              4               49
  CLUS_3              5               25
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABBR1 MUTATED        3      3      2      2
  GABBR1 WILD-TYPE     32     27     32     24
D232V2, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              3               27
  CLUS_3              2               32
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABBR1 MUTATED        3      1      1      1      1
  GABBR1 WILD-TYPE     26     17     12      8     12
D232V3, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABBR1 MUTATED        3      2      1      1      0
  GABBR1 WILD-TYPE     29     16     11      9     10
D232V4, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABBR1 MUTATED        3      2      1      2      2
  GABBR1 WILD-TYPE     23     18     27     23     18
D232V5, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABBR1 MUTATED        4      4      2
  GABBR1 WILD-TYPE     44     49     16
D232V6, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              4               49
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABBR1 MUTATED        3      3      0      3      1
  GABBR1 WILD-TYPE     34     28     17     18     12
D232V7, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              3               28
  CLUS_3              0               17
  CLUS_4              3               18
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABBR1 MUTATED        7      2      1
  GABBR1 WILD-TYPE     64     25     20
D232V8, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              2               25
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GABBR1 MUTATED        1      0      1      2      3      1      1
  GABBR1 WILD-TYPE     17      8      9      6     33     24     11
D232V9, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              2                6
  CLUS_5              3               33
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GABBR1 MUTATED        2      0      2      3      1      1
  GABBR1 WILD-TYPE     15     32     11     29     15      6
D232V10, multiclass
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0               32
  CLUS_3              2               11
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(233) Variable = PAMR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAMR1 MUTATED        0      3      3      1
  PAMR1 WILD-TYPE     19     50     27     23
D233V1, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAMR1 MUTATED        4      2      0      1
  PAMR1 WILD-TYPE     31     28     34     25
D233V2, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        3      1      2      1      0
  PAMR1 WILD-TYPE     26     17     11      8     13
D233V3, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        4      1      0      0      2
  PAMR1 WILD-TYPE     28     17     12     10      8
D233V4, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        3      2      0      1      1
  PAMR1 WILD-TYPE     23     18     28     24     19
D233V5, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             2              18
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAMR1 MUTATED        2      4      1
  PAMR1 WILD-TYPE     46     49     17
D233V6, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        4      1      0      1      1
  PAMR1 WILD-TYPE     33     30     17     20     12
D233V7, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAMR1 MUTATED        6      0      1
  PAMR1 WILD-TYPE     65     27     20
D233V8, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAMR1 MUTATED        1      0      1      0      2      3      0
  PAMR1 WILD-TYPE     17      8      9      8     34     22     12
D233V9, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAMR1 MUTATED        1      3      0      1      2      0
  PAMR1 WILD-TYPE     16     29     13     31     14      7
D233V10, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(234) Variable = GRHPR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRHPR MUTATED        1      0      1      3
  GRHPR WILD-TYPE     18     53     29     21
D234V1, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             1              29
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRHPR MUTATED        0      0      2      3
  GRHPR WILD-TYPE     35     30     32     23
D234V2, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             0              35
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRHPR MUTATED        1      1      0      0      1
  GRHPR WILD-TYPE     28     17     13      9     12
D234V3, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRHPR MUTATED        1      1      0      0      1
  GRHPR WILD-TYPE     31     17     12     10      9
D234V4, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRHPR MUTATED        1      1      0      0      2
  GRHPR WILD-TYPE     25     19     28     25     18
D234V5, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRHPR MUTATED        0      3      1
  GRHPR WILD-TYPE     48     50     17
D234V6, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRHPR MUTATED        2      2      0      0      0
  GRHPR WILD-TYPE     35     29     17     21     13
D234V7, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRHPR MUTATED        3      0      1
  GRHPR WILD-TYPE     68     27     20
D234V8, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRHPR MUTATED        0      0      0      0      1      3      0
  GRHPR WILD-TYPE     18      8     10      8     35     22     12
D234V9, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GRHPR MUTATED        0      2      1      0      1      0
  GRHPR WILD-TYPE     17     30     12     32     15      7
D234V10, multiclass
        clus
vv       GRHPR MUTATED GRHPR WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(235) Variable = CYP20A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        2      1      2      1
  CYP20A1 WILD-TYPE     17     52     28     23
D235V1, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        1      2      1      2
  CYP20A1 WILD-TYPE     34     28     33     24
D235V2, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                28
  CLUS_3               1                33
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP20A1 MUTATED        0      1      1      1      0
  CYP20A1 WILD-TYPE     29     17     12      8     13
D235V3, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP20A1 MUTATED        1      1      0      0      1
  CYP20A1 WILD-TYPE     31     17     12     10      9
D235V4, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP20A1 MUTATED        0      2      1      1      2
  CYP20A1 WILD-TYPE     26     18     27     24     18
D235V5, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                18
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP20A1 MUTATED        1      3      2
  CYP20A1 WILD-TYPE     47     50     16
D235V6, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               3                50
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP20A1 MUTATED        0      2      0      3      1
  CYP20A1 WILD-TYPE     37     29     17     18     12
D235V7, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               2                29
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP20A1 MUTATED        4      0      2
  CYP20A1 WILD-TYPE     67     27     19
D235V8, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               0                27
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP20A1 MUTATED        0      0      1      1      2      2      0
  CYP20A1 WILD-TYPE     18      8      9      7     34     23     12
D235V9, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP20A1 MUTATED        0      1      2      1      1      1
  CYP20A1 WILD-TYPE     17     31     11     31     15      6
D235V10, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               2                11
  CLUS_4               1                31
  CLUS_5               1                15
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(236) Variable = ARMCX3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX3 MUTATED        1      1      1      2
  ARMCX3 WILD-TYPE     18     52     29     22
D236V1, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX3 MUTATED        2      0      1      2
  ARMCX3 WILD-TYPE     33     30     33     24
D236V2, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMCX3 MUTATED        3      1      0      1      0
  ARMCX3 WILD-TYPE     26     17     13      8     13
D236V3, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMCX3 MUTATED        2      1      0      2      0
  ARMCX3 WILD-TYPE     30     17     12      8     10
D236V4, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              2                8
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMCX3 MUTATED        2      2      0      1      0
  ARMCX3 WILD-TYPE     24     18     28     24     20
D236V5, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               18
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX3 MUTATED        1      2      2
  ARMCX3 WILD-TYPE     47     51     16
D236V6, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMCX3 MUTATED        2      0      0      1      2
  ARMCX3 WILD-TYPE     35     31     17     20     11
D236V7, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX3 MUTATED        2      1      2
  ARMCX3 WILD-TYPE     69     26     19
D236V8, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARMCX3 MUTATED        0      0      0      0      3      1      1
  ARMCX3 WILD-TYPE     18      8     10      8     33     24     11
D236V9, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARMCX3 MUTATED        0      1      1      1      2      0
  ARMCX3 WILD-TYPE     17     31     12     31     14      7
D236V10, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(237) Variable = MED23 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED23 MUTATED        0      3      3      0
  MED23 WILD-TYPE     19     50     27     24
D237V1, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED23 MUTATED        2      2      1      1
  MED23 WILD-TYPE     33     28     33     25
D237V2, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        2      1      0      1      0
  MED23 WILD-TYPE     27     17     13      8     13
D237V3, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        3      1      0      0      0
  MED23 WILD-TYPE     29     17     12     10     10
D237V4, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        1      1      1      3      0
  MED23 WILD-TYPE     25     19     27     22     20
D237V5, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED23 MUTATED        3      2      1
  MED23 WILD-TYPE     45     51     17
D237V6, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        1      1      2      1      1
  MED23 WILD-TYPE     36     30     15     20     12
D237V7, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED23 MUTATED        3      2      1
  MED23 WILD-TYPE     68     25     20
D237V8, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED23 MUTATED        0      0      2      0      2      1      1
  MED23 WILD-TYPE     18      8      8      8     34     24     11
D237V9, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED23 MUTATED        0      2      0      3      1      0
  MED23 WILD-TYPE     17     30     13     29     15      7
D237V10, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(238) Variable = AR MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        1      2      5      0
  AR WILD-TYPE     18     51     25     24
D238V1, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          1           18
  CLUS_2          2           51
  CLUS_3          5           25
  CLUS_4          0           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        2      3      2      1
  AR WILD-TYPE     33     27     32     25
D238V2, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           33
  CLUS_2          3           27
  CLUS_3          2           32
  CLUS_4          1           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        1      1      0      1      0
  AR WILD-TYPE     28     17     13      8     13
D238V3, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          1           28
  CLUS_2          1           17
  CLUS_3          0           13
  CLUS_4          1            8
  CLUS_5          0           13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        2      1      0      0      0
  AR WILD-TYPE     30     17     12     10     10
D238V4, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           30
  CLUS_2          1           17
  CLUS_3          0           12
  CLUS_4          0           10
  CLUS_5          0           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        2      1      0      4      1
  AR WILD-TYPE     24     19     28     21     19
D238V5, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           24
  CLUS_2          1           19
  CLUS_3          0           28
  CLUS_4          4           21
  CLUS_5          1           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  AR MUTATED        6      1      1
  AR WILD-TYPE     42     52     17
D238V6, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          6           42
  CLUS_2          1           52
  CLUS_3          1           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        2      2      1      2      1
  AR WILD-TYPE     35     29     16     19     12
D238V7, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           35
  CLUS_2          2           29
  CLUS_3          1           16
  CLUS_4          2           19
  CLUS_5          1           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  AR MUTATED        2      6      0
  AR WILD-TYPE     69     21     21
D238V8, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           69
  CLUS_2          6           21
  CLUS_3          0           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AR MUTATED        3      0      1      1      1      1      1
  AR WILD-TYPE     15      8      9      7     35     24     11
D238V9, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          3           15
  CLUS_2          0            8
  CLUS_3          1            9
  CLUS_4          1            7
  CLUS_5          1           35
  CLUS_6          1           24
  CLUS_7          1           11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AR MUTATED        0      1      0      5      1      1
  AR WILD-TYPE     17     31     13     27     15      6
D238V10, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          0           17
  CLUS_2          1           31
  CLUS_3          0           13
  CLUS_4          5           27
  CLUS_5          1           15
  CLUS_6          1            6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(239) Variable = NKTR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        0      2      2      2
  NKTR WILD-TYPE     19     51     28     22
D239V1, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        3      3      0      0
  NKTR WILD-TYPE     32     27     34     26
D239V2, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            3             32
  CLUS_2            3             27
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKTR MUTATED        3      1      0      1      0
  NKTR WILD-TYPE     26     17     13      8     13
D239V3, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            3             26
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKTR MUTATED        4      1      0      0      0
  NKTR WILD-TYPE     28     17     12     10     10
D239V4, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            4             28
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKTR MUTATED        1      1      0      4      0
  NKTR WILD-TYPE     25     19     28     21     20
D239V5, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            0             28
  CLUS_4            4             21
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKTR MUTATED        4      1      1
  NKTR WILD-TYPE     44     52     17
D239V6, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            4             44
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKTR MUTATED        1      1      1      3      0
  NKTR WILD-TYPE     36     30     16     18     13
D239V7, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            3             18
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKTR MUTATED        3      2      1
  NKTR WILD-TYPE     68     25     20
D239V8, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            3             68
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NKTR MUTATED        1      0      2      1      1      0      1
  NKTR WILD-TYPE     17      8      8      7     35     25     11
D239V9, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NKTR MUTATED        0      1      0      4      0      1
  NKTR WILD-TYPE     17     31     13     28     16      6
D239V10, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            4             28
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(240) Variable = VDAC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VDAC1 MUTATED        0      2      2      1
  VDAC1 WILD-TYPE     19     51     28     23
D240V1, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VDAC1 MUTATED        1      1      2      1
  VDAC1 WILD-TYPE     34     29     32     25
D240V2, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VDAC1 MUTATED        0      1      0      1      0
  VDAC1 WILD-TYPE     29     17     13      8     13
D240V3, multiclass
[1] "Remove cluster labels:" "VDAC1 MUTATED"         
clus
  VDAC1 MUTATED VDAC1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-AAUM      TCGA-IB-AAUN 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VDAC1 MUTATED        1      1      0      0      0
  VDAC1 WILD-TYPE     31     17     12     10     10
D240V4, multiclass
[1] "Remove cluster labels:" "VDAC1 MUTATED"         
clus
  VDAC1 MUTATED VDAC1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-AAUM      TCGA-IB-AAUN 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" "VDAC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VDAC1 MUTATED        0      1      2      1      1
  VDAC1 WILD-TYPE     26     19     26     24     19
D240V5, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VDAC1 MUTATED        2      2      1
  VDAC1 WILD-TYPE     46     51     17
D240V6, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VDAC1 MUTATED        0      3      0      2      0
  VDAC1 WILD-TYPE     37     28     17     19     13
D240V7, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VDAC1 MUTATED        3      1      1
  VDAC1 WILD-TYPE     68     26     20
D240V8, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VDAC1 MUTATED        0      0      1      0      0      3      1
  VDAC1 WILD-TYPE     18      8      9      8     36     22     11
D240V9, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             3              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VDAC1 MUTATED        0      2      0      1      1      1
  VDAC1 WILD-TYPE     17     30     13     31     15      6
D240V10, multiclass
        clus
vv       VDAC1 MUTATED VDAC1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(241) Variable = RIT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIT1 MUTATED        1      2      1      0
  RIT1 WILD-TYPE     18     51     29     24
D241V1, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIT1 MUTATED        1      1      2      0
  RIT1 WILD-TYPE     34     29     32     26
D241V2, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIT1 MUTATED        2      1      1      0      0
  RIT1 WILD-TYPE     27     17     12      9     13
D241V3, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            0              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIT1 MUTATED        1      1      1      1      0
  RIT1 WILD-TYPE     31     17     11      9     10
D241V4, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIT1 MUTATED        2      1      0      1      0
  RIT1 WILD-TYPE     24     19     28     24     20
D241V5, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             19
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIT1 MUTATED        2      1      1
  RIT1 WILD-TYPE     46     52     17
D241V6, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIT1 MUTATED        1      0      1      1      1
  RIT1 WILD-TYPE     36     31     16     20     12
D241V7, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIT1 MUTATED        2      1      1
  RIT1 WILD-TYPE     69     26     20
D241V8, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIT1 MUTATED        0      0      0      0      1      1      2
  RIT1 WILD-TYPE     18      8     10      8     35     24     10
D241V9, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RIT1 MUTATED        0      1      1      1      1      0
  RIT1 WILD-TYPE     17     31     12     31     15      7
D241V10, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(242) Variable = FAM47C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        3      9      5      4
  FAM47C WILD-TYPE     16     44     25     20
D242V1, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3               16
  CLUS_2              9               44
  CLUS_3              5               25
  CLUS_4              4               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        8      5      4      4
  FAM47C WILD-TYPE     27     25     30     22
D242V2, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              8               27
  CLUS_2              5               25
  CLUS_3              4               30
  CLUS_4              4               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        7      2      2      3      2
  FAM47C WILD-TYPE     22     16     11      6     11
D242V3, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              7               22
  CLUS_2              2               16
  CLUS_3              2               11
  CLUS_4              3                6
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        8      2      2      3      1
  FAM47C WILD-TYPE     24     16     10      7      9
D242V4, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              8               24
  CLUS_2              2               16
  CLUS_3              2               10
  CLUS_4              3                7
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        5      5      2      7      2
  FAM47C WILD-TYPE     21     15     26     18     18
D242V5, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5               21
  CLUS_2              5               15
  CLUS_3              2               26
  CLUS_4              7               18
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED       10      7      4
  FAM47C WILD-TYPE     38     46     14
D242V6, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1             10               38
  CLUS_2              7               46
  CLUS_3              4               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        8      3      4      2      4
  FAM47C WILD-TYPE     29     28     13     19      9
D242V7, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              8               29
  CLUS_2              3               28
  CLUS_3              4               13
  CLUS_4              2               19
  CLUS_5              4                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED       10      7      4
  FAM47C WILD-TYPE     61     20     17
D242V8, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1             10               61
  CLUS_2              7               20
  CLUS_3              4               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM47C MUTATED        6      0      0      2      7      3      3
  FAM47C WILD-TYPE     12      8     10      6     29     22      9
D242V9, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              6               12
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              2                6
  CLUS_5              7               29
  CLUS_6              3               22
  CLUS_7              3                9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM47C MUTATED        5      3      1      9      2      1
  FAM47C WILD-TYPE     12     29     12     23     14      6
D242V10, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5               12
  CLUS_2              3               29
  CLUS_3              1               12
  CLUS_4              9               23
  CLUS_5              2               14
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(243) Variable = SEC62 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC62 MUTATED        3      1      1      0
  SEC62 WILD-TYPE     16     52     29     24
D243V1, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC62 MUTATED        3      1      1      0
  SEC62 WILD-TYPE     32     29     33     26
D243V2, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC62 MUTATED        1      0      1      1      0
  SEC62 WILD-TYPE     28     18     12      8     13
D243V3, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC62 MUTATED        1      0      0      1      1
  SEC62 WILD-TYPE     31     18     12      9      9
D243V4, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC62 MUTATED        0      1      1      2      1
  SEC62 WILD-TYPE     26     19     27     23     19
D243V5, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEC62 MUTATED        2      2      1
  SEC62 WILD-TYPE     46     51     17
D243V6, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC62 MUTATED        2      1      1      0      1
  SEC62 WILD-TYPE     35     30     16     21     12
D243V7, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEC62 MUTATED        4      0      1
  SEC62 WILD-TYPE     67     27     20
D243V8, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEC62 MUTATED        0      0      0      1      2      2      0
  SEC62 WILD-TYPE     18      8     10      7     34     23     12
D243V9, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEC62 MUTATED        0      1      1      2      1      0
  SEC62 WILD-TYPE     17     31     12     30     15      7
D243V10, multiclass
        clus
vv       SEC62 MUTATED SEC62 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(244) Variable = CDC27 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        0      2      2      2
  CDC27 WILD-TYPE     19     51     28     22
D244V1, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        1      3      0      2
  CDC27 WILD-TYPE     34     27     34     24
D244V2, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             3              27
  CLUS_3             0              34
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC27 MUTATED        1      0      3      0      0
  CDC27 WILD-TYPE     28     18     10      9     13
D244V3, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             3              10
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC27 MUTATED        2      0      1      0      1
  CDC27 WILD-TYPE     30     18     11     10      9
D244V4, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC27 MUTATED        0      0      1      3      2
  CDC27 WILD-TYPE     26     20     27     22     18
D244V5, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        4      2      0
  CDC27 WILD-TYPE     44     51     18
D244V6, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC27 MUTATED        1      2      2      1      0
  CDC27 WILD-TYPE     36     29     15     20     13
D244V7, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        3      3      0
  CDC27 WILD-TYPE     68     24     21
D244V8, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC27 MUTATED        2      0      1      0      1      2      0
  CDC27 WILD-TYPE     16      8      9      8     35     23     12
D244V9, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC27 MUTATED        1      1      0      3      1      0
  CDC27 WILD-TYPE     16     31     13     29     15      7
D244V10, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(245) Variable = PLXNA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        0      0      3      4
  PLXNA3 WILD-TYPE     19     53     27     20
D245V1, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              3               27
  CLUS_4              4               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        2      3      1      1
  PLXNA3 WILD-TYPE     33     27     33     25
D245V2, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              3               27
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA3 MUTATED        1      2      0      3      0
  PLXNA3 WILD-TYPE     28     16     13      6     13
D245V3, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              3                6
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA3 MUTATED        2      2      0      2      0
  PLXNA3 WILD-TYPE     30     16     12      8     10
D245V4, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              2               16
  CLUS_3              0               12
  CLUS_4              2                8
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA3 MUTATED        1      1      1      3      0
  PLXNA3 WILD-TYPE     25     19     27     22     20
D245V5, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        5      1      0
  PLXNA3 WILD-TYPE     43     52     18
D245V6, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              5               43
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA3 MUTATED        0      0      3      2      1
  PLXNA3 WILD-TYPE     37     31     14     19     12
D245V7, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              0               31
  CLUS_3              3               14
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        2      4      0
  PLXNA3 WILD-TYPE     69     23     21
D245V8, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              4               23
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLXNA3 MUTATED        4      0      1      0      1      0      0
  PLXNA3 WILD-TYPE     14      8      9      8     35     25     12
D245V9, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              4               14
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLXNA3 MUTATED        0      0      1      5      0      0
  PLXNA3 WILD-TYPE     17     32     12     27     16      7
D245V10, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              5               27
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(246) Variable = ACCN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN2 MUTATED        0      3      2      1
  ACCN2 WILD-TYPE     19     50     28     23
D246V1, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN2 MUTATED        4      1      0      1
  ACCN2 WILD-TYPE     31     29     34     25
D246V2, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACCN2 MUTATED        1      1      0      3      0
  ACCN2 WILD-TYPE     28     17     13      6     13
D246V3, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             3               6
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACCN2 MUTATED        2      1      0      2      0
  ACCN2 WILD-TYPE     30     17     12      8     10
D246V4, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             2               8
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACCN2 MUTATED        3      0      0      1      1
  ACCN2 WILD-TYPE     23     20     28     24     19
D246V5, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACCN2 MUTATED        2      3      0
  ACCN2 WILD-TYPE     46     50     18
D246V6, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACCN2 MUTATED        2      1      0      2      0
  ACCN2 WILD-TYPE     35     30     17     19     13
D246V7, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACCN2 MUTATED        4      1      0
  ACCN2 WILD-TYPE     67     26     21
D246V8, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACCN2 MUTATED        1      0      1      1      2      0      0
  ACCN2 WILD-TYPE     17      8      9      7     34     25     12
D246V9, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACCN2 MUTATED        1      1      1      2      0      0
  ACCN2 WILD-TYPE     16     31     12     30     16      7
D246V10, multiclass
        clus
vv       ACCN2 MUTATED ACCN2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(247) Variable = RGS22 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        1      2      1      1
  RGS22 WILD-TYPE     18     51     29     23
D247V1, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        1      1      2      1
  RGS22 WILD-TYPE     34     29     32     25
D247V2, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        1      1      0      0      0
  RGS22 WILD-TYPE     28     17     13      9     13
D247V3, multiclass
[1] "Remove cluster labels:" "RGS22 MUTATED"         
clus
  RGS22 MUTATED RGS22 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        1      1      0      0      0
  RGS22 WILD-TYPE     31     17     12     10     10
D247V4, multiclass
[1] "Remove cluster labels:" "RGS22 MUTATED"         
clus
  RGS22 MUTATED RGS22 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        1      1      1      1      1
  RGS22 WILD-TYPE     25     19     27     24     19
D247V5, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED        2      3      0
  RGS22 WILD-TYPE     46     50     18
D247V6, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        2      1      1      0      1
  RGS22 WILD-TYPE     35     30     16     21     12
D247V7, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED        3      1      1
  RGS22 WILD-TYPE     68     26     20
D247V8, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RGS22 MUTATED        0      0      1      1      0      2      1
  RGS22 WILD-TYPE     18      8      9      7     36     23     11
D247V9, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS22 MUTATED        0      2      1      2      0      0
  RGS22 WILD-TYPE     17     30     12     30     16      7
D247V10, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(248) Variable = FRG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRG1 MUTATED        2      2      1      2
  FRG1 WILD-TYPE     17     51     29     22
D248V1, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRG1 MUTATED        2      0      3      2
  FRG1 WILD-TYPE     33     30     31     24
D248V2, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            3             31
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRG1 MUTATED        1      0      0      0      2
  FRG1 WILD-TYPE     28     18     13      9     11
D248V3, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            0              9
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRG1 MUTATED        2      0      0      0      1
  FRG1 WILD-TYPE     30     18     12     10      9
D248V4, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRG1 MUTATED        1      0      3      0      3
  FRG1 WILD-TYPE     25     20     25     25     17
D248V5, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            3             25
  CLUS_4            0             25
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRG1 MUTATED        2      4      1
  FRG1 WILD-TYPE     46     49     17
D248V6, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            4             49
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRG1 MUTATED        2      3      0      2      0
  FRG1 WILD-TYPE     35     28     17     19     13
D248V7, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            3             28
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRG1 MUTATED        6      1      0
  FRG1 WILD-TYPE     65     26     21
D248V8, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            6             65
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FRG1 MUTATED        1      0      0      1      3      1      1
  FRG1 WILD-TYPE     17      8     10      7     33     24     11
D248V9, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FRG1 MUTATED        1      4      1      1      0      0
  FRG1 WILD-TYPE     16     28     12     31     16      7
D248V10, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            4             28
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(249) Variable = CCDC88A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        1      4      0      1
  CCDC88A WILD-TYPE     18     49     30     23
D249V1, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               1                18
  CLUS_2               4                49
  CLUS_3               0                30
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        2      0      3      1
  CCDC88A WILD-TYPE     33     30     31     25
D249V2, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               3                31
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        2      1      2      0      0
  CCDC88A WILD-TYPE     27     17     11      9     13
D249V3, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               2                11
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        2      1      2      0      0
  CCDC88A WILD-TYPE     30     17     10     10     10
D249V4, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               2                10
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        1      1      3      0      1
  CCDC88A WILD-TYPE     25     19     25     25     19
D249V5, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               3                25
  CLUS_4               0                25
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED        3      3      0
  CCDC88A WILD-TYPE     45     50     18
D249V6, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               3                45
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        4      2      0      0      0
  CCDC88A WILD-TYPE     33     29     17     21     13
D249V7, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               4                33
  CLUS_2               2                29
  CLUS_3               0                17
  CLUS_4               0                21
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED        6      0      0
  CCDC88A WILD-TYPE     65     27     21
D249V8, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               6                65
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC88A MUTATED        0      0      1      1      2      2      0
  CCDC88A WILD-TYPE     18      8      9      7     34     23     12
D249V9, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC88A MUTATED        2      3      1      0      0      0
  CCDC88A WILD-TYPE     15     29     12     32     16      7
D249V10, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2                15
  CLUS_2               3                29
  CLUS_3               1                12
  CLUS_4               0                32
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(250) Variable = CR1L MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        1      0      2      2
  CR1L WILD-TYPE     18     53     28     22
D250V1, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             18
  CLUS_2            0             53
  CLUS_3            2             28
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        2      0      2      1
  CR1L WILD-TYPE     33     30     32     25
D250V2, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        1      0      0      1      0
  CR1L WILD-TYPE     28     18     13      8     13
D250V3, multiclass
[1] "Remove cluster labels:" "CR1L MUTATED"          
clus
  CR1L MUTATED CR1L WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        2      0      0      0      0
  CR1L WILD-TYPE     30     18     12     10     10
D250V4, multiclass
[1] "Remove cluster labels:" "CR1L MUTATED"          
clus
  CR1L MUTATED CR1L WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" "CR1L WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        3      0      0      1      1
  CR1L WILD-TYPE     23     20     28     24     19
D250V5, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            3             23
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        2      2      1
  CR1L WILD-TYPE     46     51     17
D250V6, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        1      0      1      2      1
  CR1L WILD-TYPE     36     31     16     19     12
D250V7, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        4      0      1
  CR1L WILD-TYPE     67     27     20
D250V8, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            4             67
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CR1L MUTATED        0      0      1      1      2      0      0
  CR1L WILD-TYPE     18      8      9      7     34     25     12
D250V9, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1L MUTATED        1      1      0      1      1      0
  CR1L WILD-TYPE     16     31     13     31     15      7
D250V10, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(251) Variable = HDLBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDLBP MUTATED        0      2      1      5
  HDLBP WILD-TYPE     19     51     29     19
D251V1, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             5              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDLBP MUTATED        2      2      4      0
  HDLBP WILD-TYPE     33     28     30     26
D251V2, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             4              30
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        2      1      0      1      0
  HDLBP WILD-TYPE     27     17     13      8     13
D251V3, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        3      1      0      0      0
  HDLBP WILD-TYPE     29     17     12     10     10
D251V4, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        2      1      2      3      0
  HDLBP WILD-TYPE     24     19     26     22     20
D251V5, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDLBP MUTATED        4      4      0
  HDLBP WILD-TYPE     44     49     18
D251V6, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             4              44
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        4      0      3      1      0
  HDLBP WILD-TYPE     33     31     14     20     13
D251V7, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             4              33
  CLUS_2             0              31
  CLUS_3             3              14
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDLBP MUTATED        5      3      0
  HDLBP WILD-TYPE     66     24     21
D251V8, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             5              66
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HDLBP MUTATED        2      0      1      0      4      1      0
  HDLBP WILD-TYPE     16      8      9      8     32     24     12
D251V9, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HDLBP MUTATED        1      3      0      4      0      0
  HDLBP WILD-TYPE     16     29     13     28     16      7
D251V10, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             4              28
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(252) Variable = KBTBD4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD4 MUTATED        2      1      0      1
  KBTBD4 WILD-TYPE     17     52     30     23
D252V1, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              1               52
  CLUS_3              0               30
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD4 MUTATED        4      0      0      0
  KBTBD4 WILD-TYPE     31     30     34     26
D252V2, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD4 MUTATED        1      0      0      0      0
  KBTBD4 WILD-TYPE     28     18     13      9     13
D252V3, multiclass
[1] "Remove cluster labels:" "KBTBD4 MUTATED"        
clus
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-Z5-AAPL 
"KBTBD4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD4 MUTATED        1      0      0      0      0
  KBTBD4 WILD-TYPE     31     18     12     10     10
D252V4, multiclass
[1] "Remove cluster labels:" "KBTBD4 MUTATED"        
clus
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-Z5-AAPL 
"KBTBD4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD4 MUTATED        1      0      2      0      1
  KBTBD4 WILD-TYPE     25     20     26     25     19
D252V5, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              0               25
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD4 MUTATED        1      3      0
  KBTBD4 WILD-TYPE     47     50     18
D252V6, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD4 MUTATED        3      1      0      0      0
  KBTBD4 WILD-TYPE     34     30     17     21     13
D252V7, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD4 MUTATED        4      0      0
  KBTBD4 WILD-TYPE     67     27     21
D252V8, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KBTBD4 MUTATED        1      0      0      1      2      0      0
  KBTBD4 WILD-TYPE     17      8     10      7     34     25     12
D252V9, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KBTBD4 MUTATED        1      2      1      0      0      0
  KBTBD4 WILD-TYPE     16     30     12     32     16      7
D252V10, multiclass
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              0               32
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(253) Variable = SBSN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        1      1      2      1
  SBSN WILD-TYPE     18     52     28     23
D253V1, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            1             18
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        3      0      1      1
  SBSN WILD-TYPE     32     30     33     25
D253V2, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBSN MUTATED        1      0      0      1      0
  SBSN WILD-TYPE     28     18     13      8     13
D253V3, multiclass
[1] "Remove cluster labels:" "SBSN MUTATED"          
clus
  SBSN MUTATED SBSN WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBSN MUTATED        1      0      0      1      0
  SBSN WILD-TYPE     31     18     12      9     10
D253V4, multiclass
[1] "Remove cluster labels:" "SBSN MUTATED"          
clus
  SBSN MUTATED SBSN WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" "SBSN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBSN MUTATED        3      0      0      2      0
  SBSN WILD-TYPE     23     20     28     23     20
D253V5, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            3             23
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBSN MUTATED        3      2      0
  SBSN WILD-TYPE     45     51     18
D253V6, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            3             45
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBSN MUTATED        1      1      0      3      0
  SBSN WILD-TYPE     36     30     17     18     13
D253V7, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            3             18
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBSN MUTATED        4      1      0
  SBSN WILD-TYPE     67     26     21
D253V8, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SBSN MUTATED        1      0      3      0      1      0      0
  SBSN WILD-TYPE     17      8      7      8     35     25     12
D253V9, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            3              7
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SBSN MUTATED        2      0      1      2      0      0
  SBSN WILD-TYPE     15     32     12     30     16      7
D253V10, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0             32
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(254) Variable = KCTD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        0      1      1      2
  KCTD3 WILD-TYPE     19     52     29     22
D254V1, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        4      0      0      0
  KCTD3 WILD-TYPE     31     30     34     26
D254V2, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        2      0      1      1      0
  KCTD3 WILD-TYPE     27     18     12      8     13
D254V3, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        3      0      1      0      0
  KCTD3 WILD-TYPE     29     18     11     10     10
D254V4, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        1      0      1      2      0
  KCTD3 WILD-TYPE     25     20     27     23     20
D254V5, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        3      1      0
  KCTD3 WILD-TYPE     45     52     18
D254V6, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        2      0      0      2      0
  KCTD3 WILD-TYPE     35     31     17     19     13
D254V7, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        4      0      0
  KCTD3 WILD-TYPE     67     27     21
D254V8, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCTD3 MUTATED        1      0      2      0      1      0      0
  KCTD3 WILD-TYPE     17      8      8      8     35     25     12
D254V9, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD3 MUTATED        1      1      0      2      0      0
  KCTD3 WILD-TYPE     16     31     13     30     16      7
D254V10, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(255) Variable = GUCY2F MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED        1      1      2      3
  GUCY2F WILD-TYPE     18     52     28     21
D255V1, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED        3      1      1      2
  GUCY2F WILD-TYPE     32     29     33     24
D255V2, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUCY2F MUTATED        3      1      1      1      0
  GUCY2F WILD-TYPE     26     17     12      8     13
D255V3, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              3               26
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUCY2F MUTATED        4      1      1      0      0
  GUCY2F WILD-TYPE     28     17     11     10     10
D255V4, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              4               28
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUCY2F MUTATED        1      2      2      1      1
  GUCY2F WILD-TYPE     25     18     26     24     19
D255V5, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2F MUTATED        2      3      2
  GUCY2F WILD-TYPE     46     50     16
D255V6, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUCY2F MUTATED        2      2      0      1      2
  GUCY2F WILD-TYPE     35     29     17     20     11
D255V7, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2F MUTATED        5      1      1
  GUCY2F WILD-TYPE     66     26     20
D255V8, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GUCY2F MUTATED        0      0      1      1      2      2      1
  GUCY2F WILD-TYPE     18      8      9      7     34     23     11
D255V9, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GUCY2F MUTATED        0      3      1      1      1      1
  GUCY2F WILD-TYPE     17     29     12     31     15      6
D255V10, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(256) Variable = PHIP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHIP MUTATED        1      3      1      2
  PHIP WILD-TYPE     18     50     29     22
D256V1, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            1             18
  CLUS_2            3             50
  CLUS_3            1             29
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHIP MUTATED        4      0      2      1
  PHIP WILD-TYPE     31     30     32     25
D256V2, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            4             31
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHIP MUTATED        3      1      0      1      0
  PHIP WILD-TYPE     26     17     13      8     13
D256V3, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            3             26
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHIP MUTATED        3      1      0      1      0
  PHIP WILD-TYPE     29     17     12      9     10
D256V4, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHIP MUTATED        3      1      1      1      1
  PHIP WILD-TYPE     23     19     27     24     19
D256V5, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            3             23
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHIP MUTATED        2      5      0
  PHIP WILD-TYPE     46     48     18
D256V6, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            2             46
  CLUS_2            5             48
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHIP MUTATED        3      1      0      2      1
  PHIP WILD-TYPE     34     30     17     19     12
D256V7, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHIP MUTATED        5      1      1
  PHIP WILD-TYPE     66     26     20
D256V8, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            5             66
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHIP MUTATED        1      1      1      1      2      1      0
  PHIP WILD-TYPE     17      7      9      7     34     24     12
D256V9, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHIP MUTATED        1      1      2      2      1      0
  PHIP WILD-TYPE     16     31     11     30     15      7
D256V10, multiclass
        clus
vv       PHIP MUTATED PHIP WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            2             11
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(257) Variable = FOXJ2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXJ2 MUTATED        1      2      2      0
  FOXJ2 WILD-TYPE     18     51     28     24
D257V1, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXJ2 MUTATED        1      0      2      2
  FOXJ2 WILD-TYPE     34     30     32     24
D257V2, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXJ2 MUTATED        0      1      0      1      2
  FOXJ2 WILD-TYPE     29     17     13      8     11
D257V3, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXJ2 MUTATED        1      1      1      0      1
  FOXJ2 WILD-TYPE     31     17     11     10      9
D257V4, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXJ2 MUTATED        1      0      1      2      1
  FOXJ2 WILD-TYPE     25     20     27     23     19
D257V5, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXJ2 MUTATED        2      3      0
  FOXJ2 WILD-TYPE     46     50     18
D257V6, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXJ2 MUTATED        2      2      0      1      0
  FOXJ2 WILD-TYPE     35     29     17     20     13
D257V7, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXJ2 MUTATED        4      1      0
  FOXJ2 WILD-TYPE     67     26     21
D257V8, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXJ2 MUTATED        0      0      2      1      2      0      0
  FOXJ2 WILD-TYPE     18      8      8      7     34     25     12
D257V9, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXJ2 MUTATED        0      2      1      2      0      0
  FOXJ2 WILD-TYPE     17     30     12     30     16      7
D257V10, multiclass
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(258) Variable = KIF3C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF3C MUTATED        1      1      2      0
  KIF3C WILD-TYPE     18     52     28     24
D258V1, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF3C MUTATED        1      1      1      1
  KIF3C WILD-TYPE     34     29     33     25
D258V2, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF3C MUTATED        1      0      1      1      0
  KIF3C WILD-TYPE     28     18     12      8     13
D258V3, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF3C MUTATED        2      0      1      0      0
  KIF3C WILD-TYPE     30     18     11     10     10
D258V4, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF3C MUTATED        0      0      1      1      1
  KIF3C WILD-TYPE     26     20     27     24     19
D258V5, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF3C MUTATED        2      1      0
  KIF3C WILD-TYPE     46     52     18
D258V6, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF3C MUTATED        1      1      0      1      0
  KIF3C WILD-TYPE     36     30     17     20     13
D258V7, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF3C MUTATED        2      1      0
  KIF3C WILD-TYPE     69     26     21
D258V8, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF3C MUTATED        0      0      1      0      1      1      0
  KIF3C WILD-TYPE     18      8      9      8     35     24     12
D258V9, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF3C MUTATED        0      1      0      1      1      0
  KIF3C WILD-TYPE     17     31     13     31     15      7
D258V10, multiclass
        clus
vv       KIF3C MUTATED KIF3C WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(259) Variable = ZC3H13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        1      2      3      3
  ZC3H13 WILD-TYPE     18     51     27     21
D259V1, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              3               27
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        4      2      2      1
  ZC3H13 WILD-TYPE     31     28     32     25
D259V2, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              2               28
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        3      2      0      1      0
  ZC3H13 WILD-TYPE     26     16     13      8     13
D259V3, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        5      1      0      0      0
  ZC3H13 WILD-TYPE     27     17     12     10     10
D259V4, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              5               27
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        1      2      1      3      2
  ZC3H13 WILD-TYPE     25     18     27     22     18
D259V5, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED        3      4      2
  ZC3H13 WILD-TYPE     45     49     16
D259V6, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              4               49
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        2      3      2      2      0
  ZC3H13 WILD-TYPE     35     28     15     19     13
D259V7, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              3               28
  CLUS_3              2               15
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED        5      2      2
  ZC3H13 WILD-TYPE     66     25     19
D259V8, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              2               25
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H13 MUTATED        2      1      1      0      0      4      1
  ZC3H13 WILD-TYPE     16      7      9      8     36     21     11
D259V9, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              4               21
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H13 MUTATED        0      3      1      3      1      1
  ZC3H13 WILD-TYPE     17     29     12     29     15      6
D259V10, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              1               12
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(260) Variable = NAGPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAGPA MUTATED        2      1      2      0
  NAGPA WILD-TYPE     17     52     28     24
D260V1, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAGPA MUTATED        2      1      1      1
  NAGPA WILD-TYPE     33     29     33     25
D260V2, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        2      0      0      1      0
  NAGPA WILD-TYPE     27     18     13      8     13
D260V3, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        3      0      0      0      0
  NAGPA WILD-TYPE     29     18     12     10     10
D260V4, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        0      0      2      2      1
  NAGPA WILD-TYPE     26     20     26     23     19
D260V5, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAGPA MUTATED        3      2      0
  NAGPA WILD-TYPE     45     51     18
D260V6, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        2      1      1      1      0
  NAGPA WILD-TYPE     35     30     16     20     13
D260V7, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAGPA MUTATED        3      2      0
  NAGPA WILD-TYPE     68     25     21
D260V8, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAGPA MUTATED        0      0      1      0      2      1      1
  NAGPA WILD-TYPE     18      8      9      8     34     24     11
D260V9, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAGPA MUTATED        0      2      0      2      1      0
  NAGPA WILD-TYPE     17     30     13     30     15      7
D260V10, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(261) Variable = CLIP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP1 MUTATED        1      4      1      0
  CLIP1 WILD-TYPE     18     49     29     24
D261V1, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP1 MUTATED        3      0      2      1
  CLIP1 WILD-TYPE     32     30     32     25
D261V2, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIP1 MUTATED        1      1      0      1      0
  CLIP1 WILD-TYPE     28     17     13      8     13
D261V3, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIP1 MUTATED        2      1      0      0      0
  CLIP1 WILD-TYPE     30     17     12     10     10
D261V4, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIP1 MUTATED        2      0      1      2      1
  CLIP1 WILD-TYPE     24     20     27     23     19
D261V5, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP1 MUTATED        2      4      0
  CLIP1 WILD-TYPE     46     49     18
D261V6, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIP1 MUTATED        1      1      1      3      0
  CLIP1 WILD-TYPE     36     30     16     18     13
D261V7, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP1 MUTATED        5      1      0
  CLIP1 WILD-TYPE     66     26     21
D261V8, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLIP1 MUTATED        1      0      2      1      2      0      0
  CLIP1 WILD-TYPE     17      8      8      7     34     25     12
D261V9, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLIP1 MUTATED        1      1      2      2      0      0
  CLIP1 WILD-TYPE     16     31     11     30     16      7
D261V10, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(262) Variable = FNDC7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        0      2      1      1
  FNDC7 WILD-TYPE     19     51     29     23
D262V1, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        1      1      1      1
  FNDC7 WILD-TYPE     34     29     33     25
D262V2, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC7 MUTATED        2      0      0      0      1
  FNDC7 WILD-TYPE     27     18     13      9     12
D262V3, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC7 MUTATED        2      1      0      0      0
  FNDC7 WILD-TYPE     30     17     12     10     10
D262V4, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC7 MUTATED        0      0      2      1      1
  FNDC7 WILD-TYPE     26     20     26     24     19
D262V5, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC7 MUTATED        1      3      0
  FNDC7 WILD-TYPE     47     50     18
D262V6, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC7 MUTATED        2      1      1      0      0
  FNDC7 WILD-TYPE     35     30     16     21     13
D262V7, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC7 MUTATED        3      1      0
  FNDC7 WILD-TYPE     68     26     21
D262V8, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FNDC7 MUTATED        1      0      0      1      2      0      0
  FNDC7 WILD-TYPE     17      8     10      7     34     25     12
D262V9, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FNDC7 MUTATED        0      2      1      1      0      0
  FNDC7 WILD-TYPE     17     30     12     31     16      7
D262V10, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(263) Variable = MOGS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOGS MUTATED        2      2      1      0
  MOGS WILD-TYPE     17     51     29     24
D263V1, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOGS MUTATED        1      0      3      1
  MOGS WILD-TYPE     34     30     31     25
D263V2, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            1             34
  CLUS_2            0             30
  CLUS_3            3             31
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOGS MUTATED        0      1      2      1      0
  MOGS WILD-TYPE     29     17     11      8     13
D263V3, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            0             29
  CLUS_2            1             17
  CLUS_3            2             11
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOGS MUTATED        1      1      2      0      0
  MOGS WILD-TYPE     31     17     10     10     10
D263V4, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            2             10
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOGS MUTATED        0      0      3      1      1
  MOGS WILD-TYPE     26     20     25     24     19
D263V5, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            3             25
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MOGS MUTATED        2      3      0
  MOGS WILD-TYPE     46     50     18
D263V6, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOGS MUTATED        1      3      0      1      0
  MOGS WILD-TYPE     36     28     17     20     13
D263V7, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            1             36
  CLUS_2            3             28
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MOGS MUTATED        5      0      0
  MOGS WILD-TYPE     66     27     21
D263V8, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            5             66
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MOGS MUTATED        0      1      1      1      1      1      0
  MOGS WILD-TYPE     18      7      9      7     35     24     12
D263V9, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MOGS MUTATED        1      1      1      2      0      0
  MOGS WILD-TYPE     16     31     12     30     16      7
D263V10, multiclass
        clus
vv       MOGS MUTATED MOGS WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(264) Variable = BCL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL3 MUTATED        0      3      2      0
  BCL3 WILD-TYPE     19     50     28     24
D264V1, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL3 MUTATED        2      0      2      1
  BCL3 WILD-TYPE     33     30     32     25
D264V2, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL3 MUTATED        0      0      1      2      1
  BCL3 WILD-TYPE     29     18     12      7     12
D264V3, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            2              7
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL3 MUTATED        1      0      1      1      1
  BCL3 WILD-TYPE     31     18     11      9      9
D264V4, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL3 MUTATED        0      0      2      2      1
  BCL3 WILD-TYPE     26     20     26     23     19
D264V5, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL3 MUTATED        3      2      0
  BCL3 WILD-TYPE     45     51     18
D264V6, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL3 MUTATED        2      1      1      1      0
  BCL3 WILD-TYPE     35     30     16     20     13
D264V7, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL3 MUTATED        5      0      0
  BCL3 WILD-TYPE     66     27     21
D264V8, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL3 MUTATED        0      1      1      0      2      1      0
  BCL3 WILD-TYPE     18      7      9      8     34     24     12
D264V9, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL3 MUTATED        0      2      0      2      1      0
  BCL3 WILD-TYPE     17     30     13     30     15      7
D264V10, multiclass
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(265) Variable = MED12L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED        2      4      5      2
  MED12L WILD-TYPE     17     49     25     22
D265V1, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              2               17
  CLUS_2              4               49
  CLUS_3              5               25
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED        4      3      4      2
  MED12L WILD-TYPE     31     27     30     24
D265V2, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              4               31
  CLUS_2              3               27
  CLUS_3              4               30
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12L MUTATED        3      2      2      1      2
  MED12L WILD-TYPE     26     16     11      8     11
D265V3, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              3               26
  CLUS_2              2               16
  CLUS_3              2               11
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12L MUTATED        5      2      1      0      2
  MED12L WILD-TYPE     27     16     11     10      8
D265V4, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              5               27
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12L MUTATED        3      1      4      4      1
  MED12L WILD-TYPE     23     19     24     21     19
D265V5, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              3               23
  CLUS_2              1               19
  CLUS_3              4               24
  CLUS_4              4               21
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MED12L MUTATED        8      4      1
  MED12L WILD-TYPE     40     49     17
D265V6, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              8               40
  CLUS_2              4               49
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12L MUTATED        5      2      3      2      1
  MED12L WILD-TYPE     32     29     14     19     12
D265V7, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              5               32
  CLUS_2              2               29
  CLUS_3              3               14
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MED12L MUTATED        9      3      1
  MED12L WILD-TYPE     62     24     20
D265V8, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              9               62
  CLUS_2              3               24
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED12L MUTATED        2      1      1      0      4      2      2
  MED12L WILD-TYPE     16      7      9      8     32     23     10
D265V9, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              4               32
  CLUS_6              2               23
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED12L MUTATED        0      5      0      5      2      0
  MED12L WILD-TYPE     17     27     13     27     14      7
D265V10, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              0               17
  CLUS_2              5               27
  CLUS_3              0               13
  CLUS_4              5               27
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(266) Variable = EXOC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED        1      1      2      3
  EXOC4 WILD-TYPE     18     52     28     21
D266V1, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED        4      1      2      0
  EXOC4 WILD-TYPE     31     29     32     26
D266V2, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC4 MUTATED        4      0      0      1      0
  EXOC4 WILD-TYPE     25     18     13      8     13
D266V3, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC4 MUTATED        5      0      0      0      0
  EXOC4 WILD-TYPE     27     18     12     10     10
D266V4, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC4 MUTATED        2      1      1      2      1
  EXOC4 WILD-TYPE     24     19     27     23     19
D266V5, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXOC4 MUTATED        3      3      1
  EXOC4 WILD-TYPE     45     50     17
D266V6, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC4 MUTATED        3      2      1      1      0
  EXOC4 WILD-TYPE     34     29     16     20     13
D266V7, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXOC4 MUTATED        5      1      1
  EXOC4 WILD-TYPE     66     26     20
D266V8, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EXOC4 MUTATED        0      0      1      1      3      2      0
  EXOC4 WILD-TYPE     18      8      9      7     33     23     12
D266V9, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             3              33
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOC4 MUTATED        1      2      1      2      1      0
  EXOC4 WILD-TYPE     16     30     12     30     15      7
D266V10, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(267) Variable = MARCH7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARCH7 MUTATED        1      2      0      1
  MARCH7 WILD-TYPE     18     51     30     23
D267V1, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              0               30
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARCH7 MUTATED        1      0      3      0
  MARCH7 WILD-TYPE     34     30     31     26
D267V2, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              3               31
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        1      2      0      0      1
  MARCH7 WILD-TYPE     28     16     13      9     12
D267V3, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        1      2      1      0      0
  MARCH7 WILD-TYPE     31     16     11     10     10
D267V4, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        1      0      3      0      0
  MARCH7 WILD-TYPE     25     20     25     25     20
D267V5, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              3               25
  CLUS_4              0               25
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MARCH7 MUTATED        1      3      0
  MARCH7 WILD-TYPE     47     50     18
D267V6, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        4      0      0      0      0
  MARCH7 WILD-TYPE     33     31     17     21     13
D267V7, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MARCH7 MUTATED        4      0      0
  MARCH7 WILD-TYPE     67     27     21
D267V8, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MARCH7 MUTATED        0      0      0      0      4      0      0
  MARCH7 WILD-TYPE     18      8     10      8     32     25     12
D267V9, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              4               32
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MARCH7 MUTATED        0      4      0      0      0      0
  MARCH7 WILD-TYPE     17     28     13     32     16      7
D267V10, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              4               28
  CLUS_3              0               13
  CLUS_4              0               32
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(268) Variable = TMCC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCC1 MUTATED        0      1      2      3
  TMCC1 WILD-TYPE     19     52     28     21
D268V1, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCC1 MUTATED        1      2      1      2
  TMCC1 WILD-TYPE     34     28     33     24
D268V2, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCC1 MUTATED        0      0      1      1      0
  TMCC1 WILD-TYPE     29     18     12      8     13
D268V3, multiclass
[1] "Remove cluster labels:" "TMCC1 MUTATED"         
clus
  TMCC1 MUTATED TMCC1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IH 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCC1 MUTATED        1      0      1      0      0
  TMCC1 WILD-TYPE     31     18     11     10     10
D268V4, multiclass
[1] "Remove cluster labels:" "TMCC1 MUTATED"         
clus
  TMCC1 MUTATED TMCC1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IH 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" "TMCC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCC1 MUTATED        0      0      1      3      2
  TMCC1 WILD-TYPE     26     20     27     22     18
D268V5, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        4      2      0
  TMCC1 WILD-TYPE     44     51     18
D268V6, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCC1 MUTATED        0      3      1      2      0
  TMCC1 WILD-TYPE     37     28     16     19     13
D268V7, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCC1 MUTATED        4      2      0
  TMCC1 WILD-TYPE     67     25     21
D268V8, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMCC1 MUTATED        0      0      1      0      1      3      0
  TMCC1 WILD-TYPE     18      8      9      8     35     22     12
D268V9, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMCC1 MUTATED        0      2      1      2      0      0
  TMCC1 WILD-TYPE     17     30     12     30     16      7
D268V10, multiclass
        clus
vv       TMCC1 MUTATED TMCC1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(269) Variable = NBPF10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF10 MUTATED        1      6      2      0
  NBPF10 WILD-TYPE     18     47     28     24
D269V1, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              6               47
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF10 MUTATED        5      1      2      0
  NBPF10 WILD-TYPE     30     29     32     26
D269V2, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              5               30
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF10 MUTATED        1      2      1      0      1
  NBPF10 WILD-TYPE     28     16     12      9     12
D269V3, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               16
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF10 MUTATED        1      2      1      0      1
  NBPF10 WILD-TYPE     31     16     11     10      9
D269V4, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF10 MUTATED        3      0      4      1      0
  NBPF10 WILD-TYPE     23     20     24     24     20
D269V5, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              0               20
  CLUS_3              4               24
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        3      5      0
  NBPF10 WILD-TYPE     45     48     18
D269V6, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              5               48
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF10 MUTATED        5      1      0      2      0
  NBPF10 WILD-TYPE     32     30     17     19     13
D269V7, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        7      1      0
  NBPF10 WILD-TYPE     64     26     21
D269V8, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              7               64
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF10 MUTATED        0      0      1      1      5      0      0
  NBPF10 WILD-TYPE     18      8      9      7     31     25     12
D269V9, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              5               31
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBPF10 MUTATED        1      4      1      1      0      0
  NBPF10 WILD-TYPE     16     28     12     31     16      7
D269V10, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              4               28
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(270) Variable = IFFO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFFO1 MUTATED        0      2      1      2
  IFFO1 WILD-TYPE     19     51     29     22
D270V1, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFFO1 MUTATED        1      1      3      0
  IFFO1 WILD-TYPE     34     29     31     26
D270V2, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFFO1 MUTATED        2      1      0      1      0
  IFFO1 WILD-TYPE     27     17     13      8     13
D270V3, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFFO1 MUTATED        2      1      0      1      0
  IFFO1 WILD-TYPE     30     17     12      9     10
D270V4, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFFO1 MUTATED        3      1      0      1      0
  IFFO1 WILD-TYPE     23     19     28     24     20
D270V5, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFFO1 MUTATED        3      1      1
  IFFO1 WILD-TYPE     45     52     17
D270V6, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFFO1 MUTATED        2      0      0      3      0
  IFFO1 WILD-TYPE     35     31     17     18     13
D270V7, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFFO1 MUTATED        4      0      1
  IFFO1 WILD-TYPE     67     27     20
D270V8, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFFO1 MUTATED        0      0      1      0      2      1      1
  IFFO1 WILD-TYPE     18      8      9      8     34     24     11
D270V9, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFFO1 MUTATED        1      1      1      1      0      1
  IFFO1 WILD-TYPE     16     31     12     31     16      6
D270V10, multiclass
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(271) Variable = ARHGEF7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED        2      0      3      1
  ARHGEF7 WILD-TYPE     17     53     27     23
D271V1, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               0                53
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED        2      1      1      2
  ARHGEF7 WILD-TYPE     33     29     33     24
D271V2, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF7 MUTATED        2      0      1      1      0
  ARHGEF7 WILD-TYPE     27     18     12      8     13
D271V3, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF7 MUTATED        3      0      0      0      1
  ARHGEF7 WILD-TYPE     29     18     12     10      9
D271V4, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF7 MUTATED        0      0      1      2      3
  ARHGEF7 WILD-TYPE     26     20     27     23     17
D271V5, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               3                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF7 MUTATED        2      3      1
  ARHGEF7 WILD-TYPE     46     50     17
D271V6, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               3                50
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF7 MUTATED        1      3      1      1      0
  ARHGEF7 WILD-TYPE     36     28     16     20     13
D271V7, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               3                28
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF7 MUTATED        4      1      1
  ARHGEF7 WILD-TYPE     67     26     20
D271V8, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGEF7 MUTATED        0      0      1      1      2      2      0
  ARHGEF7 WILD-TYPE     18      8      9      7     34     23     12
D271V9, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF7 MUTATED        0      1      1      2      2      0
  ARHGEF7 WILD-TYPE     17     31     12     30     14      7
D271V10, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               2                14
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(272) Variable = ZNF878 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        1      3      2      2
  ZNF878 WILD-TYPE     18     50     28     22
D272V1, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              2               28
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        3      2      1      2
  ZNF878 WILD-TYPE     32     28     33     24
D272V2, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              1               33
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        2      1      1      2      0
  ZNF878 WILD-TYPE     27     17     12      7     13
D272V3, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        3      1      0      1      1
  ZNF878 WILD-TYPE     29     17     12      9      9
D272V4, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        1      2      2      2      1
  ZNF878 WILD-TYPE     25     18     26     23     19
D272V5, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              2               26
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED        4      2      2
  ZNF878 WILD-TYPE     44     51     16
D272V6, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              2               51
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        2      2      1      2      1
  ZNF878 WILD-TYPE     35     29     16     19     12
D272V7, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED        4      2      2
  ZNF878 WILD-TYPE     67     25     19
D272V8, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              2               25
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF878 MUTATED        3      0      1      0      1      2      1
  ZNF878 WILD-TYPE     15      8      9      8     35     23     11
D272V9, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF878 MUTATED        2      1      1      3      1      0
  ZNF878 WILD-TYPE     15     31     12     29     15      7
D272V10, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(273) Variable = AFF4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF4 MUTATED        1      2      1      0
  AFF4 WILD-TYPE     18     51     29     24
D273V1, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF4 MUTATED        1      1      2      0
  AFF4 WILD-TYPE     34     29     32     26
D273V2, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF4 MUTATED        0      1      1      1      1
  AFF4 WILD-TYPE     29     17     12      8     12
D273V3, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF4 MUTATED        0      1      2      1      0
  AFF4 WILD-TYPE     32     17     10      9     10
D273V4, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            0             32
  CLUS_2            1             17
  CLUS_3            2             10
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF4 MUTATED        2      0      1      1      0
  AFF4 WILD-TYPE     24     20     27     24     20
D273V5, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF4 MUTATED        3      1      0
  AFF4 WILD-TYPE     45     52     18
D273V6, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF4 MUTATED        2      1      0      1      0
  AFF4 WILD-TYPE     35     30     17     20     13
D273V7, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF4 MUTATED        2      2      0
  AFF4 WILD-TYPE     69     25     21
D273V8, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AFF4 MUTATED        1      0      0      0      2      1      0
  AFF4 WILD-TYPE     17      8     10      8     34     24     12
D273V9, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AFF4 MUTATED        0      1      0      3      0      0
  AFF4 WILD-TYPE     17     31     13     29     16      7
D273V10, multiclass
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(274) Variable = ZNF493 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF493 MUTATED        2      3      2      2
  ZNF493 WILD-TYPE     17     50     28     22
D274V1, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              3               50
  CLUS_3              2               28
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF493 MUTATED        3      3      2      1
  ZNF493 WILD-TYPE     32     27     32     25
D274V2, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              3               27
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF493 MUTATED        0      1      2      2      0
  ZNF493 WILD-TYPE     29     17     11      7     13
D274V3, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              2               11
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF493 MUTATED        1      1      2      1      0
  ZNF493 WILD-TYPE     31     17     10      9     10
D274V4, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              2               10
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF493 MUTATED        1      3      2      3      0
  ZNF493 WILD-TYPE     25     17     26     22     20
D274V5, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               17
  CLUS_3              2               26
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF493 MUTATED        4      3      2
  ZNF493 WILD-TYPE     44     50     16
D274V6, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              3               50
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF493 MUTATED        2      1      3      2      1
  ZNF493 WILD-TYPE     35     30     14     19     12
D274V7, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              3               14
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF493 MUTATED        4      3      2
  ZNF493 WILD-TYPE     67     24     19
D274V8, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              3               24
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF493 MUTATED        2      1      1      0      2      1      2
  ZNF493 WILD-TYPE     16      7      9      8     34     24     10
D274V9, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF493 MUTATED        3      1      0      4      0      1
  ZNF493 WILD-TYPE     14     31     13     28     16      6
D274V10, multiclass
        clus
vv       ZNF493 MUTATED ZNF493 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              4               28
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(275) Variable = HMGB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMGB1 MUTATED        0      1      3      1
  HMGB1 WILD-TYPE     19     52     27     23
D275V1, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMGB1 MUTATED        0      3      1      1
  HMGB1 WILD-TYPE     35     27     33     25
D275V2, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             3              27
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGB1 MUTATED        1      1      2      0      0
  HMGB1 WILD-TYPE     28     17     11      9     13
D275V3, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGB1 MUTATED        2      1      0      0      1
  HMGB1 WILD-TYPE     30     17     12     10      9
D275V4, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGB1 MUTATED        1      3      0      1      0
  HMGB1 WILD-TYPE     25     17     28     24     20
D275V5, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              17
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMGB1 MUTATED        2      0      3
  HMGB1 WILD-TYPE     46     53     15
D275V6, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             0              53
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGB1 MUTATED        1      0      1      0      3
  HMGB1 WILD-TYPE     36     31     16     21     10
D275V7, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             3              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMGB1 MUTATED        1      2      2
  HMGB1 WILD-TYPE     70     25     19
D275V8, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              25
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HMGB1 MUTATED        1      0      0      0      0      2      2
  HMGB1 WILD-TYPE     17      8     10      8     36     23     10
D275V9, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HMGB1 MUTATED        0      1      0      1      2      1
  HMGB1 WILD-TYPE     17     31     13     31     14      6
D275V10, multiclass
        clus
vv       HMGB1 MUTATED HMGB1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             2              14
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(276) Variable = NKAP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKAP MUTATED        0      1      2      1
  NKAP WILD-TYPE     19     52     28     23
D276V1, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKAP MUTATED        2      0      1      1
  NKAP WILD-TYPE     33     30     33     25
D276V2, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKAP MUTATED        1      1      0      1      0
  NKAP WILD-TYPE     28     17     13      8     13
D276V3, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKAP MUTATED        2      1      0      0      0
  NKAP WILD-TYPE     30     17     12     10     10
D276V4, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKAP MUTATED        0      0      2      1      1
  NKAP WILD-TYPE     26     20     26     24     19
D276V5, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKAP MUTATED        1      2      1
  NKAP WILD-TYPE     47     51     17
D276V6, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKAP MUTATED        1      1      0      1      1
  NKAP WILD-TYPE     36     30     17     20     12
D276V7, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKAP MUTATED        2      0      2
  NKAP WILD-TYPE     69     27     19
D276V8, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            2             69
  CLUS_2            0             27
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NKAP MUTATED        0      0      1      0      1      1      1
  NKAP WILD-TYPE     18      8      9      8     35     24     11
D276V9, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NKAP MUTATED        0      1      0      2      1      0
  NKAP WILD-TYPE     17     31     13     30     15      7
D276V10, multiclass
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(277) Variable = ZFP36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36 MUTATED        0      2      2      0
  ZFP36 WILD-TYPE     19     51     28     24
D277V1, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36 MUTATED        0      1      2      1
  ZFP36 WILD-TYPE     35     29     32     25
D277V2, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36 MUTATED        2      1      0      0      0
  ZFP36 WILD-TYPE     27     17     13      9     13
D277V3, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36 MUTATED        1      1      0      1      0
  ZFP36 WILD-TYPE     31     17     12      9     10
D277V4, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36 MUTATED        2      1      0      1      0
  ZFP36 WILD-TYPE     24     19     28     24     20
D277V5, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        1      2      1
  ZFP36 WILD-TYPE     47     51     17
D277V6, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36 MUTATED        0      1      0      2      1
  ZFP36 WILD-TYPE     37     30     17     19     12
D277V7, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        2      1      1
  ZFP36 WILD-TYPE     69     26     20
D277V8, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFP36 MUTATED        0      0      1      1      1      0      1
  ZFP36 WILD-TYPE     18      8      9      7     35     25     11
D277V9, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36 MUTATED        1      0      1      1      1      0
  ZFP36 WILD-TYPE     16     32     12     31     15      7
D277V10, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(278) Variable = GIT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIT1 MUTATED        1      1      2      1
  GIT1 WILD-TYPE     18     52     28     23
D278V1, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIT1 MUTATED        2      1      1      1
  GIT1 WILD-TYPE     33     29     33     25
D278V2, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIT1 MUTATED        1      1      0      1      0
  GIT1 WILD-TYPE     28     17     13      8     13
D278V3, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIT1 MUTATED        2      1      0      0      0
  GIT1 WILD-TYPE     30     17     12     10     10
D278V4, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIT1 MUTATED        0      1      1      3      0
  GIT1 WILD-TYPE     26     19     27     22     20
D278V5, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            3             22
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GIT1 MUTATED        3      1      1
  GIT1 WILD-TYPE     45     52     17
D278V6, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIT1 MUTATED        1      1      1      1      1
  GIT1 WILD-TYPE     36     30     16     20     12
D278V7, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GIT1 MUTATED        2      2      1
  GIT1 WILD-TYPE     69     25     20
D278V8, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GIT1 MUTATED        1      0      1      1      1      0      1
  GIT1 WILD-TYPE     17      8      9      7     35     25     11
D278V9, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIT1 MUTATED        1      1      0      3      0      0
  GIT1 WILD-TYPE     16     31     13     29     16      7
D278V10, multiclass
        clus
vv       GIT1 MUTATED GIT1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(279) Variable = RUNX1T1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1T1 MUTATED        0      2      3      0
  RUNX1T1 WILD-TYPE     19     51     27     24
D279V1, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               3                27
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1T1 MUTATED        3      0      2      0
  RUNX1T1 WILD-TYPE     32     30     32     26
D279V2, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                30
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX1T1 MUTATED        1      2      0      1      0
  RUNX1T1 WILD-TYPE     28     16     13      8     13
D279V3, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               2                16
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX1T1 MUTATED        3      1      0      0      0
  RUNX1T1 WILD-TYPE     29     17     12     10     10
D279V4, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX1T1 MUTATED        3      0      1      1      0
  RUNX1T1 WILD-TYPE     23     20     27     24     20
D279V5, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RUNX1T1 MUTATED        2      3      0
  RUNX1T1 WILD-TYPE     46     50     18
D279V6, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX1T1 MUTATED        2      1      0      2      0
  RUNX1T1 WILD-TYPE     35     30     17     19     13
D279V7, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RUNX1T1 MUTATED        5      0      0
  RUNX1T1 WILD-TYPE     66     27     21
D279V8, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               5                66
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNX1T1 MUTATED        0      1      1      0      1      1      0
  RUNX1T1 WILD-TYPE     18      7      9      8     35     24     12
D279V9, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUNX1T1 MUTATED        1      2      0      1      0      0
  RUNX1T1 WILD-TYPE     16     30     13     31     16      7
D279V10, multiclass
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(280) Variable = RP1L1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RP1L1 MUTATED        3      6      3      2
  RP1L1 WILD-TYPE     16     47     27     22
D280V1, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             6              47
  CLUS_3             3              27
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RP1L1 MUTATED        7      3      2      2
  RP1L1 WILD-TYPE     28     27     32     24
D280V2, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             7              28
  CLUS_2             3              27
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        5      1      1      2      1
  RP1L1 WILD-TYPE     24     17     12      7     12
D280V3, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             5              24
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        6      1      0      1      2
  RP1L1 WILD-TYPE     26     17     12      9      8
D280V4, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             6              26
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        4      1      1      5      3
  RP1L1 WILD-TYPE     22     19     27     20     17
D280V5, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             5              20
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RP1L1 MUTATED        6      8      0
  RP1L1 WILD-TYPE     42     45     18
D280V6, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             6              42
  CLUS_2             8              45
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        4      4      2      3      1
  RP1L1 WILD-TYPE     33     27     15     18     12
D280V7, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             4              27
  CLUS_3             2              15
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RP1L1 MUTATED       10      4      0
  RP1L1 WILD-TYPE     61     23     21
D280V8, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            10              61
  CLUS_2             4              23
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RP1L1 MUTATED        3      1      1      2      4      2      1
  RP1L1 WILD-TYPE     15      7      9      6     32     23     11
D280V9, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             4              32
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RP1L1 MUTATED        1      4      2      6      1      0
  RP1L1 WILD-TYPE     16     28     11     26     15      7
D280V10, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             4              28
  CLUS_3             2              11
  CLUS_4             6              26
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(281) Variable = AP2A2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP2A2 MUTATED        0      1      3      1
  AP2A2 WILD-TYPE     19     52     27     23
D281V1, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP2A2 MUTATED        1      1      2      1
  AP2A2 WILD-TYPE     34     29     32     25
D281V2, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        1      1      0      1      1
  AP2A2 WILD-TYPE     28     17     13      8     12
D281V3, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        1      1      0      1      1
  AP2A2 WILD-TYPE     31     17     12      9      9
D281V4, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        1      1      1      1      1
  AP2A2 WILD-TYPE     25     19     27     24     19
D281V5, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP2A2 MUTATED        1      2      2
  AP2A2 WILD-TYPE     47     51     16
D281V6, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        1      1      0      2      1
  AP2A2 WILD-TYPE     36     30     17     19     12
D281V7, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP2A2 MUTATED        3      1      1
  AP2A2 WILD-TYPE     68     26     20
D281V8, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AP2A2 MUTATED        0      0      1      0      2      1      1
  AP2A2 WILD-TYPE     18      8      9      8     34     24     11
D281V9, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AP2A2 MUTATED        0      1      1      1      1      1
  AP2A2 WILD-TYPE     17     31     12     31     15      6
D281V10, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(282) Variable = EIF5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        1      3      1      0
  EIF5B WILD-TYPE     18     50     29     24
D282V1, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        3      0      2      0
  EIF5B WILD-TYPE     32     30     32     26
D282V2, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        1      0      0      1      1
  EIF5B WILD-TYPE     28     18     13      8     12
D282V3, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        2      0      1      0      0
  EIF5B WILD-TYPE     30     18     11     10     10
D282V4, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        1      1      1      2      0
  EIF5B WILD-TYPE     25     19     27     23     20
D282V5, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        3      2      0
  EIF5B WILD-TYPE     45     51     18
D282V6, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        2      0      1      1      1
  EIF5B WILD-TYPE     35     31     16     20     12
D282V7, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        3      1      1
  EIF5B WILD-TYPE     68     26     20
D282V8, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF5B MUTATED        1      0      1      0      2      1      0
  EIF5B WILD-TYPE     17      8      9      8     34     24     12
D282V9, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF5B MUTATED        0      2      0      2      1      0
  EIF5B WILD-TYPE     17     30     13     30     15      7
D282V10, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(283) Variable = WHSC1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHSC1L1 MUTATED        2      2      2      0
  WHSC1L1 WILD-TYPE     17     51     28     24
D283V1, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               2                51
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHSC1L1 MUTATED        0      3      3      0
  WHSC1L1 WILD-TYPE     35     27     31     26
D283V2, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               0                35
  CLUS_2               3                27
  CLUS_3               3                31
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        2      1      0      0      0
  WHSC1L1 WILD-TYPE     27     17     13      9     13
D283V3, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        2      1      0      0      0
  WHSC1L1 WILD-TYPE     30     17     12     10     10
D283V4, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        2      1      1      2      0
  WHSC1L1 WILD-TYPE     24     19     27     23     20
D283V5, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WHSC1L1 MUTATED        3      2      1
  WHSC1L1 WILD-TYPE     45     51     17
D283V6, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               2                51
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        2      1      1      2      0
  WHSC1L1 WILD-TYPE     35     30     16     19     13
D283V7, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WHSC1L1 MUTATED        3      2      1
  WHSC1L1 WILD-TYPE     68     25     20
D283V8, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               2                25
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WHSC1L1 MUTATED        0      0      1      1      3      0      1
  WHSC1L1 WILD-TYPE     18      8      9      7     33     25     11
D283V9, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WHSC1L1 MUTATED        1      2      0      2      0      1
  WHSC1L1 WILD-TYPE     16     30     13     30     16      6
D283V10, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(284) Variable = BRCA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED        1      3      3      0
  BRCA2 WILD-TYPE     18     50     27     24
D284V1, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED        2      1      3      1
  BRCA2 WILD-TYPE     33     29     31     25
D284V2, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        1      0      0      2      1
  BRCA2 WILD-TYPE     28     18     13      7     12
D284V3, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        1      0      0      2      1
  BRCA2 WILD-TYPE     31     18     12      8      9
D284V4, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             2               8
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        3      1      0      2      1
  BRCA2 WILD-TYPE     23     19     28     23     19
D284V5, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED        2      3      2
  BRCA2 WILD-TYPE     46     50     16
D284V6, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        2      1      1      3      0
  BRCA2 WILD-TYPE     35     30     16     18     13
D284V7, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED        5      0      2
  BRCA2 WILD-TYPE     66     27     19
D284V8, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRCA2 MUTATED        0      0      1      0      4      1      1
  BRCA2 WILD-TYPE     18      8      9      8     32     24     11
D284V9, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRCA2 MUTATED        1      1      1      2      1      1
  BRCA2 WILD-TYPE     16     31     12     30     15      6
D284V10, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(285) Variable = E2F8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F8 MUTATED        0      3      1      0
  E2F8 WILD-TYPE     19     50     29     24
D285V1, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F8 MUTATED        4      0      0      0
  E2F8 WILD-TYPE     31     30     34     26
D285V2, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            0             30
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F8 MUTATED        2      1      0      1      0
  E2F8 WILD-TYPE     27     17     13      8     13
D285V3, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F8 MUTATED        3      1      0      0      0
  E2F8 WILD-TYPE     29     17     12     10     10
D285V4, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F8 MUTATED        1      2      0      1      0
  E2F8 WILD-TYPE     25     18     28     24     20
D285V5, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F8 MUTATED        3      1      0
  E2F8 WILD-TYPE     45     52     18
D285V6, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F8 MUTATED        1      0      0      2      1
  E2F8 WILD-TYPE     36     31     17     19     12
D285V7, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F8 MUTATED        3      0      1
  E2F8 WILD-TYPE     68     27     20
D285V8, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  E2F8 MUTATED        1      0      1      0      1      1      0
  E2F8 WILD-TYPE     17      8      9      8     35     24     12
D285V9, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  E2F8 MUTATED        0      1      0      2      1      0
  E2F8 WILD-TYPE     17     31     13     30     15      7
D285V10, multiclass
        clus
vv       E2F8 MUTATED E2F8 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(286) Variable = SPRR4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPRR4 MUTATED        0      2      1      1
  SPRR4 WILD-TYPE     19     51     29     23
D286V1, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPRR4 MUTATED        1      1      1      1
  SPRR4 WILD-TYPE     34     29     33     25
D286V2, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPRR4 MUTATED        2      1      0      0      0
  SPRR4 WILD-TYPE     27     17     13      9     13
D286V3, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPRR4 MUTATED        2      1      0      0      0
  SPRR4 WILD-TYPE     30     17     12     10     10
D286V4, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPRR4 MUTATED        2      0      0      1      1
  SPRR4 WILD-TYPE     24     20     28     24     19
D286V5, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPRR4 MUTATED        2      2      0
  SPRR4 WILD-TYPE     46     51     18
D286V6, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPRR4 MUTATED        2      1      0      1      0
  SPRR4 WILD-TYPE     35     30     17     20     13
D286V7, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPRR4 MUTATED        3      1      0
  SPRR4 WILD-TYPE     68     26     21
D286V8, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPRR4 MUTATED        1      0      1      0      1      1      0
  SPRR4 WILD-TYPE     17      8      9      8     35     24     12
D286V9, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPRR4 MUTATED        0      2      1      1      0      0
  SPRR4 WILD-TYPE     17     30     12     31     16      7
D286V10, multiclass
        clus
vv       SPRR4 MUTATED SPRR4 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(287) Variable = ZMIZ2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ2 MUTATED        1      3      1      1
  ZMIZ2 WILD-TYPE     18     50     29     23
D287V1, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ2 MUTATED        3      0      2      0
  ZMIZ2 WILD-TYPE     32     30     32     26
D287V2, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ2 MUTATED        3      1      0      2      0
  ZMIZ2 WILD-TYPE     26     17     13      7     13
D287V3, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ2 MUTATED        4      1      0      1      0
  ZMIZ2 WILD-TYPE     28     17     12      9     10
D287V4, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ2 MUTATED        2      0      2      1      0
  ZMIZ2 WILD-TYPE     24     20     26     24     20
D287V5, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        3      2      0
  ZMIZ2 WILD-TYPE     45     51     18
D287V6, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ2 MUTATED        3      0      0      2      0
  ZMIZ2 WILD-TYPE     34     31     17     19     13
D287V7, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ2 MUTATED        4      1      0
  ZMIZ2 WILD-TYPE     67     26     21
D287V8, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMIZ2 MUTATED        1      0      1      0      3      0      0
  ZMIZ2 WILD-TYPE     17      8      9      8     33     25     12
D287V9, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMIZ2 MUTATED        1      2      0      2      0      0
  ZMIZ2 WILD-TYPE     16     30     13     30     16      7
D287V10, multiclass
        clus
vv       ZMIZ2 MUTATED ZMIZ2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(288) Variable = OR5H1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        0      2      3      2
  OR5H1 WILD-TYPE     19     51     27     22
D288V1, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             3              27
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        5      1      1      0
  OR5H1 WILD-TYPE     30     29     33     26
D288V2, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5H1 MUTATED        3      1      0      2      0
  OR5H1 WILD-TYPE     26     17     13      7     13
D288V3, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5H1 MUTATED        5      0      0      1      0
  OR5H1 WILD-TYPE     27     18     12      9     10
D288V4, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5H1 MUTATED        1      0      2      3      1
  OR5H1 WILD-TYPE     25     20     26     22     19
D288V5, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5H1 MUTATED        3      4      0
  OR5H1 WILD-TYPE     45     49     18
D288V6, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5H1 MUTATED        3      1      2      1      0
  OR5H1 WILD-TYPE     34     30     15     20     13
D288V7, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5H1 MUTATED        5      2      0
  OR5H1 WILD-TYPE     66     25     21
D288V8, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5H1 MUTATED        2      1      1      0      2      1      0
  OR5H1 WILD-TYPE     16      7      9      8     34     24     12
D288V9, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR5H1 MUTATED        0      3      1      3      0      0
  OR5H1 WILD-TYPE     17     29     12     29     16      7
D288V10, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(289) Variable = SMYD5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMYD5 MUTATED        1      3      1      0
  SMYD5 WILD-TYPE     18     50     29     24
D289V1, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMYD5 MUTATED        3      0      2      0
  SMYD5 WILD-TYPE     32     30     32     26
D289V2, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMYD5 MUTATED        2      1      0      1      0
  SMYD5 WILD-TYPE     27     17     13      8     13
D289V3, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMYD5 MUTATED        3      1      0      0      0
  SMYD5 WILD-TYPE     29     17     12     10     10
D289V4, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMYD5 MUTATED        2      0      2      1      0
  SMYD5 WILD-TYPE     24     20     26     24     20
D289V5, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMYD5 MUTATED        1      4      0
  SMYD5 WILD-TYPE     47     49     18
D289V6, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMYD5 MUTATED        4      0      0      1      0
  SMYD5 WILD-TYPE     33     31     17     20     13
D289V7, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMYD5 MUTATED        5      0      0
  SMYD5 WILD-TYPE     66     27     21
D289V8, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMYD5 MUTATED        0      1      1      0      2      1      0
  SMYD5 WILD-TYPE     18      7      9      8     34     24     12
D289V9, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMYD5 MUTATED        1      3      0      1      0      0
  SMYD5 WILD-TYPE     16     29     13     31     16      7
D289V10, multiclass
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(290) Variable = NIPA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        1      2      0      0
  NIPA2 WILD-TYPE     18     51     30     24
D290V1, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        1      0      2      0
  NIPA2 WILD-TYPE     34     30     32     26
D290V2, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPA2 MUTATED        3      0      0      0      0
  NIPA2 WILD-TYPE     26     18     13      9     13
D290V3, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPA2 MUTATED        3      0      0      0      0
  NIPA2 WILD-TYPE     29     18     12     10     10
D290V4, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPA2 MUTATED        1      0      2      0      0
  NIPA2 WILD-TYPE     25     20     26     25     20
D290V5, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             0              25
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPA2 MUTATED        0      3      0
  NIPA2 WILD-TYPE     48     50     18
D290V6, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPA2 MUTATED        3      0      0      0      0
  NIPA2 WILD-TYPE     34     31     17     21     13
D290V7, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPA2 MUTATED        3      0      0
  NIPA2 WILD-TYPE     68     27     21
D290V8, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPA2 MUTATED        0      0      0      0      3      0      0
  NIPA2 WILD-TYPE     18      8     10      8     33     25     12
D290V9, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NIPA2 MUTATED        0      3      0      0      0      0
  NIPA2 WILD-TYPE     17     29     13     32     16      7
D290V10, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             0              32
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(291) Variable = C7ORF16 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF16 MUTATED        1      2      1      0
  C7ORF16 WILD-TYPE     18     51     29     24
D291V1, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF16 MUTATED        0      2      1      1
  C7ORF16 WILD-TYPE     35     28     33     25
D291V2, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               0                35
  CLUS_2               2                28
  CLUS_3               1                33
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF16 MUTATED        1      0      1      0      0
  C7ORF16 WILD-TYPE     28     18     12      9     13
D291V3, multiclass
[1] "Remove cluster labels:" "C7ORF16 MUTATED"       
clus
  C7ORF16 MUTATED C7ORF16 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF16 MUTATED        1      0      1      0      0
  C7ORF16 WILD-TYPE     31     18     11     10     10
D291V4, multiclass
[1] "Remove cluster labels:" "C7ORF16 MUTATED"       
clus
  C7ORF16 MUTATED C7ORF16 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" "C7ORF16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF16 MUTATED        1      2      0      0      0
  C7ORF16 WILD-TYPE     25     18     28     25     20
D291V5, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                18
  CLUS_3               0                28
  CLUS_4               0                25
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF16 MUTATED        0      1      2
  C7ORF16 WILD-TYPE     48     52     16
D291V6, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               0                48
  CLUS_2               1                52
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF16 MUTATED        0      0      0      2      1
  C7ORF16 WILD-TYPE     37     31     17     19     12
D291V7, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF16 MUTATED        1      0      2
  C7ORF16 WILD-TYPE     70     27     19
D291V8, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               0                27
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C7ORF16 MUTATED        0      0      1      0      0      0      2
  C7ORF16 WILD-TYPE     18      8      9      8     36     25     10
D291V9, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               2                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF16 MUTATED        1      0      0      0      1      1
  C7ORF16 WILD-TYPE     16     32     13     32     15      6
D291V10, multiclass
        clus
vv       C7ORF16 MUTATED C7ORF16 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               0                32
  CLUS_5               1                15
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(292) Variable = DOCK6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK6 MUTATED        0      1      2      2
  DOCK6 WILD-TYPE     19     52     28     22
D292V1, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK6 MUTATED        2      0      1      2
  DOCK6 WILD-TYPE     33     30     33     24
D292V2, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK6 MUTATED        2      0      1      1      0
  DOCK6 WILD-TYPE     27     18     12      8     13
D292V3, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK6 MUTATED        3      0      0      0      1
  DOCK6 WILD-TYPE     29     18     12     10      9
D292V4, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK6 MUTATED        1      1      0      1      2
  DOCK6 WILD-TYPE     25     19     28     24     18
D292V5, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK6 MUTATED        1      4      0
  DOCK6 WILD-TYPE     47     49     18
D292V6, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK6 MUTATED        2      2      0      1      0
  DOCK6 WILD-TYPE     35     29     17     20     13
D292V7, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK6 MUTATED        5      0      0
  DOCK6 WILD-TYPE     66     27     21
D292V8, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOCK6 MUTATED        0      0      1      0      1      3      0
  DOCK6 WILD-TYPE     18      8      9      8     35     22     12
D292V9, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DOCK6 MUTATED        0      3      0      1      1      0
  DOCK6 WILD-TYPE     17     29     13     31     15      7
D292V10, multiclass
        clus
vv       DOCK6 MUTATED DOCK6 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(293) Variable = OR10A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10A2 MUTATED        0      1      2      1
  OR10A2 WILD-TYPE     19     52     28     23
D293V1, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10A2 MUTATED        2      0      1      1
  OR10A2 WILD-TYPE     33     30     33     25
D293V2, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A2 MUTATED        2      1      0      0      0
  OR10A2 WILD-TYPE     27     17     13      9     13
D293V3, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A2 MUTATED        1      1      0      1      0
  OR10A2 WILD-TYPE     31     17     12      9     10
D293V4, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A2 MUTATED        2      0      0      0      2
  OR10A2 WILD-TYPE     24     20     28     25     18
D293V5, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              0               25
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        0      4      0
  OR10A2 WILD-TYPE     48     49     18
D293V6, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               48
  CLUS_2              4               49
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10A2 MUTATED        0      2      0      2      0
  OR10A2 WILD-TYPE     37     29     17     19     13
D293V7, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        4      0      0
  OR10A2 WILD-TYPE     67     27     21
D293V8, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR10A2 MUTATED        0      0      0      1      1      1      0
  OR10A2 WILD-TYPE     18      8     10      7     35     24     12
D293V9, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR10A2 MUTATED        0      0      3      0      0      0
  OR10A2 WILD-TYPE     17     32     10     32     16      7
D293V10, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              3               10
  CLUS_4              0               32
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(294) Variable = KDM2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2A MUTATED        0      2      1      2
  KDM2A WILD-TYPE     19     51     29     22
D294V1, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2A MUTATED        2      1      2      0
  KDM2A WILD-TYPE     33     29     32     26
D294V2, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM2A MUTATED        2      1      0      1      1
  KDM2A WILD-TYPE     27     17     13      8     12
D294V3, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM2A MUTATED        3      1      0      0      1
  KDM2A WILD-TYPE     29     17     12     10      9
D294V4, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM2A MUTATED        0      0      2      3      0
  KDM2A WILD-TYPE     26     20     26     22     20
D294V5, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM2A MUTATED        4      1      0
  KDM2A WILD-TYPE     44     52     18
D294V6, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             4              44
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM2A MUTATED        2      0      1      2      0
  KDM2A WILD-TYPE     35     31     16     19     13
D294V7, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM2A MUTATED        4      1      0
  KDM2A WILD-TYPE     67     26     21
D294V8, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM2A MUTATED        1      0      2      0      2      0      0
  KDM2A WILD-TYPE     17      8      8      8     34     25     12
D294V9, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM2A MUTATED        0      2      0      3      0      0
  KDM2A WILD-TYPE     17     30     13     29     16      7
D294V10, multiclass
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(295) Variable = RBM45 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM45 MUTATED        0      2      3      0
  RBM45 WILD-TYPE     19     51     27     24
D295V1, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM45 MUTATED        2      1      2      0
  RBM45 WILD-TYPE     33     29     32     26
D295V2, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM45 MUTATED        2      0      0      1      1
  RBM45 WILD-TYPE     27     18     13      8     12
D295V3, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM45 MUTATED        3      0      0      0      1
  RBM45 WILD-TYPE     29     18     12     10      9
D295V4, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM45 MUTATED        1      0      2      2      0
  RBM45 WILD-TYPE     25     20     26     23     20
D295V5, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM45 MUTATED        4      0      1
  RBM45 WILD-TYPE     44     53     17
D295V6, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             0              53
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM45 MUTATED        2      1      1      1      0
  RBM45 WILD-TYPE     35     30     16     20     13
D295V7, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM45 MUTATED        3      1      1
  RBM45 WILD-TYPE     68     26     20
D295V8, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM45 MUTATED        0      0      2      0      2      1      0
  RBM45 WILD-TYPE     18      8      8      8     34     24     12
D295V9, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM45 MUTATED        1      1      0      2      1      0
  RBM45 WILD-TYPE     16     31     13     30     15      7
D295V10, multiclass
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(296) Variable = PHRF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHRF1 MUTATED        1      0      3      0
  PHRF1 WILD-TYPE     18     53     27     24
D296V1, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHRF1 MUTATED        2      1      0      1
  PHRF1 WILD-TYPE     33     29     34     25
D296V2, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHRF1 MUTATED        1      0      0      1      0
  PHRF1 WILD-TYPE     28     18     13      8     13
D296V3, multiclass
[1] "Remove cluster labels:" "PHRF1 MUTATED"         
clus
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A78T 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHRF1 MUTATED        2      0      0      0      0
  PHRF1 WILD-TYPE     30     18     12     10     10
D296V4, multiclass
[1] "Remove cluster labels:" "PHRF1 MUTATED"         
clus
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A78T 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHRF1 MUTATED        0      1      1      1      1
  PHRF1 WILD-TYPE     26     19     27     24     19
D296V5, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHRF1 MUTATED        1      1      2
  PHRF1 WILD-TYPE     47     52     16
D296V6, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHRF1 MUTATED        0      2      0      2      0
  PHRF1 WILD-TYPE     37     29     17     19     13
D296V7, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHRF1 MUTATED        2      0      2
  PHRF1 WILD-TYPE     69     27     19
D296V8, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHRF1 MUTATED        0      0      1      1      0      1      1
  PHRF1 WILD-TYPE     18      8      9      7     36     24     11
D296V9, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHRF1 MUTATED        0      0      1      1      1      1
  PHRF1 WILD-TYPE     17     32     12     31     15      6
D296V10, multiclass
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(297) Variable = KCND3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCND3 MUTATED        1      2      2      0
  KCND3 WILD-TYPE     18     51     28     24
D297V1, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCND3 MUTATED        2      1      1      1
  KCND3 WILD-TYPE     33     29     33     25
D297V2, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCND3 MUTATED        2      1      0      1      0
  KCND3 WILD-TYPE     27     17     13      8     13
D297V3, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCND3 MUTATED        2      1      0      1      0
  KCND3 WILD-TYPE     30     17     12      9     10
D297V4, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCND3 MUTATED        2      0      0      3      0
  KCND3 WILD-TYPE     24     20     28     22     20
D297V5, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCND3 MUTATED        3      2      0
  KCND3 WILD-TYPE     45     51     18
D297V6, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCND3 MUTATED        1      1      1      2      0
  KCND3 WILD-TYPE     36     30     16     19     13
D297V7, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCND3 MUTATED        3      2      0
  KCND3 WILD-TYPE     68     25     21
D297V8, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCND3 MUTATED        0      0      2      0      1      1      1
  KCND3 WILD-TYPE     18      8      8      8     35     24     11
D297V9, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCND3 MUTATED        0      1      1      3      0      0
  KCND3 WILD-TYPE     17     31     12     29     16      7
D297V10, multiclass
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(298) Variable = CD1D MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD1D MUTATED        0      3      2      1
  CD1D WILD-TYPE     19     50     28     23
D298V1, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD1D MUTATED        3      0      2      1
  CD1D WILD-TYPE     32     30     32     25
D298V2, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1D MUTATED        4      1      0      1      0
  CD1D WILD-TYPE     25     17     13      8     13
D298V3, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            4             25
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1D MUTATED        5      1      0      0      0
  CD1D WILD-TYPE     27     17     12     10     10
D298V4, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            5             27
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1D MUTATED        1      2      1      1      1
  CD1D WILD-TYPE     25     18     27     24     19
D298V5, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             18
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD1D MUTATED        2      3      1
  CD1D WILD-TYPE     46     50     17
D298V6, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1D MUTATED        3      1      0      2      0
  CD1D WILD-TYPE     34     30     17     19     13
D298V7, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD1D MUTATED        5      0      1
  CD1D WILD-TYPE     66     27     20
D298V8, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            5             66
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD1D MUTATED        1      0      1      0      2      2      0
  CD1D WILD-TYPE     17      8      9      8     34     23     12
D298V9, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD1D MUTATED        0      3      0      2      1      0
  CD1D WILD-TYPE     17     29     13     30     15      7
D298V10, multiclass
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(299) Variable = PHF21A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED        1      1      1      1
  PHF21A WILD-TYPE     18     52     29     23
D299V1, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED        1      1      2      0
  PHF21A WILD-TYPE     34     29     32     26
D299V2, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF21A MUTATED        0      1      1      1      0
  PHF21A WILD-TYPE     29     17     12      8     13
D299V3, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF21A MUTATED        2      1      0      0      0
  PHF21A WILD-TYPE     30     17     12     10     10
D299V4, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF21A MUTATED        1      0      1      2      0
  PHF21A WILD-TYPE     25     20     27     23     20
D299V5, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHF21A MUTATED        2      2      0
  PHF21A WILD-TYPE     46     51     18
D299V6, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF21A MUTATED        1      1      1      1      0
  PHF21A WILD-TYPE     36     30     16     20     13
D299V7, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHF21A MUTATED        3      1      0
  PHF21A WILD-TYPE     68     26     21
D299V8, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF21A MUTATED        0      0      1      0      2      1      0
  PHF21A WILD-TYPE     18      8      9      8     34     24     12
D299V9, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF21A MUTATED        0      2      0      2      0      0
  PHF21A WILD-TYPE     17     30     13     30     16      7
D299V10, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(300) Variable = STEAP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STEAP2 MUTATED        0      2      1      2
  STEAP2 WILD-TYPE     19     51     29     22
D300V1, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STEAP2 MUTATED        1      1      3      0
  STEAP2 WILD-TYPE     34     29     31     26
D300V2, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              3               31
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        1      0      1      1      1
  STEAP2 WILD-TYPE     28     18     12      8     12
D300V3, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        2      0      1      0      1
  STEAP2 WILD-TYPE     30     18     11     10      9
D300V4, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        0      2      2      1      0
  STEAP2 WILD-TYPE     26     18     26     24     20
D300V5, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP2 MUTATED        2      2      1
  STEAP2 WILD-TYPE     46     51     17
D300V6, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        2      1      0      2      0
  STEAP2 WILD-TYPE     35     30     17     19     13
D300V7, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP2 MUTATED        4      0      1
  STEAP2 WILD-TYPE     67     27     20
D300V8, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STEAP2 MUTATED        0      0      1      0      1      2      1
  STEAP2 WILD-TYPE     18      8      9      8     35     23     11
D300V9, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STEAP2 MUTATED        0      3      0      1      0      1
  STEAP2 WILD-TYPE     17     29     13     31     16      6
D300V10, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(301) Variable = SALL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SALL1 MUTATED        4      1      3      2
  SALL1 WILD-TYPE     15     52     27     22
D301V1, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             4              15
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SALL1 MUTATED        3      3      2      1
  SALL1 WILD-TYPE     32     27     32     25
D301V2, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              27
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL1 MUTATED        1      4      0      2      0
  SALL1 WILD-TYPE     28     14     13      7     13
D301V3, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             4              14
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL1 MUTATED        2      4      0      1      0
  SALL1 WILD-TYPE     30     14     12      9     10
D301V4, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             4              14
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL1 MUTATED        2      1      1      3      2
  SALL1 WILD-TYPE     24     19     27     22     18
D301V5, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SALL1 MUTATED        4      5      0
  SALL1 WILD-TYPE     44     48     18
D301V6, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL1 MUTATED        1      4      0      3      1
  SALL1 WILD-TYPE     36     27     17     18     12
D301V7, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             4              27
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SALL1 MUTATED        6      3      0
  SALL1 WILD-TYPE     65     24     21
D301V8, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SALL1 MUTATED        1      0      1      3      2      1      0
  SALL1 WILD-TYPE     17      8      9      5     34     24     12
D301V9, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             3               5
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SALL1 MUTATED        0      2      3      3      0      0
  SALL1 WILD-TYPE     17     30     10     29     16      7
D301V10, multiclass
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             3              10
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(302) Variable = DSTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSTN MUTATED        2      1      0      0
  DSTN WILD-TYPE     17     52     30     24
D302V1, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            0             30
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSTN MUTATED        2      0      1      0
  DSTN WILD-TYPE     33     30     33     26
D302V2, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        2      0      1      0      0
  DSTN WILD-TYPE     27     18     12      9     13
D302V3, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            0              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        2      0      1      0      0
  DSTN WILD-TYPE     30     18     11     10     10
D302V4, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        1      0      1      1      0
  DSTN WILD-TYPE     25     20     27     24     20
D302V5, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSTN MUTATED        1      2      0
  DSTN WILD-TYPE     47     51     18
D302V6, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        1      1      0      0      1
  DSTN WILD-TYPE     36     30     17     21     12
D302V7, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            0             21
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSTN MUTATED        3      0      0
  DSTN WILD-TYPE     68     27     21
D302V8, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DSTN MUTATED        1      1      0      0      1      0      0
  DSTN WILD-TYPE     17      7     10      8     35     25     12
D302V9, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DSTN MUTATED        2      0      0      1      0      0
  DSTN WILD-TYPE     15     32     13     31     16      7
D302V10, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(303) Variable = C6ORF154 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF154 MUTATED        2      2      0      0
  C6ORF154 WILD-TYPE     17     51     30     24
D303V1, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 51
  CLUS_3                0                 30
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF154 MUTATED        1      0      3      0
  C6ORF154 WILD-TYPE     34     30     31     26
D303V2, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                0                 30
  CLUS_3                3                 31
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF154 MUTATED        0      0      0      0      1
  C6ORF154 WILD-TYPE     29     18     13      9     12
D303V3, multiclass
[1] "Remove cluster labels:" "C6ORF154 MUTATED"      
clus
  C6ORF154 MUTATED C6ORF154 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A7LX 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-A7M4         TCGA-IB-AAUM         TCGA-IB-AAUN 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-AAUO         TCGA-IB-AAUP         TCGA-IB-AAUS 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-S4-A8RO 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUH 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-XD-AAUI         TCGA-XN-A8T5         TCGA-YB-A89D 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF154 MUTATED        0      0      1      0      0
  C6ORF154 WILD-TYPE     32     18     11     10     10
D303V4, multiclass
[1] "Remove cluster labels:" "C6ORF154 MUTATED"      
clus
  C6ORF154 MUTATED C6ORF154 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A7LX 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-A7M4         TCGA-IB-AAUM         TCGA-IB-AAUN 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-AAUO         TCGA-IB-AAUP         TCGA-IB-AAUS 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-S4-A8RO 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUH 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-XD-AAUI         TCGA-XN-A8T5         TCGA-YB-A89D 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" "C6ORF154 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF154 MUTATED        0      0      4      0      0
  C6ORF154 WILD-TYPE     26     20     24     25     20
D303V5, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                0                 20
  CLUS_3                4                 24
  CLUS_4                0                 25
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF154 MUTATED        1      3      0
  C6ORF154 WILD-TYPE     47     50     18
D303V6, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                3                 50
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF154 MUTATED        1      1      0      1      1
  C6ORF154 WILD-TYPE     36     30     17     20     12
D303V7, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                1                 30
  CLUS_3                0                 17
  CLUS_4                1                 20
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF154 MUTATED        3      0      1
  C6ORF154 WILD-TYPE     68     27     20
D303V8, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                0                 27
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF154 MUTATED        0      1      0      0      2      0      1
  C6ORF154 WILD-TYPE     18      7     10      8     34     25     11
D303V9, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                  7
  CLUS_3                0                 10
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                0                 25
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C6ORF154 MUTATED        0      3      0      1      0      0
  C6ORF154 WILD-TYPE     17     29     13     31     16      7
D303V10, multiclass
        clus
vv       C6ORF154 MUTATED C6ORF154 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                3                 29
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(304) Variable = TDRD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD6 MUTATED        1      3      3      1
  TDRD6 WILD-TYPE     18     50     27     23
D304V1, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD6 MUTATED        3      2      2      1
  TDRD6 WILD-TYPE     32     28     32     25
D304V2, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDRD6 MUTATED        1      0      2      2      1
  TDRD6 WILD-TYPE     28     18     11      7     12
D304V3, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDRD6 MUTATED        2      0      0      1      3
  TDRD6 WILD-TYPE     30     18     12      9      7
D304V4, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             3               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDRD6 MUTATED        1      1      2      3      1
  TDRD6 WILD-TYPE     25     19     26     22     19
D304V5, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD6 MUTATED        5      1      2
  TDRD6 WILD-TYPE     43     52     16
D304V6, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDRD6 MUTATED        3      1      1      2      1
  TDRD6 WILD-TYPE     34     30     16     19     12
D304V7, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD6 MUTATED        4      2      2
  TDRD6 WILD-TYPE     67     25     19
D304V8, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TDRD6 MUTATED        1      0      1      0      4      2      0
  TDRD6 WILD-TYPE     17      8      9      8     32     23     12
D304V9, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TDRD6 MUTATED        1      2      0      3      2      0
  TDRD6 WILD-TYPE     16     30     13     29     14      7
D304V10, multiclass
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(305) Variable = SIGLEC11 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC11 MUTATED        2      2      1      0
  SIGLEC11 WILD-TYPE     17     51     29     24
D305V1, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 51
  CLUS_3                1                 29
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC11 MUTATED        0      2      2      1
  SIGLEC11 WILD-TYPE     35     28     32     25
D305V2, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                0                 35
  CLUS_2                2                 28
  CLUS_3                2                 32
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC11 MUTATED        2      0      2      0      0
  SIGLEC11 WILD-TYPE     27     18     11      9     13
D305V3, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                0                 18
  CLUS_3                2                 11
  CLUS_4                0                  9
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC11 MUTATED        2      0      2      0      0
  SIGLEC11 WILD-TYPE     30     18     10     10     10
D305V4, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                0                 18
  CLUS_3                2                 10
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC11 MUTATED        0      1      2      1      1
  SIGLEC11 WILD-TYPE     26     19     26     24     19
D305V5, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 19
  CLUS_3                2                 26
  CLUS_4                1                 24
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC11 MUTATED        2      2      1
  SIGLEC11 WILD-TYPE     46     51     17
D305V6, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                2                 51
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC11 MUTATED        2      2      1      0      0
  SIGLEC11 WILD-TYPE     35     29     16     21     13
D305V7, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                2                 29
  CLUS_3                1                 16
  CLUS_4                0                 21
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC11 MUTATED        3      1      1
  SIGLEC11 WILD-TYPE     68     26     20
D305V8, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIGLEC11 MUTATED        1      2      0      0      0      1      1
  SIGLEC11 WILD-TYPE     17      6     10      8     36     24     11
D305V9, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                  6
  CLUS_3                0                 10
  CLUS_4                0                  8
  CLUS_5                0                 36
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SIGLEC11 MUTATED        2      1      0      1      1      0
  SIGLEC11 WILD-TYPE     15     31     13     31     15      7
D305V10, multiclass
        clus
vv       SIGLEC11 MUTATED SIGLEC11 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(306) Variable = UGP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGP2 MUTATED        2      1      1      1
  UGP2 WILD-TYPE     17     52     29     23
D306V1, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGP2 MUTATED        3      0      1      1
  UGP2 WILD-TYPE     32     30     33     25
D306V2, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        2      0      0      1      0
  UGP2 WILD-TYPE     27     18     13      8     13
D306V3, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        3      0      0      0      0
  UGP2 WILD-TYPE     29     18     12     10     10
D306V4, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        0      0      1      1      2
  UGP2 WILD-TYPE     26     20     27     24     18
D306V5, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UGP2 MUTATED        1      2      1
  UGP2 WILD-TYPE     47     51     17
D306V6, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        1      1      0      1      1
  UGP2 WILD-TYPE     36     30     17     20     12
D306V7, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UGP2 MUTATED        3      0      1
  UGP2 WILD-TYPE     68     27     20
D306V8, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UGP2 MUTATED        0      0      1      2      1      0      0
  UGP2 WILD-TYPE     18      8      9      6     35     25     12
D306V9, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            2              6
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UGP2 MUTATED        0      1      1      1      1      0
  UGP2 WILD-TYPE     17     31     12     31     15      7
D306V10, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(307) Variable = SCD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD MUTATED        0      0      3      1
  SCD WILD-TYPE     19     53     27     23
D307V1, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           0            19
  CLUS_2           0            53
  CLUS_3           3            27
  CLUS_4           1            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD MUTATED        3      1      0      0
  SCD WILD-TYPE     32     29     34     26
D307V2, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           3            32
  CLUS_2           1            29
  CLUS_3           0            34
  CLUS_4           0            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCD MUTATED        1      0      0      1      0
  SCD WILD-TYPE     28     18     13      8     13
D307V3, multiclass
[1] "Remove cluster labels:" "SCD MUTATED"           
clus
  SCD MUTATED SCD WILD-TYPE 
            2            80 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6    TCGA-FZ-5919 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5922    TCGA-FZ-5923    TCGA-FZ-5924 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FZ-5926    TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925    TCGA-IB-7652 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCD MUTATED        1      0      0      1      0
  SCD WILD-TYPE     31     18     12      9     10
D307V4, multiclass
[1] "Remove cluster labels:" "SCD MUTATED"           
clus
  SCD MUTATED SCD WILD-TYPE 
            2            80 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6    TCGA-FZ-5919 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5922    TCGA-FZ-5923    TCGA-FZ-5924 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FZ-5926    TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925    TCGA-IB-7652 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCD MUTATED        2      1      0      1      0
  SCD WILD-TYPE     24     19     28     24     20
D307V5, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           2            24
  CLUS_2           1            19
  CLUS_3           0            28
  CLUS_4           1            24
  CLUS_5           0            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        1      2      1
  SCD WILD-TYPE     47     51     17
D307V6, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           1            47
  CLUS_2           2            51
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCD MUTATED        0      0      0      3      1
  SCD WILD-TYPE     37     31     17     18     12
D307V7, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           0            37
  CLUS_2           0            31
  CLUS_3           0            17
  CLUS_4           3            18
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        3      1      0
  SCD WILD-TYPE     68     26     21
D307V8, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           3            68
  CLUS_2           1            26
  CLUS_3           0            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCD MUTATED        0      0      1      0      1      0      1
  SCD WILD-TYPE     18      8      9      8     35     25     11
D307V9, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           0             8
  CLUS_5           1            35
  CLUS_6           0            25
  CLUS_7           1            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCD MUTATED        0      0      1      1      0      1
  SCD WILD-TYPE     17     32     12     31     16      6
D307V10, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           0            17
  CLUS_2           0            32
  CLUS_3           1            12
  CLUS_4           1            31
  CLUS_5           0            16
  CLUS_6           1             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(308) Variable = PANK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK2 MUTATED        0      2      2      0
  PANK2 WILD-TYPE     19     51     28     24
D308V1, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK2 MUTATED        1      1      2      0
  PANK2 WILD-TYPE     34     29     32     26
D308V2, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK2 MUTATED        1      1      0      1      1
  PANK2 WILD-TYPE     28     17     13      8     12
D308V3, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK2 MUTATED        1      1      1      1      0
  PANK2 WILD-TYPE     31     17     11      9     10
D308V4, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK2 MUTATED        1      0      1      2      0
  PANK2 WILD-TYPE     25     20     27     23     20
D308V5, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK2 MUTATED        3      1      0
  PANK2 WILD-TYPE     45     52     18
D308V6, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK2 MUTATED        1      1      0      2      0
  PANK2 WILD-TYPE     36     30     17     19     13
D308V7, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK2 MUTATED        3      1      0
  PANK2 WILD-TYPE     68     26     21
D308V8, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PANK2 MUTATED        0      0      1      1      2      0      0
  PANK2 WILD-TYPE     18      8      9      7     34     25     12
D308V9, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PANK2 MUTATED        0      1      1      2      0      0
  PANK2 WILD-TYPE     17     31     12     30     16      7
D308V10, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(309) Variable = GOLGA6B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA6B MUTATED        2      2      2      0
  GOLGA6B WILD-TYPE     17     51     28     24
D309V1, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               2                17
  CLUS_2               2                51
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA6B MUTATED        3      1      2      0
  GOLGA6B WILD-TYPE     32     29     32     26
D309V2, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLGA6B MUTATED        1      1      0      2      0
  GOLGA6B WILD-TYPE     28     17     13      7     13
D309V3, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLGA6B MUTATED        1      1      0      2      0
  GOLGA6B WILD-TYPE     31     17     12      8     10
D309V4, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               2                 8
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLGA6B MUTATED        2      1      0      2      1
  GOLGA6B WILD-TYPE     24     19     28     23     19
D309V5, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GOLGA6B MUTATED        2      3      1
  GOLGA6B WILD-TYPE     46     50     17
D309V6, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               2                46
  CLUS_2               3                50
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLGA6B MUTATED        2      1      0      3      0
  GOLGA6B WILD-TYPE     35     30     17     18     13
D309V7, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GOLGA6B MUTATED        4      1      1
  GOLGA6B WILD-TYPE     67     26     20
D309V8, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GOLGA6B MUTATED        0      0      1      1      3      0      1
  GOLGA6B WILD-TYPE     18      8      9      7     33     25     11
D309V9, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GOLGA6B MUTATED        0      1      2      2      0      1
  GOLGA6B WILD-TYPE     17     31     11     30     16      6
D309V10, multiclass
        clus
vv       GOLGA6B MUTATED GOLGA6B WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               2                11
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(310) Variable = MKI67 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED        0      2      4      3
  MKI67 WILD-TYPE     19     51     26     21
D310V1, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             4              26
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED        3      4      1      1
  MKI67 WILD-TYPE     32     26     33     25
D310V2, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             4              26
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67 MUTATED        1      1      1      1      1
  MKI67 WILD-TYPE     28     17     12      8     12
D310V3, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67 MUTATED        2      1      0      0      2
  MKI67 WILD-TYPE     30     17     12     10      8
D310V4, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67 MUTATED        2      2      1      3      0
  MKI67 WILD-TYPE     24     18     27     22     20
D310V5, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        4      2      2
  MKI67 WILD-TYPE     44     51     16
D310V6, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67 MUTATED        2      0      2      3      1
  MKI67 WILD-TYPE     35     31     15     18     12
D310V7, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        4      2      2
  MKI67 WILD-TYPE     67     25     19
D310V8, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MKI67 MUTATED        0      0      1      0      4      1      1
  MKI67 WILD-TYPE     18      8      9      8     32     24     11
D310V9, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MKI67 MUTATED        0      2      0      3      1      1
  MKI67 WILD-TYPE     17     30     13     29     15      6
D310V10, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(311) Variable = STK19 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        0      2      2      0
  STK19 WILD-TYPE     19     51     28     24
D311V1, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        0      1      2      1
  STK19 WILD-TYPE     35     29     32     25
D311V2, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK19 MUTATED        0      1      0      0      2
  STK19 WILD-TYPE     29     17     13      9     11
D311V3, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK19 MUTATED        0      1      1      0      1
  STK19 WILD-TYPE     32     17     11     10      9
D311V4, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK19 MUTATED        0      0      2      1      1
  STK19 WILD-TYPE     26     20     26     24     19
D311V5, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        2      1      1
  STK19 WILD-TYPE     46     52     17
D311V6, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK19 MUTATED        1      2      1      0      0
  STK19 WILD-TYPE     36     29     16     21     13
D311V7, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        2      1      1
  STK19 WILD-TYPE     69     26     20
D311V8, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK19 MUTATED        1      0      0      0      1      2      0
  STK19 WILD-TYPE     17      8     10      8     35     23     12
D311V9, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK19 MUTATED        0      2      0      1      1      0
  STK19 WILD-TYPE     17     30     13     31     15      7
D311V10, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(312) Variable = SPANXN3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        1      4      0      0
  SPANXN3 WILD-TYPE     18     49     30     24
D312V1, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               4                49
  CLUS_3               0                30
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        1      1      3      0
  SPANXN3 WILD-TYPE     34     29     31     26
D312V2, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                29
  CLUS_3               3                31
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXN3 MUTATED        2      0      0      0      0
  SPANXN3 WILD-TYPE     27     18     13      9     13
D312V3, multiclass
[1] "Remove cluster labels:" "SPANXN3 MUTATED"       
clus
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                2                80 
       TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABF 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABR 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXN3 MUTATED        1      0      0      1      0
  SPANXN3 WILD-TYPE     31     18     12      9     10
D312V4, multiclass
[1] "Remove cluster labels:" "SPANXN3 MUTATED"       
clus
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                2                80 
       TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABF 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABR 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXN3 MUTATED        2      1      1      1      0
  SPANXN3 WILD-TYPE     24     19     27     24     20
D312V5, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN3 MUTATED        3      2      0
  SPANXN3 WILD-TYPE     45     51     18
D312V6, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXN3 MUTATED        4      0      0      1      0
  SPANXN3 WILD-TYPE     33     31     17     20     13
D312V7, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               4                33
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN3 MUTATED        4      1      0
  SPANXN3 WILD-TYPE     67     26     21
D312V8, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPANXN3 MUTATED        2      1      0      0      1      1      0
  SPANXN3 WILD-TYPE     16      7     10      8     35     24     12
D312V9, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPANXN3 MUTATED        2      0      1      2      0      0
  SPANXN3 WILD-TYPE     15     32     12     30     16      7
D312V10, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               0                32
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(313) Variable = RTEL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTEL1 MUTATED        3      0      3      0
  RTEL1 WILD-TYPE     16     53     27     24
D313V1, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             0              53
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTEL1 MUTATED        4      0      2      0
  RTEL1 WILD-TYPE     31     30     32     26
D313V2, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTEL1 MUTATED        1      2      0      1      0
  RTEL1 WILD-TYPE     28     16     13      8     13
D313V3, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTEL1 MUTATED        3      1      0      0      0
  RTEL1 WILD-TYPE     29     17     12     10     10
D313V4, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTEL1 MUTATED        3      0      1      1      1
  RTEL1 WILD-TYPE     23     20     27     24     19
D313V5, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RTEL1 MUTATED        1      4      1
  RTEL1 WILD-TYPE     47     49     17
D313V6, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTEL1 MUTATED        3      2      0      1      0
  RTEL1 WILD-TYPE     34     29     17     20     13
D313V7, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RTEL1 MUTATED        5      0      1
  RTEL1 WILD-TYPE     66     27     20
D313V8, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RTEL1 MUTATED        0      1      1      1      2      1      0
  RTEL1 WILD-TYPE     18      7      9      7     34     24     12
D313V9, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RTEL1 MUTATED        0      3      1      1      1      0
  RTEL1 WILD-TYPE     17     29     12     31     15      7
D313V10, multiclass
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(314) Variable = NWD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NWD1 MUTATED        1      2      3      2
  NWD1 WILD-TYPE     18     51     27     22
D314V1, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            3             27
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NWD1 MUTATED        2      1      3      2
  NWD1 WILD-TYPE     33     29     31     24
D314V2, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            3             31
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        3      0      1      1      1
  NWD1 WILD-TYPE     26     18     12      8     12
D314V3, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            3             26
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        4      0      0      0      2
  NWD1 WILD-TYPE     28     18     12     10      8
D314V4, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        1      1      2      2      2
  NWD1 WILD-TYPE     25     19     26     23     18
D314V5, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NWD1 MUTATED        3      4      1
  NWD1 WILD-TYPE     45     49     17
D314V6, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            4             49
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        2      3      2      1      0
  NWD1 WILD-TYPE     35     28     15     20     13
D314V7, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            3             28
  CLUS_3            2             15
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NWD1 MUTATED        5      2      1
  NWD1 WILD-TYPE     66     25     20
D314V8, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NWD1 MUTATED        1      1      1      0      1      4      0
  NWD1 WILD-TYPE     17      7      9      8     35     21     12
D314V9, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            4             21
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NWD1 MUTATED        0      2      1      3      2      0
  NWD1 WILD-TYPE     17     30     12     29     14      7
D314V10, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            1             12
  CLUS_4            3             29
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(315) Variable = NBPF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        0      2      1      2
  NBPF1 WILD-TYPE     19     51     29     22
D315V1, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        2      1      1      1
  NBPF1 WILD-TYPE     33     29     33     25
D315V2, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF1 MUTATED        1      0      1      1      0
  NBPF1 WILD-TYPE     28     18     12      8     13
D315V3, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF1 MUTATED        3      0      0      0      0
  NBPF1 WILD-TYPE     29     18     12     10     10
D315V4, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF1 MUTATED        1      1      0      2      1
  NBPF1 WILD-TYPE     25     19     28     23     19
D315V5, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF1 MUTATED        3      2      0
  NBPF1 WILD-TYPE     45     51     18
D315V6, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF1 MUTATED        1      1      1      1      1
  NBPF1 WILD-TYPE     36     30     16     20     12
D315V7, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF1 MUTATED        3      1      1
  NBPF1 WILD-TYPE     68     26     20
D315V8, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF1 MUTATED        1      0      1      0      1      2      0
  NBPF1 WILD-TYPE     17      8      9      8     35     23     12
D315V9, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBPF1 MUTATED        1      0      1      2      1      0
  NBPF1 WILD-TYPE     16     32     12     30     15      7
D315V10, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(316) Variable = PPP1R10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R10 MUTATED        1      1      1      1
  PPP1R10 WILD-TYPE     18     52     29     23
D316V1, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R10 MUTATED        2      1      1      0
  PPP1R10 WILD-TYPE     33     29     33     26
D316V2, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R10 MUTATED        1      0      0      0      1
  PPP1R10 WILD-TYPE     28     18     13      9     12
D316V3, multiclass
[1] "Remove cluster labels:" "PPP1R10 MUTATED"       
clus
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3E-AAAZ 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ6 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921        TCGA-FZ-5922 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926        TCGA-H8-A6C1 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651        TCGA-IB-7652 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R10 MUTATED        1      0      0      0      1
  PPP1R10 WILD-TYPE     31     18     12     10      9
D316V4, multiclass
[1] "Remove cluster labels:" "PPP1R10 MUTATED"       
clus
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3E-AAAZ 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ6 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921        TCGA-FZ-5922 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926        TCGA-H8-A6C1 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651        TCGA-IB-7652 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R10 MUTATED        0      1      1      1      1
  PPP1R10 WILD-TYPE     26     19     27     24     19
D316V5, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP1R10 MUTATED        2      1      1
  PPP1R10 WILD-TYPE     46     52     17
D316V6, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R10 MUTATED        0      1      0      2      1
  PPP1R10 WILD-TYPE     37     30     17     19     12
D316V7, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP1R10 MUTATED        3      1      0
  PPP1R10 WILD-TYPE     68     26     21
D316V8, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP1R10 MUTATED        1      0      0      1      1      0      1
  PPP1R10 WILD-TYPE     17      8     10      7     35     25     11
D316V9, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               1                 7
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP1R10 MUTATED        0      1      1      1      0      1
  PPP1R10 WILD-TYPE     17     31     12     31     16      6
D316V10, multiclass
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(317) Variable = DDX50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX50 MUTATED        1      1      2      1
  DDX50 WILD-TYPE     18     52     28     23
D317V1, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX50 MUTATED        1      1      3      0
  DDX50 WILD-TYPE     34     29     31     26
D317V2, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        1      1      1      1      1
  DDX50 WILD-TYPE     28     17     12      8     12
D317V3, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        2      1      2      0      0
  DDX50 WILD-TYPE     30     17     10     10     10
D317V4, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        0      1      2      2      0
  DDX50 WILD-TYPE     26     19     26     23     20
D317V5, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX50 MUTATED        2      3      0
  DDX50 WILD-TYPE     46     50     18
D317V6, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        1      3      0      1      0
  DDX50 WILD-TYPE     36     28     17     20     13
D317V7, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX50 MUTATED        4      1      0
  DDX50 WILD-TYPE     67     26     21
D317V8, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX50 MUTATED        0      1      1      0      0      3      0
  DDX50 WILD-TYPE     18      7      9      8     36     22     12
D317V9, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX50 MUTATED        1      2      0      2      0      0
  DDX50 WILD-TYPE     16     30     13     30     16      7
D317V10, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(318) Variable = HOXA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXA1 MUTATED        1      1      2      0
  HOXA1 WILD-TYPE     18     52     28     24
D318V1, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXA1 MUTATED        1      2      1      0
  HOXA1 WILD-TYPE     34     28     33     26
D318V2, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        2      0      0      1      0
  HOXA1 WILD-TYPE     27     18     13      8     13
D318V3, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        3      0      0      0      0
  HOXA1 WILD-TYPE     29     18     12     10     10
D318V4, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        0      1      1      2      0
  HOXA1 WILD-TYPE     26     19     27     23     20
D318V5, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXA1 MUTATED        2      1      1
  HOXA1 WILD-TYPE     46     52     17
D318V6, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        1      0      0      3      0
  HOXA1 WILD-TYPE     36     31     17     18     13
D318V7, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXA1 MUTATED        2      1      1
  HOXA1 WILD-TYPE     69     26     20
D318V8, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HOXA1 MUTATED        1      0      1      0      1      0      1
  HOXA1 WILD-TYPE     17      8      9      8     35     25     11
D318V9, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOXA1 MUTATED        0      1      0      2      0      1
  HOXA1 WILD-TYPE     17     31     13     30     16      6
D318V10, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(319) Variable = SLC4A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A3 MUTATED        0      5      1      0
  SLC4A3 WILD-TYPE     19     48     29     24
D319V1, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              5               48
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A3 MUTATED        4      1      1      0
  SLC4A3 WILD-TYPE     31     29     33     26
D319V2, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A3 MUTATED        2      0      1      2      0
  SLC4A3 WILD-TYPE     27     18     12      7     13
D319V3, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A3 MUTATED        3      0      1      1      0
  SLC4A3 WILD-TYPE     29     18     11      9     10
D319V4, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A3 MUTATED        0      2      1      3      0
  SLC4A3 WILD-TYPE     26     18     27     22     20
D319V5, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A3 MUTATED        4      2      0
  SLC4A3 WILD-TYPE     44     51     18
D319V6, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A3 MUTATED        1      0      3      1      1
  SLC4A3 WILD-TYPE     36     31     14     20     12
D319V7, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              3               14
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A3 MUTATED        3      2      1
  SLC4A3 WILD-TYPE     68     25     20
D319V8, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               25
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC4A3 MUTATED        1      1      2      0      1      1      0
  SLC4A3 WILD-TYPE     17      7      8      8     35     24     12
D319V9, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC4A3 MUTATED        1      0      0      4      1      0
  SLC4A3 WILD-TYPE     16     32     13     28     15      7
D319V10, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              4               28
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(320) Variable = XPA MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPA MUTATED        1      2      0      0
  XPA WILD-TYPE     18     51     30     24
D320V1, multiclass
        clus
vv       XPA MUTATED XPA WILD-TYPE
  CLUS_1           1            18
  CLUS_2           2            51
  CLUS_3           0            30
  CLUS_4           0            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPA MUTATED        1      2      0      0
  XPA WILD-TYPE     34     28     34     26
D320V2, multiclass
        clus
vv       XPA MUTATED XPA WILD-TYPE
  CLUS_1           1            34
  CLUS_2           2            28
  CLUS_3           0            34
  CLUS_4           0            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XPA MUTATED        0      1      1      0      0
  XPA WILD-TYPE     29     17     12      9     13
D320V3, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2            80 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6    TCGA-FZ-5919 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5923    TCGA-FZ-5924    TCGA-FZ-5926 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925    TCGA-IB-7651    TCGA-IB-7652 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XPA MUTATED        0      1      1      0      0
  XPA WILD-TYPE     32     17     11     10     10
D320V4, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2            80 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6    TCGA-FZ-5919 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5923    TCGA-FZ-5924    TCGA-FZ-5926 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925    TCGA-IB-7651    TCGA-IB-7652 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A7LX    TCGA-IB-A7M4 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUS 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-RB-AA9M    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XPA MUTATED        0      1      1      0      0
  XPA WILD-TYPE     26     19     27     25     20
D320V5, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2           117 
   TCGA-2J-AAB1    TCGA-2J-AAB4    TCGA-2J-AAB6    TCGA-2J-AAB8    TCGA-2J-AAB9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABA    TCGA-2J-AABE    TCGA-2J-AABF    TCGA-2J-AABH    TCGA-2J-AABK 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABO    TCGA-2J-AABP    TCGA-2J-AABR    TCGA-2J-AABT    TCGA-2J-AABU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABV    TCGA-2L-AAQA    TCGA-2L-AAQE    TCGA-2L-AAQI    TCGA-2L-AAQJ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5    TCGA-3A-A9I7    TCGA-3A-A9I9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IC    TCGA-3A-A9IH    TCGA-3A-A9IJ    TCGA-3A-A9IL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IO    TCGA-3A-A9IR    TCGA-3A-A9IS    TCGA-3A-A9IU    TCGA-3A-A9IX 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IZ    TCGA-3A-A9J0    TCGA-3E-AAAY    TCGA-3E-AAAZ    TCGA-F2-7273 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-F2-A7TX    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPS    TCGA-FB-AAPU    TCGA-FB-AAPZ    TCGA-FB-AAQ0 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAQ1    TCGA-FB-AAQ2    TCGA-FB-AAQ3    TCGA-FB-AAQ6    TCGA-H8-A6C1 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HV-A7OL    TCGA-HV-A7OP    TCGA-HV-AA8V    TCGA-HV-AA8X    TCGA-HZ-7918 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-7925    TCGA-HZ-8637    TCGA-HZ-A49I    TCGA-HZ-A77O    TCGA-HZ-A77P 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A77Q    TCGA-HZ-A8P0    TCGA-HZ-A8P1    TCGA-HZ-A9TJ    TCGA-IB-7651 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A6UG 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUQ    TCGA-IB-AAUR    TCGA-IB-AAUS    TCGA-IB-AAUU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-RL-AAAS    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUG    TCGA-XD-AAUH    TCGA-XD-AAUI 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XD-AAUL    TCGA-XN-A8T3    TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  XPA MUTATED        1      0      1
  XPA WILD-TYPE     47     53     17
D320V6, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2           117 
   TCGA-2J-AAB1    TCGA-2J-AAB4    TCGA-2J-AAB6    TCGA-2J-AAB8    TCGA-2J-AAB9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABA    TCGA-2J-AABE    TCGA-2J-AABF    TCGA-2J-AABH    TCGA-2J-AABK 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABO    TCGA-2J-AABP    TCGA-2J-AABR    TCGA-2J-AABT    TCGA-2J-AABU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABV    TCGA-2L-AAQA    TCGA-2L-AAQE    TCGA-2L-AAQI    TCGA-2L-AAQJ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5    TCGA-3A-A9I7    TCGA-3A-A9I9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IC    TCGA-3A-A9IH    TCGA-3A-A9IJ    TCGA-3A-A9IL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IO    TCGA-3A-A9IR    TCGA-3A-A9IS    TCGA-3A-A9IU    TCGA-3A-A9IX 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IZ    TCGA-3A-A9J0    TCGA-3E-AAAY    TCGA-3E-AAAZ    TCGA-F2-7273 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-F2-A7TX    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPS    TCGA-FB-AAPU    TCGA-FB-AAPZ    TCGA-FB-AAQ0 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAQ1    TCGA-FB-AAQ2    TCGA-FB-AAQ3    TCGA-FB-AAQ6    TCGA-H8-A6C1 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HV-A7OL    TCGA-HV-A7OP    TCGA-HV-AA8V    TCGA-HV-AA8X    TCGA-HZ-7918 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-7925    TCGA-HZ-8637    TCGA-HZ-A49I    TCGA-HZ-A77O    TCGA-HZ-A77P 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A77Q    TCGA-HZ-A8P0    TCGA-HZ-A8P1    TCGA-HZ-A9TJ    TCGA-IB-7651 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A6UG 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUQ    TCGA-IB-AAUR    TCGA-IB-AAUS    TCGA-IB-AAUU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-RL-AAAS    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUG    TCGA-XD-AAUH    TCGA-XD-AAUI 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XD-AAUL    TCGA-XN-A8T3    TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XPA MUTATED        1      0      0      1      0
  XPA WILD-TYPE     36     31     17     20     13
D320V7, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2           117 
   TCGA-2J-AAB1    TCGA-2J-AAB4    TCGA-2J-AAB6    TCGA-2J-AAB8    TCGA-2J-AAB9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABA    TCGA-2J-AABE    TCGA-2J-AABF    TCGA-2J-AABH    TCGA-2J-AABK 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABO    TCGA-2J-AABP    TCGA-2J-AABR    TCGA-2J-AABT    TCGA-2J-AABU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABV    TCGA-2L-AAQA    TCGA-2L-AAQE    TCGA-2L-AAQI    TCGA-2L-AAQJ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5    TCGA-3A-A9I7    TCGA-3A-A9I9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IC    TCGA-3A-A9IH    TCGA-3A-A9IJ    TCGA-3A-A9IL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IO    TCGA-3A-A9IR    TCGA-3A-A9IS    TCGA-3A-A9IU    TCGA-3A-A9IX 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IZ    TCGA-3A-A9J0    TCGA-3E-AAAY    TCGA-3E-AAAZ    TCGA-F2-7273 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-F2-A7TX    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPS    TCGA-FB-AAPU    TCGA-FB-AAPZ    TCGA-FB-AAQ0 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAQ1    TCGA-FB-AAQ2    TCGA-FB-AAQ3    TCGA-FB-AAQ6    TCGA-H8-A6C1 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HV-A7OL    TCGA-HV-A7OP    TCGA-HV-AA8V    TCGA-HV-AA8X    TCGA-HZ-7918 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-7925    TCGA-HZ-8637    TCGA-HZ-A49I    TCGA-HZ-A77O    TCGA-HZ-A77P 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A77Q    TCGA-HZ-A8P0    TCGA-HZ-A8P1    TCGA-HZ-A9TJ    TCGA-IB-7651 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A6UG 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUQ    TCGA-IB-AAUR    TCGA-IB-AAUS    TCGA-IB-AAUU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-RL-AAAS    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUG    TCGA-XD-AAUH    TCGA-XD-AAUI 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XD-AAUL    TCGA-XN-A8T3    TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  XPA MUTATED        1      0      1
  XPA WILD-TYPE     70     27     20
D320V8, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2           117 
   TCGA-2J-AAB1    TCGA-2J-AAB4    TCGA-2J-AAB6    TCGA-2J-AAB8    TCGA-2J-AAB9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABA    TCGA-2J-AABE    TCGA-2J-AABF    TCGA-2J-AABH    TCGA-2J-AABK 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABO    TCGA-2J-AABP    TCGA-2J-AABR    TCGA-2J-AABT    TCGA-2J-AABU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABV    TCGA-2L-AAQA    TCGA-2L-AAQE    TCGA-2L-AAQI    TCGA-2L-AAQJ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5    TCGA-3A-A9I7    TCGA-3A-A9I9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IC    TCGA-3A-A9IH    TCGA-3A-A9IJ    TCGA-3A-A9IL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IO    TCGA-3A-A9IR    TCGA-3A-A9IS    TCGA-3A-A9IU    TCGA-3A-A9IX 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IZ    TCGA-3A-A9J0    TCGA-3E-AAAY    TCGA-3E-AAAZ    TCGA-F2-7273 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-F2-A7TX    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPQ    TCGA-FB-AAPS    TCGA-FB-AAPU    TCGA-FB-AAPZ    TCGA-FB-AAQ0 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAQ1    TCGA-FB-AAQ2    TCGA-FB-AAQ3    TCGA-FB-AAQ6    TCGA-H8-A6C1 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HV-A7OL    TCGA-HV-A7OP    TCGA-HV-AA8V    TCGA-HV-AA8X    TCGA-HZ-7918 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-7925    TCGA-HZ-8637    TCGA-HZ-A49I    TCGA-HZ-A77O    TCGA-HZ-A77P 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A77Q    TCGA-HZ-A8P0    TCGA-HZ-A8P1    TCGA-HZ-A9TJ    TCGA-IB-7651 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A6UG 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUQ    TCGA-IB-AAUR    TCGA-IB-AAUS    TCGA-IB-AAUU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUV    TCGA-IB-AAUW    TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-OE-A75W    TCGA-Q3-A5QY    TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-RL-AAAS    TCGA-S4-A8RO    TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUG    TCGA-XD-AAUH    TCGA-XD-AAUI 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XD-AAUL    TCGA-XN-A8T3    TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XPA MUTATED        0      0      0      0      1      0      1
  XPA WILD-TYPE     18      8     10      8     35     25     11
D320V9, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2           115 
   TCGA-2J-AAB1    TCGA-2J-AAB4    TCGA-2J-AAB6    TCGA-2J-AAB8    TCGA-2J-AAB9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABA    TCGA-2J-AABE    TCGA-2J-AABF    TCGA-2J-AABH    TCGA-2J-AABK 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABO    TCGA-2J-AABP    TCGA-2J-AABR    TCGA-2J-AABT    TCGA-2J-AABU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQA    TCGA-2L-AAQE    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQM    TCGA-3A-A9I5    TCGA-3A-A9I7    TCGA-3A-A9I9    TCGA-3A-A9IB 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IC    TCGA-3A-A9IH    TCGA-3A-A9IJ    TCGA-3A-A9IL    TCGA-3A-A9IO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IR    TCGA-3A-A9IS    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9J0    TCGA-3E-AAAY    TCGA-3E-AAAZ    TCGA-F2-7273    TCGA-F2-A7TX 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP    TCGA-FB-AAPQ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPS    TCGA-FB-AAPU    TCGA-FB-AAPZ    TCGA-FB-AAQ0    TCGA-FB-AAQ1 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAQ2    TCGA-FB-AAQ3    TCGA-FB-AAQ6    TCGA-H8-A6C1    TCGA-HV-A7OL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HV-AA8V    TCGA-HV-AA8X    TCGA-HZ-7918    TCGA-HZ-7925    TCGA-HZ-8637 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A49I    TCGA-HZ-A77O    TCGA-HZ-A77P    TCGA-HZ-A77Q    TCGA-HZ-A8P0 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A8P1    TCGA-HZ-A9TJ    TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A6UG    TCGA-IB-A7LX    TCGA-IB-A7M4 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUQ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUR    TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M    TCGA-RL-AAAS    TCGA-S4-A8RO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77G    TCGA-US-A77J 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XD-AAUG    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL    TCGA-XN-A8T3 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XPA MUTATED        0      1      0      0      0      1
  XPA WILD-TYPE     17     31     13     32     16      6
D320V10, multiclass
[1] "Remove cluster labels:" "XPA MUTATED"           
clus
  XPA MUTATED XPA WILD-TYPE 
            2           115 
   TCGA-2J-AAB1    TCGA-2J-AAB4    TCGA-2J-AAB6    TCGA-2J-AAB8    TCGA-2J-AAB9 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABA    TCGA-2J-AABE    TCGA-2J-AABF    TCGA-2J-AABH    TCGA-2J-AABK 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2J-AABO    TCGA-2J-AABP    TCGA-2J-AABR    TCGA-2J-AABT    TCGA-2J-AABU 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQA    TCGA-2L-AAQE    TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-2L-AAQM    TCGA-3A-A9I5    TCGA-3A-A9I7    TCGA-3A-A9I9    TCGA-3A-A9IB 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IC    TCGA-3A-A9IH    TCGA-3A-A9IJ    TCGA-3A-A9IL    TCGA-3A-A9IO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9IR    TCGA-3A-A9IS    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-3A-A9J0    TCGA-3E-AAAY    TCGA-3E-AAAZ    TCGA-F2-7273    TCGA-F2-A7TX 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-AAPP    TCGA-FB-AAPQ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAPS    TCGA-FB-AAPU    TCGA-FB-AAPZ    TCGA-FB-AAQ0    TCGA-FB-AAQ1 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-FB-AAQ2    TCGA-FB-AAQ3    TCGA-FB-AAQ6    TCGA-H8-A6C1    TCGA-HV-A7OL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HV-AA8V    TCGA-HV-AA8X    TCGA-HZ-7918    TCGA-HZ-7925    TCGA-HZ-8637 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A49I    TCGA-HZ-A77O    TCGA-HZ-A77P    TCGA-HZ-A77Q    TCGA-HZ-A8P0 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-HZ-A8P1    TCGA-HZ-A9TJ    TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UF    TCGA-IB-A6UG    TCGA-IB-A7LX    TCGA-IB-A7M4 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO    TCGA-IB-AAUP    TCGA-IB-AAUQ 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-IB-AAUR    TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M    TCGA-RL-AAAS    TCGA-S4-A8RO 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-US-A776    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77G    TCGA-US-A77J 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XD-AAUG    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL    TCGA-XN-A8T3 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" "XPA WILD-TYPE" 

Clustering(321) Variable = FADS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FADS2 MUTATED        2      1      1      0
  FADS2 WILD-TYPE     17     52     29     24
D321V1, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FADS2 MUTATED        0      1      2      1
  FADS2 WILD-TYPE     35     29     32     25
D321V2, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FADS2 MUTATED        0      1      1      0      1
  FADS2 WILD-TYPE     29     17     12      9     12
D321V3, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FADS2 MUTATED        0      1      1      0      1
  FADS2 WILD-TYPE     32     17     11     10      9
D321V4, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FADS2 MUTATED        1      0      1      0      1
  FADS2 WILD-TYPE     25     20     27     25     19
D321V5, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        1      2      0
  FADS2 WILD-TYPE     47     51     18
D321V6, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FADS2 MUTATED        2      1      0      0      0
  FADS2 WILD-TYPE     35     30     17     21     13
D321V7, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        3      0      0
  FADS2 WILD-TYPE     68     27     21
D321V8, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FADS2 MUTATED        0      1      0      0      1      1      0
  FADS2 WILD-TYPE     18      7     10      8     35     24     12
D321V9, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FADS2 MUTATED        0      2      0      0      1      0
  FADS2 WILD-TYPE     17     30     13     32     15      7
D321V10, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(322) Variable = SYT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        2      0      1      1
  SYT2 WILD-TYPE     17     53     29     23
D322V1, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            0             53
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        2      0      2      0
  SYT2 WILD-TYPE     33     30     32     26
D322V2, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT2 MUTATED        1      1      0      0      0
  SYT2 WILD-TYPE     28     17     13      9     13
D322V3, multiclass
[1] "Remove cluster labels:" "SYT2 MUTATED"          
clus
  SYT2 MUTATED SYT2 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A78T 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT2 MUTATED        1      1      0      0      0
  SYT2 WILD-TYPE     31     17     12     10     10
D322V4, multiclass
[1] "Remove cluster labels:" "SYT2 MUTATED"          
clus
  SYT2 MUTATED SYT2 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A78T 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT2 MUTATED        1      0      2      1      0
  SYT2 WILD-TYPE     25     20     26     24     20
D322V5, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        1      2      1
  SYT2 WILD-TYPE     47     51     17
D322V6, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT2 MUTATED        3      1      0      0      0
  SYT2 WILD-TYPE     34     30     17     21     13
D322V7, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            0             21
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        3      0      1
  SYT2 WILD-TYPE     68     27     20
D322V8, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYT2 MUTATED        0      0      0      0      2      2      0
  SYT2 WILD-TYPE     18      8     10      8     34     23     12
D322V9, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYT2 MUTATED        0      2      0      1      1      0
  SYT2 WILD-TYPE     17     30     13     31     15      7
D322V10, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(323) Variable = RBM33 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM33 MUTATED        1      3      1      1
  RBM33 WILD-TYPE     18     50     29     23
D323V1, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM33 MUTATED        2      1      2      1
  RBM33 WILD-TYPE     33     29     32     25
D323V2, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM33 MUTATED        0      1      0      1      0
  RBM33 WILD-TYPE     29     17     13      8     13
D323V3, multiclass
[1] "Remove cluster labels:" "RBM33 MUTATED"         
clus
  RBM33 MUTATED RBM33 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM33 MUTATED        1      1      0      0      0
  RBM33 WILD-TYPE     31     17     12     10     10
D323V4, multiclass
[1] "Remove cluster labels:" "RBM33 MUTATED"         
clus
  RBM33 MUTATED RBM33 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM33 MUTATED        0      0      3      2      1
  RBM33 WILD-TYPE     26     20     25     23     19
D323V5, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             3              25
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM33 MUTATED        2      4      0
  RBM33 WILD-TYPE     46     49     18
D323V6, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM33 MUTATED        3      1      1      1      0
  RBM33 WILD-TYPE     34     30     16     20     13
D323V7, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM33 MUTATED        5      1      0
  RBM33 WILD-TYPE     66     26     21
D323V8, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM33 MUTATED        1      1      1      1      2      0      0
  RBM33 WILD-TYPE     17      7      9      7     34     25     12
D323V9, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM33 MUTATED        0      3      1      2      0      0
  RBM33 WILD-TYPE     17     29     12     30     16      7
D323V10, multiclass
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(324) Variable = ESD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESD MUTATED        0      1      3      1
  ESD WILD-TYPE     19     52     27     23
D324V1, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           0            19
  CLUS_2           1            52
  CLUS_3           3            27
  CLUS_4           1            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESD MUTATED        1      2      2      0
  ESD WILD-TYPE     34     28     32     26
D324V2, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           1            34
  CLUS_2           2            28
  CLUS_3           2            32
  CLUS_4           0            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESD MUTATED        0      0      1      1      1
  ESD WILD-TYPE     29     18     12      8     12
D324V3, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           0            29
  CLUS_2           0            18
  CLUS_3           1            12
  CLUS_4           1             8
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESD MUTATED        2      0      0      0      1
  ESD WILD-TYPE     30     18     12     10      9
D324V4, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           2            30
  CLUS_2           0            18
  CLUS_3           0            12
  CLUS_4           0            10
  CLUS_5           1             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESD MUTATED        0      2      2      1      0
  ESD WILD-TYPE     26     18     26     24     20
D324V5, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           0            26
  CLUS_2           2            18
  CLUS_3           2            26
  CLUS_4           1            24
  CLUS_5           0            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ESD MUTATED        1      2      2
  ESD WILD-TYPE     47     51     16
D324V6, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           1            47
  CLUS_2           2            51
  CLUS_3           2            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESD MUTATED        1      1      0      3      0
  ESD WILD-TYPE     36     30     17     18     13
D324V7, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           1            36
  CLUS_2           1            30
  CLUS_3           0            17
  CLUS_4           3            18
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ESD MUTATED        3      0      2
  ESD WILD-TYPE     68     27     19
D324V8, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           3            68
  CLUS_2           0            27
  CLUS_3           2            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESD MUTATED        0      0      1      0      1      1      2
  ESD WILD-TYPE     18      8      9      8     35     24     10
D324V9, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           0             8
  CLUS_5           1            35
  CLUS_6           1            24
  CLUS_7           2            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ESD MUTATED        0      2      0      1      0      2
  ESD WILD-TYPE     17     30     13     31     16      5
D324V10, multiclass
        clus
vv       ESD MUTATED ESD WILD-TYPE
  CLUS_1           0            17
  CLUS_2           2            30
  CLUS_3           0            13
  CLUS_4           1            31
  CLUS_5           0            16
  CLUS_6           2             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(325) Variable = RANBP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP2 MUTATED        4      5      4      1
  RANBP2 WILD-TYPE     15     48     26     23
D325V1, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              4               15
  CLUS_2              5               48
  CLUS_3              4               26
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP2 MUTATED        5      3      5      1
  RANBP2 WILD-TYPE     30     27     29     25
D325V2, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              5               30
  CLUS_2              3               27
  CLUS_3              5               29
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP2 MUTATED        3      2      0      3      1
  RANBP2 WILD-TYPE     26     16     13      6     12
D325V3, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              3                6
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP2 MUTATED        3      2      1      3      0
  RANBP2 WILD-TYPE     29     16     11      7     10
D325V4, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              2               16
  CLUS_3              1               11
  CLUS_4              3                7
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP2 MUTATED        3      0      5      6      0
  RANBP2 WILD-TYPE     23     20     23     19     20
D325V5, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              0               20
  CLUS_3              5               23
  CLUS_4              6               19
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP2 MUTATED        7      6      1
  RANBP2 WILD-TYPE     41     47     17
D325V6, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              7               41
  CLUS_2              6               47
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP2 MUTATED        3      2      4      5      0
  RANBP2 WILD-TYPE     34     29     13     16     13
D325V7, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              2               29
  CLUS_3              4               13
  CLUS_4              5               16
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP2 MUTATED        9      4      1
  RANBP2 WILD-TYPE     62     23     20
D325V8, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              9               62
  CLUS_2              4               23
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RANBP2 MUTATED        2      2      2      0      6      1      0
  RANBP2 WILD-TYPE     16      6      8      8     30     24     12
D325V9, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              2                6
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              6               30
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RANBP2 MUTATED        2      3      1      6      1      0
  RANBP2 WILD-TYPE     15     29     12     26     15      7
D325V10, multiclass
        clus
vv       RANBP2 MUTATED RANBP2 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              3               29
  CLUS_3              1               12
  CLUS_4              6               26
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(326) Variable = ABCB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        2      1      2      0
  ABCB4 WILD-TYPE     17     52     28     24
D326V1, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        3      0      0      1
  ABCB4 WILD-TYPE     32     30     34     25
D326V2, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        0      2      1      0      0
  ABCB4 WILD-TYPE     29     16     12      9     13
D326V3, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        0      2      1      0      0
  ABCB4 WILD-TYPE     32     16     11     10     10
D326V4, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        1      1      0      0      2
  ABCB4 WILD-TYPE     25     19     28     25     18
D326V5, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED        0      3      1
  ABCB4 WILD-TYPE     48     50     17
D326V6, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        1      2      0      0      1
  ABCB4 WILD-TYPE     36     29     17     21     12
D326V7, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED        3      0      1
  ABCB4 WILD-TYPE     68     27     20
D326V8, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCB4 MUTATED        0      0      0      2      1      0      1
  ABCB4 WILD-TYPE     18      8     10      6     35     25     11
D326V9, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             2               6
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCB4 MUTATED        1      0      2      0      1      0
  ABCB4 WILD-TYPE     16     32     11     32     15      7
D326V10, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             2              11
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(327) Variable = FHL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHL3 MUTATED        0      2      2      0
  FHL3 WILD-TYPE     19     51     28     24
D327V1, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHL3 MUTATED        2      0      1      1
  FHL3 WILD-TYPE     33     30     33     25
D327V2, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHL3 MUTATED        0      1      0      2      0
  FHL3 WILD-TYPE     29     17     13      7     13
D327V3, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHL3 MUTATED        1      1      0      1      0
  FHL3 WILD-TYPE     31     17     12      9     10
D327V4, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHL3 MUTATED        0      0      1      2      1
  FHL3 WILD-TYPE     26     20     27     23     19
D327V5, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FHL3 MUTATED        2      2      0
  FHL3 WILD-TYPE     46     51     18
D327V6, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHL3 MUTATED        1      2      0      1      0
  FHL3 WILD-TYPE     36     29     17     20     13
D327V7, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FHL3 MUTATED        3      1      0
  FHL3 WILD-TYPE     68     26     21
D327V8, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FHL3 MUTATED        0      0      1      1      1      1      0
  FHL3 WILD-TYPE     18      8      9      7     35     24     12
D327V9, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHL3 MUTATED        0      1      1      2      0      0
  FHL3 WILD-TYPE     17     31     12     30     16      7
D327V10, multiclass
        clus
vv       FHL3 MUTATED FHL3 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(328) Variable = NAP1L3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L3 MUTATED        1      2      1      0
  NAP1L3 WILD-TYPE     18     51     29     24
D328V1, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L3 MUTATED        0      1      2      1
  NAP1L3 WILD-TYPE     35     29     32     25
D328V2, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L3 MUTATED        0      1      0      0      2
  NAP1L3 WILD-TYPE     29     17     13      9     11
D328V3, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L3 MUTATED        0      1      1      0      1
  NAP1L3 WILD-TYPE     32     17     11     10      9
D328V4, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              0               32
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L3 MUTATED        1      0      1      2      0
  NAP1L3 WILD-TYPE     25     20     27     23     20
D328V5, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        2      2      0
  NAP1L3 WILD-TYPE     46     51     18
D328V6, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L3 MUTATED        2      1      1      0      0
  NAP1L3 WILD-TYPE     35     30     16     21     13
D328V7, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        2      2      0
  NAP1L3 WILD-TYPE     69     25     21
D328V8, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L3 MUTATED        1      0      1      0      2      0      0
  NAP1L3 WILD-TYPE     17      8      9      8     34     25     12
D328V9, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAP1L3 MUTATED        0      2      0      2      0      0
  NAP1L3 WILD-TYPE     17     30     13     30     16      7
D328V10, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(329) Variable = GNAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        2      2      4      1
  GNAS WILD-TYPE     17     51     26     23
D329V1, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            4             26
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        5      1      1      2
  GNAS WILD-TYPE     30     29     33     24
D329V2, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            5             30
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        2      2      0      1      2
  GNAS WILD-TYPE     27     16     13      8     11
D329V3, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            2             27
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        3      1      1      2      0
  GNAS WILD-TYPE     29     17     11      8     10
D329V4, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            2              8
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        4      0      2      2      1
  GNAS WILD-TYPE     22     20     26     23     19
D329V5, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            4             22
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        4      4      1
  GNAS WILD-TYPE     44     49     17
D329V6, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            4             44
  CLUS_2            4             49
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        3      2      0      4      0
  GNAS WILD-TYPE     34     29     17     17     13
D329V7, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            3             34
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            4             17
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        8      1      0
  GNAS WILD-TYPE     63     26     21
D329V8, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            8             63
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNAS MUTATED        1      2      1      0      3      1      1
  GNAS WILD-TYPE     17      6      9      8     33     24     11
D329V9, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2              6
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNAS MUTATED        3      2      2      2      0      0
  GNAS WILD-TYPE     14     30     11     30     16      7
D329V10, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            3             14
  CLUS_2            2             30
  CLUS_3            2             11
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(330) Variable = PARP14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP14 MUTATED        0      2      2      1
  PARP14 WILD-TYPE     19     51     28     23
D330V1, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP14 MUTATED        1      1      2      1
  PARP14 WILD-TYPE     34     29     32     25
D330V2, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP14 MUTATED        1      1      1      1      0
  PARP14 WILD-TYPE     28     17     12      8     13
D330V3, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP14 MUTATED        2      1      1      0      0
  PARP14 WILD-TYPE     30     17     11     10     10
D330V4, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP14 MUTATED        0      1      2      2      0
  PARP14 WILD-TYPE     26     19     26     23     20
D330V5, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              2               26
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP14 MUTATED        3      1      1
  PARP14 WILD-TYPE     45     52     17
D330V6, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP14 MUTATED        2      0      1      1      1
  PARP14 WILD-TYPE     35     31     16     20     12
D330V7, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP14 MUTATED        3      1      1
  PARP14 WILD-TYPE     68     26     20
D330V8, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARP14 MUTATED        1      1      1      0      1      1      0
  PARP14 WILD-TYPE     17      7      9      8     35     24     12
D330V9, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PARP14 MUTATED        1      0      0      3      1      0
  PARP14 WILD-TYPE     16     32     13     29     15      7
D330V10, multiclass
        clus
vv       PARP14 MUTATED PARP14 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(331) Variable = SLCO1B3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        1      1      4      1
  SLCO1B3 WILD-TYPE     18     52     26     23
D331V1, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               4                26
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        2      1      0      4
  SLCO1B3 WILD-TYPE     33     29     34     22
D331V2, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO1B3 MUTATED        2      1      0      1      2
  SLCO1B3 WILD-TYPE     27     17     13      8     11
D331V3, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO1B3 MUTATED        4      1      0      0      1
  SLCO1B3 WILD-TYPE     28     17     12     10      9
D331V4, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               4                28
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO1B3 MUTATED        0      2      0      3      2
  SLCO1B3 WILD-TYPE     26     18     28     22     18
D331V5, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                18
  CLUS_3               0                28
  CLUS_4               3                22
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B3 MUTATED        5      0      2
  SLCO1B3 WILD-TYPE     43     53     16
D331V6, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               5                43
  CLUS_2               0                53
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO1B3 MUTATED        0      3      1      1      2
  SLCO1B3 WILD-TYPE     37     28     16     20     11
D331V7, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               3                28
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B3 MUTATED        3      2      2
  SLCO1B3 WILD-TYPE     68     25     19
D331V8, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               2                25
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLCO1B3 MUTATED        1      0      2      0      0      3      1
  SLCO1B3 WILD-TYPE     17      8      8      8     36     22     11
D331V9, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               3                22
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLCO1B3 MUTATED        1      0      0      3      3      0
  SLCO1B3 WILD-TYPE     16     32     13     29     13      7
D331V10, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               3                13
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(332) Variable = BCL9L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        2      1      3      1
  BCL9L WILD-TYPE     17     52     27     23
D332V1, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        3      1      1      2
  BCL9L WILD-TYPE     32     29     33     24
D332V2, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        1      0      1      1      0
  BCL9L WILD-TYPE     28     18     12      8     13
D332V3, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        2      0      0      0      1
  BCL9L WILD-TYPE     30     18     12     10      9
D332V4, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        1      2      1      2      1
  BCL9L WILD-TYPE     25     18     27     23     19
D332V5, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED        2      4      1
  BCL9L WILD-TYPE     46     49     17
D332V6, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        2      1      0      3      1
  BCL9L WILD-TYPE     35     30     17     18     12
D332V7, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED        6      0      1
  BCL9L WILD-TYPE     65     27     20
D332V8, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             6              65
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL9L MUTATED        0      1      2      0      0      3      0
  BCL9L WILD-TYPE     18      7      8      8     36     22     12
D332V9, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL9L MUTATED        1      1      1      2      1      0
  BCL9L WILD-TYPE     16     31     12     30     15      7
D332V10, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(333) Variable = ZNF428 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF428 MUTATED        0      1      0      2
  ZNF428 WILD-TYPE     19     52     30     22
D333V1, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              0               30
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF428 MUTATED        0      0      2      1
  ZNF428 WILD-TYPE     35     30     32     25
D333V2, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        0      0      0      0      2
  ZNF428 WILD-TYPE     29     18     13      9     11
D333V3, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5926 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T5 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        0      0      1      0      1
  ZNF428 WILD-TYPE     32     18     11     10      9
D333V4, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5926 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T5 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        0      0      1      0      1
  ZNF428 WILD-TYPE     26     20     27     25     19
D333V5, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2              117 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2J-AABV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I9 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IL       TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9J0       TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-H8-A6C1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HV-A7OL       TCGA-HV-A7OP       TCGA-HV-AA8V       TCGA-HV-AA8X 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-7918       TCGA-HZ-7925       TCGA-HZ-8637       TCGA-HZ-A49I 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A77O       TCGA-HZ-A77P       TCGA-HZ-A77Q       TCGA-HZ-A8P0 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A8P1       TCGA-HZ-A9TJ       TCGA-IB-7651       TCGA-IB-7652 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A6UG       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUQ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUR       TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-RB-AA9M       TCGA-RL-AAAS       TCGA-S4-A8RO       TCGA-US-A776 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XD-AAUG       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T3 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF428 MUTATED        1      1      0
  ZNF428 WILD-TYPE     47     52     18
D333V6, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2              117 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2J-AABV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I9 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IL       TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9J0       TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-H8-A6C1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HV-A7OL       TCGA-HV-A7OP       TCGA-HV-AA8V       TCGA-HV-AA8X 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-7918       TCGA-HZ-7925       TCGA-HZ-8637       TCGA-HZ-A49I 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A77O       TCGA-HZ-A77P       TCGA-HZ-A77Q       TCGA-HZ-A8P0 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A8P1       TCGA-HZ-A9TJ       TCGA-IB-7651       TCGA-IB-7652 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A6UG       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUQ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUR       TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-RB-AA9M       TCGA-RL-AAAS       TCGA-S4-A8RO       TCGA-US-A776 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XD-AAUG       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T3 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        1      1      0      0      0
  ZNF428 WILD-TYPE     36     30     17     21     13
D333V7, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2              117 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2J-AABV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I9 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IL       TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9J0       TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-H8-A6C1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HV-A7OL       TCGA-HV-A7OP       TCGA-HV-AA8V       TCGA-HV-AA8X 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-7918       TCGA-HZ-7925       TCGA-HZ-8637       TCGA-HZ-A49I 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A77O       TCGA-HZ-A77P       TCGA-HZ-A77Q       TCGA-HZ-A8P0 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A8P1       TCGA-HZ-A9TJ       TCGA-IB-7651       TCGA-IB-7652 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A6UG       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUQ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUR       TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-RB-AA9M       TCGA-RL-AAAS       TCGA-S4-A8RO       TCGA-US-A776 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XD-AAUG       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T3 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF428 MUTATED        2      0      0
  ZNF428 WILD-TYPE     69     27     21
D333V8, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2              117 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2J-AABV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I9 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IL       TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9J0       TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-H8-A6C1 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HV-A7OL       TCGA-HV-A7OP       TCGA-HV-AA8V       TCGA-HV-AA8X 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-7918       TCGA-HZ-7925       TCGA-HZ-8637       TCGA-HZ-A49I 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A77O       TCGA-HZ-A77P       TCGA-HZ-A77Q       TCGA-HZ-A8P0 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A8P1       TCGA-HZ-A9TJ       TCGA-IB-7651       TCGA-IB-7652 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A6UG       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUQ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUR       TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-LB-A9Q5 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A       TCGA-RB-A7B8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-RB-AA9M       TCGA-RL-AAAS       TCGA-S4-A8RO       TCGA-US-A776 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XD-AAUG       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T3 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF428 MUTATED        0      0      0      0      1      1      0
  ZNF428 WILD-TYPE     18      8     10      8     35     24     12
D333V9, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2              115 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2L-AAQA 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I9       TCGA-3A-A9IB 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ       TCGA-3A-A9IL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS       TCGA-3A-A9IU 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3A-A9J0 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273       TCGA-F2-A44G 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS       TCGA-FB-AAPU 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1       TCGA-FB-AAQ2 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-H8-A6C1       TCGA-HV-A7OL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HV-AA8V       TCGA-HV-AA8X       TCGA-HZ-7918       TCGA-HZ-7925 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-8637       TCGA-HZ-A49I       TCGA-HZ-A77O       TCGA-HZ-A77P 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A77Q       TCGA-HZ-A8P0       TCGA-HZ-A8P1       TCGA-HZ-A9TJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A6UG       TCGA-IB-A7LX 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUP       TCGA-IB-AAUQ       TCGA-IB-AAUR       TCGA-IB-AAUS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-RL-AAAS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-S4-A8RO       TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A77G       TCGA-US-A77J       TCGA-XD-AAUG       TCGA-XD-AAUH 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XD-AAUI       TCGA-XN-A8T3       TCGA-XN-A8T5       TCGA-YB-A89D 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF428 MUTATED        0      2      0      0      0      0
  ZNF428 WILD-TYPE     17     30     13     32     16      7
D333V10, multiclass
[1] "Remove cluster labels:" "ZNF428 MUTATED"        
clus
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               2              115 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2L-AAQA 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I9       TCGA-3A-A9IB 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ       TCGA-3A-A9IL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS       TCGA-3A-A9IU 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3A-A9J0 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273       TCGA-F2-A44G 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS       TCGA-FB-AAPU 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1       TCGA-FB-AAQ2 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-H8-A6C1       TCGA-HV-A7OL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HV-AA8V       TCGA-HV-AA8X       TCGA-HZ-7918       TCGA-HZ-7925 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-8637       TCGA-HZ-A49I       TCGA-HZ-A77O       TCGA-HZ-A77P 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-HZ-A77Q       TCGA-HZ-A8P0       TCGA-HZ-A8P1       TCGA-HZ-A9TJ 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A6UG       TCGA-IB-A7LX 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUP       TCGA-IB-AAUQ       TCGA-IB-AAUR       TCGA-IB-AAUS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-RL-AAAS 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-S4-A8RO       TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-US-A77G       TCGA-US-A77J       TCGA-XD-AAUG       TCGA-XD-AAUH 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-XD-AAUI       TCGA-XN-A8T3       TCGA-XN-A8T5       TCGA-YB-A89D 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 
      TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" "ZNF428 WILD-TYPE" 

Clustering(334) Variable = ARFGAP3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGAP3 MUTATED        0      2      2      0
  ARFGAP3 WILD-TYPE     19     51     28     24
D334V1, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGAP3 MUTATED        2      2      0      0
  ARFGAP3 WILD-TYPE     33     28     34     26
D334V2, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARFGAP3 MUTATED        1      0      1      0      0
  ARFGAP3 WILD-TYPE     28     18     12      9     13
D334V3, multiclass
[1] "Remove cluster labels:" "ARFGAP3 MUTATED"       
clus
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-S4-A8RO        TCGA-US-A776 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARFGAP3 MUTATED        1      0      0      0      1
  ARFGAP3 WILD-TYPE     31     18     12     10      9
D334V4, multiclass
[1] "Remove cluster labels:" "ARFGAP3 MUTATED"       
clus
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-S4-A8RO        TCGA-US-A776 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARFGAP3 MUTATED        0      2      0      2      0
  ARFGAP3 WILD-TYPE     26     18     28     23     20
D334V5, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                18
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGAP3 MUTATED        2      1      1
  ARFGAP3 WILD-TYPE     46     52     17
D334V6, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARFGAP3 MUTATED        0      0      2      0      2
  ARFGAP3 WILD-TYPE     37     31     15     21     11
D334V7, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               0                31
  CLUS_3               2                15
  CLUS_4               0                21
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGAP3 MUTATED        0      2      2
  ARFGAP3 WILD-TYPE     71     25     19
D334V8, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                25
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARFGAP3 MUTATED        1      0      1      0      0      2      0
  ARFGAP3 WILD-TYPE     17      8      9      8     36     23     12
D334V9, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARFGAP3 MUTATED        0      0      0      2      2      0
  ARFGAP3 WILD-TYPE     17     32     13     30     14      7
D334V10, multiclass
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               2                14
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(335) Variable = SALL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SALL2 MUTATED        0      3      1      1
  SALL2 WILD-TYPE     19     50     29     23
D335V1, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SALL2 MUTATED        1      2      2      0
  SALL2 WILD-TYPE     34     28     32     26
D335V2, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        2      1      0      0      0
  SALL2 WILD-TYPE     27     17     13      9     13
D335V3, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        1      1      0      1      0
  SALL2 WILD-TYPE     31     17     12      9     10
D335V4, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        2      2      0      1      0
  SALL2 WILD-TYPE     24     18     28     24     20
D335V5, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SALL2 MUTATED        1      3      1
  SALL2 WILD-TYPE     47     50     17
D335V6, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        2      0      1      1      1
  SALL2 WILD-TYPE     35     31     16     20     12
D335V7, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SALL2 MUTATED        3      2      0
  SALL2 WILD-TYPE     68     25     21
D335V8, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SALL2 MUTATED        1      0      0      0      1      2      1
  SALL2 WILD-TYPE     17      8     10      8     35     23     11
D335V9, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SALL2 MUTATED        0      2      1      1      0      1
  SALL2 WILD-TYPE     17     30     12     31     16      6
D335V10, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(336) Variable = BMP2K MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP2K MUTATED        0      3      2      0
  BMP2K WILD-TYPE     19     50     28     24
D336V1, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP2K MUTATED        3      0      1      1
  BMP2K WILD-TYPE     32     30     33     25
D336V2, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMP2K MUTATED        0      2      0      2      0
  BMP2K WILD-TYPE     29     16     13      7     13
D336V3, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             0              29
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMP2K MUTATED        2      1      0      1      0
  BMP2K WILD-TYPE     30     17     12      9     10
D336V4, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMP2K MUTATED        1      0      2      2      0
  BMP2K WILD-TYPE     25     20     26     23     20
D336V5, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP2K MUTATED        2      3      0
  BMP2K WILD-TYPE     46     50     18
D336V6, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMP2K MUTATED        1      1      1      2      0
  BMP2K WILD-TYPE     36     30     16     19     13
D336V7, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP2K MUTATED        5      0      0
  BMP2K WILD-TYPE     66     27     21
D336V8, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BMP2K MUTATED        0      1      2      0      2      0      0
  BMP2K WILD-TYPE     18      7      8      8     34     25     12
D336V9, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BMP2K MUTATED        0      2      1      2      0      0
  BMP2K WILD-TYPE     17     30     12     30     16      7
D336V10, multiclass
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(337) Variable = RAI2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI2 MUTATED        2      0      1      1
  RAI2 WILD-TYPE     17     53     29     23
D337V1, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            0             53
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI2 MUTATED        0      2      1      1
  RAI2 WILD-TYPE     35     28     33     25
D337V2, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI2 MUTATED        1      2      1      0      0
  RAI2 WILD-TYPE     28     16     12      9     13
D337V3, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            2             16
  CLUS_3            1             12
  CLUS_4            0              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI2 MUTATED        2      2      0      0      0
  RAI2 WILD-TYPE     30     16     12     10     10
D337V4, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            2             16
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI2 MUTATED        0      0      1      2      1
  RAI2 WILD-TYPE     26     20     27     23     19
D337V5, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI2 MUTATED        2      2      0
  RAI2 WILD-TYPE     46     51     18
D337V6, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI2 MUTATED        0      2      1      1      0
  RAI2 WILD-TYPE     37     29     16     20     13
D337V7, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI2 MUTATED        2      2      0
  RAI2 WILD-TYPE     69     25     21
D337V8, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAI2 MUTATED        2      0      0      1      0      1      0
  RAI2 WILD-TYPE     16      8     10      7     36     24     12
D337V9, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            0             36
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAI2 MUTATED        0      1      1      2      0      0
  RAI2 WILD-TYPE     17     31     12     30     16      7
D337V10, multiclass
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(338) Variable = COL27A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL27A1 MUTATED        2      0      2      0
  COL27A1 WILD-TYPE     17     53     28     24
D338V1, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               0                53
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL27A1 MUTATED        4      0      0      0
  COL27A1 WILD-TYPE     31     30     34     26
D338V2, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               4                31
  CLUS_2               0                30
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL27A1 MUTATED        0      0      0      1      0
  COL27A1 WILD-TYPE     29     18     13      8     13
D338V3, multiclass
[1] "Remove cluster labels:" "COL27A1 MUTATED"       
clus
  COL27A1 MUTATED COL27A1 WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-Z5-AAPL 
"COL27A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL27A1 MUTATED        1      0      0      0      0
  COL27A1 WILD-TYPE     31     18     12     10     10
D338V4, multiclass
[1] "Remove cluster labels:" "COL27A1 MUTATED"       
clus
  COL27A1 MUTATED COL27A1 WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" "COL27A1 WILD-TYPE" 
       TCGA-Z5-AAPL 
"COL27A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL27A1 MUTATED        2      0      0      1      1
  COL27A1 WILD-TYPE     24     20     28     24     19
D338V5, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL27A1 MUTATED        2      2      0
  COL27A1 WILD-TYPE     46     51     18
D338V6, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL27A1 MUTATED        1      1      0      2      0
  COL27A1 WILD-TYPE     36     30     17     19     13
D338V7, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL27A1 MUTATED        4      0      0
  COL27A1 WILD-TYPE     67     27     21
D338V8, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL27A1 MUTATED        1      0      1      1      0      0      0
  COL27A1 WILD-TYPE     17      8      9      7     36     25     12
D338V9, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL27A1 MUTATED        1      0      1      1      0      0
  COL27A1 WILD-TYPE     16     32     12     31     16      7
D338V10, multiclass
        clus
vv       COL27A1 MUTATED COL27A1 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(339) Variable = CCPG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED        0      2      2      1
  CCPG1 WILD-TYPE     19     51     28     23
D339V1, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED        2      2      1      0
  CCPG1 WILD-TYPE     33     28     33     26
D339V2, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCPG1 MUTATED        2      2      0      0      0
  CCPG1 WILD-TYPE     27     16     13      9     13
D339V3, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCPG1 MUTATED        3      1      0      0      0
  CCPG1 WILD-TYPE     29     17     12     10     10
D339V4, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCPG1 MUTATED        2      1      0      2      0
  CCPG1 WILD-TYPE     24     19     28     23     20
D339V5, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCPG1 MUTATED        2      3      0
  CCPG1 WILD-TYPE     46     50     18
D339V6, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCPG1 MUTATED        3      0      2      0      0
  CCPG1 WILD-TYPE     34     31     15     21     13
D339V7, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCPG1 MUTATED        3      2      0
  CCPG1 WILD-TYPE     68     25     21
D339V8, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCPG1 MUTATED        2      1      0      0      1      1      0
  CCPG1 WILD-TYPE     16      7     10      8     35     24     12
D339V9, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCPG1 MUTATED        0      3      0      2      0      0
  CCPG1 WILD-TYPE     17     29     13     30     16      7
D339V10, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(340) Variable = TERF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TERF1 MUTATED        1      1      1      0
  TERF1 WILD-TYPE     18     52     29     24
D340V1, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TERF1 MUTATED        1      0      1      1
  TERF1 WILD-TYPE     34     30     33     25
D340V2, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TERF1 MUTATED        1      0      0      1      1
  TERF1 WILD-TYPE     28     18     13      8     12
D340V3, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TERF1 MUTATED        1      0      1      1      0
  TERF1 WILD-TYPE     31     18     11      9     10
D340V4, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TERF1 MUTATED        0      0      1      1      1
  TERF1 WILD-TYPE     26     20     27     24     19
D340V5, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TERF1 MUTATED        1      2      0
  TERF1 WILD-TYPE     47     51     18
D340V6, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TERF1 MUTATED        2      1      0      0      0
  TERF1 WILD-TYPE     35     30     17     21     13
D340V7, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TERF1 MUTATED        2      1      0
  TERF1 WILD-TYPE     69     26     21
D340V8, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TERF1 MUTATED        0      0      0      1      2      0      0
  TERF1 WILD-TYPE     18      8     10      7     34     25     12
D340V9, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TERF1 MUTATED        0      1      1      1      0      0
  TERF1 WILD-TYPE     17     31     12     31     16      7
D340V10, multiclass
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(341) Variable = HIST1H1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        0      3      1      1
  HIST1H1B WILD-TYPE     19     50     29     23
D341V1, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                3                 50
  CLUS_3                1                 29
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        1      1      2      1
  HIST1H1B WILD-TYPE     34     29     32     25
D341V2, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 29
  CLUS_3                2                 32
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        1      0      0      1      0
  HIST1H1B WILD-TYPE     28     18     13      8     13
D341V3, multiclass
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUV 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        2      0      0      0      0
  HIST1H1B WILD-TYPE     30     18     12     10     10
D341V4, multiclass
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUV 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        1      0      1      2      1
  HIST1H1B WILD-TYPE     25     20     27     23     19
D341V5, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                2                 23
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        3      2      0
  HIST1H1B WILD-TYPE     45     51     18
D341V6, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                2                 51
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        2      1      1      1      0
  HIST1H1B WILD-TYPE     35     30     16     20     13
D341V7, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                1                 30
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        4      1      0
  HIST1H1B WILD-TYPE     67     26     21
D341V8, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                4                 67
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1B MUTATED        1      1      1      0      1      1      0
  HIST1H1B WILD-TYPE     17      7      9      8     35     24     12
D341V9, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                1                 35
  CLUS_6                1                 24
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H1B MUTATED        2      1      0      2      0      0
  HIST1H1B WILD-TYPE     15     31     13     30     16      7
D341V10, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(342) Variable = ZMYM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        0      2      1      1
  ZMYM4 WILD-TYPE     19     51     29     23
D342V1, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        1      1      1      1
  ZMYM4 WILD-TYPE     34     29     33     25
D342V2, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        2      0      0      1      0
  ZMYM4 WILD-TYPE     27     18     13      8     13
D342V3, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        2      0      0      1      0
  ZMYM4 WILD-TYPE     30     18     12      9     10
D342V4, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        1      2      0      1      0
  ZMYM4 WILD-TYPE     25     18     28     24     20
D342V5, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              18
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        1      1      2
  ZMYM4 WILD-TYPE     47     52     16
D342V6, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        0      0      0      3      1
  ZMYM4 WILD-TYPE     37     31     17     18     12
D342V7, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        2      0      2
  ZMYM4 WILD-TYPE     69     27     19
D342V8, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYM4 MUTATED        0      0      1      0      1      1      1
  ZMYM4 WILD-TYPE     18      8      9      8     35     24     11
D342V9, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM4 MUTATED        0      0      1      1      1      1
  ZMYM4 WILD-TYPE     17     32     12     31     15      6
D342V10, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(343) Variable = TSPYL6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL6 MUTATED        0      2      1      1
  TSPYL6 WILD-TYPE     19     51     29     23
D343V1, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL6 MUTATED        1      0      2      1
  TSPYL6 WILD-TYPE     34     30     32     25
D343V2, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPYL6 MUTATED        0      0      0      1      1
  TSPYL6 WILD-TYPE     29     18     13      8     12
D343V3, multiclass
[1] "Remove cluster labels:" "TSPYL6 MUTATED"        
clus
  TSPYL6 MUTATED TSPYL6 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPYL6 MUTATED        1      0      1      0      0
  TSPYL6 WILD-TYPE     31     18     11     10     10
D343V4, multiclass
[1] "Remove cluster labels:" "TSPYL6 MUTATED"        
clus
  TSPYL6 MUTATED TSPYL6 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" "TSPYL6 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPYL6 MUTATED        2      1      0      1      0
  TSPYL6 WILD-TYPE     24     19     28     24     20
D343V5, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL6 MUTATED        1      2      1
  TSPYL6 WILD-TYPE     47     51     17
D343V6, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPYL6 MUTATED        2      0      0      1      1
  TSPYL6 WILD-TYPE     35     31     17     20     12
D343V7, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL6 MUTATED        3      0      1
  TSPYL6 WILD-TYPE     68     27     20
D343V8, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSPYL6 MUTATED        0      0      1      0      2      0      1
  TSPYL6 WILD-TYPE     18      8      9      8     34     25     11
D343V9, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSPYL6 MUTATED        2      1      0      1      0      0
  TSPYL6 WILD-TYPE     15     31     13     31     16      7
D343V10, multiclass
        clus
vv       TSPYL6 MUTATED TSPYL6 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(344) Variable = SULT1C3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C3 MUTATED        1      2      0      1
  SULT1C3 WILD-TYPE     18     51     30     23
D344V1, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               0                30
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C3 MUTATED        1      0      2      1
  SULT1C3 WILD-TYPE     34     30     32     25
D344V2, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                30
  CLUS_3               2                32
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULT1C3 MUTATED        0      2      1      0      0
  SULT1C3 WILD-TYPE     29     16     12      9     13
D344V3, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               2                16
  CLUS_3               1                12
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULT1C3 MUTATED        0      2      1      0      0
  SULT1C3 WILD-TYPE     32     16     11     10     10
D344V4, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               0                32
  CLUS_2               2                16
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULT1C3 MUTATED        2      0      1      0      1
  SULT1C3 WILD-TYPE     24     20     27     25     19
D344V5, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               0                25
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        1      3      0
  SULT1C3 WILD-TYPE     47     50     18
D344V6, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULT1C3 MUTATED        3      1      0      0      0
  SULT1C3 WILD-TYPE     34     30     17     21     13
D344V7, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               0                21
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        4      0      0
  SULT1C3 WILD-TYPE     67     27     21
D344V8, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SULT1C3 MUTATED        0      0      0      0      2      2      0
  SULT1C3 WILD-TYPE     18      8     10      8     34     23     12
D344V9, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SULT1C3 MUTATED        0      2      1      1      0      0
  SULT1C3 WILD-TYPE     17     30     12     31     16      7
D344V10, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(345) Variable = SH3PXD2A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3PXD2A MUTATED        2      2      2      1
  SH3PXD2A WILD-TYPE     17     51     28     23
D345V1, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 51
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3PXD2A MUTATED        2      1      2      2
  SH3PXD2A WILD-TYPE     33     29     32     24
D345V2, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                1                 29
  CLUS_3                2                 32
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3PXD2A MUTATED        4      0      1      1      0
  SH3PXD2A WILD-TYPE     25     18     12      8     13
D345V3, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                4                 25
  CLUS_2                0                 18
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3PXD2A MUTATED        5      0      0      0      1
  SH3PXD2A WILD-TYPE     27     18     12     10      9
D345V4, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                5                 27
  CLUS_2                0                 18
  CLUS_3                0                 12
  CLUS_4                0                 10
  CLUS_5                1                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3PXD2A MUTATED        1      1      1      3      1
  SH3PXD2A WILD-TYPE     25     19     27     22     19
D345V5, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                1                 27
  CLUS_4                3                 22
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SH3PXD2A MUTATED        4      2      1
  SH3PXD2A WILD-TYPE     44     51     17
D345V6, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                2                 51
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3PXD2A MUTATED        2      1      2      1      1
  SH3PXD2A WILD-TYPE     35     30     15     20     12
D345V7, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                1                 30
  CLUS_3                2                 15
  CLUS_4                1                 20
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SH3PXD2A MUTATED        4      2      1
  SH3PXD2A WILD-TYPE     67     25     20
D345V8, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                4                 67
  CLUS_2                2                 25
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SH3PXD2A MUTATED        1      0      1      0      2      2      1
  SH3PXD2A WILD-TYPE     17      8      9      8     34     23     11
D345V9, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                2                 23
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3PXD2A MUTATED        1      1      0      3      2      0
  SH3PXD2A WILD-TYPE     16     31     13     29     14      7
D345V10, multiclass
        clus
vv       SH3PXD2A MUTATED SH3PXD2A WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                3                 29
  CLUS_5                2                 14
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(346) Variable = ZSWIM4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM4 MUTATED        1      3      1      0
  ZSWIM4 WILD-TYPE     18     50     29     24
D346V1, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM4 MUTATED        2      0      2      1
  ZSWIM4 WILD-TYPE     33     30     32     25
D346V2, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZSWIM4 MUTATED        2      0      1      1      0
  ZSWIM4 WILD-TYPE     27     18     12      8     13
D346V3, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZSWIM4 MUTATED        3      0      1      0      0
  ZSWIM4 WILD-TYPE     29     18     11     10     10
D346V4, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZSWIM4 MUTATED        1      1      1      1      0
  ZSWIM4 WILD-TYPE     25     19     27     24     20
D346V5, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZSWIM4 MUTATED        2      2      0
  ZSWIM4 WILD-TYPE     46     51     18
D346V6, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZSWIM4 MUTATED        1      1      0      1      1
  ZSWIM4 WILD-TYPE     36     30     17     20     12
D346V7, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZSWIM4 MUTATED        4      0      0
  ZSWIM4 WILD-TYPE     67     27     21
D346V8, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZSWIM4 MUTATED        0      2      1      0      1      0      0
  ZSWIM4 WILD-TYPE     18      6      9      8     35     25     12
D346V9, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              2                6
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZSWIM4 MUTATED        3      0      0      1      0      0
  ZSWIM4 WILD-TYPE     14     32     13     31     16      7
D346V10, multiclass
        clus
vv       ZSWIM4 MUTATED ZSWIM4 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(347) Variable = CCR3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR3 MUTATED        0      0      1      3
  CCR3 WILD-TYPE     19     53     29     21
D347V1, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            0             53
  CLUS_3            1             29
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR3 MUTATED        0      0      1      3
  CCR3 WILD-TYPE     35     30     33     23
D347V2, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            3             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCR3 MUTATED        1      0      0      0      1
  CCR3 WILD-TYPE     28     18     13      9     12
D347V3, multiclass
[1] "Remove cluster labels:" "CCR3 MUTATED"          
clus
  CCR3 MUTATED CCR3 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-AA2A 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCR3 MUTATED        1      0      1      0      0
  CCR3 WILD-TYPE     31     18     11     10     10
D347V4, multiclass
[1] "Remove cluster labels:" "CCR3 MUTATED"          
clus
  CCR3 MUTATED CCR3 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-AA2A 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCR3 MUTATED        1      0      0      0      3
  CCR3 WILD-TYPE     25     20     28     25     17
D347V5, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            0             25
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        1      3      0
  CCR3 WILD-TYPE     47     50     18
D347V6, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCR3 MUTATED        0      3      1      0      0
  CCR3 WILD-TYPE     37     28     16     21     13
D347V7, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            3             28
  CLUS_3            1             16
  CLUS_4            0             21
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        4      0      0
  CCR3 WILD-TYPE     67     27     21
D347V8, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCR3 MUTATED        0      0      0      1      1      2      0
  CCR3 WILD-TYPE     18      8     10      7     35     23     12
D347V9, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCR3 MUTATED        1      1      2      0      0      0
  CCR3 WILD-TYPE     16     31     11     32     16      7
D347V10, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            2             11
  CLUS_4            0             32
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(348) Variable = CPLX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX3 MUTATED        0      3      0      1
  CPLX3 WILD-TYPE     19     50     30     23
D348V1, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             0              30
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX3 MUTATED        1      1      2      0
  CPLX3 WILD-TYPE     34     29     32     26
D348V2, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPLX3 MUTATED        1      0      0      1      0
  CPLX3 WILD-TYPE     28     18     13      8     13
D348V3, multiclass
[1] "Remove cluster labels:" "CPLX3 MUTATED"         
clus
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABO      TCGA-2J-AABR 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPLX3 MUTATED        1      0      0      1      0
  CPLX3 WILD-TYPE     31     18     12      9     10
D348V4, multiclass
[1] "Remove cluster labels:" "CPLX3 MUTATED"         
clus
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABO      TCGA-2J-AABR 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPLX3 MUTATED        1      1      1      1      0
  CPLX3 WILD-TYPE     25     19     27     24     20
D348V5, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        2      2      0
  CPLX3 WILD-TYPE     46     51     18
D348V6, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPLX3 MUTATED        0      1      1      1      1
  CPLX3 WILD-TYPE     37     30     16     20     12
D348V7, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        2      2      0
  CPLX3 WILD-TYPE     69     25     21
D348V8, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPLX3 MUTATED        2      0      0      0      1      1      0
  CPLX3 WILD-TYPE     16      8     10      8     35     24     12
D348V9, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPLX3 MUTATED        0      1      1      2      0      0
  CPLX3 WILD-TYPE     17     31     12     30     16      7
D348V10, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(349) Variable = RAD17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD17 MUTATED        2      1      1      1
  RAD17 WILD-TYPE     17     52     29     23
D349V1, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD17 MUTATED        2      0      1      2
  RAD17 WILD-TYPE     33     30     33     24
D349V2, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD17 MUTATED        1      2      2      0      0
  RAD17 WILD-TYPE     28     16     11      9     13
D349V3, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              16
  CLUS_3             2              11
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD17 MUTATED        0      2      1      1      1
  RAD17 WILD-TYPE     32     16     11      9      9
D349V4, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             2              16
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD17 MUTATED        1      0      2      0      2
  RAD17 WILD-TYPE     25     20     26     25     18
D349V5, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD17 MUTATED        1      4      0
  RAD17 WILD-TYPE     47     49     18
D349V6, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD17 MUTATED        1      3      0      1      0
  RAD17 WILD-TYPE     36     28     17     20     13
D349V7, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD17 MUTATED        5      0      0
  RAD17 WILD-TYPE     66     27     21
D349V8, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAD17 MUTATED        0      1      0      1      2      1      0
  RAD17 WILD-TYPE     18      7     10      7     34     24     12
D349V9, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAD17 MUTATED        1      1      2      0      1      0
  RAD17 WILD-TYPE     16     31     11     32     15      7
D349V10, multiclass
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             2              11
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(350) Variable = RANBP9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP9 MUTATED        0      4      0      1
  RANBP9 WILD-TYPE     19     49     30     23
D350V1, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              4               49
  CLUS_3              0               30
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP9 MUTATED        2      1      1      1
  RANBP9 WILD-TYPE     33     29     33     25
D350V2, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP9 MUTATED        2      0      1      0      0
  RANBP9 WILD-TYPE     27     18     12      9     13
D350V3, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP9 MUTATED        2      0      0      0      1
  RANBP9 WILD-TYPE     30     18     12     10      9
D350V4, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP9 MUTATED        1      1      1      0      1
  RANBP9 WILD-TYPE     25     19     27     25     19
D350V5, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              0               25
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP9 MUTATED        0      2      2
  RANBP9 WILD-TYPE     48     51     16
D350V6, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              0               48
  CLUS_2              2               51
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP9 MUTATED        2      0      0      1      1
  RANBP9 WILD-TYPE     35     31     17     20     12
D350V7, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP9 MUTATED        2      0      2
  RANBP9 WILD-TYPE     69     27     19
D350V8, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RANBP9 MUTATED        0      0      0      1      2      0      1
  RANBP9 WILD-TYPE     18      8     10      7     34     25     11
D350V9, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RANBP9 MUTATED        0      2      0      0      1      1
  RANBP9 WILD-TYPE     17     30     13     32     15      6
D350V10, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              0               32
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(351) Variable = RASAL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        1      1      2      1
  RASAL2 WILD-TYPE     18     52     28     23
D351V1, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        3      0      2      0
  RASAL2 WILD-TYPE     32     30     32     26
D351V2, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        0      1      0      1      0
  RASAL2 WILD-TYPE     29     17     13      8     13
D351V3, multiclass
[1] "Remove cluster labels:" "RASAL2 MUTATED"        
clus
  RASAL2 MUTATED RASAL2 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        1      1      0      0      0
  RASAL2 WILD-TYPE     31     17     12     10     10
D351V4, multiclass
[1] "Remove cluster labels:" "RASAL2 MUTATED"        
clus
  RASAL2 MUTATED RASAL2 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        1      0      2      2      0
  RASAL2 WILD-TYPE     25     20     26     23     20
D351V5, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED        2      3      0
  RASAL2 WILD-TYPE     46     50     18
D351V6, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        1      0      1      3      0
  RASAL2 WILD-TYPE     36     31     16     18     13
D351V7, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              3               18
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED        4      1      0
  RASAL2 WILD-TYPE     67     26     21
D351V8, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASAL2 MUTATED        1      0      1      0      2      0      0
  RASAL2 WILD-TYPE     17      8      9      8     34     25     12
D351V9, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASAL2 MUTATED        0      2      0      2      0      0
  RASAL2 WILD-TYPE     17     30     13     30     16      7
D351V10, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(352) Variable = CD86 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD86 MUTATED        1      2      1      0
  CD86 WILD-TYPE     18     51     29     24
D352V1, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD86 MUTATED        1      0      3      0
  CD86 WILD-TYPE     34     30     31     26
D352V2, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            0             30
  CLUS_3            3             31
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD86 MUTATED        2      0      0      1      0
  CD86 WILD-TYPE     27     18     13      8     13
D352V3, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD86 MUTATED        3      0      0      0      0
  CD86 WILD-TYPE     29     18     12     10     10
D352V4, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD86 MUTATED        1      0      2      1      0
  CD86 WILD-TYPE     25     20     26     24     20
D352V5, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        2      2      0
  CD86 WILD-TYPE     46     51     18
D352V6, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD86 MUTATED        2      0      0      2      0
  CD86 WILD-TYPE     35     31     17     19     13
D352V7, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD86 MUTATED        4      0      0
  CD86 WILD-TYPE     67     27     21
D352V8, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD86 MUTATED        0      0      1      0      3      0      0
  CD86 WILD-TYPE     18      8      9      8     33     25     12
D352V9, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD86 MUTATED        1      2      0      1      0      0
  CD86 WILD-TYPE     16     30     13     31     16      7
D352V10, multiclass
        clus
vv       CD86 MUTATED CD86 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(353) Variable = OR1N2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1N2 MUTATED        1      0      2      3
  OR1N2 WILD-TYPE     18     53     28     21
D353V1, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1N2 MUTATED        2      0      3      1
  OR1N2 WILD-TYPE     33     30     31     25
D353V2, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1N2 MUTATED        2      0      1      1      0
  OR1N2 WILD-TYPE     27     18     12      8     13
D353V3, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1N2 MUTATED        4      0      0      0      0
  OR1N2 WILD-TYPE     28     18     12     10     10
D353V4, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1N2 MUTATED        0      0      3      1      2
  OR1N2 WILD-TYPE     26     20     25     24     18
D353V5, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        2      3      1
  OR1N2 WILD-TYPE     46     50     17
D353V6, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1N2 MUTATED        0      3      1      2      0
  OR1N2 WILD-TYPE     37     28     16     19     13
D353V7, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1N2 MUTATED        4      1      1
  OR1N2 WILD-TYPE     67     26     20
D353V8, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR1N2 MUTATED        1      0      1      0      1      3      0
  OR1N2 WILD-TYPE     17      8      9      8     35     22     12
D353V9, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR1N2 MUTATED        0      2      1      2      1      0
  OR1N2 WILD-TYPE     17     30     12     30     15      7
D353V10, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(354) Variable = KIAA0408 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0408 MUTATED        0      3      2      1
  KIAA0408 WILD-TYPE     19     50     28     23
D354V1, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                3                 50
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0408 MUTATED        4      0      1      1
  KIAA0408 WILD-TYPE     31     30     33     25
D354V2, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                4                 31
  CLUS_2                0                 30
  CLUS_3                1                 33
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        2      1      1      1      1
  KIAA0408 WILD-TYPE     27     17     12      8     12
D354V3, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                1                 17
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        3      1      1      0      1
  KIAA0408 WILD-TYPE     29     17     11     10      9
D354V4, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                3                 29
  CLUS_2                1                 17
  CLUS_3                1                 11
  CLUS_4                0                 10
  CLUS_5                1                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        3      0      1      1      1
  KIAA0408 WILD-TYPE     23     20     27     24     19
D354V5, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                1                 24
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0408 MUTATED        2      3      1
  KIAA0408 WILD-TYPE     46     50     17
D354V6, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                3                 50
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        3      2      0      1      0
  KIAA0408 WILD-TYPE     34     29     17     20     13
D354V7, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                2                 29
  CLUS_3                0                 17
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0408 MUTATED        5      0      1
  KIAA0408 WILD-TYPE     66     27     20
D354V8, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                5                 66
  CLUS_2                0                 27
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0408 MUTATED        0      0      1      0      2      3      0
  KIAA0408 WILD-TYPE     18      8      9      8     34     22     12
D354V9, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                3                 22
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0408 MUTATED        0      4      0      1      1      0
  KIAA0408 WILD-TYPE     17     28     13     31     15      7
D354V10, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                4                 28
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(355) Variable = GPRIN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN2 MUTATED        0      3      1      0
  GPRIN2 WILD-TYPE     19     50     29     24
D355V1, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN2 MUTATED        2      1      1      0
  GPRIN2 WILD-TYPE     33     29     33     26
D355V2, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRIN2 MUTATED        2      0      0      1      0
  GPRIN2 WILD-TYPE     27     18     13      8     13
D355V3, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRIN2 MUTATED        3      0      0      0      0
  GPRIN2 WILD-TYPE     29     18     12     10     10
D355V4, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRIN2 MUTATED        1      1      1      1      0
  GPRIN2 WILD-TYPE     25     19     27     24     20
D355V5, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN2 MUTATED        3      1      0
  GPRIN2 WILD-TYPE     45     52     18
D355V6, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRIN2 MUTATED        2      0      0      1      1
  GPRIN2 WILD-TYPE     35     31     17     20     12
D355V7, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN2 MUTATED        3      0      1
  GPRIN2 WILD-TYPE     68     27     20
D355V8, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPRIN2 MUTATED        1      0      1      0      1      0      1
  GPRIN2 WILD-TYPE     17      8      9      8     35     25     11
D355V9, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPRIN2 MUTATED        2      0      0      2      0      0
  GPRIN2 WILD-TYPE     15     32     13     30     16      7
D355V10, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(356) Variable = HSP90AA1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        0      1      1      2
  HSP90AA1 WILD-TYPE     19     52     29     22
D356V1, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                1                 52
  CLUS_3                1                 29
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        1      2      1      0
  HSP90AA1 WILD-TYPE     34     28     33     26
D356V2, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                2                 28
  CLUS_3                1                 33
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        1      0      0      2      0
  HSP90AA1 WILD-TYPE     28     18     13      7     13
D356V3, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                0                 18
  CLUS_3                0                 13
  CLUS_4                2                  7
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        2      0      0      1      0
  HSP90AA1 WILD-TYPE     30     18     12      9     10
D356V4, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                0                 18
  CLUS_3                0                 12
  CLUS_4                1                  9
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        0      3      0      1      0
  HSP90AA1 WILD-TYPE     26     17     28     24     20
D356V5, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 17
  CLUS_3                0                 28
  CLUS_4                1                 24
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        1      1      2
  HSP90AA1 WILD-TYPE     47     52     16
D356V6, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                1                 52
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        1      0      0      3      0
  HSP90AA1 WILD-TYPE     36     31     17     18     13
D356V7, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                0                 31
  CLUS_3                0                 17
  CLUS_4                3                 18
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        2      0      2
  HSP90AA1 WILD-TYPE     69     27     19
D356V8, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                0                 27
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSP90AA1 MUTATED        0      0      1      0      0      1      2
  HSP90AA1 WILD-TYPE     18      8      9      8     36     24     10
D356V9, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                0                 36
  CLUS_6                1                 24
  CLUS_7                2                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSP90AA1 MUTATED        0      1      0      1      0      2
  HSP90AA1 WILD-TYPE     17     31     13     31     16      5
D356V10, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                0                 16
  CLUS_6                2                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(357) Variable = SHPRH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHPRH MUTATED        1      2      2      0
  SHPRH WILD-TYPE     18     51     28     24
D357V1, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHPRH MUTATED        3      0      1      1
  SHPRH WILD-TYPE     32     30     33     25
D357V2, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHPRH MUTATED        0      1      0      1      1
  SHPRH WILD-TYPE     29     17     13      8     12
D357V3, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHPRH MUTATED        1      1      1      0      0
  SHPRH WILD-TYPE     31     17     11     10     10
D357V4, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHPRH MUTATED        1      0      2      1      1
  SHPRH WILD-TYPE     25     20     26     24     19
D357V5, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SHPRH MUTATED        3      2      0
  SHPRH WILD-TYPE     45     51     18
D357V6, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHPRH MUTATED        2      1      0      2      0
  SHPRH WILD-TYPE     35     30     17     19     13
D357V7, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SHPRH MUTATED        5      0      0
  SHPRH WILD-TYPE     66     27     21
D357V8, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SHPRH MUTATED        0      0      1      1      2      0      0
  SHPRH WILD-TYPE     18      8      9      7     34     25     12
D357V9, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SHPRH MUTATED        0      2      1      1      0      0
  SHPRH WILD-TYPE     17     30     12     31     16      7
D357V10, multiclass
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(358) Variable = CCKAR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCKAR MUTATED        0      1      1      2
  CCKAR WILD-TYPE     19     52     29     22
D358V1, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCKAR MUTATED        1      2      0      1
  CCKAR WILD-TYPE     34     28     34     25
D358V2, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCKAR MUTATED        0      0      0      2      0
  CCKAR WILD-TYPE     29     18     13      7     13
D358V3, multiclass
[1] "Remove cluster labels:" "CCKAR MUTATED"         
clus
  CCKAR MUTATED CCKAR WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5924      TCGA-FZ-5926 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCKAR MUTATED        1      0      0      1      0
  CCKAR WILD-TYPE     31     18     12      9     10
D358V4, multiclass
[1] "Remove cluster labels:" "CCKAR MUTATED"         
clus
  CCKAR MUTATED CCKAR WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5924      TCGA-FZ-5926 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" "CCKAR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCKAR MUTATED        0      1      0      1      1
  CCKAR WILD-TYPE     26     19     28     24     19
D358V5, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCKAR MUTATED        1      0      2
  CCKAR WILD-TYPE     47     53     16
D358V6, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             1              47
  CLUS_2             0              53
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCKAR MUTATED        0      0      0      2      1
  CCKAR WILD-TYPE     37     31     17     19     12
D358V7, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCKAR MUTATED        1      0      2
  CCKAR WILD-TYPE     70     27     19
D358V8, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             1              70
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCKAR MUTATED        0      0      1      1      0      0      1
  CCKAR WILD-TYPE     18      8      9      7     36     25     11
D358V9, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCKAR MUTATED        0      0      0      1      1      1
  CCKAR WILD-TYPE     17     32     13     31     15      6
D358V10, multiclass
        clus
vv       CCKAR MUTATED CCKAR WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(359) Variable = CHRNA9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA9 MUTATED        0      4      0      0
  CHRNA9 WILD-TYPE     19     49     30     24
D359V1, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              4               49
  CLUS_3              0               30
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA9 MUTATED        3      0      1      0
  CHRNA9 WILD-TYPE     32     30     33     26
D359V2, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNA9 MUTATED        2      0      1      1      0
  CHRNA9 WILD-TYPE     27     18     12      8     13
D359V3, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNA9 MUTATED        2      0      1      1      0
  CHRNA9 WILD-TYPE     30     18     11      9     10
D359V4, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNA9 MUTATED        1      1      1      1      0
  CHRNA9 WILD-TYPE     25     19     27     24     20
D359V5, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        3      1      0
  CHRNA9 WILD-TYPE     45     52     18
D359V6, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNA9 MUTATED        1      1      1      0      1
  CHRNA9 WILD-TYPE     36     30     16     21     12
D359V7, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA9 MUTATED        3      0      1
  CHRNA9 WILD-TYPE     68     27     20
D359V8, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHRNA9 MUTATED        0      0      0      0      2      2      0
  CHRNA9 WILD-TYPE     18      8     10      8     34     23     12
D359V9, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHRNA9 MUTATED        0      2      0      1      1      0
  CHRNA9 WILD-TYPE     17     30     13     31     15      7
D359V10, multiclass
        clus
vv       CHRNA9 MUTATED CHRNA9 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(360) Variable = SH2D2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH2D2A MUTATED        1      3      1      0
  SH2D2A WILD-TYPE     18     50     29     24
D360V1, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH2D2A MUTATED        1      0      3      1
  SH2D2A WILD-TYPE     34     30     31     25
D360V2, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              3               31
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2D2A MUTATED        0      0      1      1      1
  SH2D2A WILD-TYPE     29     18     12      8     12
D360V3, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              0               29
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2D2A MUTATED        1      0      0      0      2
  SH2D2A WILD-TYPE     31     18     12     10      8
D360V4, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              1               31
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              2                8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2D2A MUTATED        0      0      3      1      1
  SH2D2A WILD-TYPE     26     20     25     24     19
D360V5, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              3               25
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH2D2A MUTATED        2      3      0
  SH2D2A WILD-TYPE     46     50     18
D360V6, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2D2A MUTATED        2      1      0      2      0
  SH2D2A WILD-TYPE     35     30     17     19     13
D360V7, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH2D2A MUTATED        5      0      0
  SH2D2A WILD-TYPE     66     27     21
D360V8, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SH2D2A MUTATED        0      1      1      1      2      0      0
  SH2D2A WILD-TYPE     18      7      9      7     34     25     12
D360V9, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH2D2A MUTATED        1      2      1      1      0      0
  SH2D2A WILD-TYPE     16     30     12     31     16      7
D360V10, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(361) Variable = SLC9A11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A11 MUTATED        0      2      2      1
  SLC9A11 WILD-TYPE     19     51     28     23
D361V1, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A11 MUTATED        4      1      0      0
  SLC9A11 WILD-TYPE     31     29     34     26
D361V2, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               4                31
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        3      0      0      2      0
  SLC9A11 WILD-TYPE     26     18     13      7     13
D361V3, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        4      0      0      1      0
  SLC9A11 WILD-TYPE     28     18     12      9     10
D361V4, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               4                28
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        0      1      1      3      0
  SLC9A11 WILD-TYPE     26     19     27     22     20
D361V5, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               3                22
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A11 MUTATED        4      1      0
  SLC9A11 WILD-TYPE     44     52     18
D361V6, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               4                44
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        1      0      1      2      1
  SLC9A11 WILD-TYPE     36     31     16     19     12
D361V7, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A11 MUTATED        3      1      1
  SLC9A11 WILD-TYPE     68     26     20
D361V8, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC9A11 MUTATED        1      0      1      0      2      1      0
  SLC9A11 WILD-TYPE     17      8      9      8     34     24     12
D361V9, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC9A11 MUTATED        0      1      0      3      1      0
  SLC9A11 WILD-TYPE     17     31     13     29     15      7
D361V10, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(362) Variable = P2RY1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY1 MUTATED        0      5      1      0
  P2RY1 WILD-TYPE     19     48     29     24
D362V1, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY1 MUTATED        3      0      3      0
  P2RY1 WILD-TYPE     32     30     31     26
D362V2, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY1 MUTATED        3      0      1      1      1
  P2RY1 WILD-TYPE     26     18     12      8     12
D362V3, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY1 MUTATED        4      0      2      0      0
  P2RY1 WILD-TYPE     28     18     10     10     10
D362V4, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY1 MUTATED        2      0      3      1      0
  P2RY1 WILD-TYPE     24     20     25     24     20
D362V5, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        3      3      0
  P2RY1 WILD-TYPE     45     50     18
D362V6, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY1 MUTATED        4      1      0      1      0
  P2RY1 WILD-TYPE     33     30     17     20     13
D362V7, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY1 MUTATED        6      0      0
  P2RY1 WILD-TYPE     65     27     21
D362V8, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  P2RY1 MUTATED        0      0      1      0      4      1      0
  P2RY1 WILD-TYPE     18      8      9      8     32     24     12
D362V9, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  P2RY1 MUTATED        0      5      0      1      0      0
  P2RY1 WILD-TYPE     17     27     13     31     16      7
D362V10, multiclass
        clus
vv       P2RY1 MUTATED P2RY1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             5              27
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(363) Variable = SCYL3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL3 MUTATED        3      0      1      0
  SCYL3 WILD-TYPE     16     53     29     24
D363V1, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             0              53
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL3 MUTATED        2      0      2      0
  SCYL3 WILD-TYPE     33     30     32     26
D363V2, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCYL3 MUTATED        1      1      0      1      0
  SCYL3 WILD-TYPE     28     17     13      8     13
D363V3, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCYL3 MUTATED        2      1      0      0      0
  SCYL3 WILD-TYPE     30     17     12     10     10
D363V4, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCYL3 MUTATED        2      0      1      1      0
  SCYL3 WILD-TYPE     24     20     27     24     20
D363V5, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCYL3 MUTATED        1      3      0
  SCYL3 WILD-TYPE     47     50     18
D363V6, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCYL3 MUTATED        1      0      0      2      1
  SCYL3 WILD-TYPE     36     31     17     19     12
D363V7, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCYL3 MUTATED        4      0      0
  SCYL3 WILD-TYPE     67     27     21
D363V8, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCYL3 MUTATED        1      0      1      0      2      0      0
  SCYL3 WILD-TYPE     17      8      9      8     34     25     12
D363V9, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCYL3 MUTATED        1      2      0      1      0      0
  SCYL3 WILD-TYPE     16     30     13     31     16      7
D363V10, multiclass
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(364) Variable = INTS5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS5 MUTATED        1      1      1      0
  INTS5 WILD-TYPE     18     52     29     24
D364V1, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS5 MUTATED        1      1      1      0
  INTS5 WILD-TYPE     34     29     33     26
D364V2, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS5 MUTATED        0      1      0      1      0
  INTS5 WILD-TYPE     29     17     13      8     13
D364V3, multiclass
[1] "Remove cluster labels:" "INTS5 MUTATED"         
clus
  INTS5 MUTATED INTS5 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS5 MUTATED        1      1      0      0      0
  INTS5 WILD-TYPE     31     17     12     10     10
D364V4, multiclass
[1] "Remove cluster labels:" "INTS5 MUTATED"         
clus
  INTS5 MUTATED INTS5 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" "INTS5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS5 MUTATED        0      0      1      2      0
  INTS5 WILD-TYPE     26     20     27     23     20
D364V5, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS5 MUTATED        2      1      0
  INTS5 WILD-TYPE     46     52     18
D364V6, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS5 MUTATED        1      0      1      1      0
  INTS5 WILD-TYPE     36     31     16     20     13
D364V7, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS5 MUTATED        2      1      0
  INTS5 WILD-TYPE     69     26     21
D364V8, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INTS5 MUTATED        1      1      1      0      0      0      0
  INTS5 WILD-TYPE     17      7      9      8     36     25     12
D364V9, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INTS5 MUTATED        0      1      0      2      0      0
  INTS5 WILD-TYPE     17     31     13     30     16      7
D364V10, multiclass
        clus
vv       INTS5 MUTATED INTS5 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(365) Variable = DAAM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAAM1 MUTATED        1      4      1      0
  DAAM1 WILD-TYPE     18     49     29     24
D365V1, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAAM1 MUTATED        3      1      1      1
  DAAM1 WILD-TYPE     32     29     33     25
D365V2, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAAM1 MUTATED        2      0      0      1      1
  DAAM1 WILD-TYPE     27     18     13      8     12
D365V3, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAAM1 MUTATED        3      1      0      0      0
  DAAM1 WILD-TYPE     29     17     12     10     10
D365V4, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAAM1 MUTATED        2      1      1      2      0
  DAAM1 WILD-TYPE     24     19     27     23     20
D365V5, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        2      4      0
  DAAM1 WILD-TYPE     46     49     18
D365V6, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAAM1 MUTATED        3      0      1      1      1
  DAAM1 WILD-TYPE     34     31     16     20     12
D365V7, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAAM1 MUTATED        5      1      0
  DAAM1 WILD-TYPE     66     26     21
D365V8, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DAAM1 MUTATED        0      1      2      0      3      0      0
  DAAM1 WILD-TYPE     18      7      8      8     33     25     12
D365V9, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DAAM1 MUTATED        2      2      0      2      0      0
  DAAM1 WILD-TYPE     15     30     13     30     16      7
D365V10, multiclass
        clus
vv       DAAM1 MUTATED DAAM1 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(366) Variable = RERE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RERE MUTATED        2      2      2      0
  RERE WILD-TYPE     17     51     28     24
D366V1, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RERE MUTATED        2      1      2      1
  RERE WILD-TYPE     33     29     32     25
D366V2, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        0      2      0      1      0
  RERE WILD-TYPE     29     16     13      8     13
D366V3, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            0             29
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        2      1      0      0      0
  RERE WILD-TYPE     30     17     12     10     10
D366V4, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        3      0      0      2      1
  RERE WILD-TYPE     23     20     28     23     19
D366V5, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            3             23
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RERE MUTATED        3      3      0
  RERE WILD-TYPE     45     50     18
D366V6, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            3             45
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        3      1      1      1      0
  RERE WILD-TYPE     34     30     16     20     13
D366V7, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RERE MUTATED        4      2      0
  RERE WILD-TYPE     67     25     21
D366V8, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            4             67
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RERE MUTATED        2      1      1      1      1      0      0
  RERE WILD-TYPE     16      7      9      7     35     25     12
D366V9, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RERE MUTATED        0      2      1      3      0      0
  RERE WILD-TYPE     17     30     12     29     16      7
D366V10, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            1             12
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(367) Variable = CUX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX2 MUTATED        0      3      2      0
  CUX2 WILD-TYPE     19     50     28     24
D367V1, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX2 MUTATED        2      0      2      1
  CUX2 WILD-TYPE     33     30     32     25
D367V2, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUX2 MUTATED        0      2      0      1      1
  CUX2 WILD-TYPE     29     16     13      8     12
D367V3, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUX2 MUTATED        1      2      0      0      1
  CUX2 WILD-TYPE     31     16     12     10      9
D367V4, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            2             16
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUX2 MUTATED        1      0      2      1      1
  CUX2 WILD-TYPE     25     20     26     24     19
D367V5, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX2 MUTATED        3      2      0
  CUX2 WILD-TYPE     45     51     18
D367V6, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUX2 MUTATED        3      1      0      1      0
  CUX2 WILD-TYPE     34     30     17     20     13
D367V7, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX2 MUTATED        5      0      0
  CUX2 WILD-TYPE     66     27     21
D367V8, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUX2 MUTATED        0      0      1      1      2      1      0
  CUX2 WILD-TYPE     18      8      9      7     34     24     12
D367V9, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUX2 MUTATED        0      3      1      1      0      0
  CUX2 WILD-TYPE     17     29     12     31     16      7
D367V10, multiclass
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(368) Variable = RPTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        1      6      4      0
  RPTN WILD-TYPE     18     47     26     24
D368V1, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             18
  CLUS_2            6             47
  CLUS_3            4             26
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        3      4      3      1
  RPTN WILD-TYPE     32     26     31     25
D368V2, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3             32
  CLUS_2            4             26
  CLUS_3            3             31
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        1      0      1      1      1
  RPTN WILD-TYPE     28     18     12      8     12
D368V3, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        2      0      1      0      1
  RPTN WILD-TYPE     30     18     11     10      9
D368V4, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        1      3      2      5      0
  RPTN WILD-TYPE     25     17     26     20     20
D368V5, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             17
  CLUS_3            2             26
  CLUS_4            5             20
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        6      2      3
  RPTN WILD-TYPE     42     51     15
D368V6, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            6             42
  CLUS_2            2             51
  CLUS_3            3             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        4      0      3      1      3
  RPTN WILD-TYPE     33     31     14     20     10
D368V7, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            4             33
  CLUS_2            0             31
  CLUS_3            3             14
  CLUS_4            1             20
  CLUS_5            3             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        5      4      2
  RPTN WILD-TYPE     66     23     19
D368V8, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            5             66
  CLUS_2            4             23
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPTN MUTATED        2      1      1      0      3      2      2
  RPTN WILD-TYPE     16      7      9      8     33     23     10
D368V9, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            2             23
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPTN MUTATED        1      2      0      5      2      1
  RPTN WILD-TYPE     16     30     13     27     14      6
D368V10, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            5             27
  CLUS_5            2             14
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(369) Variable = HIST1H2BJ MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BJ MUTATED        0      2      2      0
  HIST1H2BJ WILD-TYPE     19     51     28     24
D369V1, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 0                  19
  CLUS_2                 2                  51
  CLUS_3                 2                  28
  CLUS_4                 0                  24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BJ MUTATED        2      2      0      0
  HIST1H2BJ WILD-TYPE     33     28     34     26
D369V2, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 2                  33
  CLUS_2                 2                  28
  CLUS_3                 0                  34
  CLUS_4                 0                  26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BJ MUTATED        0      0      1      1      0
  HIST1H2BJ WILD-TYPE     29     18     12      8     13
D369V3, multiclass
[1] "Remove cluster labels:" "HIST1H2BJ MUTATED"     
clus
  HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE 
                  2                  80 
         TCGA-2J-AAB4          TCGA-2J-AAB8          TCGA-2J-AAB9 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2J-AABA          TCGA-2J-AABF          TCGA-2J-AABH 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2J-AABK          TCGA-2J-AABO          TCGA-2J-AABR 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2L-AAQA          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-2L-AAQM          TCGA-3A-A9I5 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-3A-A9IB          TCGA-3A-A9IH          TCGA-3A-A9IU 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-3A-A9IX          TCGA-3A-A9IZ          TCGA-3E-AAAZ 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-F2-A44G          TCGA-F2-A8YN          TCGA-FB-A5VM 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-AAPP          TCGA-FB-AAPQ 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FB-AAPZ          TCGA-FB-AAQ1          TCGA-FB-AAQ6 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FZ-5919          TCGA-FZ-5920          TCGA-FZ-5921 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FZ-5922          TCGA-FZ-5923          TCGA-FZ-5924 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FZ-5926          TCGA-H8-A6C1          TCGA-HZ-7918 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-HZ-7925          TCGA-IB-7652          TCGA-IB-7885 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-A5SO          TCGA-IB-A5SP 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-A5SQ          TCGA-IB-A5SS          TCGA-IB-A5ST 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-A6UF          TCGA-IB-A7LX          TCGA-IB-A7M4 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-AAUM          TCGA-IB-AAUN          TCGA-IB-AAUO 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-AAUP          TCGA-IB-AAUS          TCGA-IB-AAUU 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-AAUV          TCGA-IB-AAUW          TCGA-LB-A7SX 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-LB-A8F3          TCGA-LB-A9Q5          TCGA-OE-A75W 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-Q3-A5QY          TCGA-Q3-AA2A          TCGA-RB-A7B8 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-S4-A8RO          TCGA-US-A776          TCGA-US-A779 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-US-A77E          TCGA-US-A77G          TCGA-US-A77J 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-XD-AAUH          TCGA-XD-AAUI          TCGA-XD-AAUL 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-XN-A8T5          TCGA-YB-A89D          TCGA-YH-A8SY 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-YY-A8LH          TCGA-Z5-AAPL 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BJ MUTATED        1      0      0      0      1
  HIST1H2BJ WILD-TYPE     31     18     12     10      9
D369V4, multiclass
[1] "Remove cluster labels:" "HIST1H2BJ MUTATED"     
clus
  HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE 
                  2                  80 
         TCGA-2J-AAB4          TCGA-2J-AAB8          TCGA-2J-AAB9 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2J-AABA          TCGA-2J-AABF          TCGA-2J-AABH 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2J-AABK          TCGA-2J-AABO          TCGA-2J-AABR 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2L-AAQA          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-2L-AAQM          TCGA-3A-A9I5 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-3A-A9IB          TCGA-3A-A9IH          TCGA-3A-A9IU 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-3A-A9IX          TCGA-3A-A9IZ          TCGA-3E-AAAZ 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-F2-A44G          TCGA-F2-A8YN          TCGA-FB-A5VM 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-AAPP          TCGA-FB-AAPQ 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FB-AAPZ          TCGA-FB-AAQ1          TCGA-FB-AAQ6 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FZ-5919          TCGA-FZ-5920          TCGA-FZ-5921 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FZ-5922          TCGA-FZ-5923          TCGA-FZ-5924 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-FZ-5926          TCGA-H8-A6C1          TCGA-HZ-7918 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-HZ-7925          TCGA-IB-7652          TCGA-IB-7885 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-A5SO          TCGA-IB-A5SP 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-A5SQ          TCGA-IB-A5SS          TCGA-IB-A5ST 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-A6UF          TCGA-IB-A7LX          TCGA-IB-A7M4 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-AAUM          TCGA-IB-AAUN          TCGA-IB-AAUO 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-AAUP          TCGA-IB-AAUS          TCGA-IB-AAUU 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-IB-AAUV          TCGA-IB-AAUW          TCGA-LB-A7SX 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-LB-A8F3          TCGA-LB-A9Q5          TCGA-OE-A75W 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-Q3-A5QY          TCGA-Q3-AA2A          TCGA-RB-A7B8 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-S4-A8RO          TCGA-US-A776          TCGA-US-A779 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-US-A77E          TCGA-US-A77G          TCGA-US-A77J 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-XD-AAUH          TCGA-XD-AAUI          TCGA-XD-AAUL 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-XN-A8T5          TCGA-YB-A89D          TCGA-YH-A8SY 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
         TCGA-YY-A8LH          TCGA-Z5-AAPL 
"HIST1H2BJ WILD-TYPE" "HIST1H2BJ WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BJ MUTATED        0      2      1      1      0
  HIST1H2BJ WILD-TYPE     26     18     27     24     20
D369V5, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 2                  18
  CLUS_3                 1                  27
  CLUS_4                 1                  24
  CLUS_5                 0                  20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BJ MUTATED        1      1      2
  HIST1H2BJ WILD-TYPE     47     52     16
D369V6, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 1                  47
  CLUS_2                 1                  52
  CLUS_3                 2                  16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BJ MUTATED        0      0      0      2      2
  HIST1H2BJ WILD-TYPE     37     31     17     19     11
D369V7, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 0                  37
  CLUS_2                 0                  31
  CLUS_3                 0                  17
  CLUS_4                 2                  19
  CLUS_5                 2                  11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BJ MUTATED        1      0      3
  HIST1H2BJ WILD-TYPE     70     27     18
D369V8, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 1                  70
  CLUS_2                 0                  27
  CLUS_3                 3                  18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H2BJ MUTATED        0      0      1      0      0      1      2
  HIST1H2BJ WILD-TYPE     18      8      9      8     36     24     10
D369V9, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 0                  18
  CLUS_2                 0                   8
  CLUS_3                 1                   9
  CLUS_4                 0                   8
  CLUS_5                 0                  36
  CLUS_6                 1                  24
  CLUS_7                 2                  10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H2BJ MUTATED        0      0      0      2      1      1
  HIST1H2BJ WILD-TYPE     17     32     13     30     15      6
D369V10, multiclass
        clus
vv       HIST1H2BJ MUTATED HIST1H2BJ WILD-TYPE
  CLUS_1                 0                  17
  CLUS_2                 0                  32
  CLUS_3                 0                  13
  CLUS_4                 2                  30
  CLUS_5                 1                  15
  CLUS_6                 1                   6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(370) Variable = SLCO2A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO2A1 MUTATED        0      3      1      0
  SLCO2A1 WILD-TYPE     19     50     29     24
D370V1, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO2A1 MUTATED        1      1      2      0
  SLCO2A1 WILD-TYPE     34     29     32     26
D370V2, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                29
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO2A1 MUTATED        0      0      0      1      0
  SLCO2A1 WILD-TYPE     29     18     13      8     13
D370V3, multiclass
[1] "Remove cluster labels:" "SLCO2A1 MUTATED"       
clus
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-Z5-AAPL 
"SLCO2A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO2A1 MUTATED        1      0      0      0      0
  SLCO2A1 WILD-TYPE     31     18     12     10     10
D370V4, multiclass
[1] "Remove cluster labels:" "SLCO2A1 MUTATED"       
clus
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-Z5-AAPL 
"SLCO2A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO2A1 MUTATED        1      0      1      2      0
  SLCO2A1 WILD-TYPE     25     20     27     23     20
D370V5, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO2A1 MUTATED        2      2      0
  SLCO2A1 WILD-TYPE     46     51     18
D370V6, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLCO2A1 MUTATED        1      0      1      2      0
  SLCO2A1 WILD-TYPE     36     31     16     19     13
D370V7, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO2A1 MUTATED        3      1      0
  SLCO2A1 WILD-TYPE     68     26     21
D370V8, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLCO2A1 MUTATED        1      1      2      0      0      0      0
  SLCO2A1 WILD-TYPE     17      7      8      8     36     25     12
D370V9, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               2                 8
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLCO2A1 MUTATED        1      1      0      2      0      0
  SLCO2A1 WILD-TYPE     16     31     13     30     16      7
D370V10, multiclass
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(371) Variable = TULP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TULP1 MUTATED        0      1      2      0
  TULP1 WILD-TYPE     19     52     28     24
D371V1, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TULP1 MUTATED        0      1      1      1
  TULP1 WILD-TYPE     35     29     33     25
D371V2, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TULP1 MUTATED        0      0      1      1      0
  TULP1 WILD-TYPE     29     18     12      8     13
D371V3, multiclass
[1] "Remove cluster labels:" "TULP1 MUTATED"         
clus
  TULP1 MUTATED TULP1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUS      TCGA-IB-AAUU 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TULP1 MUTATED        0      0      0      1      1
  TULP1 WILD-TYPE     32     18     12      9      9
D371V4, multiclass
[1] "Remove cluster labels:" "TULP1 MUTATED"         
clus
  TULP1 MUTATED TULP1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUS      TCGA-IB-AAUU 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TULP1 MUTATED        0      0      1      1      1
  TULP1 WILD-TYPE     26     20     27     24     19
D371V5, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        1      2      0
  TULP1 WILD-TYPE     47     51     18
D371V6, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TULP1 MUTATED        1      1      1      0      0
  TULP1 WILD-TYPE     36     30     16     21     13
D371V7, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        2      1      0
  TULP1 WILD-TYPE     69     26     21
D371V8, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TULP1 MUTATED        1      1      0      0      0      1      0
  TULP1 WILD-TYPE     17      7     10      8     36     24     12
D371V9, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TULP1 MUTATED        1      0      0      1      1      0
  TULP1 WILD-TYPE     16     32     13     31     15      7
D371V10, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(372) Variable = C14ORF21 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF21 MUTATED        1      4      1      0
  C14ORF21 WILD-TYPE     18     49     29     24
D372V1, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                4                 49
  CLUS_3                1                 29
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF21 MUTATED        3      1      2      0
  C14ORF21 WILD-TYPE     32     29     32     26
D372V2, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                1                 29
  CLUS_3                2                 32
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF21 MUTATED        1      0      0      2      0
  C14ORF21 WILD-TYPE     28     18     13      7     13
D372V3, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                0                 18
  CLUS_3                0                 13
  CLUS_4                2                  7
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF21 MUTATED        2      0      0      1      0
  C14ORF21 WILD-TYPE     30     18     12      9     10
D372V4, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                0                 18
  CLUS_3                0                 12
  CLUS_4                1                  9
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF21 MUTATED        1      1      2      2      0
  C14ORF21 WILD-TYPE     25     19     26     23     20
D372V5, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                2                 26
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF21 MUTATED        2      3      1
  C14ORF21 WILD-TYPE     46     50     17
D372V6, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                3                 50
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF21 MUTATED        1      2      1      2      0
  C14ORF21 WILD-TYPE     36     29     16     19     13
D372V7, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                2                 29
  CLUS_3                1                 16
  CLUS_4                2                 19
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF21 MUTATED        5      0      1
  C14ORF21 WILD-TYPE     66     27     20
D372V8, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                5                 66
  CLUS_2                0                 27
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF21 MUTATED        0      1      1      0      3      1      0
  C14ORF21 WILD-TYPE     18      7      9      8     33     24     12
D372V9, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                3                 33
  CLUS_6                1                 24
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF21 MUTATED        0      3      0      2      0      1
  C14ORF21 WILD-TYPE     17     29     13     30     16      6
D372V10, multiclass
        clus
vv       C14ORF21 MUTATED C14ORF21 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                3                 29
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(373) Variable = PPIG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        1      0      2      1
  PPIG WILD-TYPE     18     53     28     23
D373V1, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             18
  CLUS_2            0             53
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        1      2      1      0
  PPIG WILD-TYPE     34     28     33     26
D373V2, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             34
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        1      0      1      1      0
  PPIG WILD-TYPE     28     18     12      8     13
D373V3, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        2      0      1      0      0
  PPIG WILD-TYPE     30     18     11     10     10
D373V4, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        0      1      0      2      0
  PPIG WILD-TYPE     26     19     28     23     20
D373V5, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED        2      1      0
  PPIG WILD-TYPE     46     52     18
D373V6, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        1      0      1      1      0
  PPIG WILD-TYPE     36     31     16     20     13
D373V7, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED        2      1      0
  PPIG WILD-TYPE     69     26     21
D373V8, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPIG MUTATED        0      0      2      0      0      1      0
  PPIG WILD-TYPE     18      8      8      8     36     24     12
D373V9, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPIG MUTATED        0      1      0      2      0      0
  PPIG WILD-TYPE     17     31     13     30     16      7
D373V10, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(374) Variable = SLC39A4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A4 MUTATED        0      3      1      0
  SLC39A4 WILD-TYPE     19     50     29     24
D374V1, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A4 MUTATED        2      0      2      0
  SLC39A4 WILD-TYPE     33     30     32     26
D374V2, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A4 MUTATED        1      1      0      2      0
  SLC39A4 WILD-TYPE     28     17     13      7     13
D374V3, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A4 MUTATED        1      1      0      2      0
  SLC39A4 WILD-TYPE     31     17     12      8     10
D374V4, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               2                 8
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A4 MUTATED        2      0      1      1      0
  SLC39A4 WILD-TYPE     24     20     27     24     20
D374V5, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A4 MUTATED        2      2      0
  SLC39A4 WILD-TYPE     46     51     18
D374V6, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A4 MUTATED        0      1      0      3      0
  SLC39A4 WILD-TYPE     37     30     17     18     13
D374V7, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A4 MUTATED        3      1      0
  SLC39A4 WILD-TYPE     68     26     21
D374V8, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC39A4 MUTATED        1      0      1      0      1      1      0
  SLC39A4 WILD-TYPE     17      8      9      8     35     24     12
D374V9, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC39A4 MUTATED        0      1      1      2      0      0
  SLC39A4 WILD-TYPE     17     31     12     30     16      7
D374V10, multiclass
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(375) Variable = CBLL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        0      1      3      0
  CBLL1 WILD-TYPE     19     52     27     24
D375V1, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        2      1      0      1
  CBLL1 WILD-TYPE     33     29     34     25
D375V2, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        1      0      1      1      0
  CBLL1 WILD-TYPE     28     18     12      8     13
D375V3, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        2      0      1      0      0
  CBLL1 WILD-TYPE     30     18     11     10     10
D375V4, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        1      1      0      1      1
  CBLL1 WILD-TYPE     25     19     28     24     19
D375V5, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        1      1      2
  CBLL1 WILD-TYPE     47     52     16
D375V6, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        1      1      0      2      0
  CBLL1 WILD-TYPE     36     30     17     19     13
D375V7, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        2      0      2
  CBLL1 WILD-TYPE     69     27     19
D375V8, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CBLL1 MUTATED        0      0      1      0      1      1      1
  CBLL1 WILD-TYPE     18      8      9      8     35     24     11
D375V9, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBLL1 MUTATED        0      1      0      1      1      1
  CBLL1 WILD-TYPE     17     31     13     31     15      6
D375V10, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(376) Variable = FCGBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCGBP MUTATED        2      3      6      1
  FCGBP WILD-TYPE     17     50     24     23
D376V1, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             2              17
  CLUS_2             3              50
  CLUS_3             6              24
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCGBP MUTATED        5      2      2      3
  FCGBP WILD-TYPE     30     28     32     23
D376V2, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             5              30
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCGBP MUTATED        5      0      1      2      1
  FCGBP WILD-TYPE     24     18     12      7     12
D376V3, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             5              24
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCGBP MUTATED        7      0      1      1      0
  FCGBP WILD-TYPE     25     18     11      9     10
D376V4, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             7              25
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCGBP MUTATED        1      4      2      4      1
  FCGBP WILD-TYPE     25     16     26     21     19
D376V5, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              16
  CLUS_3             2              26
  CLUS_4             4              21
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        5      4      3
  FCGBP WILD-TYPE     43     49     15
D376V6, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             5              43
  CLUS_2             4              49
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCGBP MUTATED        2      1      2      3      4
  FCGBP WILD-TYPE     35     30     15     18      9
D376V7, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             3              18
  CLUS_5             4               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCGBP MUTATED        7      2      3
  FCGBP WILD-TYPE     64     25     18
D376V8, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             7              64
  CLUS_2             2              25
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FCGBP MUTATED        2      2      1      0      1      1      4
  FCGBP WILD-TYPE     16      6      9      8     35     24      8
D376V9, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             4               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FCGBP MUTATED        2      2      0      4      3      0
  FCGBP WILD-TYPE     15     30     13     28     13      7
D376V10, multiclass
        clus
vv       FCGBP MUTATED FCGBP WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             4              28
  CLUS_5             3              13
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(377) Variable = MAMSTR MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAMSTR MUTATED        0      1      1      1
  MAMSTR WILD-TYPE     19     52     29     23
D377V1, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAMSTR MUTATED        1      0      1      1
  MAMSTR WILD-TYPE     34     30     33     25
D377V2, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMSTR MUTATED        1      0      0      1      1
  MAMSTR WILD-TYPE     28     18     13      8     12
D377V3, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMSTR MUTATED        1      0      0      1      1
  MAMSTR WILD-TYPE     31     18     12      9      9
D377V4, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               31
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMSTR MUTATED        1      1      0      0      1
  MAMSTR WILD-TYPE     25     19     28     25     19
D377V5, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              0               25
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAMSTR MUTATED        1      1      1
  MAMSTR WILD-TYPE     47     52     17
D377V6, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               47
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMSTR MUTATED        1      1      0      1      0
  MAMSTR WILD-TYPE     36     30     17     20     13
D377V7, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAMSTR MUTATED        1      1      1
  MAMSTR WILD-TYPE     70     26     20
D377V8, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAMSTR MUTATED        1      0      0      0      0      2      0
  MAMSTR WILD-TYPE     17      8     10      8     36     23     12
D377V9, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAMSTR MUTATED        0      1      0      1      1      0
  MAMSTR WILD-TYPE     17     31     13     31     15      7
D377V10, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(378) Variable = OR2T33 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED        1      1      2      0
  OR2T33 WILD-TYPE     18     52     28     24
D378V1, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED        3      0      1      0
  OR2T33 WILD-TYPE     32     30     33     26
D378V2, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2T33 MUTATED        0      0      0      1      1
  OR2T33 WILD-TYPE     29     18     13      8     12
D378V3, multiclass
[1] "Remove cluster labels:" "OR2T33 MUTATED"        
clus
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T5 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2T33 MUTATED        1      0      1      0      0
  OR2T33 WILD-TYPE     31     18     11     10     10
D378V4, multiclass
[1] "Remove cluster labels:" "OR2T33 MUTATED"        
clus
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XN-A8T5 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2T33 MUTATED        1      0      1      2      0
  OR2T33 WILD-TYPE     25     20     27     23     20
D378V5, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T33 MUTATED        3      1      0
  OR2T33 WILD-TYPE     45     52     18
D378V6, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2T33 MUTATED        2      0      0      2      0
  OR2T33 WILD-TYPE     35     31     17     19     13
D378V7, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T33 MUTATED        4      0      0
  OR2T33 WILD-TYPE     67     27     21
D378V8, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2T33 MUTATED        0      0      1      0      1      1      0
  OR2T33 WILD-TYPE     18      8      9      8     35     24     12
D378V9, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR2T33 MUTATED        0      1      0      2      0      0
  OR2T33 WILD-TYPE     17     31     13     30     16      7
D378V10, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(379) Variable = KCNB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNB1 MUTATED        2      1      1      1
  KCNB1 WILD-TYPE     17     52     29     23
D379V1, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNB1 MUTATED        3      1      0      1
  KCNB1 WILD-TYPE     32     29     34     25
D379V2, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNB1 MUTATED        1      1      0      1      0
  KCNB1 WILD-TYPE     28     17     13      8     13
D379V3, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNB1 MUTATED        2      1      0      0      0
  KCNB1 WILD-TYPE     30     17     12     10     10
D379V4, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNB1 MUTATED        0      1      0      3      1
  KCNB1 WILD-TYPE     26     19     28     22     19
D379V5, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNB1 MUTATED        3      1      1
  KCNB1 WILD-TYPE     45     52     17
D379V6, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNB1 MUTATED        0      1      2      1      1
  KCNB1 WILD-TYPE     37     30     15     20     12
D379V7, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNB1 MUTATED        2      2      1
  KCNB1 WILD-TYPE     69     25     20
D379V8, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNB1 MUTATED        2      0      1      1      0      1      0
  KCNB1 WILD-TYPE     16      8      9      7     36     24     12
D379V9, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNB1 MUTATED        0      0      1      3      1      0
  KCNB1 WILD-TYPE     17     32     12     29     15      7
D379V10, multiclass
        clus
vv       KCNB1 MUTATED KCNB1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(380) Variable = RREB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        1      3      4      2
  RREB1 WILD-TYPE     18     50     26     22
D380V1, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             4              26
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        3      1      3      3
  RREB1 WILD-TYPE     32     29     31     23
D380V2, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        4      0      1      1      1
  RREB1 WILD-TYPE     25     18     12      8     12
D380V3, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        5      1      1      0      0
  RREB1 WILD-TYPE     27     17     11     10     10
D380V4, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        3      1      1      3      2
  RREB1 WILD-TYPE     23     19     27     22     18
D380V5, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        5      4      1
  RREB1 WILD-TYPE     43     49     17
D380V6, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        3      4      2      1      0
  RREB1 WILD-TYPE     34     27     15     20     13
D380V7, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             4              27
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        6      3      1
  RREB1 WILD-TYPE     65     24     20
D380V8, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RREB1 MUTATED        0      1      2      0      4      3      0
  RREB1 WILD-TYPE     18      7      8      8     32     22     12
D380V9, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             4              32
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RREB1 MUTATED        3      2      0      3      2      0
  RREB1 WILD-TYPE     14     30     13     29     14      7
D380V10, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(381) Variable = CANT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CANT1 MUTATED        1      1      1      0
  CANT1 WILD-TYPE     18     52     29     24
D381V1, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CANT1 MUTATED        0      1      2      0
  CANT1 WILD-TYPE     35     29     32     26
D381V2, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CANT1 MUTATED        0      0      1      0      1
  CANT1 WILD-TYPE     29     18     12      9     12
D381V3, multiclass
[1] "Remove cluster labels:" "CANT1 MUTATED"         
clus
  CANT1 MUTATED CANT1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-S4-A8RO 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XN-A8T5 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CANT1 MUTATED        0      0      1      0      1
  CANT1 WILD-TYPE     32     18     11     10      9
D381V4, multiclass
[1] "Remove cluster labels:" "CANT1 MUTATED"         
clus
  CANT1 MUTATED CANT1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-S4-A8RO 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XN-A8T5 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" "CANT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CANT1 MUTATED        1      1      1      0      0
  CANT1 WILD-TYPE     25     19     27     25     20
D381V5, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CANT1 MUTATED        1      1      1
  CANT1 WILD-TYPE     47     52     17
D381V6, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CANT1 MUTATED        2      0      0      0      1
  CANT1 WILD-TYPE     35     31     17     21     12
D381V7, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CANT1 MUTATED        2      0      1
  CANT1 WILD-TYPE     69     27     20
D381V8, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CANT1 MUTATED        0      0      0      0      2      1      0
  CANT1 WILD-TYPE     18      8     10      8     34     24     12
D381V9, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CANT1 MUTATED        0      2      0      0      1      0
  CANT1 WILD-TYPE     17     30     13     32     15      7
D381V10, multiclass
        clus
vv       CANT1 MUTATED CANT1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(382) Variable = SMARCA2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA2 MUTATED        1      1      2      0
  SMARCA2 WILD-TYPE     18     52     28     24
D382V1, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA2 MUTATED        3      1      0      0
  SMARCA2 WILD-TYPE     32     29     34     26
D382V2, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA2 MUTATED        2      0      0      1      0
  SMARCA2 WILD-TYPE     27     18     13      8     13
D382V3, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA2 MUTATED        3      0      0      0      0
  SMARCA2 WILD-TYPE     29     18     12     10     10
D382V4, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA2 MUTATED        0      1      1      2      0
  SMARCA2 WILD-TYPE     26     19     27     23     20
D382V5, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA2 MUTATED        2      1      1
  SMARCA2 WILD-TYPE     46     52     17
D382V6, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA2 MUTATED        0      1      1      1      1
  SMARCA2 WILD-TYPE     37     30     16     20     12
D382V7, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA2 MUTATED        1      1      2
  SMARCA2 WILD-TYPE     70     26     19
D382V8, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               1                26
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA2 MUTATED        0      0      1      0      0      3      0
  SMARCA2 WILD-TYPE     18      8      9      8     36     22     12
D382V9, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               3                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCA2 MUTATED        0      0      0      2      2      0
  SMARCA2 WILD-TYPE     17     32     13     30     14      7
D382V10, multiclass
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               2                14
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(383) Variable = GIGYF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        0      1      1      2
  GIGYF2 WILD-TYPE     19     52     29     22
D383V1, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        2      1      0      1
  GIGYF2 WILD-TYPE     33     29     34     25
D383V2, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF2 MUTATED        2      1      0      0      0
  GIGYF2 WILD-TYPE     27     17     13      9     13
D383V3, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF2 MUTATED        2      1      0      0      0
  GIGYF2 WILD-TYPE     30     17     12     10     10
D383V4, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF2 MUTATED        1      1      0      0      2
  GIGYF2 WILD-TYPE     25     19     28     25     18
D383V5, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              0               25
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED        0      3      1
  GIGYF2 WILD-TYPE     48     50     17
D383V6, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              0               48
  CLUS_2              3               50
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF2 MUTATED        1      2      0      1      0
  GIGYF2 WILD-TYPE     36     29     17     20     13
D383V7, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED        3      0      1
  GIGYF2 WILD-TYPE     68     27     20
D383V8, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GIGYF2 MUTATED        0      0      0      1      1      1      1
  GIGYF2 WILD-TYPE     18      8     10      7     35     24     11
D383V9, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIGYF2 MUTATED        0      1      2      0      0      1
  GIGYF2 WILD-TYPE     17     31     11     32     16      6
D383V10, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              2               11
  CLUS_4              0               32
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(384) Variable = PPP2R5C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5C MUTATED        0      2      1      2
  PPP2R5C WILD-TYPE     19     51     29     22
D384V1, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5C MUTATED        3      1      1      0
  PPP2R5C WILD-TYPE     32     29     33     26
D384V2, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP2R5C MUTATED        1      1      0      3      0
  PPP2R5C WILD-TYPE     28     17     13      6     13
D384V3, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               3                 6
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP2R5C MUTATED        3      1      0      1      0
  PPP2R5C WILD-TYPE     29     17     12      9     10
D384V4, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP2R5C MUTATED        0      1      2      2      0
  PPP2R5C WILD-TYPE     26     19     26     23     20
D384V5, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               2                26
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R5C MUTATED        3      2      0
  PPP2R5C WILD-TYPE     45     51     18
D384V6, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               3                45
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP2R5C MUTATED        1      1      1      1      1
  PPP2R5C WILD-TYPE     36     30     16     20     12
D384V7, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R5C MUTATED        4      1      0
  PPP2R5C WILD-TYPE     67     26     21
D384V8, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP2R5C MUTATED        1      0      1      0      2      1      0
  PPP2R5C WILD-TYPE     17      8      9      8     34     24     12
D384V9, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP2R5C MUTATED        0      2      0      3      0      0
  PPP2R5C WILD-TYPE     17     30     13     29     16      7
D384V10, multiclass
        clus
vv       PPP2R5C MUTATED PPP2R5C WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(385) Variable = COPA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPA MUTATED        1      1      2      1
  COPA WILD-TYPE     18     52     28     23
D385V1, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            1             18
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPA MUTATED        2      1      2      0
  COPA WILD-TYPE     33     29     32     26
D385V2, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COPA MUTATED        2      1      0      2      0
  COPA WILD-TYPE     27     17     13      7     13
D385V3, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            2             27
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COPA MUTATED        3      1      0      1      0
  COPA WILD-TYPE     29     17     12      9     10
D385V4, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COPA MUTATED        0      0      2      3      0
  COPA WILD-TYPE     26     20     26     22     20
D385V5, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            3             22
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COPA MUTATED        3      2      0
  COPA WILD-TYPE     45     51     18
D385V6, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            3             45
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COPA MUTATED        2      0      1      2      0
  COPA WILD-TYPE     35     31     16     19     13
D385V7, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COPA MUTATED        4      1      0
  COPA WILD-TYPE     67     26     21
D385V8, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COPA MUTATED        1      0      1      0      3      0      0
  COPA WILD-TYPE     17      8      9      8     33     25     12
D385V9, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COPA MUTATED        0      2      0      3      0      0
  COPA WILD-TYPE     17     30     13     29     16      7
D385V10, multiclass
        clus
vv       COPA MUTATED COPA WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(386) Variable = RCOR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        1      3      1      0
  RCOR1 WILD-TYPE     18     50     29     24
D386V1, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        1      1      3      0
  RCOR1 WILD-TYPE     34     29     31     26
D386V2, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR1 MUTATED        0      1      0      1      2
  RCOR1 WILD-TYPE     29     17     13      8     11
D386V3, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR1 MUTATED        1      1      1      0      1
  RCOR1 WILD-TYPE     31     17     11     10      9
D386V4, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR1 MUTATED        1      0      2      2      0
  RCOR1 WILD-TYPE     25     20     26     23     20
D386V5, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR1 MUTATED        5      0      0
  RCOR1 WILD-TYPE     43     53     18
D386V6, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             0              53
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR1 MUTATED        2      0      1      2      0
  RCOR1 WILD-TYPE     35     31     16     19     13
D386V7, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR1 MUTATED        3      2      0
  RCOR1 WILD-TYPE     68     25     21
D386V8, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RCOR1 MUTATED        2      0      1      0      2      0      0
  RCOR1 WILD-TYPE     16      8      9      8     34     25     12
D386V9, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RCOR1 MUTATED        0      2      0      3      0      0
  RCOR1 WILD-TYPE     17     30     13     29     16      7
D386V10, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(387) Variable = PTCD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCD1 MUTATED        0      3      0      0
  PTCD1 WILD-TYPE     19     50     30     24
D387V1, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCD1 MUTATED        1      0      2      0
  PTCD1 WILD-TYPE     34     30     32     26
D387V2, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCD1 MUTATED        0      1      0      0      0
  PTCD1 WILD-TYPE     29     17     13      9     13
D387V3, multiclass
[1] "Remove cluster labels:" "PTCD1 MUTATED"         
clus
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-AAUM 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PTCD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCD1 MUTATED        0      1      0      0      0
  PTCD1 WILD-TYPE     32     17     12     10     10
D387V4, multiclass
[1] "Remove cluster labels:" "PTCD1 MUTATED"         
clus
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-AAUM 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PTCD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCD1 MUTATED        1      0      2      0      0
  PTCD1 WILD-TYPE     25     20     26     25     20
D387V5, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             0              25
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCD1 MUTATED        0      3      0
  PTCD1 WILD-TYPE     48     50     18
D387V6, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCD1 MUTATED        1      1      0      0      1
  PTCD1 WILD-TYPE     36     30     17     21     12
D387V7, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCD1 MUTATED        2      0      1
  PTCD1 WILD-TYPE     69     27     20
D387V8, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTCD1 MUTATED        0      0      0      0      1      1      1
  PTCD1 WILD-TYPE     18      8     10      8     35     24     11
D387V9, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTCD1 MUTATED        1      1      0      1      0      0
  PTCD1 WILD-TYPE     16     31     13     31     16      7
D387V10, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(388) Variable = SOS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOS1 MUTATED        0      2      3      0
  SOS1 WILD-TYPE     19     51     27     24
D388V1, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            3             27
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOS1 MUTATED        3      1      1      0
  SOS1 WILD-TYPE     32     29     33     26
D388V2, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS1 MUTATED        2      0      2      1      0
  SOS1 WILD-TYPE     27     18     11      8     13
D388V3, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS1 MUTATED        3      0      1      0      1
  SOS1 WILD-TYPE     29     18     11     10      9
D388V4, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS1 MUTATED        0      1      2      1      0
  SOS1 WILD-TYPE     26     19     26     24     20
D388V5, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            2             26
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOS1 MUTATED        2      0      2
  SOS1 WILD-TYPE     46     53     16
D388V6, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            0             53
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS1 MUTATED        0      2      0      1      1
  SOS1 WILD-TYPE     37     29     17     20     12
D388V7, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOS1 MUTATED        2      0      2
  SOS1 WILD-TYPE     69     27     19
D388V8, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            0             27
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SOS1 MUTATED        0      0      1      0      0      3      0
  SOS1 WILD-TYPE     18      8      9      8     36     22     12
D388V9, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            3             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOS1 MUTATED        0      1      0      1      2      0
  SOS1 WILD-TYPE     17     31     13     31     14      7
D388V10, multiclass
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(389) Variable = IPO4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO4 MUTATED        0      2      1      0
  IPO4 WILD-TYPE     19     51     29     24
D389V1, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO4 MUTATED        2      1      0      0
  IPO4 WILD-TYPE     33     29     34     26
D389V2, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO4 MUTATED        0      1      0      1      0
  IPO4 WILD-TYPE     29     17     13      8     13
D389V3, multiclass
[1] "Remove cluster labels:" "IPO4 MUTATED"          
clus
  IPO4 MUTATED IPO4 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQL 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO4 MUTATED        1      1      0      0      0
  IPO4 WILD-TYPE     31     17     12     10     10
D389V4, multiclass
[1] "Remove cluster labels:" "IPO4 MUTATED"          
clus
  IPO4 MUTATED IPO4 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQL 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" "IPO4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO4 MUTATED        1      0      0      2      0
  IPO4 WILD-TYPE     25     20     28     23     20
D389V5, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPO4 MUTATED        2      1      0
  IPO4 WILD-TYPE     46     52     18
D389V6, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO4 MUTATED        1      0      1      1      0
  IPO4 WILD-TYPE     36     31     16     20     13
D389V7, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPO4 MUTATED        2      1      0
  IPO4 WILD-TYPE     69     26     21
D389V8, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IPO4 MUTATED        0      0      1      0      1      1      0
  IPO4 WILD-TYPE     18      8      9      8     35     24     12
D389V9, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IPO4 MUTATED        0      1      0      2      0      0
  IPO4 WILD-TYPE     17     31     13     30     16      7
D389V10, multiclass
        clus
vv       IPO4 MUTATED IPO4 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(390) Variable = KCNA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA4 MUTATED        0      6      2      2
  KCNA4 WILD-TYPE     19     47     28     22
D390V1, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             6              47
  CLUS_3             2              28
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA4 MUTATED        3      3      2      2
  KCNA4 WILD-TYPE     32     27     32     24
D390V2, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              27
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNA4 MUTATED        2      0      2      1      1
  KCNA4 WILD-TYPE     27     18     11      8     12
D390V3, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNA4 MUTATED        4      0      1      0      1
  KCNA4 WILD-TYPE     28     18     11     10      9
D390V4, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNA4 MUTATED        2      2      2      3      1
  KCNA4 WILD-TYPE     24     18     26     22     19
D390V5, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA4 MUTATED        5      3      2
  KCNA4 WILD-TYPE     43     50     16
D390V6, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             5              43
  CLUS_2             3              50
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNA4 MUTATED        2      2      2      2      2
  KCNA4 WILD-TYPE     35     29     15     19     11
D390V7, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA4 MUTATED        6      3      1
  KCNA4 WILD-TYPE     65     24     20
D390V8, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNA4 MUTATED        2      1      2      0      3      0      2
  KCNA4 WILD-TYPE     16      7      8      8     33     25     10
D390V9, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNA4 MUTATED        1      2      2      4      0      1
  KCNA4 WILD-TYPE     16     30     11     28     16      6
D390V10, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             4              28
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(391) Variable = ZNF644 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED        0      3      1      1
  ZNF644 WILD-TYPE     19     50     29     23
D391V1, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED        3      0      1      1
  ZNF644 WILD-TYPE     32     30     33     25
D391V2, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF644 MUTATED        2      0      0      1      0
  ZNF644 WILD-TYPE     27     18     13      8     13
D391V3, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF644 MUTATED        3      0      0      0      0
  ZNF644 WILD-TYPE     29     18     12     10     10
D391V4, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF644 MUTATED        2      0      1      1      1
  ZNF644 WILD-TYPE     24     20     27     24     19
D391V5, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF644 MUTATED        2      2      1
  ZNF644 WILD-TYPE     46     51     17
D391V6, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF644 MUTATED        3      0      0      1      1
  ZNF644 WILD-TYPE     34     31     17     20     12
D391V7, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF644 MUTATED        4      0      1
  ZNF644 WILD-TYPE     67     27     20
D391V8, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF644 MUTATED        0      0      1      1      3      0      0
  ZNF644 WILD-TYPE     18      8      9      7     33     25     12
D391V9, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              3               33
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF644 MUTATED        1      2      0      1      1      0
  ZNF644 WILD-TYPE     16     30     13     31     15      7
D391V10, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(392) Variable = TEP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEP1 MUTATED        0      4      3      2
  TEP1 WILD-TYPE     19     49     27     22
D392V1, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            4             49
  CLUS_3            3             27
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEP1 MUTATED        4      3      1      1
  TEP1 WILD-TYPE     31     27     33     25
D392V2, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            3             27
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEP1 MUTATED        2      0      2      2      1
  TEP1 WILD-TYPE     27     18     11      7     12
D392V3, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            2              7
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEP1 MUTATED        4      0      0      1      2
  TEP1 WILD-TYPE     28     18     12      9      8
D392V4, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEP1 MUTATED        1      2      1      4      1
  TEP1 WILD-TYPE     25     18     27     21     19
D392V5, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             18
  CLUS_3            1             27
  CLUS_4            4             21
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEP1 MUTATED        5      2      2
  TEP1 WILD-TYPE     43     51     16
D392V6, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            5             43
  CLUS_2            2             51
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEP1 MUTATED        2      1      3      2      1
  TEP1 WILD-TYPE     35     30     14     19     12
D392V7, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             30
  CLUS_3            3             14
  CLUS_4            2             19
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEP1 MUTATED        4      2      3
  TEP1 WILD-TYPE     67     25     18
D392V8, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            2             25
  CLUS_3            3             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TEP1 MUTATED        1      0      1      0      4      2      1
  TEP1 WILD-TYPE     17      8      9      8     32     23     11
D392V9, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            4             32
  CLUS_6            2             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TEP1 MUTATED        0      2      0      4      2      1
  TEP1 WILD-TYPE     17     30     13     28     14      6
D392V10, multiclass
        clus
vv       TEP1 MUTATED TEP1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            4             28
  CLUS_5            2             14
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(393) Variable = TMEM184A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      1      1      2
  TMEM184A WILD-TYPE     19     52     29     22
D393V1, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                1                 52
  CLUS_3                1                 29
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        2      1      1      0
  TMEM184A WILD-TYPE     33     29     33     26
D393V2, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                1                 29
  CLUS_3                1                 33
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        1      0      0      1      0
  TMEM184A WILD-TYPE     28     18     13      8     13
D393V3, multiclass
[1] "Remove cluster labels:" "TMEM184A MUTATED"      
clus
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        2      0      0      0      0
  TMEM184A WILD-TYPE     30     18     12     10     10
D393V4, multiclass
[1] "Remove cluster labels:" "TMEM184A MUTATED"      
clus
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        1      0      1      2      0
  TMEM184A WILD-TYPE     25     20     27     23     20
D393V5, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        3      1      0
  TMEM184A WILD-TYPE     45     52     18
D393V6, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                1                 52
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        2      0      1      1      0
  TMEM184A WILD-TYPE     35     31     16     20     13
D393V7, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                0                 31
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        3      1      0
  TMEM184A WILD-TYPE     68     26     21
D393V8, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM184A MUTATED        0      0      1      0      3      0      0
  TMEM184A WILD-TYPE     18      8      9      8     33     25     12
D393V9, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                3                 33
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM184A MUTATED        1      1      0      2      0      0
  TMEM184A WILD-TYPE     16     31     13     30     16      7
D393V10, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(394) Variable = NBPF9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF9 MUTATED        3      0      3      2
  NBPF9 WILD-TYPE     16     53     27     22
D394V1, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             0              53
  CLUS_3             3              27
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF9 MUTATED        2      1      2      3
  NBPF9 WILD-TYPE     33     29     32     23
D394V2, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF9 MUTATED        4      0      1      1      0
  NBPF9 WILD-TYPE     25     18     12      8     13
D394V3, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF9 MUTATED        5      0      0      1      0
  NBPF9 WILD-TYPE     27     18     12      9     10
D394V4, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             5              27
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF9 MUTATED        1      0      3      3      1
  NBPF9 WILD-TYPE     25     20     25     22     19
D394V5, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        3      4      1
  NBPF9 WILD-TYPE     45     49     17
D394V6, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF9 MUTATED        1      3      1      3      0
  NBPF9 WILD-TYPE     36     28     16     18     13
D394V7, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF9 MUTATED        5      2      1
  NBPF9 WILD-TYPE     66     25     20
D394V8, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF9 MUTATED        0      1      2      0      2      2      1
  NBPF9 WILD-TYPE     18      7      8      8     34     23     11
D394V9, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBPF9 MUTATED        1      2      1      3      1      0
  NBPF9 WILD-TYPE     16     30     12     29     15      7
D394V10, multiclass
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(395) Variable = KIAA1804 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        2      3      2      0
  KIAA1804 WILD-TYPE     17     50     28     24
D395V1, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                3                 50
  CLUS_3                2                 28
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        6      1      0      0
  KIAA1804 WILD-TYPE     29     29     34     26
D395V2, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                6                 29
  CLUS_2                1                 29
  CLUS_3                0                 34
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1804 MUTATED        3      1      0      1      1
  KIAA1804 WILD-TYPE     26     17     13      8     12
D395V3, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                1                 17
  CLUS_3                0                 13
  CLUS_4                1                  8
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1804 MUTATED        4      2      0      0      0
  KIAA1804 WILD-TYPE     28     16     12     10     10
D395V4, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                4                 28
  CLUS_2                2                 16
  CLUS_3                0                 12
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1804 MUTATED        5      0      0      2      0
  KIAA1804 WILD-TYPE     21     20     28     23     20
D395V5, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                5                 21
  CLUS_2                0                 20
  CLUS_3                0                 28
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        2      5      0
  KIAA1804 WILD-TYPE     46     48     18
D395V6, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                5                 48
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1804 MUTATED        2      1      1      2      1
  KIAA1804 WILD-TYPE     35     30     16     19     12
D395V7, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                1                 30
  CLUS_3                1                 16
  CLUS_4                2                 19
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        6      1      0
  KIAA1804 WILD-TYPE     65     26     21
D395V8, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                6                 65
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1804 MUTATED        1      1      1      0      1      1      1
  KIAA1804 WILD-TYPE     17      7      9      8     35     24     11
D395V9, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                1                 35
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1804 MUTATED        2      1      1      2      0      0
  KIAA1804 WILD-TYPE     15     31     12     30     16      7
D395V10, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                1                 31
  CLUS_3                1                 12
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(396) Variable = MAML3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAML3 MUTATED        0      1      5      1
  MAML3 WILD-TYPE     19     52     25     23
D396V1, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             5              25
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAML3 MUTATED        2      1      0      4
  MAML3 WILD-TYPE     33     29     34     22
D396V2, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             4              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAML3 MUTATED        1      0      0      2      1
  MAML3 WILD-TYPE     28     18     13      7     12
D396V3, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAML3 MUTATED        3      0      0      1      0
  MAML3 WILD-TYPE     29     18     12      9     10
D396V4, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAML3 MUTATED        0      0      0      4      3
  MAML3 WILD-TYPE     26     20     28     21     17
D396V5, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             4              21
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        4      1      2
  MAML3 WILD-TYPE     44     52     16
D396V6, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAML3 MUTATED        1      4      1      1      0
  MAML3 WILD-TYPE     36     27     16     20     13
D396V7, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             4              27
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        3      3      1
  MAML3 WILD-TYPE     68     24     20
D396V8, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAML3 MUTATED        0      0      3      0      1      2      1
  MAML3 WILD-TYPE     18      8      7      8     35     23     11
D396V9, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             3               7
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAML3 MUTATED        1      0      1      4      1      0
  MAML3 WILD-TYPE     16     32     12     28     15      7
D396V10, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             4              28
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(397) Variable = NBPF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF3 MUTATED        2      7      2      1
  NBPF3 WILD-TYPE     17     46     28     23
D397V1, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             7              46
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF3 MUTATED        6      0      5      1
  NBPF3 WILD-TYPE     29     30     29     25
D397V2, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             6              29
  CLUS_2             0              30
  CLUS_3             5              29
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF3 MUTATED        1      1      3      1      2
  NBPF3 WILD-TYPE     28     17     10      8     11
D397V3, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             3              10
  CLUS_4             1               8
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF3 MUTATED        3      3      2      0      0
  NBPF3 WILD-TYPE     29     15     10     10     10
D397V4, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             3              15
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF3 MUTATED        4      1      4      2      1
  NBPF3 WILD-TYPE     22     19     24     23     19
D397V5, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             1              19
  CLUS_3             4              24
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF3 MUTATED        3      9      0
  NBPF3 WILD-TYPE     45     44     18
D397V6, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             9              44
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF3 MUTATED        3      4      2      2      1
  NBPF3 WILD-TYPE     34     27     15     19     12
D397V7, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             4              27
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF3 MUTATED       10      2      0
  NBPF3 WILD-TYPE     61     25     21
D397V8, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1            10              61
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF3 MUTATED        3      1      1      1      4      2      0
  NBPF3 WILD-TYPE     15      7      9      7     32     23     12
D397V9, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             4              32
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBPF3 MUTATED        4      3      2      3      0      0
  NBPF3 WILD-TYPE     13     29     11     29     16      7
D397V10, multiclass
        clus
vv       NBPF3 MUTATED NBPF3 WILD-TYPE
  CLUS_1             4              13
  CLUS_2             3              29
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(398) Variable = TRAF3IP2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP2 MUTATED        0      3      1      0
  TRAF3IP2 WILD-TYPE     19     50     29     24
D398V1, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                3                 50
  CLUS_3                1                 29
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP2 MUTATED        1      2      1      0
  TRAF3IP2 WILD-TYPE     34     28     33     26
D398V2, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                2                 28
  CLUS_3                1                 33
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAF3IP2 MUTATED        0      0      1      0      0
  TRAF3IP2 WILD-TYPE     29     18     12      9     13
D398V3, multiclass
[1] "Remove cluster labels:" "TRAF3IP2 MUTATED"      
clus
  TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-3A-A9IH         TCGA-3A-A9IU         TCGA-3A-A9IX 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-3A-A9IZ         TCGA-3E-AAAZ         TCGA-F2-A44G 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAF3IP2 MUTATED        0      0      1      0      0
  TRAF3IP2 WILD-TYPE     32     18     11     10     10
D398V4, multiclass
[1] "Remove cluster labels:" "TRAF3IP2 MUTATED"      
clus
  TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-3A-A9IH         TCGA-3A-A9IU         TCGA-3A-A9IX 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-3A-A9IZ         TCGA-3E-AAAZ         TCGA-F2-A44G 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" "TRAF3IP2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAF3IP2 MUTATED        0      1      2      1      0
  TRAF3IP2 WILD-TYPE     26     19     26     24     20
D398V5, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 19
  CLUS_3                2                 26
  CLUS_4                1                 24
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP2 MUTATED        2      1      1
  TRAF3IP2 WILD-TYPE     46     52     17
D398V6, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                1                 52
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAF3IP2 MUTATED        1      1      1      1      0
  TRAF3IP2 WILD-TYPE     36     30     16     20     13
D398V7, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                1                 30
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP2 MUTATED        2      1      1
  TRAF3IP2 WILD-TYPE     69     26     20
D398V8, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRAF3IP2 MUTATED        0      0      0      0      2      1      1
  TRAF3IP2 WILD-TYPE     18      8     10      8     34     24     11
D398V9, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                0                 10
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                1                 24
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRAF3IP2 MUTATED        0      2      0      1      0      1
  TRAF3IP2 WILD-TYPE     17     30     13     31     16      6
D398V10, multiclass
        clus
vv       TRAF3IP2 MUTATED TRAF3IP2 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                2                 30
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                0                 16
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(399) Variable = SMARCC2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCC2 MUTATED        1      1      2      1
  SMARCC2 WILD-TYPE     18     52     28     23
D399V1, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCC2 MUTATED        4      0      0      1
  SMARCC2 WILD-TYPE     31     30     34     25
D399V2, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               4                31
  CLUS_2               0                30
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        3      0      0      1      1
  SMARCC2 WILD-TYPE     26     18     13      8     12
D399V3, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        3      1      0      1      0
  SMARCC2 WILD-TYPE     29     17     12      9     10
D399V4, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        3      0      0      1      1
  SMARCC2 WILD-TYPE     23     20     28     24     19
D399V5, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCC2 MUTATED        1      4      0
  SMARCC2 WILD-TYPE     47     49     18
D399V6, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               4                49
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        0      2      0      2      1
  SMARCC2 WILD-TYPE     37     29     17     19     12
D399V7, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               2                29
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCC2 MUTATED        5      0      0
  SMARCC2 WILD-TYPE     66     27     21
D399V8, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               5                66
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCC2 MUTATED        1      1      1      1      1      0      0
  SMARCC2 WILD-TYPE     17      7      9      7     35     25     12
D399V9, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCC2 MUTATED        1      0      3      1      0      0
  SMARCC2 WILD-TYPE     16     32     10     31     16      7
D399V10, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               3                10
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(400) Variable = DNAH5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH5 MUTATED        2      4      2      3
  DNAH5 WILD-TYPE     17     49     28     21
D400V1, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             4              49
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH5 MUTATED        4      1      3      3
  DNAH5 WILD-TYPE     31     29     31     23
D400V2, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH5 MUTATED        3      0      0      2      0
  DNAH5 WILD-TYPE     26     18     13      7     13
D400V3, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH5 MUTATED        4      0      0      1      0
  DNAH5 WILD-TYPE     28     18     12      9     10
D400V4, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH5 MUTATED        1      3      3      3      1
  DNAH5 WILD-TYPE     25     17     25     22     19
D400V5, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              17
  CLUS_3             3              25
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH5 MUTATED        4      5      2
  DNAH5 WILD-TYPE     44     48     16
D400V6, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             5              48
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH5 MUTATED        2      1      3      1      4
  DNAH5 WILD-TYPE     35     30     14     20      9
D400V7, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             3              14
  CLUS_4             1              20
  CLUS_5             4               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH5 MUTATED        6      2      3
  DNAH5 WILD-TYPE     65     25     18
D400V8, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             2              25
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH5 MUTATED        3      1      1      1      1      1      3
  DNAH5 WILD-TYPE     15      7      9      7     35     24      9
D400V9, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             3               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH5 MUTATED        3      1      1      5      1      0
  DNAH5 WILD-TYPE     14     31     12     27     15      7
D400V10, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             5              27
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(401) Variable = C18ORF19 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        2      1      0      0
  C18ORF19 WILD-TYPE     17     52     30     24
D401V1, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                1                 52
  CLUS_3                0                 30
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        1      1      1      0
  C18ORF19 WILD-TYPE     34     29     33     26
D401V2, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 29
  CLUS_3                1                 33
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C18ORF19 MUTATED        1      0      2      0      0
  C18ORF19 WILD-TYPE     28     18     11      9     13
D401V3, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                0                 18
  CLUS_3                2                 11
  CLUS_4                0                  9
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C18ORF19 MUTATED        1      0      2      0      0
  C18ORF19 WILD-TYPE     31     18     10     10     10
D401V4, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                0                 18
  CLUS_3                2                 10
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C18ORF19 MUTATED        0      0      2      0      0
  C18ORF19 WILD-TYPE     26     20     26     25     20
D401V5, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                117 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABP         TCGA-2J-AABR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABT         TCGA-2J-AABU         TCGA-2J-AABV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQE         TCGA-2L-AAQI 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQJ         TCGA-2L-AAQL         TCGA-2L-AAQM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9I5         TCGA-3A-A9I7         TCGA-3A-A9I9 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IC         TCGA-3A-A9IH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IJ         TCGA-3A-A9IL         TCGA-3A-A9IO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IR         TCGA-3A-A9IS         TCGA-3A-A9IU 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IV         TCGA-3A-A9IX         TCGA-3A-A9IZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9J0         TCGA-3E-AAAY         TCGA-3E-AAAZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-7273         TCGA-F2-A44G         TCGA-F2-A7TX 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPU         TCGA-FB-AAPZ         TCGA-FB-AAQ0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ2         TCGA-FB-AAQ3 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ6         TCGA-H8-A6C1         TCGA-HV-A7OL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HV-A7OP         TCGA-HV-AA8V         TCGA-HV-AA8X 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7925         TCGA-HZ-8637 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A49I         TCGA-HZ-A77O         TCGA-HZ-A77P 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A77Q         TCGA-HZ-A8P0         TCGA-HZ-A8P1 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A9TJ         TCGA-IB-7651         TCGA-IB-7652 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A6UG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUQ         TCGA-IB-AAUR         TCGA-IB-AAUS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-RL-AAAS         TCGA-S4-A8RO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XN-A8T3         TCGA-XN-A8T5         TCGA-YB-A89D 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C18ORF19 MUTATED        1      1      0
  C18ORF19 WILD-TYPE     47     52     18
D401V6, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                117 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABP         TCGA-2J-AABR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABT         TCGA-2J-AABU         TCGA-2J-AABV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQE         TCGA-2L-AAQI 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQJ         TCGA-2L-AAQL         TCGA-2L-AAQM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9I5         TCGA-3A-A9I7         TCGA-3A-A9I9 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IC         TCGA-3A-A9IH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IJ         TCGA-3A-A9IL         TCGA-3A-A9IO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IR         TCGA-3A-A9IS         TCGA-3A-A9IU 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IV         TCGA-3A-A9IX         TCGA-3A-A9IZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9J0         TCGA-3E-AAAY         TCGA-3E-AAAZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-7273         TCGA-F2-A44G         TCGA-F2-A7TX 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPU         TCGA-FB-AAPZ         TCGA-FB-AAQ0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ2         TCGA-FB-AAQ3 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ6         TCGA-H8-A6C1         TCGA-HV-A7OL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HV-A7OP         TCGA-HV-AA8V         TCGA-HV-AA8X 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7925         TCGA-HZ-8637 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A49I         TCGA-HZ-A77O         TCGA-HZ-A77P 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A77Q         TCGA-HZ-A8P0         TCGA-HZ-A8P1 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A9TJ         TCGA-IB-7651         TCGA-IB-7652 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A6UG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUQ         TCGA-IB-AAUR         TCGA-IB-AAUS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-RL-AAAS         TCGA-S4-A8RO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XN-A8T3         TCGA-XN-A8T5         TCGA-YB-A89D 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C18ORF19 MUTATED        2      0      0      0      0
  C18ORF19 WILD-TYPE     35     31     17     21     13
D401V7, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                117 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABP         TCGA-2J-AABR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABT         TCGA-2J-AABU         TCGA-2J-AABV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQE         TCGA-2L-AAQI 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQJ         TCGA-2L-AAQL         TCGA-2L-AAQM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9I5         TCGA-3A-A9I7         TCGA-3A-A9I9 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IC         TCGA-3A-A9IH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IJ         TCGA-3A-A9IL         TCGA-3A-A9IO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IR         TCGA-3A-A9IS         TCGA-3A-A9IU 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IV         TCGA-3A-A9IX         TCGA-3A-A9IZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9J0         TCGA-3E-AAAY         TCGA-3E-AAAZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-7273         TCGA-F2-A44G         TCGA-F2-A7TX 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPU         TCGA-FB-AAPZ         TCGA-FB-AAQ0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ2         TCGA-FB-AAQ3 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ6         TCGA-H8-A6C1         TCGA-HV-A7OL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HV-A7OP         TCGA-HV-AA8V         TCGA-HV-AA8X 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7925         TCGA-HZ-8637 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A49I         TCGA-HZ-A77O         TCGA-HZ-A77P 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A77Q         TCGA-HZ-A8P0         TCGA-HZ-A8P1 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A9TJ         TCGA-IB-7651         TCGA-IB-7652 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A6UG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUQ         TCGA-IB-AAUR         TCGA-IB-AAUS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-RL-AAAS         TCGA-S4-A8RO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XN-A8T3         TCGA-XN-A8T5         TCGA-YB-A89D 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C18ORF19 MUTATED        2      0      0
  C18ORF19 WILD-TYPE     69     27     21
D401V8, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                117 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABP         TCGA-2J-AABR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABT         TCGA-2J-AABU         TCGA-2J-AABV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQE         TCGA-2L-AAQI 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQJ         TCGA-2L-AAQL         TCGA-2L-AAQM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9I5         TCGA-3A-A9I7         TCGA-3A-A9I9 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IC         TCGA-3A-A9IH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IJ         TCGA-3A-A9IL         TCGA-3A-A9IO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IR         TCGA-3A-A9IS         TCGA-3A-A9IU 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IV         TCGA-3A-A9IX         TCGA-3A-A9IZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9J0         TCGA-3E-AAAY         TCGA-3E-AAAZ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-7273         TCGA-F2-A44G         TCGA-F2-A7TX 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPU         TCGA-FB-AAPZ         TCGA-FB-AAQ0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ2         TCGA-FB-AAQ3 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ6         TCGA-H8-A6C1         TCGA-HV-A7OL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HV-A7OP         TCGA-HV-AA8V         TCGA-HV-AA8X 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7925         TCGA-HZ-8637 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A49I         TCGA-HZ-A77O         TCGA-HZ-A77P 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A77Q         TCGA-HZ-A8P0         TCGA-HZ-A8P1 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A9TJ         TCGA-IB-7651         TCGA-IB-7652 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A6UG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUQ         TCGA-IB-AAUR         TCGA-IB-AAUS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-RL-AAAS         TCGA-S4-A8RO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUG 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XN-A8T3         TCGA-XN-A8T5         TCGA-YB-A89D 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C18ORF19 MUTATED        0      0      1      0      1      0      0
  C18ORF19 WILD-TYPE     18      8      9      8     35     25     12
D401V9, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                115 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABP         TCGA-2J-AABR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABT         TCGA-2J-AABU         TCGA-2L-AAQA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQE         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9I7         TCGA-3A-A9I9         TCGA-3A-A9IB 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IC         TCGA-3A-A9IH         TCGA-3A-A9IJ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IL         TCGA-3A-A9IO         TCGA-3A-A9IR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IS         TCGA-3A-A9IU         TCGA-3A-A9IV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3A-A9J0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3E-AAAY         TCGA-3E-AAAZ         TCGA-F2-7273 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A7TX         TCGA-F2-A8YN 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-AAPP 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPQ         TCGA-FB-AAPS         TCGA-FB-AAPU 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ0         TCGA-FB-AAQ1 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ2         TCGA-FB-AAQ3         TCGA-FB-AAQ6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HV-A7OL         TCGA-HV-AA8V 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HV-AA8X         TCGA-HZ-7918         TCGA-HZ-7925 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-8637         TCGA-HZ-A49I         TCGA-HZ-A77O 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A77P         TCGA-HZ-A77Q         TCGA-HZ-A8P0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A8P1         TCGA-HZ-A9TJ         TCGA-IB-7651 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-IB-A7LX         TCGA-IB-A7M4 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUQ         TCGA-IB-AAUR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-RL-AAAS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUG         TCGA-XD-AAUH         TCGA-XD-AAUI 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T3         TCGA-XN-A8T5 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-YB-A89D         TCGA-YH-A8SY         TCGA-YY-A8LH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-Z5-AAPL 
"C18ORF19 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C18ORF19 MUTATED        1      1      0      0      0      0
  C18ORF19 WILD-TYPE     16     31     13     32     16      7
D401V10, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                115 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABP         TCGA-2J-AABR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2J-AABT         TCGA-2J-AABU         TCGA-2L-AAQA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQE         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9I7         TCGA-3A-A9I9         TCGA-3A-A9IB 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IC         TCGA-3A-A9IH         TCGA-3A-A9IJ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IL         TCGA-3A-A9IO         TCGA-3A-A9IR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IS         TCGA-3A-A9IU         TCGA-3A-A9IV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3A-A9J0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-3E-AAAY         TCGA-3E-AAAZ         TCGA-F2-7273 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A7TX         TCGA-F2-A8YN 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-AAPP 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPQ         TCGA-FB-AAPS         TCGA-FB-AAPU 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ0         TCGA-FB-AAQ1 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-FB-AAQ2         TCGA-FB-AAQ3         TCGA-FB-AAQ6 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HV-A7OL         TCGA-HV-AA8V 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HV-AA8X         TCGA-HZ-7918         TCGA-HZ-7925 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-8637         TCGA-HZ-A49I         TCGA-HZ-A77O 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A77P         TCGA-HZ-A77Q         TCGA-HZ-A8P0 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-HZ-A8P1         TCGA-HZ-A9TJ         TCGA-IB-7651 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-IB-A7LX         TCGA-IB-A7M4 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUQ         TCGA-IB-AAUR 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-RL-AAAS 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUG         TCGA-XD-AAUH         TCGA-XD-AAUI 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T3         TCGA-XN-A8T5 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-YB-A89D         TCGA-YH-A8SY         TCGA-YY-A8LH 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-Z5-AAPL 
"C18ORF19 WILD-TYPE" 

Clustering(402) Variable = KIF20B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF20B MUTATED        0      1      4      0
  KIF20B WILD-TYPE     19     52     26     24
D402V1, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              4               26
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF20B MUTATED        2      1      1      1
  KIF20B WILD-TYPE     33     29     33     25
D402V2, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        0      0      0      1      1
  KIF20B WILD-TYPE     29     18     13      8     12
D402V3, multiclass
[1] "Remove cluster labels:" "KIF20B MUTATED"        
clus
  KIF20B MUTATED KIF20B WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-AA2A 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        1      0      1      0      0
  KIF20B WILD-TYPE     31     18     11     10     10
D402V4, multiclass
[1] "Remove cluster labels:" "KIF20B MUTATED"        
clus
  KIF20B MUTATED KIF20B WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-AA2A 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" "KIF20B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        1      0      1      2      1
  KIF20B WILD-TYPE     25     20     27     23     19
D402V5, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF20B MUTATED        2      3      0
  KIF20B WILD-TYPE     46     50     18
D402V6, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        0      1      0      4      0
  KIF20B WILD-TYPE     37     30     17     17     13
D402V7, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              4               17
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF20B MUTATED        4      1      0
  KIF20B WILD-TYPE     67     26     21
D402V8, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF20B MUTATED        0      0      1      1      1      0      0
  KIF20B WILD-TYPE     18      8      9      7     35     25     12
D402V9, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF20B MUTATED        0      0      2      1      0      0
  KIF20B WILD-TYPE     17     32     11     31     16      7
D402V10, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              2               11
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(403) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        2      2      1      2
  KDM6A WILD-TYPE     17     51     29     22
D403V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              17
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        0      3      4      0
  KDM6A WILD-TYPE     35     27     30     26
D403V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              35
  CLUS_2             3              27
  CLUS_3             4              30
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        3      1      0      1      0
  KDM6A WILD-TYPE     26     17     13      8     13
D403V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        3      1      0      1      0
  KDM6A WILD-TYPE     29     17     12      9     10
D403V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        3      0      1      2      0
  KDM6A WILD-TYPE     23     20     27     23     20
D403V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        4      2      0
  KDM6A WILD-TYPE     44     51     18
D403V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        2      1      3      0      0
  KDM6A WILD-TYPE     35     30     14     21     13
D403V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             3              14
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        4      2      0
  KDM6A WILD-TYPE     67     25     21
D403V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM6A MUTATED        1      0      0      0      3      1      1
  KDM6A WILD-TYPE     17      8     10      8     33     24     11
D403V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6A MUTATED        2      2      0      2      0      0
  KDM6A WILD-TYPE     15     30     13     30     16      7
D403V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(404) Variable = PRG4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRG4 MUTATED        1      5      5      1
  PRG4 WILD-TYPE     18     48     25     23
D404V1, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            5             48
  CLUS_3            5             25
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRG4 MUTATED        4      0      5      3
  PRG4 WILD-TYPE     31     30     29     23
D404V2, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            0             30
  CLUS_3            5             29
  CLUS_4            3             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRG4 MUTATED        1      0      0      1      4
  PRG4 WILD-TYPE     28     18     13      8      9
D404V3, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            4              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRG4 MUTATED        3      1      0      0      2
  PRG4 WILD-TYPE     29     17     12     10      8
D404V4, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRG4 MUTATED        2      1      4      2      3
  PRG4 WILD-TYPE     24     19     24     23     17
D404V5, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             19
  CLUS_3            4             24
  CLUS_4            2             23
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRG4 MUTATED        3      7      2
  PRG4 WILD-TYPE     45     46     16
D404V6, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            7             46
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRG4 MUTATED        3      4      0      4      1
  PRG4 WILD-TYPE     34     27     17     17     12
D404V7, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            4             27
  CLUS_3            0             17
  CLUS_4            4             17
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRG4 MUTATED       10      0      2
  PRG4 WILD-TYPE     61     27     19
D404V8, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1           10             61
  CLUS_2            0             27
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRG4 MUTATED        0      0      1      1      3      4      2
  PRG4 WILD-TYPE     18      8      9      7     33     21     10
D404V9, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            4             21
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRG4 MUTATED        2      3      2      3      1      0
  PRG4 WILD-TYPE     15     29     11     29     15      7
D404V10, multiclass
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            3             29
  CLUS_3            2             11
  CLUS_4            3             29
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(405) Variable = PHF14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        0      0      3      0
  PHF14 WILD-TYPE     19     53     27     24
D405V1, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             0              53
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        1      2      0      0
  PHF14 WILD-TYPE     34     28     34     26
D405V2, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF14 MUTATED        1      1      0      1      0
  PHF14 WILD-TYPE     28     17     13      8     13
D405V3, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF14 MUTATED        2      1      0      0      0
  PHF14 WILD-TYPE     30     17     12     10     10
D405V4, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF14 MUTATED        0      0      0      3      0
  PHF14 WILD-TYPE     26     20     28     22     20
D405V5, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        3      0      0
  PHF14 WILD-TYPE     45     53     18
D405V6, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             0              53
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF14 MUTATED        0      1      0      2      0
  PHF14 WILD-TYPE     37     30     17     19     13
D405V7, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        1      2      0
  PHF14 WILD-TYPE     70     25     21
D405V8, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF14 MUTATED        1      0      1      1      0      0      0
  PHF14 WILD-TYPE     17      8      9      7     36     25     12
D405V9, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF14 MUTATED        0      0      0      3      0      0
  PHF14 WILD-TYPE     17     32     13     29     16      7
D405V10, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(406) Variable = RASGRF2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRF2 MUTATED        1      3      1      1
  RASGRF2 WILD-TYPE     18     50     29     23
D406V1, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               3                50
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRF2 MUTATED        2      2      2      0
  RASGRF2 WILD-TYPE     33     28     32     26
D406V2, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASGRF2 MUTATED        2      2      0      1      0
  RASGRF2 WILD-TYPE     27     16     13      8     13
D406V3, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               2                16
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASGRF2 MUTATED        2      2      0      1      0
  RASGRF2 WILD-TYPE     30     16     12      9     10
D406V4, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               2                16
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASGRF2 MUTATED        2      1      1      2      0
  RASGRF2 WILD-TYPE     24     19     27     23     20
D406V5, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RASGRF2 MUTATED        2      3      1
  RASGRF2 WILD-TYPE     46     50     17
D406V6, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               3                50
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASGRF2 MUTATED        1      1      1      3      0
  RASGRF2 WILD-TYPE     36     30     16     18     13
D406V7, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RASGRF2 MUTATED        4      1      1
  RASGRF2 WILD-TYPE     67     26     20
D406V8, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASGRF2 MUTATED        0      0      2      0      2      1      1
  RASGRF2 WILD-TYPE     18      8      8      8     34     24     11
D406V9, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASGRF2 MUTATED        0      2      1      2      0      1
  RASGRF2 WILD-TYPE     17     30     12     30     16      6
D406V10, multiclass
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(407) Variable = PNMAL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNMAL1 MUTATED        0      1      2      1
  PNMAL1 WILD-TYPE     19     52     28     23
D407V1, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNMAL1 MUTATED        2      2      0      0
  PNMAL1 WILD-TYPE     33     28     34     26
D407V2, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMAL1 MUTATED        2      0      0      1      0
  PNMAL1 WILD-TYPE     27     18     13      8     13
D407V3, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMAL1 MUTATED        3      0      0      0      0
  PNMAL1 WILD-TYPE     29     18     12     10     10
D407V4, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMAL1 MUTATED        0      2      0      2      0
  PNMAL1 WILD-TYPE     26     18     28     23     20
D407V5, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNMAL1 MUTATED        2      1      1
  PNMAL1 WILD-TYPE     46     52     17
D407V6, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMAL1 MUTATED        0      0      0      3      1
  PNMAL1 WILD-TYPE     37     31     17     18     12
D407V7, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              3               18
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNMAL1 MUTATED        1      1      2
  PNMAL1 WILD-TYPE     70     26     19
D407V8, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PNMAL1 MUTATED        1      0      1      0      0      1      1
  PNMAL1 WILD-TYPE     17      8      9      8     36     24     11
D407V9, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNMAL1 MUTATED        0      0      0      2      1      1
  PNMAL1 WILD-TYPE     17     32     13     30     15      6
D407V10, multiclass
        clus
vv       PNMAL1 MUTATED PNMAL1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(408) Variable = FOXP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXP2 MUTATED        2      5      2      1
  FOXP2 WILD-TYPE     17     48     28     23
D408V1, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             5              48
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXP2 MUTATED        5      2      2      1
  FOXP2 WILD-TYPE     30     28     32     25
D408V2, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXP2 MUTATED        2      1      2      1      1
  FOXP2 WILD-TYPE     27     17     11      8     12
D408V3, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXP2 MUTATED        4      1      2      0      0
  FOXP2 WILD-TYPE     28     17     10     10     10
D408V4, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             1              17
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXP2 MUTATED        3      0      1      3      2
  FOXP2 WILD-TYPE     23     20     27     22     18
D408V5, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        4      5      0
  FOXP2 WILD-TYPE     44     48     18
D408V6, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXP2 MUTATED        3      3      2      1      0
  FOXP2 WILD-TYPE     34     28     15     20     13
D408V7, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             3              28
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        7      2      0
  FOXP2 WILD-TYPE     64     25     21
D408V8, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXP2 MUTATED        1      0      2      2      2      2      0
  FOXP2 WILD-TYPE     17      8      8      6     34     23     12
D408V9, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             2               6
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXP2 MUTATED        0      4      2      3      0      0
  FOXP2 WILD-TYPE     17     28     11     29     16      7
D408V10, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             4              28
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(409) Variable = CGREF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CGREF1 MUTATED        2      4      0      0
  CGREF1 WILD-TYPE     17     49     30     24
D409V1, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              4               49
  CLUS_3              0               30
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CGREF1 MUTATED        4      1      1      0
  CGREF1 WILD-TYPE     31     29     33     26
D409V2, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CGREF1 MUTATED        2      0      1      0      0
  CGREF1 WILD-TYPE     27     18     12      9     13
D409V3, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CGREF1 MUTATED        2      0      1      0      0
  CGREF1 WILD-TYPE     30     18     11     10     10
D409V4, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CGREF1 MUTATED        3      1      1      1      0
  CGREF1 WILD-TYPE     23     19     27     24     20
D409V5, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CGREF1 MUTATED        4      2      0
  CGREF1 WILD-TYPE     44     51     18
D409V6, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CGREF1 MUTATED        3      0      2      0      1
  CGREF1 WILD-TYPE     34     31     15     21     12
D409V7, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              0               31
  CLUS_3              2               15
  CLUS_4              0               21
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CGREF1 MUTATED        3      2      1
  CGREF1 WILD-TYPE     68     25     20
D409V8, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               25
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CGREF1 MUTATED        2      0      0      0      2      1      1
  CGREF1 WILD-TYPE     16      8     10      8     34     24     11
D409V9, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CGREF1 MUTATED        2      1      0      3      0      0
  CGREF1 WILD-TYPE     15     31     13     29     16      7
D409V10, multiclass
        clus
vv       CGREF1 MUTATED CGREF1 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(410) Variable = ZNF780A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF780A MUTATED        0      3      3      1
  ZNF780A WILD-TYPE     19     50     27     23
D410V1, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF780A MUTATED        3      1      2      1
  ZNF780A WILD-TYPE     32     29     32     25
D410V2, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               2                32
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF780A MUTATED        2      2      1      0      1
  ZNF780A WILD-TYPE     27     16     12      9     12
D410V3, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               2                27
  CLUS_2               2                16
  CLUS_3               1                12
  CLUS_4               0                 9
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF780A MUTATED        3      1      1      0      1
  ZNF780A WILD-TYPE     29     17     11     10      9
D410V4, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF780A MUTATED        4      0      1      1      1
  ZNF780A WILD-TYPE     22     20     27     24     19
D410V5, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               4                22
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        2      5      0
  ZNF780A WILD-TYPE     46     48     18
D410V6, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               2                46
  CLUS_2               5                48
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF780A MUTATED        5      2      0      0      0
  ZNF780A WILD-TYPE     32     29     17     21     13
D410V7, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               5                32
  CLUS_2               2                29
  CLUS_3               0                17
  CLUS_4               0                21
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF780A MUTATED        6      1      0
  ZNF780A WILD-TYPE     65     26     21
D410V8, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               6                65
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF780A MUTATED        0      1      0      2      4      0      0
  ZNF780A WILD-TYPE     18      7     10      6     32     25     12
D410V9, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               0                18
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               2                 6
  CLUS_5               4                32
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF780A MUTATED        2      3      1      1      0      0
  ZNF780A WILD-TYPE     15     29     12     31     16      7
D410V10, multiclass
        clus
vv       ZNF780A MUTATED ZNF780A WILD-TYPE
  CLUS_1               2                15
  CLUS_2               3                29
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(411) Variable = ADC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADC MUTATED        0      2      1      0
  ADC WILD-TYPE     19     51     29     24
D411V1, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           0            19
  CLUS_2           2            51
  CLUS_3           1            29
  CLUS_4           0            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADC MUTATED        0      0      1      2
  ADC WILD-TYPE     35     30     33     24
D411V2, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           0            35
  CLUS_2           0            30
  CLUS_3           1            33
  CLUS_4           2            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADC MUTATED        1      0      0      0      1
  ADC WILD-TYPE     28     18     13      9     12
D411V3, multiclass
[1] "Remove cluster labels:" "ADC MUTATED"           
clus
  ADC MUTATED ADC WILD-TYPE 
            2            80 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FB-AAPP    TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FZ-5919    TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5922    TCGA-FZ-5923 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FZ-5924    TCGA-FZ-5926    TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M    TCGA-S4-A8RO    TCGA-US-A779 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADC MUTATED        0      0      0      1      1
  ADC WILD-TYPE     32     18     12      9      9
D411V4, multiclass
[1] "Remove cluster labels:" "ADC MUTATED"           
clus
  ADC MUTATED ADC WILD-TYPE 
            2            80 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FB-AAPP    TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FZ-5919    TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5922    TCGA-FZ-5923 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FZ-5924    TCGA-FZ-5926    TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M    TCGA-S4-A8RO    TCGA-US-A779 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-US-A77E    TCGA-US-A77G    TCGA-XD-AAUH    TCGA-XD-AAUI    TCGA-XD-AAUL 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH    TCGA-Z5-AAPL 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADC MUTATED        1      1      0      0      1
  ADC WILD-TYPE     25     19     28     25     19
D411V5, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           1            25
  CLUS_2           1            19
  CLUS_3           0            28
  CLUS_4           0            25
  CLUS_5           1            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADC MUTATED        0      2      1
  ADC WILD-TYPE     48     51     17
D411V6, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           0            48
  CLUS_2           2            51
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADC MUTATED        0      1      0      1      1
  ADC WILD-TYPE     37     30     17     20     12
D411V7, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           0            37
  CLUS_2           1            30
  CLUS_3           0            17
  CLUS_4           1            20
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADC MUTATED        2      0      1
  ADC WILD-TYPE     69     27     20
D411V8, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           2            69
  CLUS_2           0            27
  CLUS_3           1            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADC MUTATED        0      1      0      0      1      1      0
  ADC WILD-TYPE     18      7     10      8     35     24     12
D411V9, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           0            18
  CLUS_2           1             7
  CLUS_3           0            10
  CLUS_4           0             8
  CLUS_5           1            35
  CLUS_6           1            24
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADC MUTATED        1      0      1      0      1      0
  ADC WILD-TYPE     16     32     12     32     15      7
D411V10, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           1            16
  CLUS_2           0            32
  CLUS_3           1            12
  CLUS_4           0            32
  CLUS_5           1            15
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(412) Variable = FHDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHDC1 MUTATED        0      3      1      2
  FHDC1 WILD-TYPE     19     50     29     22
D412V1, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHDC1 MUTATED        1      2      2      1
  FHDC1 WILD-TYPE     34     28     32     25
D412V2, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        0      2      0      1      0
  FHDC1 WILD-TYPE     29     16     13      8     13
D412V3, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        1      2      0      0      0
  FHDC1 WILD-TYPE     31     16     12     10     10
D412V4, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        1      1      2      2      0
  FHDC1 WILD-TYPE     25     19     26     23     20
D412V5, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHDC1 MUTATED        4      1      1
  FHDC1 WILD-TYPE     44     52     17
D412V6, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        1      1      2      2      0
  FHDC1 WILD-TYPE     36     30     15     19     13
D412V7, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHDC1 MUTATED        3      2      1
  FHDC1 WILD-TYPE     68     25     20
D412V8, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FHDC1 MUTATED        2      0      2      0      0      1      1
  FHDC1 WILD-TYPE     16      8      8      8     36     24     11
D412V9, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHDC1 MUTATED        0      2      0      3      0      1
  FHDC1 WILD-TYPE     17     30     13     29     16      6
D412V10, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(413) Variable = ZNF709 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        0      6      3      0
  ZNF709 WILD-TYPE     19     47     27     24
D413V1, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              6               47
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        2      3      2      2
  ZNF709 WILD-TYPE     33     27     32     24
D413V2, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              3               27
  CLUS_3              2               32
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        1      1      0      2      1
  ZNF709 WILD-TYPE     28     17     13      7     12
D413V3, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        2      1      1      1      0
  ZNF709 WILD-TYPE     30     17     11      9     10
D413V4, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        0      4      2      2      1
  ZNF709 WILD-TYPE     26     16     26     23     19
D413V5, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               16
  CLUS_3              2               26
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        3      4      2
  ZNF709 WILD-TYPE     45     49     16
D413V6, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              4               49
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        1      2      1      3      2
  ZNF709 WILD-TYPE     36     29     16     18     11
D413V7, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              3               18
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        5      1      3
  ZNF709 WILD-TYPE     66     26     18
D413V8, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               26
  CLUS_3              3               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF709 MUTATED        1      2      1      1      1      2      1
  ZNF709 WILD-TYPE     17      6      9      7     35     23     11
D413V9, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              2                6
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF709 MUTATED        2      1      1      2      1      2
  ZNF709 WILD-TYPE     15     31     12     30     15      5
D413V10, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              2                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(414) Variable = OR2J2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2J2 MUTATED        1      1      2      0
  OR2J2 WILD-TYPE     18     52     28     24
D414V1, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2J2 MUTATED        2      1      1      0
  OR2J2 WILD-TYPE     33     29     33     26
D414V2, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J2 MUTATED        0      0      0      1      0
  OR2J2 WILD-TYPE     29     18     13      8     13
D414V3, multiclass
[1] "Remove cluster labels:" "OR2J2 MUTATED"         
clus
  OR2J2 MUTATED OR2J2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"OR2J2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J2 MUTATED        1      0      0      0      0
  OR2J2 WILD-TYPE     31     18     12     10     10
D414V4, multiclass
[1] "Remove cluster labels:" "OR2J2 MUTATED"         
clus
  OR2J2 MUTATED OR2J2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" "OR2J2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"OR2J2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J2 MUTATED        0      1      1      1      1
  OR2J2 WILD-TYPE     26     19     27     24     19
D414V5, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2J2 MUTATED        1      2      1
  OR2J2 WILD-TYPE     47     51     17
D414V6, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J2 MUTATED        0      1      0      3      0
  OR2J2 WILD-TYPE     37     30     17     18     13
D414V7, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2J2 MUTATED        3      0      1
  OR2J2 WILD-TYPE     68     27     20
D414V8, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2J2 MUTATED        0      0      1      1      1      0      1
  OR2J2 WILD-TYPE     18      8      9      7     35     25     11
D414V9, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR2J2 MUTATED        0      0      2      1      0      1
  OR2J2 WILD-TYPE     17     32     11     31     16      6
D414V10, multiclass
        clus
vv       OR2J2 MUTATED OR2J2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             2              11
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(415) Variable = PLD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD2 MUTATED        0      1      1      1
  PLD2 WILD-TYPE     19     52     29     23
D415V1, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD2 MUTATED        3      0      0      0
  PLD2 WILD-TYPE     32     30     34     26
D415V2, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLD2 MUTATED        1      0      0      1      1
  PLD2 WILD-TYPE     28     18     13      8     12
D415V3, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLD2 MUTATED        2      1      0      0      0
  PLD2 WILD-TYPE     30     17     12     10     10
D415V4, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLD2 MUTATED        1      0      1      1      0
  PLD2 WILD-TYPE     25     20     27     24     20
D415V5, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLD2 MUTATED        1      2      0
  PLD2 WILD-TYPE     47     51     18
D415V6, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLD2 MUTATED        2      0      0      1      0
  PLD2 WILD-TYPE     35     31     17     20     13
D415V7, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLD2 MUTATED        3      0      0
  PLD2 WILD-TYPE     68     27     21
D415V8, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLD2 MUTATED        0      0      1      0      2      0      0
  PLD2 WILD-TYPE     18      8      9      8     34     25     12
D415V9, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLD2 MUTATED        1      1      0      1      0      0
  PLD2 WILD-TYPE     16     31     13     31     16      7
D415V10, multiclass
        clus
vv       PLD2 MUTATED PLD2 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(416) Variable = SYCP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP1 MUTATED        1      2      1      1
  SYCP1 WILD-TYPE     18     51     29     23
D416V1, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP1 MUTATED        1      2      2      0
  SYCP1 WILD-TYPE     34     28     32     26
D416V2, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        2      0      1      0      0
  SYCP1 WILD-TYPE     27     18     12      9     13
D416V3, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        2      0      1      0      0
  SYCP1 WILD-TYPE     30     18     11     10     10
D416V4, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        1      2      1      1      0
  SYCP1 WILD-TYPE     25     18     27     24     20
D416V5, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP1 MUTATED        3      1      1
  SYCP1 WILD-TYPE     45     52     17
D416V6, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        3      0      1      0      1
  SYCP1 WILD-TYPE     34     31     16     21     12
D416V7, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP1 MUTATED        2      3      0
  SYCP1 WILD-TYPE     69     24     21
D416V8, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYCP1 MUTATED        1      0      1      0      0      1      2
  SYCP1 WILD-TYPE     17      8      9      8     36     24     10
D416V9, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYCP1 MUTATED        1      1      0      2      0      1
  SYCP1 WILD-TYPE     16     31     13     30     16      6
D416V10, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(417) Variable = RUNX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        1      2      3      1
  RUNX2 WILD-TYPE     18     51     27     23
D417V1, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        2      2      2      1
  RUNX2 WILD-TYPE     33     28     32     25
D417V2, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX2 MUTATED        1      4      0      2      0
  RUNX2 WILD-TYPE     28     14     13      7     13
D417V3, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             4              14
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX2 MUTATED        2      4      0      1      0
  RUNX2 WILD-TYPE     30     14     12      9     10
D417V4, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             4              14
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX2 MUTATED        1      0      2      3      1
  RUNX2 WILD-TYPE     25     20     26     22     19
D417V5, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        4      3      0
  RUNX2 WILD-TYPE     44     50     18
D417V6, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX2 MUTATED        2      2      1      2      0
  RUNX2 WILD-TYPE     35     29     16     19     13
D417V7, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        4      3      0
  RUNX2 WILD-TYPE     67     24     21
D417V8, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNX2 MUTATED        2      0      1      2      2      0      0
  RUNX2 WILD-TYPE     16      8      9      6     34     25     12
D417V9, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             2               6
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUNX2 MUTATED        0      2      1      4      0      0
  RUNX2 WILD-TYPE     17     30     12     28     16      7
D417V10, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             4              28
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(418) Variable = KRTAP5-3 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        2      2      2      1
  KRTAP5-3 WILD-TYPE     17     51     28     23
D418V1, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 51
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        1      1      4      1
  KRTAP5-3 WILD-TYPE     34     29     30     25
D418V2, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 29
  CLUS_3                4                 30
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-3 MUTATED        3      0      0      0      0
  KRTAP5-3 WILD-TYPE     26     18     13      9     13
D418V3, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                0                 18
  CLUS_3                0                 13
  CLUS_4                0                  9
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-3 MUTATED        3      0      0      0      0
  KRTAP5-3 WILD-TYPE     29     18     12     10     10
D418V4, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                3                 29
  CLUS_2                0                 18
  CLUS_3                0                 12
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-3 MUTATED        3      1      1      1      1
  KRTAP5-3 WILD-TYPE     23     19     27     24     19
D418V5, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                1                 19
  CLUS_3                1                 27
  CLUS_4                1                 24
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-3 MUTATED        2      4      1
  KRTAP5-3 WILD-TYPE     46     49     17
D418V6, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                4                 49
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-3 MUTATED        3      1      0      2      1
  KRTAP5-3 WILD-TYPE     34     30     17     19     12
D418V7, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                1                 30
  CLUS_3                0                 17
  CLUS_4                2                 19
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-3 MUTATED        5      1      1
  KRTAP5-3 WILD-TYPE     66     26     20
D418V8, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                5                 66
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP5-3 MUTATED        1      1      1      1      2      0      1
  KRTAP5-3 WILD-TYPE     17      7      9      7     34     25     11
D418V9, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                1                  7
  CLUS_5                2                 34
  CLUS_6                0                 25
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP5-3 MUTATED        2      2      1      1      1      0
  KRTAP5-3 WILD-TYPE     15     30     12     31     15      7
D418V10, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                2                 30
  CLUS_3                1                 12
  CLUS_4                1                 31
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(419) Variable = SSBP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        0      2      1      0
  SSBP3 WILD-TYPE     19     51     29     24
D419V1, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        2      0      0      1
  SSBP3 WILD-TYPE     33     30     34     25
D419V2, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSBP3 MUTATED        1      0      0      0      1
  SSBP3 WILD-TYPE     28     18     13      9     12
D419V3, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSBP3 MUTATED        2      0      0      0      0
  SSBP3 WILD-TYPE     30     18     12     10     10
D419V4, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSBP3 MUTATED        1      0      1      0      1
  SSBP3 WILD-TYPE     25     20     27     25     19
D419V5, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     48     51     17
D419V6, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSBP3 MUTATED        1      1      0      0      1
  SSBP3 WILD-TYPE     36     30     17     21     12
D419V7, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        2      0      1
  SSBP3 WILD-TYPE     69     27     20
D419V8, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SSBP3 MUTATED        0      0      0      0      1      0      2
  SSBP3 WILD-TYPE     18      8     10      8     35     25     10
D419V9, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SSBP3 MUTATED        1      1      0      1      0      0
  SSBP3 WILD-TYPE     16     31     13     31     16      7
D419V10, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(420) Variable = ZNF347 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF347 MUTATED        0      3      1      1
  ZNF347 WILD-TYPE     19     50     29     23
D420V1, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF347 MUTATED        3      2      0      0
  ZNF347 WILD-TYPE     32     28     34     26
D420V2, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF347 MUTATED        2      0      1      1      0
  ZNF347 WILD-TYPE     27     18     12      8     13
D420V3, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF347 MUTATED        3      0      1      0      0
  ZNF347 WILD-TYPE     29     18     11     10     10
D420V4, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF347 MUTATED        0      2      0      3      0
  ZNF347 WILD-TYPE     26     18     28     22     20
D420V5, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              0               28
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF347 MUTATED        5      0      0
  ZNF347 WILD-TYPE     43     53     18
D420V6, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              5               43
  CLUS_2              0               53
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF347 MUTATED        1      0      2      2      0
  ZNF347 WILD-TYPE     36     31     15     19     13
D420V7, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              2               15
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF347 MUTATED        3      2      0
  ZNF347 WILD-TYPE     68     25     21
D420V8, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF347 MUTATED        4      0      1      0      0      0      0
  ZNF347 WILD-TYPE     14      8      9      8     36     25     12
D420V9, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              4               14
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF347 MUTATED        1      0      0      4      0      0
  ZNF347 WILD-TYPE     16     32     13     28     16      7
D420V10, multiclass
        clus
vv       ZNF347 MUTATED ZNF347 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              4               28
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(421) Variable = IPO13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO13 MUTATED        0      1      3      0
  IPO13 WILD-TYPE     19     52     27     24
D421V1, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO13 MUTATED        3      0      1      0
  IPO13 WILD-TYPE     32     30     33     26
D421V2, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO13 MUTATED        2      1      0      1      0
  IPO13 WILD-TYPE     27     17     13      8     13
D421V3, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO13 MUTATED        3      0      0      1      0
  IPO13 WILD-TYPE     29     18     12      9     10
D421V4, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO13 MUTATED        2      0      1      1      0
  IPO13 WILD-TYPE     24     20     27     24     20
D421V5, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO13 MUTATED        1      2      1
  IPO13 WILD-TYPE     47     51     17
D421V6, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO13 MUTATED        1      1      0      2      0
  IPO13 WILD-TYPE     36     30     17     19     13
D421V7, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO13 MUTATED        3      0      1
  IPO13 WILD-TYPE     68     27     20
D421V8, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IPO13 MUTATED        0      1      1      0      1      1      0
  IPO13 WILD-TYPE     18      7      9      8     35     24     12
D421V9, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IPO13 MUTATED        0      1      1      1      1      0
  IPO13 WILD-TYPE     17     31     12     31     15      7
D421V10, multiclass
        clus
vv       IPO13 MUTATED IPO13 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(422) Variable = ACSM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSM4 MUTATED        1      0      1      2
  ACSM4 WILD-TYPE     18     53     29     22
D422V1, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSM4 MUTATED        1      2      1      0
  ACSM4 WILD-TYPE     34     28     33     26
D422V2, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSM4 MUTATED        0      0      1      2      0
  ACSM4 WILD-TYPE     29     18     12      7     13
D422V3, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSM4 MUTATED        1      0      1      1      0
  ACSM4 WILD-TYPE     31     18     11      9     10
D422V4, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSM4 MUTATED        0      1      1      2      0
  ACSM4 WILD-TYPE     26     19     27     23     20
D422V5, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSM4 MUTATED        2      1      1
  ACSM4 WILD-TYPE     46     52     17
D422V6, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSM4 MUTATED        0      1      1      2      0
  ACSM4 WILD-TYPE     37     30     16     19     13
D422V7, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSM4 MUTATED        2      1      1
  ACSM4 WILD-TYPE     69     26     20
D422V8, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACSM4 MUTATED        0      1      1      0      1      0      1
  ACSM4 WILD-TYPE     18      7      9      8     35     25     11
D422V9, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACSM4 MUTATED        1      0      0      2      0      1
  ACSM4 WILD-TYPE     16     32     13     30     16      6
D422V10, multiclass
        clus
vv       ACSM4 MUTATED ACSM4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(423) Variable = SPAG17 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG17 MUTATED        1      3      1      3
  SPAG17 WILD-TYPE     18     50     29     21
D423V1, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG17 MUTATED        3      2      2      1
  SPAG17 WILD-TYPE     32     28     32     25
D423V2, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG17 MUTATED        2      0      0      2      1
  SPAG17 WILD-TYPE     27     18     13      7     12
D423V3, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG17 MUTATED        3      0      1      1      0
  SPAG17 WILD-TYPE     29     18     11      9     10
D423V4, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG17 MUTATED        2      2      1      1      1
  SPAG17 WILD-TYPE     24     18     27     24     19
D423V5, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPAG17 MUTATED        2      3      2
  SPAG17 WILD-TYPE     46     50     16
D423V6, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG17 MUTATED        4      0      0      2      1
  SPAG17 WILD-TYPE     33     31     17     19     12
D423V7, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPAG17 MUTATED        5      0      2
  SPAG17 WILD-TYPE     66     27     19
D423V8, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               27
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPAG17 MUTATED        1      0      1      1      3      1      0
  SPAG17 WILD-TYPE     17      8      9      7     33     24     12
D423V9, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              3               33
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPAG17 MUTATED        1      3      0      1      1      1
  SPAG17 WILD-TYPE     16     29     13     31     15      6
D423V10, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(424) Variable = OGFOD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFOD1 MUTATED        0      1      0      2
  OGFOD1 WILD-TYPE     19     52     30     22
D424V1, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              0               30
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFOD1 MUTATED        1      1      1      0
  OGFOD1 WILD-TYPE     34     29     33     26
D424V2, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFOD1 MUTATED        1      0      0      1      0
  OGFOD1 WILD-TYPE     28     18     13      8     13
D424V3, multiclass
[1] "Remove cluster labels:" "OGFOD1 MUTATED"        
clus
  OGFOD1 MUTATED OGFOD1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFOD1 MUTATED        1      0      0      1      0
  OGFOD1 WILD-TYPE     31     18     12      9     10
D424V4, multiclass
[1] "Remove cluster labels:" "OGFOD1 MUTATED"        
clus
  OGFOD1 MUTATED OGFOD1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" "OGFOD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFOD1 MUTATED        1      1      0      1      0
  OGFOD1 WILD-TYPE     25     19     28     24     20
D424V5, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        2      0      1
  OGFOD1 WILD-TYPE     46     53     17
D424V6, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              0               53
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFOD1 MUTATED        1      0      1      1      0
  OGFOD1 WILD-TYPE     36     31     16     20     13
D424V7, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFOD1 MUTATED        1      1      1
  OGFOD1 WILD-TYPE     70     26     20
D424V8, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OGFOD1 MUTATED        0      0      0      0      2      0      1
  OGFOD1 WILD-TYPE     18      8     10      8     34     25     11
D424V9, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OGFOD1 MUTATED        1      0      0      1      0      1
  OGFOD1 WILD-TYPE     16     32     13     31     16      6
D424V10, multiclass
        clus
vv       OGFOD1 MUTATED OGFOD1 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(425) Variable = ZADH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZADH2 MUTATED        0      1      2      0
  ZADH2 WILD-TYPE     19     52     28     24
D425V1, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZADH2 MUTATED        1      0      0      2
  ZADH2 WILD-TYPE     34     30     34     24
D425V2, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZADH2 MUTATED        1      0      0      0      2
  ZADH2 WILD-TYPE     28     18     13      9     11
D425V3, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZADH2 MUTATED        1      0      1      0      1
  ZADH2 WILD-TYPE     31     18     11     10      9
D425V4, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZADH2 MUTATED        0      1      0      0      2
  ZADH2 WILD-TYPE     26     19     28     25     18
D425V5, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZADH2 MUTATED        0      2      1
  ZADH2 WILD-TYPE     48     51     17
D425V6, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZADH2 MUTATED        0      2      0      0      1
  ZADH2 WILD-TYPE     37     29     17     21     12
D425V7, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZADH2 MUTATED        1      0      2
  ZADH2 WILD-TYPE     70     27     19
D425V8, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZADH2 MUTATED        0      0      0      1      0      2      0
  ZADH2 WILD-TYPE     18      8     10      7     36     23     12
D425V9, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZADH2 MUTATED        0      0      1      0      2      0
  ZADH2 WILD-TYPE     17     32     12     32     14      7
D425V10, multiclass
        clus
vv       ZADH2 MUTATED ZADH2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             0              32
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(426) Variable = G2E3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED        0      0      3      1
  G2E3 WILD-TYPE     19     53     27     23
D426V1, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            0             53
  CLUS_3            3             27
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED        2      1      0      1
  G2E3 WILD-TYPE     33     29     34     25
D426V2, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  G2E3 MUTATED        1      0      0      2      1
  G2E3 WILD-TYPE     28     18     13      7     12
D426V3, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  G2E3 MUTATED        3      0      0      0      1
  G2E3 WILD-TYPE     29     18     12     10      9
D426V4, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  G2E3 MUTATED        0      1      1      1      1
  G2E3 WILD-TYPE     26     19     27     24     19
D426V5, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G2E3 MUTATED        2      0      2
  G2E3 WILD-TYPE     46     53     16
D426V6, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            0             53
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  G2E3 MUTATED        0      2      0      1      1
  G2E3 WILD-TYPE     37     29     17     20     12
D426V7, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G2E3 MUTATED        1      1      2
  G2E3 WILD-TYPE     70     26     19
D426V8, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            1             26
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  G2E3 MUTATED        1      0      1      0      0      2      0
  G2E3 WILD-TYPE     17      8      9      8     36     23     12
D426V9, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  G2E3 MUTATED        0      0      0      2      2      0
  G2E3 WILD-TYPE     17     32     13     30     14      7
D426V10, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(427) Variable = TPTE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        0      5      1      1
  TPTE2 WILD-TYPE     19     48     29     23
D427V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             5              48
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        4      0      2      1
  TPTE2 WILD-TYPE     31     30     32     25
D427V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        3      0      1      1      0
  TPTE2 WILD-TYPE     26     18     12      8     13
D427V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        4      0      1      0      0
  TPTE2 WILD-TYPE     28     18     11     10     10
D427V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        1      1      2      2      1
  TPTE2 WILD-TYPE     25     19     26     23     19
D427V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        3      4      0
  TPTE2 WILD-TYPE     45     49     18
D427V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        4      1      0      2      0
  TPTE2 WILD-TYPE     33     30     17     19     13
D427V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        7      0      0
  TPTE2 WILD-TYPE     64     27     21
D427V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPTE2 MUTATED        0      0      3      0      3      1      0
  TPTE2 WILD-TYPE     18      8      7      8     33     24     12
D427V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             3               7
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPTE2 MUTATED        1      2      2      2      0      0
  TPTE2 WILD-TYPE     16     30     11     30     16      7
D427V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(428) Variable = SCLT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        2      1      0      2
  SCLT1 WILD-TYPE     17     52     30     22
D428V1, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             0              30
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        0      1      2      2
  SCLT1 WILD-TYPE     35     29     32     24
D428V2, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        0      1      0      1      0
  SCLT1 WILD-TYPE     29     17     13      8     13
D428V3, multiclass
[1] "Remove cluster labels:" "SCLT1 MUTATED"         
clus
  SCLT1 MUTATED SCLT1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        0      1      0      1      0
  SCLT1 WILD-TYPE     32     17     12      9     10
D428V4, multiclass
[1] "Remove cluster labels:" "SCLT1 MUTATED"         
clus
  SCLT1 MUTATED SCLT1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" "SCLT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        0      0      2      0      2
  SCLT1 WILD-TYPE     26     20     26     25     18
D428V5, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             0              25
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        0      4      0
  SCLT1 WILD-TYPE     48     49     18
D428V6, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        1      3      0      0      0
  SCLT1 WILD-TYPE     36     28     17     21     13
D428V7, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        4      0      0
  SCLT1 WILD-TYPE     67     27     21
D428V8, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCLT1 MUTATED        0      1      0      1      1      1      0
  SCLT1 WILD-TYPE     18      7     10      7     35     24     12
D428V9, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCLT1 MUTATED        0      2      2      0      0      0
  SCLT1 WILD-TYPE     17     30     11     32     16      7
D428V10, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             0              32
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(429) Variable = EAF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAF2 MUTATED        0      1      1      1
  EAF2 WILD-TYPE     19     52     29     23
D429V1, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAF2 MUTATED        0      2      1      0
  EAF2 WILD-TYPE     35     28     33     26
D429V2, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        1      0      0      0      0
  EAF2 WILD-TYPE     28     18     13      9     13
D429V3, multiclass
[1] "Remove cluster labels:" "EAF2 MUTATED"          
clus
  EAF2 MUTATED EAF2 WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-US-A77G     TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-XD-AAUL     TCGA-XN-A8T5     TCGA-YH-A8SY     TCGA-YY-A8LH 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-Z5-AAPL 
"EAF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        1      0      0      0      0
  EAF2 WILD-TYPE     31     18     12     10     10
D429V4, multiclass
[1] "Remove cluster labels:" "EAF2 MUTATED"          
clus
  EAF2 MUTATED EAF2 WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-S4-A8RO     TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-US-A77G     TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-XD-AAUL     TCGA-XN-A8T5     TCGA-YH-A8SY     TCGA-YY-A8LH 
"EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" "EAF2 WILD-TYPE" 
    TCGA-Z5-AAPL 
"EAF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        0      2      0      1      0
  EAF2 WILD-TYPE     26     18     28     24     20
D429V5, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAF2 MUTATED        1      1      1
  EAF2 WILD-TYPE     47     52     17
D429V6, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        1      0      1      0      1
  EAF2 WILD-TYPE     36     31     16     21     12
D429V7, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            0             21
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAF2 MUTATED        1      2      0
  EAF2 WILD-TYPE     70     25     21
D429V8, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EAF2 MUTATED        0      0      0      0      1      1      1
  EAF2 WILD-TYPE     18      8     10      8     35     24     11
D429V9, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EAF2 MUTATED        0      1      0      1      0      1
  EAF2 WILD-TYPE     17     31     13     31     16      6
D429V10, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(430) Variable = REPS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REPS1 MUTATED        0      3      1      0
  REPS1 WILD-TYPE     19     50     29     24
D430V1, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REPS1 MUTATED        3      0      1      0
  REPS1 WILD-TYPE     32     30     33     26
D430V2, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  REPS1 MUTATED        1      0      0      2      0
  REPS1 WILD-TYPE     28     18     13      7     13
D430V3, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  REPS1 MUTATED        2      0      0      1      0
  REPS1 WILD-TYPE     30     18     12      9     10
D430V4, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  REPS1 MUTATED        1      0      1      2      0
  REPS1 WILD-TYPE     25     20     27     23     20
D430V5, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  REPS1 MUTATED        2      2      0
  REPS1 WILD-TYPE     46     51     18
D430V6, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  REPS1 MUTATED        2      1      0      1      0
  REPS1 WILD-TYPE     35     30     17     20     13
D430V7, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  REPS1 MUTATED        3      1      0
  REPS1 WILD-TYPE     68     26     21
D430V8, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  REPS1 MUTATED        0      0      1      0      2      1      0
  REPS1 WILD-TYPE     18      8      9      8     34     24     12
D430V9, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  REPS1 MUTATED        0      2      0      2      0      0
  REPS1 WILD-TYPE     17     30     13     30     16      7
D430V10, multiclass
        clus
vv       REPS1 MUTATED REPS1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(431) Variable = ZNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        3      3      1      0
  ZNF43 WILD-TYPE     16     50     29     24
D431V1, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        3      0      3      1
  ZNF43 WILD-TYPE     32     30     31     25
D431V2, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             3              31
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        1      0      2      1      0
  ZNF43 WILD-TYPE     28     18     11      8     13
D431V3, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        2      0      2      0      0
  ZNF43 WILD-TYPE     30     18     10     10     10
D431V4, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        3      1      1      1      1
  ZNF43 WILD-TYPE     23     19     27     24     19
D431V5, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED        3      4      0
  ZNF43 WILD-TYPE     45     49     18
D431V6, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        3      2      1      1      0
  ZNF43 WILD-TYPE     34     29     16     20     13
D431V7, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED        6      1      0
  ZNF43 WILD-TYPE     65     26     21
D431V8, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF43 MUTATED        1      1      1      1      3      0      0
  ZNF43 WILD-TYPE     17      7      9      7     33     25     12
D431V9, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF43 MUTATED        2      2      1      2      0      0
  ZNF43 WILD-TYPE     15     30     12     30     16      7
D431V10, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(432) Variable = PRPF4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4 MUTATED        0      1      1      1
  PRPF4 WILD-TYPE     19     52     29     23
D432V1, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4 MUTATED        1      1      1      0
  PRPF4 WILD-TYPE     34     29     33     26
D432V2, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4 MUTATED        1      0      0      0      0
  PRPF4 WILD-TYPE     28     18     13      9     13
D432V3, multiclass
[1] "Remove cluster labels:" "PRPF4 MUTATED"         
clus
  PRPF4 MUTATED PRPF4 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PRPF4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4 MUTATED        1      0      0      0      0
  PRPF4 WILD-TYPE     31     18     12     10     10
D432V4, multiclass
[1] "Remove cluster labels:" "PRPF4 MUTATED"         
clus
  PRPF4 MUTATED PRPF4 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" "PRPF4 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PRPF4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4 MUTATED        1      1      0      1      0
  PRPF4 WILD-TYPE     25     19     28     24     20
D432V5, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPF4 MUTATED        2      0      1
  PRPF4 WILD-TYPE     46     53     17
D432V6, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             0              53
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4 MUTATED        0      0      2      1      0
  PRPF4 WILD-TYPE     37     31     15     20     13
D432V7, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPF4 MUTATED        1      1      1
  PRPF4 WILD-TYPE     70     26     20
D432V8, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRPF4 MUTATED        1      0      0      0      1      0      1
  PRPF4 WILD-TYPE     17      8     10      8     35     25     11
D432V9, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRPF4 MUTATED        1      0      0      1      0      1
  PRPF4 WILD-TYPE     16     32     13     31     16      6
D432V10, multiclass
        clus
vv       PRPF4 MUTATED PRPF4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(433) Variable = CMTM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CMTM1 MUTATED        0      1      2      0
  CMTM1 WILD-TYPE     19     52     28     24
D433V1, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CMTM1 MUTATED        0      1      1      1
  CMTM1 WILD-TYPE     35     29     33     25
D433V2, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CMTM1 MUTATED        0      0      0      0      2
  CMTM1 WILD-TYPE     29     18     13      9     11
D433V3, multiclass
[1] "Remove cluster labels:" "CMTM1 MUTATED"         
clus
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CMTM1 MUTATED        0      1      0      0      1
  CMTM1 WILD-TYPE     32     17     12     10      9
D433V4, multiclass
[1] "Remove cluster labels:" "CMTM1 MUTATED"         
clus
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CMTM1 MUTATED        0      1      1      0      1
  CMTM1 WILD-TYPE     26     19     27     25     19
D433V5, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMTM1 MUTATED        0      2      1
  CMTM1 WILD-TYPE     48     51     17
D433V6, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CMTM1 MUTATED        1      1      0      1      0
  CMTM1 WILD-TYPE     36     30     17     20     13
D433V7, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CMTM1 MUTATED        2      0      1
  CMTM1 WILD-TYPE     69     27     20
D433V8, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CMTM1 MUTATED        0      0      0      1      1      0      1
  CMTM1 WILD-TYPE     18      8     10      7     35     25     11
D433V9, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CMTM1 MUTATED        0      1      1      0      0      1
  CMTM1 WILD-TYPE     17     31     12     32     16      6
D433V10, multiclass
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             0              32
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(434) Variable = L1CAM MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1CAM MUTATED        0      2      3      1
  L1CAM WILD-TYPE     19     51     27     23
D434V1, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1CAM MUTATED        1      1      2      2
  L1CAM WILD-TYPE     34     29     32     24
D434V2, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  L1CAM MUTATED        0      3      1      0      1
  L1CAM WILD-TYPE     29     15     12      9     12
D434V3, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             0              29
  CLUS_2             3              15
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  L1CAM MUTATED        2      2      0      0      1
  L1CAM WILD-TYPE     30     16     12     10      9
D434V4, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             2              30
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  L1CAM MUTATED        2      0      2      1      1
  L1CAM WILD-TYPE     24     20     26     24     19
D434V5, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        1      4      1
  L1CAM WILD-TYPE     47     49     17
D434V6, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1              47
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  L1CAM MUTATED        1      3      1      1      0
  L1CAM WILD-TYPE     36     28     16     20     13
D434V7, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1CAM MUTATED        4      1      1
  L1CAM WILD-TYPE     67     26     20
D434V8, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  L1CAM MUTATED        1      1      2      0      0      2      0
  L1CAM WILD-TYPE     17      7      8      8     36     23     12
D434V9, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  L1CAM MUTATED        1      3      0      1      1      0
  L1CAM WILD-TYPE     16     29     13     31     15      7
D434V10, multiclass
        clus
vv       L1CAM MUTATED L1CAM WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(435) Variable = MMP14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP14 MUTATED        0      1      1      2
  MMP14 WILD-TYPE     19     52     29     22
D435V1, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP14 MUTATED        2      0      1      1
  MMP14 WILD-TYPE     33     30     33     25
D435V2, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP14 MUTATED        1      0      0      2      0
  MMP14 WILD-TYPE     28     18     13      7     13
D435V3, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP14 MUTATED        2      0      0      1      0
  MMP14 WILD-TYPE     30     18     12      9     10
D435V4, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP14 MUTATED        1      0      0      2      1
  MMP14 WILD-TYPE     25     20     28     23     19
D435V5, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP14 MUTATED        3      0      1
  MMP14 WILD-TYPE     45     53     17
D435V6, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             0              53
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP14 MUTATED        1      0      1      1      1
  MMP14 WILD-TYPE     36     31     16     20     12
D435V7, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP14 MUTATED        2      1      1
  MMP14 WILD-TYPE     69     26     20
D435V8, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP14 MUTATED        0      0      1      1      2      0      0
  MMP14 WILD-TYPE     18      8      9      7     34     25     12
D435V9, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP14 MUTATED        1      0      0      2      1      0
  MMP14 WILD-TYPE     16     32     13     30     15      7
D435V10, multiclass
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(436) Variable = CENPF MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED        1      1      3      0
  CENPF WILD-TYPE     18     52     27     24
D436V1, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED        2      1      1      1
  CENPF WILD-TYPE     33     29     33     25
D436V2, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CENPF MUTATED        1      0      0      1      0
  CENPF WILD-TYPE     28     18     13      8     13
D436V3, multiclass
[1] "Remove cluster labels:" "CENPF MUTATED"         
clus
  CENPF MUTATED CENPF WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CENPF MUTATED        2      0      0      0      0
  CENPF WILD-TYPE     30     18     12     10     10
D436V4, multiclass
[1] "Remove cluster labels:" "CENPF MUTATED"         
clus
  CENPF MUTATED CENPF WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" "CENPF WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CENPF MUTATED        1      0      1      2      1
  CENPF WILD-TYPE     25     20     27     23     19
D436V5, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPF MUTATED        2      3      0
  CENPF WILD-TYPE     46     50     18
D436V6, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CENPF MUTATED        1      1      0      3      0
  CENPF WILD-TYPE     36     30     17     18     13
D436V7, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPF MUTATED        4      1      0
  CENPF WILD-TYPE     67     26     21
D436V8, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CENPF MUTATED        1      1      1      1      0      0      0
  CENPF WILD-TYPE     17      7      9      7     36     25     12
D436V9, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CENPF MUTATED        1      0      1      2      0      0
  CENPF WILD-TYPE     16     32     12     30     16      7
D436V10, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(437) Variable = AMAC1L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMAC1L2 MUTATED        1      1      2      2
  AMAC1L2 WILD-TYPE     18     52     28     22
D437V1, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMAC1L2 MUTATED        2      0      0      4
  AMAC1L2 WILD-TYPE     33     30     34     22
D437V2, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               0                34
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1L2 MUTATED        2      0      0      0      2
  AMAC1L2 WILD-TYPE     27     18     13      9     11
D437V3, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               0                 9
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1L2 MUTATED        3      0      0      0      1
  AMAC1L2 WILD-TYPE     29     18     12     10      9
D437V4, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1L2 MUTATED        2      0      0      0      4
  AMAC1L2 WILD-TYPE     24     20     28     25     16
D437V5, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               0                25
  CLUS_5               4                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AMAC1L2 MUTATED        0      3      3
  AMAC1L2 WILD-TYPE     48     50     15
D437V6, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               0                48
  CLUS_2               3                50
  CLUS_3               3                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1L2 MUTATED        1      4      0      0      1
  AMAC1L2 WILD-TYPE     36     27     17     21     12
D437V7, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               4                27
  CLUS_3               0                17
  CLUS_4               0                21
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AMAC1L2 MUTATED        4      0      2
  AMAC1L2 WILD-TYPE     67     27     19
D437V8, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               0                27
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMAC1L2 MUTATED        0      1      0      2      1      1      1
  AMAC1L2 WILD-TYPE     18      7     10      6     35     24     11
D437V9, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               2                 6
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMAC1L2 MUTATED        1      1      2      0      2      0
  AMAC1L2 WILD-TYPE     16     31     11     32     14      7
D437V10, multiclass
        clus
vv       AMAC1L2 MUTATED AMAC1L2 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               2                11
  CLUS_4               0                32
  CLUS_5               2                14
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(438) Variable = PPARGC1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        0      2      2      1
  PPARGC1B WILD-TYPE     19     51     28     23
D438V1, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 51
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        1      3      0      1
  PPARGC1B WILD-TYPE     34     27     34     25
D438V2, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                3                 27
  CLUS_3                0                 34
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        1      0      0      1      0
  PPARGC1B WILD-TYPE     28     18     13      8     13
D438V3, multiclass
[1] "Remove cluster labels:" "PPARGC1B MUTATED"      
clus
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7925 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        1      0      0      1      0
  PPARGC1B WILD-TYPE     31     18     12      9     10
D438V4, multiclass
[1] "Remove cluster labels:" "PPARGC1B MUTATED"      
clus
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7925 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        0      1      0      3      1
  PPARGC1B WILD-TYPE     26     19     28     22     19
D438V5, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 19
  CLUS_3                0                 28
  CLUS_4                3                 22
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        3      0      2
  PPARGC1B WILD-TYPE     45     53     16
D438V6, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                0                 53
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        0      0      1      2      2
  PPARGC1B WILD-TYPE     37     31     16     19     11
D438V7, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                0                 31
  CLUS_3                1                 16
  CLUS_4                2                 19
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        1      3      1
  PPARGC1B WILD-TYPE     70     24     20
D438V8, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                3                 24
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPARGC1B MUTATED        0      0      2      1      1      0      1
  PPARGC1B WILD-TYPE     18      8      8      7     35     25     11
D438V9, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                2                  8
  CLUS_4                1                  7
  CLUS_5                1                 35
  CLUS_6                0                 25
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPARGC1B MUTATED        0      0      0      3      1      1
  PPARGC1B WILD-TYPE     17     32     13     29     15      6
D438V10, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                0                 32
  CLUS_3                0                 13
  CLUS_4                3                 29
  CLUS_5                1                 15
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(439) Variable = ERBB2IP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED        1      2      2      0
  ERBB2IP WILD-TYPE     18     51     28     24
D439V1, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED        2      2      1      0
  ERBB2IP WILD-TYPE     33     28     33     26
D439V2, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2IP MUTATED        0      0      1      1      0
  ERBB2IP WILD-TYPE     29     18     12      8     13
D439V3, multiclass
[1] "Remove cluster labels:" "ERBB2IP MUTATED"       
clus
  ERBB2IP MUTATED ERBB2IP WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-S4-A8RO        TCGA-US-A776 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2IP MUTATED        1      0      0      0      1
  ERBB2IP WILD-TYPE     31     18     12     10      9
D439V4, multiclass
[1] "Remove cluster labels:" "ERBB2IP MUTATED"       
clus
  ERBB2IP MUTATED ERBB2IP WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-S4-A8RO        TCGA-US-A776 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" "ERBB2IP WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2IP MUTATED        1      2      1      1      0
  ERBB2IP WILD-TYPE     25     18     27     24     20
D439V5, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                18
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ERBB2IP MUTATED        1      2      2
  ERBB2IP WILD-TYPE     47     51     16
D439V6, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               1                47
  CLUS_2               2                51
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2IP MUTATED        2      0      0      2      1
  ERBB2IP WILD-TYPE     35     31     17     19     12
D439V7, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ERBB2IP MUTATED        3      0      2
  ERBB2IP WILD-TYPE     68     27     19
D439V8, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERBB2IP MUTATED        0      0      1      0      2      1      1
  ERBB2IP WILD-TYPE     18      8      9      8     34     24     11
D439V9, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB2IP MUTATED        0      2      0      1      1      1
  ERBB2IP WILD-TYPE     17     30     13     31     15      6
D439V10, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               1                15
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(440) Variable = PRF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRF1 MUTATED        2      2      2      0
  PRF1 WILD-TYPE     17     51     28     24
D440V1, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRF1 MUTATED        3      1      0      2
  PRF1 WILD-TYPE     32     29     34     24
D440V2, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRF1 MUTATED        1      1      1      1      1
  PRF1 WILD-TYPE     28     17     12      8     12
D440V3, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRF1 MUTATED        3      1      1      0      0
  PRF1 WILD-TYPE     29     17     11     10     10
D440V4, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRF1 MUTATED        0      0      1      1      2
  PRF1 WILD-TYPE     26     20     27     24     18
D440V5, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRF1 MUTATED        1      2      1
  PRF1 WILD-TYPE     47     51     17
D440V6, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRF1 MUTATED        1      2      0      1      0
  PRF1 WILD-TYPE     36     29     17     20     13
D440V7, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRF1 MUTATED        4      0      0
  PRF1 WILD-TYPE     67     27     21
D440V8, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRF1 MUTATED        0      0      1      1      1      0      1
  PRF1 WILD-TYPE     18      8      9      7     35     25     11
D440V9, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRF1 MUTATED        1      1      1      1      0      0
  PRF1 WILD-TYPE     16     31     12     31     16      7
D440V10, multiclass
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(441) Variable = WNT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT2 MUTATED        0      3      1      2
  WNT2 WILD-TYPE     19     50     29     22
D441V1, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            1             29
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT2 MUTATED        2      1      2      1
  WNT2 WILD-TYPE     33     29     32     25
D441V2, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT2 MUTATED        1      0      0      2      1
  WNT2 WILD-TYPE     28     18     13      7     12
D441V3, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT2 MUTATED        2      0      0      1      1
  WNT2 WILD-TYPE     30     18     12      9      9
D441V4, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT2 MUTATED        0      1      3      1      1
  WNT2 WILD-TYPE     26     19     25     24     19
D441V5, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            3             25
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        2      3      1
  WNT2 WILD-TYPE     46     50     17
D441V6, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT2 MUTATED        1      1      0      3      1
  WNT2 WILD-TYPE     36     30     17     18     12
D441V7, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            3             18
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        4      0      2
  WNT2 WILD-TYPE     67     27     19
D441V8, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            0             27
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WNT2 MUTATED        0      0      1      0      2      1      2
  WNT2 WILD-TYPE     18      8      9      8     34     24     10
D441V9, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT2 MUTATED        0      3      0      2      0      1
  WNT2 WILD-TYPE     17     29     13     30     16      6
D441V10, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(442) Variable = R3HDM1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        1      1      2      1
  R3HDM1 WILD-TYPE     18     52     28     23
D442V1, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        2      0      3      0
  R3HDM1 WILD-TYPE     33     30     31     26
D442V2, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              3               31
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM1 MUTATED        0      3      0      1      0
  R3HDM1 WILD-TYPE     29     15     13      8     13
D442V3, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              3               15
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM1 MUTATED        1      3      0      0      0
  R3HDM1 WILD-TYPE     31     15     12     10     10
D442V4, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              3               15
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM1 MUTATED        2      0      2      1      0
  R3HDM1 WILD-TYPE     24     20     26     24     20
D442V5, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        1      4      0
  R3HDM1 WILD-TYPE     47     49     18
D442V6, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              4               49
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM1 MUTATED        2      1      0      2      0
  R3HDM1 WILD-TYPE     35     30     17     19     13
D442V7, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        5      0      0
  R3HDM1 WILD-TYPE     66     27     21
D442V8, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  R3HDM1 MUTATED        0      0      1      0      2      1      0
  R3HDM1 WILD-TYPE     18      8      9      8     34     24     12
D442V9, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  R3HDM1 MUTATED        0      3      0      1      0      0
  R3HDM1 WILD-TYPE     17     29     13     31     16      7
D442V10, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(443) Variable = THRA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRA MUTATED        0      4      0      0
  THRA WILD-TYPE     19     49     30     24
D443V1, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            0             19
  CLUS_2            4             49
  CLUS_3            0             30
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRA MUTATED        3      0      1      0
  THRA WILD-TYPE     32     30     33     26
D443V2, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THRA MUTATED        2      0      1      0      0
  THRA WILD-TYPE     27     18     12      9     13
D443V3, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            0              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THRA MUTATED        2      0      1      0      0
  THRA WILD-TYPE     30     18     11     10     10
D443V4, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THRA MUTATED        1      1      1      1      0
  THRA WILD-TYPE     25     19     27     24     20
D443V5, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  THRA MUTATED        2      2      0
  THRA WILD-TYPE     46     51     18
D443V6, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THRA MUTATED        1      1      1      0      1
  THRA WILD-TYPE     36     30     16     21     12
D443V7, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            0             21
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  THRA MUTATED        2      1      1
  THRA WILD-TYPE     69     26     20
D443V8, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THRA MUTATED        1      0      0      0      1      2      0
  THRA WILD-TYPE     17      8     10      8     35     23     12
D443V9, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THRA MUTATED        0      2      0      1      1      0
  THRA WILD-TYPE     17     30     13     31     15      7
D443V10, multiclass
        clus
vv       THRA MUTATED THRA WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(444) Variable = MGAT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT2 MUTATED        1      1      0      2
  MGAT2 WILD-TYPE     18     52     30     22
D444V1, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             0              30
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT2 MUTATED        1      1      2      0
  MGAT2 WILD-TYPE     34     29     32     26
D444V2, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGAT2 MUTATED        1      0      0      0      0
  MGAT2 WILD-TYPE     28     18     13      9     13
D444V3, multiclass
[1] "Remove cluster labels:" "MGAT2 MUTATED"         
clus
  MGAT2 MUTATED MGAT2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"MGAT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGAT2 MUTATED        1      0      0      0      0
  MGAT2 WILD-TYPE     31     18     12     10     10
D444V4, multiclass
[1] "Remove cluster labels:" "MGAT2 MUTATED"         
clus
  MGAT2 MUTATED MGAT2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" "MGAT2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"MGAT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGAT2 MUTATED        1      1      1      1      0
  MGAT2 WILD-TYPE     25     19     27     24     20
D444V5, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGAT2 MUTATED        2      1      1
  MGAT2 WILD-TYPE     46     52     17
D444V6, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGAT2 MUTATED        1      0      1      2      0
  MGAT2 WILD-TYPE     36     31     16     19     13
D444V7, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGAT2 MUTATED        2      1      1
  MGAT2 WILD-TYPE     69     26     20
D444V8, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MGAT2 MUTATED        2      0      0      0      1      0      1
  MGAT2 WILD-TYPE     16      8     10      8     35     25     11
D444V9, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MGAT2 MUTATED        0      1      0      2      0      1
  MGAT2 WILD-TYPE     17     31     13     30     16      6
D444V10, multiclass
        clus
vv       MGAT2 MUTATED MGAT2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(445) Variable = HMX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMX2 MUTATED        0      1      2      1
  HMX2 WILD-TYPE     19     52     28     23
D445V1, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMX2 MUTATED        2      1      0      1
  HMX2 WILD-TYPE     33     29     34     25
D445V2, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMX2 MUTATED        1      1      0      1      0
  HMX2 WILD-TYPE     28     17     13      8     13
D445V3, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMX2 MUTATED        2      1      0      0      0
  HMX2 WILD-TYPE     30     17     12     10     10
D445V4, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMX2 MUTATED        1      0      0      2      1
  HMX2 WILD-TYPE     25     20     28     23     19
D445V5, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HMX2 MUTATED        2      1      1
  HMX2 WILD-TYPE     46     52     17
D445V6, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMX2 MUTATED        0      2      0      1      1
  HMX2 WILD-TYPE     37     29     17     20     12
D445V7, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HMX2 MUTATED        2      1      1
  HMX2 WILD-TYPE     69     26     20
D445V8, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HMX2 MUTATED        0      1      1      2      0      0      0
  HMX2 WILD-TYPE     18      7      9      6     36     25     12
D445V9, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            2              6
  CLUS_5            0             36
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HMX2 MUTATED        0      0      1      2      1      0
  HMX2 WILD-TYPE     17     32     12     30     15      7
D445V10, multiclass
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(446) Variable = KRTAP4-8 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP4-8 MUTATED        0      1      1      3
  KRTAP4-8 WILD-TYPE     19     52     29     21
D446V1, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                1                 52
  CLUS_3                1                 29
  CLUS_4                3                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP4-8 MUTATED        2      0      3      0
  KRTAP4-8 WILD-TYPE     33     30     31     26
D446V2, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                0                 30
  CLUS_3                3                 31
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP4-8 MUTATED        3      0      0      1      0
  KRTAP4-8 WILD-TYPE     26     18     13      8     13
D446V3, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                0                 18
  CLUS_3                0                 13
  CLUS_4                1                  8
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP4-8 MUTATED        4      0      0      0      0
  KRTAP4-8 WILD-TYPE     28     18     12     10     10
D446V4, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                4                 28
  CLUS_2                0                 18
  CLUS_3                0                 12
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP4-8 MUTATED        1      1      2      1      0
  KRTAP4-8 WILD-TYPE     25     19     26     24     20
D446V5, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                2                 26
  CLUS_4                1                 24
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP4-8 MUTATED        2      3      0
  KRTAP4-8 WILD-TYPE     46     50     18
D446V6, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                3                 50
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP4-8 MUTATED        3      0      0      2      0
  KRTAP4-8 WILD-TYPE     34     31     17     19     13
D446V7, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                0                 31
  CLUS_3                0                 17
  CLUS_4                2                 19
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP4-8 MUTATED        5      0      0
  KRTAP4-8 WILD-TYPE     66     27     21
D446V8, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                5                 66
  CLUS_2                0                 27
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP4-8 MUTATED        0      0      1      0      3      1      0
  KRTAP4-8 WILD-TYPE     18      8      9      8     33     24     12
D446V9, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                3                 33
  CLUS_6                1                 24
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP4-8 MUTATED        1      2      1      1      0      0
  KRTAP4-8 WILD-TYPE     16     30     12     31     16      7
D446V10, multiclass
        clus
vv       KRTAP4-8 MUTATED KRTAP4-8 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                2                 30
  CLUS_3                1                 12
  CLUS_4                1                 31
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(447) Variable = TBC1D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D1 MUTATED        0      3      0      1
  TBC1D1 WILD-TYPE     19     50     30     23
D447V1, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              0               30
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D1 MUTATED        0      1      2      1
  TBC1D1 WILD-TYPE     35     29     32     25
D447V2, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D1 MUTATED        2      0      1      0      0
  TBC1D1 WILD-TYPE     27     18     12      9     13
D447V3, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D1 MUTATED        2      0      0      0      1
  TBC1D1 WILD-TYPE     30     18     12     10      9
D447V4, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D1 MUTATED        1      2      1      0      0
  TBC1D1 WILD-TYPE     25     18     27     25     20
D447V5, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              0               25
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TBC1D1 MUTATED        1      1      2
  TBC1D1 WILD-TYPE     47     52     16
D447V6, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              1               52
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D1 MUTATED        2      0      0      1      1
  TBC1D1 WILD-TYPE     35     31     17     20     12
D447V7, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TBC1D1 MUTATED        2      0      2
  TBC1D1 WILD-TYPE     69     27     19
D447V8, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TBC1D1 MUTATED        0      0      0      0      3      1      0
  TBC1D1 WILD-TYPE     18      8     10      8     33     24     12
D447V9, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D1 MUTATED        1      1      0      0      1      1
  TBC1D1 WILD-TYPE     16     31     13     32     15      6
D447V10, multiclass
        clus
vv       TBC1D1 MUTATED TBC1D1 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              0               32
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(448) Variable = MTR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTR MUTATED        0      2      3      2
  MTR WILD-TYPE     19     51     27     22
D448V1, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           0            19
  CLUS_2           2            51
  CLUS_3           3            27
  CLUS_4           2            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTR MUTATED        2      1      2      2
  MTR WILD-TYPE     33     29     32     24
D448V2, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           2            33
  CLUS_2           1            29
  CLUS_3           2            32
  CLUS_4           2            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTR MUTATED        1      0      0      3      3
  MTR WILD-TYPE     28     18     13      6     10
D448V3, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           1            28
  CLUS_2           0            18
  CLUS_3           0            13
  CLUS_4           3             6
  CLUS_5           3            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTR MUTATED        3      1      0      1      2
  MTR WILD-TYPE     29     17     12      9      8
D448V4, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           3            29
  CLUS_2           1            17
  CLUS_3           0            12
  CLUS_4           1             9
  CLUS_5           2             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTR MUTATED        0      2      1      2      2
  MTR WILD-TYPE     26     18     27     23     18
D448V5, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           0            26
  CLUS_2           2            18
  CLUS_3           1            27
  CLUS_4           2            23
  CLUS_5           2            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MTR MUTATED        5      2      0
  MTR WILD-TYPE     43     51     18
D448V6, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           5            43
  CLUS_2           2            51
  CLUS_3           0            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTR MUTATED        1      2      1      2      1
  MTR WILD-TYPE     36     29     16     19     12
D448V7, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           1            36
  CLUS_2           2            29
  CLUS_3           1            16
  CLUS_4           2            19
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MTR MUTATED        6      1      0
  MTR WILD-TYPE     65     26     21
D448V8, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           6            65
  CLUS_2           1            26
  CLUS_3           0            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTR MUTATED        1      0      1      1      2      2      0
  MTR WILD-TYPE     17      8      9      7     34     23     12
D448V9, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           1            17
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           1             7
  CLUS_5           2            34
  CLUS_6           2            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTR MUTATED        0      2      1      3      1      0
  MTR WILD-TYPE     17     30     12     29     15      7
D448V10, multiclass
        clus
vv       MTR MUTATED MTR WILD-TYPE
  CLUS_1           0            17
  CLUS_2           2            30
  CLUS_3           1            12
  CLUS_4           3            29
  CLUS_5           1            15
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(449) Variable = CCDC103 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC103 MUTATED        0      1      1      1
  CCDC103 WILD-TYPE     19     52     29     23
D449V1, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC103 MUTATED        1      1      1      0
  CCDC103 WILD-TYPE     34     29     33     26
D449V2, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC103 MUTATED        1      1      0      0      0
  CCDC103 WILD-TYPE     28     17     13      9     13
D449V3, multiclass
[1] "Remove cluster labels:" "CCDC103 MUTATED"       
clus
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-A5SO        TCGA-IB-A5SP 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC103 MUTATED        1      1      0      0      0
  CCDC103 WILD-TYPE     31     17     12     10     10
D449V4, multiclass
[1] "Remove cluster labels:" "CCDC103 MUTATED"       
clus
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-A5SO        TCGA-IB-A5SP 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC103 MUTATED        0      0      1      2      0
  CCDC103 WILD-TYPE     26     20     27     23     20
D449V5, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC103 MUTATED        2      1      0
  CCDC103 WILD-TYPE     46     52     18
D449V6, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC103 MUTATED        1      1      0      1      0
  CCDC103 WILD-TYPE     36     30     17     20     13
D449V7, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC103 MUTATED        2      1      0
  CCDC103 WILD-TYPE     69     26     21
D449V8, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC103 MUTATED        1      1      0      1      0      0      0
  CCDC103 WILD-TYPE     17      7     10      7     36     25     12
D449V9, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               1                 7
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC103 MUTATED        1      0      0      2      0      0
  CCDC103 WILD-TYPE     16     32     13     30     16      7
D449V10, multiclass
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(450) Variable = RBBP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP8 MUTATED        0      2      2      1
  RBBP8 WILD-TYPE     19     51     28     23
D450V1, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP8 MUTATED        2      2      1      0
  RBBP8 WILD-TYPE     33     28     33     26
D450V2, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBBP8 MUTATED        2      0      0      2      0
  RBBP8 WILD-TYPE     27     18     13      7     13
D450V3, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBBP8 MUTATED        3      0      0      1      0
  RBBP8 WILD-TYPE     29     18     12      9     10
D450V4, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBBP8 MUTATED        0      1      2      1      0
  RBBP8 WILD-TYPE     26     19     26     24     20
D450V5, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP8 MUTATED        2      1      1
  RBBP8 WILD-TYPE     46     52     17
D450V6, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBBP8 MUTATED        2      1      0      1      0
  RBBP8 WILD-TYPE     35     30     17     20     13
D450V7, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP8 MUTATED        3      0      1
  RBBP8 WILD-TYPE     68     27     20
D450V8, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBBP8 MUTATED        1      1      1      0      0      1      0
  RBBP8 WILD-TYPE     17      7      9      8     36     24     12
D450V9, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBBP8 MUTATED        1      1      0      1      1      0
  RBBP8 WILD-TYPE     16     31     13     31     15      7
D450V10, multiclass
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(451) Variable = FAM102A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM102A MUTATED        1      0      2      1
  FAM102A WILD-TYPE     18     53     28     23
D451V1, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               1                18
  CLUS_2               0                53
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM102A MUTATED        2      1      1      0
  FAM102A WILD-TYPE     33     29     33     26
D451V2, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM102A MUTATED        1      2      0      1      0
  FAM102A WILD-TYPE     28     16     13      8     13
D451V3, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               1                28
  CLUS_2               2                16
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM102A MUTATED        3      1      0      0      0
  FAM102A WILD-TYPE     29     17     12     10     10
D451V4, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM102A MUTATED        2      0      0      2      0
  FAM102A WILD-TYPE     24     20     28     23     20
D451V5, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM102A MUTATED        3      1      0
  FAM102A WILD-TYPE     45     52     18
D451V6, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM102A MUTATED        2      0      1      1      0
  FAM102A WILD-TYPE     35     31     16     20     13
D451V7, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM102A MUTATED        3      1      0
  FAM102A WILD-TYPE     68     26     21
D451V8, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM102A MUTATED        1      1      1      0      1      0      0
  FAM102A WILD-TYPE     17      7      9      8     35     25     12
D451V9, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM102A MUTATED        1      1      0      2      0      0
  FAM102A WILD-TYPE     16     31     13     30     16      7
D451V10, multiclass
        clus
vv       FAM102A MUTATED FAM102A WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(452) Variable = FAM18A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM18A MUTATED        0      2      1      0
  FAM18A WILD-TYPE     19     51     29     24
D452V1, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM18A MUTATED        1      0      1      1
  FAM18A WILD-TYPE     34     30     33     25
D452V2, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM18A MUTATED        1      0      0      0      1
  FAM18A WILD-TYPE     28     18     13      9     12
D452V3, multiclass
[1] "Remove cluster labels:" "FAM18A MUTATED"        
clus
  FAM18A MUTATED FAM18A WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-FB-A5VM       TCGA-FB-A78T 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-AA2A 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM18A MUTATED        1      0      1      0      0
  FAM18A WILD-TYPE     31     18     11     10     10
D452V4, multiclass
[1] "Remove cluster labels:" "FAM18A MUTATED"        
clus
  FAM18A MUTATED FAM18A WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-FB-A5VM       TCGA-FB-A78T 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-AA2A 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" "FAM18A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM18A MUTATED        0      0      2      0      1
  FAM18A WILD-TYPE     26     20     26     25     19
D452V5, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              0               25
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM18A MUTATED        0      3      0
  FAM18A WILD-TYPE     48     50     18
D452V6, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              0               48
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM18A MUTATED        2      1      0      0      0
  FAM18A WILD-TYPE     35     30     17     21     13
D452V7, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM18A MUTATED        3      0      0
  FAM18A WILD-TYPE     68     27     21
D452V8, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM18A MUTATED        0      0      0      1      2      0      0
  FAM18A WILD-TYPE     18      8     10      7     34     25     12
D452V9, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM18A MUTATED        0      2      1      0      0      0
  FAM18A WILD-TYPE     17     30     12     32     16      7
D452V10, multiclass
        clus
vv       FAM18A MUTATED FAM18A WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              0               32
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(453) Variable = AMAC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMAC1 MUTATED        1      1      3      2
  AMAC1 WILD-TYPE     18     52     27     22
D453V1, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMAC1 MUTATED        2      0      2      3
  AMAC1 WILD-TYPE     33     30     32     23
D453V2, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1 MUTATED        1      1      0      1      0
  AMAC1 WILD-TYPE     28     17     13      8     13
D453V3, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1 MUTATED        2      1      0      0      0
  AMAC1 WILD-TYPE     30     17     12     10     10
D453V4, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1 MUTATED        1      1      2      2      1
  AMAC1 WILD-TYPE     25     19     26     23     19
D453V5, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMAC1 MUTATED        2      2      3
  AMAC1 WILD-TYPE     46     51     15
D453V6, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMAC1 MUTATED        2      2      0      1      2
  AMAC1 WILD-TYPE     35     29     17     20     11
D453V7, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMAC1 MUTATED        3      1      3
  AMAC1 WILD-TYPE     68     26     18
D453V8, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMAC1 MUTATED        0      1      2      1      1      1      1
  AMAC1 WILD-TYPE     18      7      8      7     35     24     11
D453V9, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMAC1 MUTATED        1      2      0      2      2      0
  AMAC1 WILD-TYPE     16     30     13     30     14      7
D453V10, multiclass
        clus
vv       AMAC1 MUTATED AMAC1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(454) Variable = NFATC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC2 MUTATED        2      1      3      0
  NFATC2 WILD-TYPE     17     52     27     24
D454V1, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              1               52
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC2 MUTATED        4      0      0      2
  NFATC2 WILD-TYPE     31     30     34     24
D454V2, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFATC2 MUTATED        2      0      0      2      0
  NFATC2 WILD-TYPE     27     18     13      7     13
D454V3, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFATC2 MUTATED        3      0      0      1      0
  NFATC2 WILD-TYPE     29     18     12      9     10
D454V4, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFATC2 MUTATED        0      0      1      2      3
  NFATC2 WILD-TYPE     26     20     27     23     17
D454V5, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFATC2 MUTATED        2      2      2
  NFATC2 WILD-TYPE     46     51     16
D454V6, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFATC2 MUTATED        1      4      0      1      0
  NFATC2 WILD-TYPE     36     27     17     20     13
D454V7, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              4               27
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFATC2 MUTATED        3      1      2
  NFATC2 WILD-TYPE     68     26     19
D454V8, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFATC2 MUTATED        0      0      1      2      1      2      0
  NFATC2 WILD-TYPE     18      8      9      6     35     23     12
D454V9, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              2                6
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFATC2 MUTATED        0      0      2      2      2      0
  NFATC2 WILD-TYPE     17     32     11     30     14      7
D454V10, multiclass
        clus
vv       NFATC2 MUTATED NFATC2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              2               11
  CLUS_4              2               30
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(455) Variable = RNF128 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        1      0      3      1
  RNF128 WILD-TYPE     18     53     27     23
D455V1, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              0               53
  CLUS_3              3               27
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        1      1      1      2
  RNF128 WILD-TYPE     34     29     33     24
D455V2, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        0      0      0      1      0
  RNF128 WILD-TYPE     29     18     13      8     13
D455V3, multiclass
[1] "Remove cluster labels:" "RNF128 MUTATED"        
clus
  RNF128 MUTATED RNF128 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-Z5-AAPL 
"RNF128 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        1      0      0      0      0
  RNF128 WILD-TYPE     31     18     12     10     10
D455V4, multiclass
[1] "Remove cluster labels:" "RNF128 MUTATED"        
clus
  RNF128 MUTATED RNF128 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" "RNF128 WILD-TYPE" 
      TCGA-Z5-AAPL 
"RNF128 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        0      1      1      2      1
  RNF128 WILD-TYPE     26     19     27     23     19
D455V5, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        2      1      2
  RNF128 WILD-TYPE     46     52     16
D455V6, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        0      1      0      3      1
  RNF128 WILD-TYPE     37     30     17     18     12
D455V7, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              3               18
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        2      1      2
  RNF128 WILD-TYPE     69     26     19
D455V8, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF128 MUTATED        0      0      2      1      1      0      1
  RNF128 WILD-TYPE     18      8      8      7     35     25     11
D455V9, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF128 MUTATED        0      1      0      2      1      1
  RNF128 WILD-TYPE     17     31     13     30     15      6
D455V10, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(456) Variable = PCLO MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCLO MUTATED        2      0      3      3
  PCLO WILD-TYPE     17     53     27     21
D456V1, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            2             17
  CLUS_2            0             53
  CLUS_3            3             27
  CLUS_4            3             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCLO MUTATED        1      1      2      3
  PCLO WILD-TYPE     34     29     32     23
D456V2, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            3             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED        1      2      0      1      1
  PCLO WILD-TYPE     28     16     13      8     12
D456V3, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            1             28
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED        2      2      1      0      0
  PCLO WILD-TYPE     30     16     11     10     10
D456V4, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            2             30
  CLUS_2            2             16
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED        0      2      1      1      3
  PCLO WILD-TYPE     26     18     27     24     17
D456V5, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             18
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCLO MUTATED        2      4      1
  PCLO WILD-TYPE     46     49     17
D456V6, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            2             46
  CLUS_2            4             49
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED        1      3      1      1      1
  PCLO WILD-TYPE     36     28     16     20     12
D456V7, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            1             36
  CLUS_2            3             28
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCLO MUTATED        5      2      0
  PCLO WILD-TYPE     66     25     21
D456V8, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            5             66
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCLO MUTATED        1      0      1      2      0      2      1
  PCLO WILD-TYPE     17      8      9      6     36     23     11
D456V9, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            2              6
  CLUS_5            0             36
  CLUS_6            2             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCLO MUTATED        0      1      3      2      0      1
  PCLO WILD-TYPE     17     31     10     30     16      6
D456V10, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            3             10
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(457) Variable = NCOA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        0      0      2      1
  NCOA7 WILD-TYPE     19     53     28     23
D457V1, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        0      1      1      1
  NCOA7 WILD-TYPE     35     29     33     25
D457V2, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        0      2      1      0      0
  NCOA7 WILD-TYPE     29     16     12      9     13
D457V3, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             2              16
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        0      2      0      0      1
  NCOA7 WILD-TYPE     32     16     12     10      9
D457V4, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             0              32
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        0      0      1      1      1
  NCOA7 WILD-TYPE     26     20     27     24     19
D457V5, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED        1      2      0
  NCOA7 WILD-TYPE     47     51     18
D457V6, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        1      2      0      0      0
  NCOA7 WILD-TYPE     36     29     17     21     13
D457V7, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED        2      1      0
  NCOA7 WILD-TYPE     69     26     21
D457V8, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOA7 MUTATED        0      0      0      1      1      1      0
  NCOA7 WILD-TYPE     18      8     10      7     35     24     12
D457V9, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCOA7 MUTATED        0      1      0      1      1      0
  NCOA7 WILD-TYPE     17     31     13     31     15      7
D457V10, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(458) Variable = POM121 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POM121 MUTATED        1      2      1      1
  POM121 WILD-TYPE     18     51     29     23
D458V1, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POM121 MUTATED        1      1      2      1
  POM121 WILD-TYPE     34     29     32     25
D458V2, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POM121 MUTATED        1      2      0      1      0
  POM121 WILD-TYPE     28     16     13      8     13
D458V3, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              2               16
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POM121 MUTATED        2      2      0      0      0
  POM121 WILD-TYPE     30     16     12     10     10
D458V4, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              2               16
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POM121 MUTATED        2      1      0      2      0
  POM121 WILD-TYPE     24     19     28     23     20
D458V5, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        3      1      1
  POM121 WILD-TYPE     45     52     17
D458V6, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POM121 MUTATED        1      0      1      2      1
  POM121 WILD-TYPE     36     31     16     19     12
D458V7, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POM121 MUTATED        3      1      1
  POM121 WILD-TYPE     68     26     20
D458V8, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POM121 MUTATED        1      0      2      0      0      2      0
  POM121 WILD-TYPE     17      8      8      8     36     23     12
D458V9, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POM121 MUTATED        1      1      0      2      1      0
  POM121 WILD-TYPE     16     31     13     30     15      7
D458V10, multiclass
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(459) Variable = HIST1H2BK MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BK MUTATED        0      2      0      2
  HIST1H2BK WILD-TYPE     19     51     30     22
D459V1, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 0                  19
  CLUS_2                 2                  51
  CLUS_3                 0                  30
  CLUS_4                 2                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BK MUTATED        2      0      1      1
  HIST1H2BK WILD-TYPE     33     30     33     25
D459V2, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 2                  33
  CLUS_2                 0                  30
  CLUS_3                 1                  33
  CLUS_4                 1                  25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BK MUTATED        1      1      0      1      0
  HIST1H2BK WILD-TYPE     28     17     13      8     13
D459V3, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  28
  CLUS_2                 1                  17
  CLUS_3                 0                  13
  CLUS_4                 1                   8
  CLUS_5                 0                  13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BK MUTATED        1      1      0      1      0
  HIST1H2BK WILD-TYPE     31     17     12      9     10
D459V4, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  31
  CLUS_2                 1                  17
  CLUS_3                 0                  12
  CLUS_4                 1                   9
  CLUS_5                 0                  10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BK MUTATED        2      0      1      0      1
  HIST1H2BK WILD-TYPE     24     20     27     25     19
D459V5, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 2                  24
  CLUS_2                 0                  20
  CLUS_3                 1                  27
  CLUS_4                 0                  25
  CLUS_5                 1                  19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        2      1      1
  HIST1H2BK WILD-TYPE     46     52     17
D459V6, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 2                  46
  CLUS_2                 1                  52
  CLUS_3                 1                  17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BK MUTATED        2      0      0      1      1
  HIST1H2BK WILD-TYPE     35     31     17     20     12
D459V7, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 2                  35
  CLUS_2                 0                  31
  CLUS_3                 0                  17
  CLUS_4                 1                  20
  CLUS_5                 1                  12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BK MUTATED        2      1      1
  HIST1H2BK WILD-TYPE     69     26     20
D459V8, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 2                  69
  CLUS_2                 1                  26
  CLUS_3                 1                  20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H2BK MUTATED        1      0      0      1      1      1      0
  HIST1H2BK WILD-TYPE     17      8     10      7     35     24     12
D459V9, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 1                  17
  CLUS_2                 0                   8
  CLUS_3                 0                  10
  CLUS_4                 1                   7
  CLUS_5                 1                  35
  CLUS_6                 1                  24
  CLUS_7                 0                  12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H2BK MUTATED        0      2      0      1      1      0
  HIST1H2BK WILD-TYPE     17     30     13     31     15      7
D459V10, multiclass
        clus
vv       HIST1H2BK MUTATED HIST1H2BK WILD-TYPE
  CLUS_1                 0                  17
  CLUS_2                 2                  30
  CLUS_3                 0                  13
  CLUS_4                 1                  31
  CLUS_5                 1                  15
  CLUS_6                 0                   7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(460) Variable = ZHX3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED        1      1      3      2
  ZHX3 WILD-TYPE     18     52     27     22
D460V1, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            1             52
  CLUS_3            3             27
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED        3      3      0      1
  ZHX3 WILD-TYPE     32     27     34     25
D460V2, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            3             27
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX3 MUTATED        2      0      2      2      0
  ZHX3 WILD-TYPE     27     18     11      7     13
D460V3, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX3 MUTATED        3      0      1      1      1
  ZHX3 WILD-TYPE     29     18     11      9      9
D460V4, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX3 MUTATED        2      2      0      2      0
  ZHX3 WILD-TYPE     24     18     28     23     20
D460V5, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX3 MUTATED        3      1      2
  ZHX3 WILD-TYPE     45     52     16
D460V6, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            1             52
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX3 MUTATED        1      0      0      3      2
  ZHX3 WILD-TYPE     36     31     17     18     11
D460V7, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            3             18
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX3 MUTATED        2      2      2
  ZHX3 WILD-TYPE     69     25     19
D460V8, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             25
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZHX3 MUTATED        1      0      1      0      1      2      0
  ZHX3 WILD-TYPE     17      8      9      8     35     23     12
D460V9, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZHX3 MUTATED        0      1      0      2      2      0
  ZHX3 WILD-TYPE     17     31     13     30     14      7
D460V10, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(461) Variable = RGPD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGPD3 MUTATED        1      6      0      1
  RGPD3 WILD-TYPE     18     47     30     23
D461V1, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             6              47
  CLUS_3             0              30
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGPD3 MUTATED        2      1      5      0
  RGPD3 WILD-TYPE     33     29     29     26
D461V2, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             5              29
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD3 MUTATED        2      1      1      0      0
  RGPD3 WILD-TYPE     27     17     12      9     13
D461V3, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD3 MUTATED        1      1      1      1      0
  RGPD3 WILD-TYPE     31     17     11      9     10
D461V4, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD3 MUTATED        4      1      3      0      0
  RGPD3 WILD-TYPE     22     19     25     25     20
D461V5, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             0              25
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGPD3 MUTATED        3      4      1
  RGPD3 WILD-TYPE     45     49     17
D461V6, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             4              49
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGPD3 MUTATED        5      0      0      3      0
  RGPD3 WILD-TYPE     32     31     17     18     13
D461V7, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGPD3 MUTATED        7      0      1
  RGPD3 WILD-TYPE     64     27     20
D461V8, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RGPD3 MUTATED        0      0      1      0      5      1      1
  RGPD3 WILD-TYPE     18      8      9      8     31     24     11
D461V9, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             5              31
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGPD3 MUTATED        2      3      2      0      0      1
  RGPD3 WILD-TYPE     15     29     11     32     16      6
D461V10, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             3              29
  CLUS_3             2              11
  CLUS_4             0              32
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(462) Variable = ZNF554 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF554 MUTATED        0      1      1      1
  ZNF554 WILD-TYPE     19     52     29     23
D462V1, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF554 MUTATED        1      0      1      1
  ZNF554 WILD-TYPE     34     30     33     25
D462V2, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF554 MUTATED        2      0      0      0      0
  ZNF554 WILD-TYPE     27     18     13      9     13
D462V3, multiclass
[1] "Remove cluster labels:" "ZNF554 MUTATED"        
clus
  ZNF554 MUTATED ZNF554 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF554 MUTATED        1      0      0      1      0
  ZNF554 WILD-TYPE     31     18     12      9     10
D462V4, multiclass
[1] "Remove cluster labels:" "ZNF554 MUTATED"        
clus
  ZNF554 MUTATED ZNF554 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" "ZNF554 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF554 MUTATED        1      0      1      0      1
  ZNF554 WILD-TYPE     25     20     27     25     19
D462V5, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              0               25
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF554 MUTATED        0      2      1
  ZNF554 WILD-TYPE     48     51     17
D462V6, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              0               48
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF554 MUTATED        1      1      0      1      0
  ZNF554 WILD-TYPE     36     30     17     20     13
D462V7, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF554 MUTATED        2      0      1
  ZNF554 WILD-TYPE     69     27     20
D462V8, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF554 MUTATED        0      1      0      0      1      1      0
  ZNF554 WILD-TYPE     18      7     10      8     35     24     12
D462V9, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF554 MUTATED        0      1      1      0      1      0
  ZNF554 WILD-TYPE     17     31     12     32     15      7
D462V10, multiclass
        clus
vv       ZNF554 MUTATED ZNF554 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              0               32
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(463) Variable = RETN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RETN MUTATED        1      2      0      0
  RETN WILD-TYPE     18     51     30     24
D463V1, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            0             30
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RETN MUTATED        1      0      2      0
  RETN WILD-TYPE     34     30     32     26
D463V2, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            1             34
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RETN MUTATED        0      0      0      0      1
  RETN WILD-TYPE     29     18     13      9     12
D463V3, multiclass
[1] "Remove cluster labels:" "RETN MUTATED"          
clus
  RETN MUTATED RETN WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-Z5-AAPL 
"RETN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RETN MUTATED        0      0      1      0      0
  RETN WILD-TYPE     32     18     11     10     10
D463V4, multiclass
[1] "Remove cluster labels:" "RETN MUTATED"          
clus
  RETN MUTATED RETN WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-Z5-AAPL 
"RETN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RETN MUTATED        1      0      2      0      0
  RETN WILD-TYPE     25     20     26     25     20
D463V5, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            0             25
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RETN MUTATED        0      3      0
  RETN WILD-TYPE     48     50     18
D463V6, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            0             48
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RETN MUTATED        2      1      0      0      0
  RETN WILD-TYPE     35     30     17     21     13
D463V7, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            0             21
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RETN MUTATED        3      0      0
  RETN WILD-TYPE     68     27     21
D463V8, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RETN MUTATED        0      1      0      0      2      0      0
  RETN WILD-TYPE     18      7     10      8     34     25     12
D463V9, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RETN MUTATED        0      3      0      0      0      0
  RETN WILD-TYPE     17     29     13     32     16      7
D463V10, multiclass
        clus
vv       RETN MUTATED RETN WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3             29
  CLUS_3            0             13
  CLUS_4            0             32
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(464) Variable = RSC1A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSC1A1 MUTATED        0      1      1      1
  RSC1A1 WILD-TYPE     19     52     29     23
D464V1, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSC1A1 MUTATED        2      0      0      1
  RSC1A1 WILD-TYPE     33     30     34     25
D464V2, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSC1A1 MUTATED        1      0      0      1      0
  RSC1A1 WILD-TYPE     28     18     13      8     13
D464V3, multiclass
[1] "Remove cluster labels:" "RSC1A1 MUTATED"        
clus
  RSC1A1 MUTATED RSC1A1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSC1A1 MUTATED        2      0      0      0      0
  RSC1A1 WILD-TYPE     30     18     12     10     10
D464V4, multiclass
[1] "Remove cluster labels:" "RSC1A1 MUTATED"        
clus
  RSC1A1 MUTATED RSC1A1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" "RSC1A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSC1A1 MUTATED        0      1      0      1      1
  RSC1A1 WILD-TYPE     26     19     28     24     19
D464V5, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RSC1A1 MUTATED        1      2      0
  RSC1A1 WILD-TYPE     47     51     18
D464V6, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSC1A1 MUTATED        0      1      0      1      1
  RSC1A1 WILD-TYPE     37     30     17     20     12
D464V7, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RSC1A1 MUTATED        2      0      1
  RSC1A1 WILD-TYPE     69     27     20
D464V8, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RSC1A1 MUTATED        0      0      1      0      0      2      0
  RSC1A1 WILD-TYPE     18      8      9      8     36     23     12
D464V9, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RSC1A1 MUTATED        0      0      1      1      1      0
  RSC1A1 WILD-TYPE     17     32     12     31     15      7
D464V10, multiclass
        clus
vv       RSC1A1 MUTATED RSC1A1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(465) Variable = RYR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED        3      5      4      2
  RYR2 WILD-TYPE     16     48     26     22
D465V1, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            3             16
  CLUS_2            5             48
  CLUS_3            4             26
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED        5      2      6      1
  RYR2 WILD-TYPE     30     28     28     25
D465V2, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            5             30
  CLUS_2            2             28
  CLUS_3            6             28
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED        3      1      1      2      3
  RYR2 WILD-TYPE     26     17     12      7     10
D465V3, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            3             26
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            2              7
  CLUS_5            3             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED        4      2      1      1      2
  RYR2 WILD-TYPE     28     16     11      9      8
D465V4, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            2             16
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED        4      2      5      2      1
  RYR2 WILD-TYPE     22     18     23     23     19
D465V5, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            4             22
  CLUS_2            2             18
  CLUS_3            5             23
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED        7      7      0
  RYR2 WILD-TYPE     41     46     18
D465V6, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            7             41
  CLUS_2            7             46
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED        5      3      1      4      1
  RYR2 WILD-TYPE     32     28     16     17     12
D465V7, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            5             32
  CLUS_2            3             28
  CLUS_3            1             16
  CLUS_4            4             17
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED       11      3      0
  RYR2 WILD-TYPE     60     24     21
D465V8, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           11             60
  CLUS_2            3             24
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RYR2 MUTATED        3      1      1      1      5      1      0
  RYR2 WILD-TYPE     15      7      9      7     31     24     12
D465V9, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            5             31
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RYR2 MUTATED        2      5      2      3      0      0
  RYR2 WILD-TYPE     15     27     11     29     16      7
D465V10, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            5             27
  CLUS_3            2             11
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(466) Variable = HNRNPCL1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPCL1 MUTATED        0      4      2      0
  HNRNPCL1 WILD-TYPE     19     49     28     24
D466V1, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                4                 49
  CLUS_3                2                 28
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPCL1 MUTATED        2      2      2      0
  HNRNPCL1 WILD-TYPE     33     28     32     26
D466V2, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                2                 28
  CLUS_3                2                 32
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPCL1 MUTATED        1      0      1      1      1
  HNRNPCL1 WILD-TYPE     28     18     12      8     12
D466V3, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                0                 18
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPCL1 MUTATED        2      0      2      0      0
  HNRNPCL1 WILD-TYPE     30     18     10     10     10
D466V4, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                0                 18
  CLUS_3                2                 10
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPCL1 MUTATED        1      1      2      2      0
  HNRNPCL1 WILD-TYPE     25     19     26     23     20
D466V5, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                2                 26
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HNRNPCL1 MUTATED        4      2      0
  HNRNPCL1 WILD-TYPE     44     51     18
D466V6, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                2                 51
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPCL1 MUTATED        2      1      0      3      0
  HNRNPCL1 WILD-TYPE     35     30     17     18     13
D466V7, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                1                 30
  CLUS_3                0                 17
  CLUS_4                3                 18
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HNRNPCL1 MUTATED        5      1      0
  HNRNPCL1 WILD-TYPE     66     26     21
D466V8, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                5                 66
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNRNPCL1 MUTATED        1      0      3      0      1      1      0
  HNRNPCL1 WILD-TYPE     17      8      7      8     35     24     12
D466V9, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                3                  7
  CLUS_4                0                  8
  CLUS_5                1                 35
  CLUS_6                1                 24
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNRNPCL1 MUTATED        3      0      1      2      0      0
  HNRNPCL1 WILD-TYPE     14     32     12     30     16      7
D466V10, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                3                 14
  CLUS_2                0                 32
  CLUS_3                1                 12
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(467) Variable = SEPHS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEPHS2 MUTATED        1      2      1      1
  SEPHS2 WILD-TYPE     18     51     29     23
D467V1, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEPHS2 MUTATED        1      1      3      0
  SEPHS2 WILD-TYPE     34     29     31     26
D467V2, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              3               31
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEPHS2 MUTATED        2      1      2      0      0
  SEPHS2 WILD-TYPE     27     17     11      9     13
D467V3, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              2               11
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEPHS2 MUTATED        3      1      0      0      1
  SEPHS2 WILD-TYPE     29     17     12     10      9
D467V4, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEPHS2 MUTATED        1      0      3      1      0
  SEPHS2 WILD-TYPE     25     20     25     24     20
D467V5, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              3               25
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        1      3      1
  SEPHS2 WILD-TYPE     47     50     17
D467V6, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              3               50
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEPHS2 MUTATED        3      1      1      0      0
  SEPHS2 WILD-TYPE     34     30     16     21     13
D467V7, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEPHS2 MUTATED        3      1      1
  SEPHS2 WILD-TYPE     68     26     20
D467V8, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEPHS2 MUTATED        1      0      0      0      3      1      0
  SEPHS2 WILD-TYPE     17      8     10      8     33     24     12
D467V9, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEPHS2 MUTATED        0      3      0      1      1      0
  SEPHS2 WILD-TYPE     17     29     13     31     15      7
D467V10, multiclass
        clus
vv       SEPHS2 MUTATED SEPHS2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(468) Variable = KIAA0020 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0020 MUTATED        1      0      2      0
  KIAA0020 WILD-TYPE     18     53     28     24
D468V1, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                0                 53
  CLUS_3                2                 28
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0020 MUTATED        1      0      0      2
  KIAA0020 WILD-TYPE     34     30     34     24
D468V2, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                0                 30
  CLUS_3                0                 34
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0020 MUTATED        0      0      0      0      1
  KIAA0020 WILD-TYPE     29     18     13      9     12
D468V3, multiclass
[1] "Remove cluster labels:" "KIAA0020 MUTATED"      
clus
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A7LX 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A7M4         TCGA-IB-AAUM         TCGA-IB-AAUN 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-AAUO         TCGA-IB-AAUP         TCGA-IB-AAUS 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-S4-A8RO 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-US-A77G         TCGA-XD-AAUH         TCGA-XD-AAUI 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0020 MUTATED        0      0      0      0      1
  KIAA0020 WILD-TYPE     32     18     12     10      9
D468V4, multiclass
[1] "Remove cluster labels:" "KIAA0020 MUTATED"      
clus
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A7LX 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A7M4         TCGA-IB-AAUM         TCGA-IB-AAUN 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-AAUO         TCGA-IB-AAUP         TCGA-IB-AAUS 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-S4-A8RO 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-US-A77G         TCGA-XD-AAUH         TCGA-XD-AAUI 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0020 MUTATED        0      0      0      1      2
  KIAA0020 WILD-TYPE     26     20     28     24     18
D468V5, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                0                 20
  CLUS_3                0                 28
  CLUS_4                1                 24
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        1      1      1
  KIAA0020 WILD-TYPE     47     52     17
D468V6, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                1                 52
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0020 MUTATED        1      2      0      0      0
  KIAA0020 WILD-TYPE     36     29     17     21     13
D468V7, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                2                 29
  CLUS_3                0                 17
  CLUS_4                0                 21
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        1      0      2
  KIAA0020 WILD-TYPE     70     27     19
D468V8, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                0                 27
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0020 MUTATED        0      0      0      0      0      3      0
  KIAA0020 WILD-TYPE     18      8     10      8     36     22     12
D468V9, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                0                 10
  CLUS_4                0                  8
  CLUS_5                0                 36
  CLUS_6                3                 22
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0020 MUTATED        0      0      0      1      2      0
  KIAA0020 WILD-TYPE     17     32     13     31     14      7
D468V10, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                0                 32
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                2                 14
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(469) Variable = ACVR2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED        0      0      2      1
  ACVR2A WILD-TYPE     19     53     28     23
D469V1, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED        1      0      0      2
  ACVR2A WILD-TYPE     34     30     34     24
D469V2, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR2A MUTATED        0      0      0      1      0
  ACVR2A WILD-TYPE     29     18     13      8     13
D469V3, multiclass
[1] "Remove cluster labels:" "ACVR2A MUTATED"        
clus
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-Z5-AAPL 
"ACVR2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR2A MUTATED        1      0      0      0      0
  ACVR2A WILD-TYPE     31     18     12     10     10
D469V4, multiclass
[1] "Remove cluster labels:" "ACVR2A MUTATED"        
clus
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-Z5-AAPL 
"ACVR2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR2A MUTATED        0      0      0      2      1
  ACVR2A WILD-TYPE     26     20     28     23     19
D469V5, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR2A MUTATED        2      1      0
  ACVR2A WILD-TYPE     46     52     18
D469V6, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR2A MUTATED        0      2      0      1      0
  ACVR2A WILD-TYPE     37     29     17     20     13
D469V7, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0               37
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR2A MUTATED        2      1      0
  ACVR2A WILD-TYPE     69     26     21
D469V8, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACVR2A MUTATED        0      0      2      0      0      1      0
  ACVR2A WILD-TYPE     18      8      8      8     36     24     12
D469V9, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACVR2A MUTATED        0      0      1      2      0      0
  ACVR2A WILD-TYPE     17     32     12     30     16      7
D469V10, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(470) Variable = CCDC158 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED        0      0      2      2
  CCDC158 WILD-TYPE     19     53     28     22
D470V1, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               0                53
  CLUS_3               2                28
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED        2      1      0      1
  CCDC158 WILD-TYPE     33     29     34     25
D470V2, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC158 MUTATED        1      0      0      1      1
  CCDC158 WILD-TYPE     28     18     13      8     12
D470V3, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC158 MUTATED        3      0      0      0      0
  CCDC158 WILD-TYPE     29     18     12     10     10
D470V4, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC158 MUTATED        0      0      0      2      2
  CCDC158 WILD-TYPE     26     20     28     23     18
D470V5, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC158 MUTATED        2      1      1
  CCDC158 WILD-TYPE     46     52     17
D470V6, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC158 MUTATED        0      2      1      1      0
  CCDC158 WILD-TYPE     37     29     16     20     13
D470V7, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               2                29
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC158 MUTATED        3      1      0
  CCDC158 WILD-TYPE     68     26     21
D470V8, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC158 MUTATED        0      0      1      0      1      1      1
  CCDC158 WILD-TYPE     18      8      9      8     35     24     11
D470V9, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC158 MUTATED        1      0      1      2      0      0
  CCDC158 WILD-TYPE     16     32     12     30     16      7
D470V10, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(471) Variable = FTH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FTH1 MUTATED        0      1      1      1
  FTH1 WILD-TYPE     19     52     29     23
D471V1, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FTH1 MUTATED        0      0      1      2
  FTH1 WILD-TYPE     35     30     33     24
D471V2, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FTH1 MUTATED        1      0      0      0      1
  FTH1 WILD-TYPE     28     18     13      9     12
D471V3, multiclass
[1] "Remove cluster labels:" "FTH1 MUTATED"          
clus
  FTH1 MUTATED FTH1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SS     TCGA-IB-A5ST 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FTH1 MUTATED        1      0      0      0      1
  FTH1 WILD-TYPE     31     18     12     10      9
D471V4, multiclass
[1] "Remove cluster labels:" "FTH1 MUTATED"          
clus
  FTH1 MUTATED FTH1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SS     TCGA-IB-A5ST 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FTH1 MUTATED        0      1      1      0      1
  FTH1 WILD-TYPE     26     19     27     25     19
D471V5, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            0             25
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FTH1 MUTATED        0      1      2
  FTH1 WILD-TYPE     48     52     16
D471V6, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            0             48
  CLUS_2            1             52
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FTH1 MUTATED        0      2      0      0      1
  FTH1 WILD-TYPE     37     29     17     21     12
D471V7, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            0             21
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FTH1 MUTATED        1      0      2
  FTH1 WILD-TYPE     70     27     19
D471V8, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            0             27
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FTH1 MUTATED        0      0      0      0      0      3      0
  FTH1 WILD-TYPE     18      8     10      8     36     22     12
D471V9, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            3             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FTH1 MUTATED        0      1      0      0      2      0
  FTH1 WILD-TYPE     17     31     13     32     14      7
D471V10, multiclass
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            0             32
  CLUS_5            2             14
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(472) Variable = BCKDHA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCKDHA MUTATED        0      3      0      0
  BCKDHA WILD-TYPE     19     50     30     24
D472V1, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              0               30
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCKDHA MUTATED        2      0      1      0
  BCKDHA WILD-TYPE     33     30     33     26
D472V2, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        1      0      0      1      0
  BCKDHA WILD-TYPE     28     18     13      8     13
D472V3, multiclass
[1] "Remove cluster labels:" "BCKDHA MUTATED"        
clus
  BCKDHA MUTATED BCKDHA WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        1      0      0      1      0
  BCKDHA WILD-TYPE     31     18     12      9     10
D472V4, multiclass
[1] "Remove cluster labels:" "BCKDHA MUTATED"        
clus
  BCKDHA MUTATED BCKDHA WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" "BCKDHA WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        1      0      1      1      0
  BCKDHA WILD-TYPE     25     20     27     24     20
D472V5, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCKDHA MUTATED        1      2      0
  BCKDHA WILD-TYPE     47     51     18
D472V6, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        2      0      1      0      0
  BCKDHA WILD-TYPE     35     31     16     21     13
D472V7, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCKDHA MUTATED        3      0      0
  BCKDHA WILD-TYPE     68     27     21
D472V8, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCKDHA MUTATED        0      1      0      0      2      0      0
  BCKDHA WILD-TYPE     18      7     10      8     34     25     12
D472V9, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCKDHA MUTATED        0      2      0      1      0      0
  BCKDHA WILD-TYPE     17     30     13     31     16      7
D472V10, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(473) Variable = SLC34A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC34A2 MUTATED        1      2      1      1
  SLC34A2 WILD-TYPE     18     51     29     23
D473V1, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC34A2 MUTATED        3      1      1      0
  SLC34A2 WILD-TYPE     32     29     33     26
D473V2, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC34A2 MUTATED        0      1      1      2      0
  SLC34A2 WILD-TYPE     29     17     12      7     13
D473V3, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC34A2 MUTATED        1      1      1      1      0
  SLC34A2 WILD-TYPE     31     17     11      9     10
D473V4, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC34A2 MUTATED        1      1      2      1      0
  SLC34A2 WILD-TYPE     25     19     26     24     20
D473V5, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               2                26
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC34A2 MUTATED        2      2      1
  SLC34A2 WILD-TYPE     46     51     17
D473V6, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC34A2 MUTATED        3      0      0      2      0
  SLC34A2 WILD-TYPE     34     31     17     19     13
D473V7, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC34A2 MUTATED        4      0      1
  SLC34A2 WILD-TYPE     67     27     20
D473V8, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               0                27
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC34A2 MUTATED        0      0      2      0      2      0      1
  SLC34A2 WILD-TYPE     18      8      8      8     34     25     11
D473V9, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC34A2 MUTATED        1      2      0      1      0      1
  SLC34A2 WILD-TYPE     16     30     13     31     16      6
D473V10, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(474) Variable = RAB11FIP5 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB11FIP5 MUTATED        0      2      0      1
  RAB11FIP5 WILD-TYPE     19     51     30     23
D474V1, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 0                  19
  CLUS_2                 2                  51
  CLUS_3                 0                  30
  CLUS_4                 1                  23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB11FIP5 MUTATED        2      0      1      0
  RAB11FIP5 WILD-TYPE     33     30     33     26
D474V2, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 2                  33
  CLUS_2                 0                  30
  CLUS_3                 1                  33
  CLUS_4                 0                  26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP5 MUTATED        2      1      0      0      0
  RAB11FIP5 WILD-TYPE     27     17     13      9     13
D474V3, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 2                  27
  CLUS_2                 1                  17
  CLUS_3                 0                  13
  CLUS_4                 0                   9
  CLUS_5                 0                  13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP5 MUTATED        2      1      0      0      0
  RAB11FIP5 WILD-TYPE     30     17     12     10     10
D474V4, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 2                  30
  CLUS_2                 1                  17
  CLUS_3                 0                  12
  CLUS_4                 0                  10
  CLUS_5                 0                  10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP5 MUTATED        2      0      0      0      1
  RAB11FIP5 WILD-TYPE     24     20     28     25     19
D474V5, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 2                  24
  CLUS_2                 0                  20
  CLUS_3                 0                  28
  CLUS_4                 0                  25
  CLUS_5                 1                  19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        1      2      0
  RAB11FIP5 WILD-TYPE     47     51     18
D474V6, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 1                  47
  CLUS_2                 2                  51
  CLUS_3                 0                  18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB11FIP5 MUTATED        2      1      0      0      0
  RAB11FIP5 WILD-TYPE     35     30     17     21     13
D474V7, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 2                  35
  CLUS_2                 1                  30
  CLUS_3                 0                  17
  CLUS_4                 0                  21
  CLUS_5                 0                  13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        3      0      0
  RAB11FIP5 WILD-TYPE     68     27     21
D474V8, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 3                  68
  CLUS_2                 0                  27
  CLUS_3                 0                  21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB11FIP5 MUTATED        0      0      0      0      1      2      0
  RAB11FIP5 WILD-TYPE     18      8     10      8     35     23     12
D474V9, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 0                  18
  CLUS_2                 0                   8
  CLUS_3                 0                  10
  CLUS_4                 0                   8
  CLUS_5                 1                  35
  CLUS_6                 2                  23
  CLUS_7                 0                  12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAB11FIP5 MUTATED        0      2      1      0      0      0
  RAB11FIP5 WILD-TYPE     17     30     12     32     16      7
D474V10, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 0                  17
  CLUS_2                 2                  30
  CLUS_3                 1                  12
  CLUS_4                 0                  32
  CLUS_5                 0                  16
  CLUS_6                 0                   7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(475) Variable = ATP6V1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        0      0      1      2
  ATP6V1A WILD-TYPE     19     53     29     22
D475V1, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               0                19
  CLUS_2               0                53
  CLUS_3               1                29
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        1      0      1      1
  ATP6V1A WILD-TYPE     34     30     33     25
D475V2, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1A MUTATED        1      0      0      0      0
  ATP6V1A WILD-TYPE     28     18     13      9     13
D475V3, multiclass
[1] "Remove cluster labels:" "ATP6V1A MUTATED"       
clus
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-XD-AAUL        TCGA-XN-A8T5        TCGA-YH-A8SY        TCGA-YY-A8LH 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-Z5-AAPL 
"ATP6V1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1A MUTATED        1      0      0      0      0
  ATP6V1A WILD-TYPE     31     18     12     10     10
D475V4, multiclass
[1] "Remove cluster labels:" "ATP6V1A MUTATED"       
clus
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-XD-AAUL        TCGA-XN-A8T5        TCGA-YH-A8SY        TCGA-YY-A8LH 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-Z5-AAPL 
"ATP6V1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1A MUTATED        1      1      0      0      1
  ATP6V1A WILD-TYPE     25     19     28     25     19
D475V5, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               0                25
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1A MUTATED        0      3      0
  ATP6V1A WILD-TYPE     48     50     18
D475V6, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               0                48
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1A MUTATED        1      1      0      1      0
  ATP6V1A WILD-TYPE     36     30     17     20     13
D475V7, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1A MUTATED        3      0      0
  ATP6V1A WILD-TYPE     68     27     21
D475V8, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP6V1A MUTATED        0      0      0      0      0      2      0
  ATP6V1A WILD-TYPE     18      8     10      8     36     23     12
D475V9, multiclass
[1] "Remove cluster labels:" "ATP6V1A MUTATED"       
clus
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                2               115 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2L-AAQA 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2L-AAQE        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IL        TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9J0        TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-AAPU        TCGA-FB-AAPZ        TCGA-FB-AAQ0        TCGA-FB-AAQ1 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-AAQ2        TCGA-FB-AAQ3        TCGA-FB-AAQ6        TCGA-H8-A6C1 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-HV-A7OL        TCGA-HV-AA8V        TCGA-HV-AA8X        TCGA-HZ-7918 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-8637        TCGA-HZ-A49I        TCGA-HZ-A77O 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-HZ-A77P        TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-RL-AAAS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUG        TCGA-XD-AAUH 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T3        TCGA-XN-A8T5 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1A MUTATED        0      1      1      0      0      0
  ATP6V1A WILD-TYPE     17     31     12     32     16      7
D475V10, multiclass
[1] "Remove cluster labels:" "ATP6V1A MUTATED"       
clus
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                2               115 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2L-AAQA 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2L-AAQE        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IL        TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-3A-A9J0        TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-AAPU        TCGA-FB-AAPZ        TCGA-FB-AAQ0        TCGA-FB-AAQ1 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-FB-AAQ2        TCGA-FB-AAQ3        TCGA-FB-AAQ6        TCGA-H8-A6C1 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-HV-A7OL        TCGA-HV-AA8V        TCGA-HV-AA8X        TCGA-HZ-7918 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-8637        TCGA-HZ-A49I        TCGA-HZ-A77O 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-HZ-A77P        TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-RL-AAAS 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUG        TCGA-XD-AAUH 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T3        TCGA-XN-A8T5 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 

Clustering(476) Variable = TMEM41B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        0      2      0      1
  TMEM41B WILD-TYPE     19     51     30     23
D476V1, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               0                30
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        2      0      1      0
  TMEM41B WILD-TYPE     33     30     33     26
D476V2, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        2      0      1      0      0
  TMEM41B WILD-TYPE     27     18     12      9     13
D476V3, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               1                12
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        1      0      1      1      0
  TMEM41B WILD-TYPE     31     18     11      9     10
D476V4, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                31
  CLUS_2               0                18
  CLUS_3               1                11
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        1      0      1      1      0
  TMEM41B WILD-TYPE     25     20     27     24     20
D476V5, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        2      1      0
  TMEM41B WILD-TYPE     46     52     18
D476V6, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        1      0      0      2      0
  TMEM41B WILD-TYPE     36     31     17     19     13
D476V7, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        3      0      0
  TMEM41B WILD-TYPE     68     27     21
D476V8, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM41B MUTATED        1      0      1      0      1      0      0
  TMEM41B WILD-TYPE     17      8      9      8     35     25     12
D476V9, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41B MUTATED        1      0      1      1      0      0
  TMEM41B WILD-TYPE     16     32     12     31     16      7
D476V10, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(477) Variable = GIGYF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF1 MUTATED        1      1      1      0
  GIGYF1 WILD-TYPE     18     52     29     24
D477V1, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF1 MUTATED        1      1      1      0
  GIGYF1 WILD-TYPE     34     29     33     26
D477V2, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF1 MUTATED        0      0      0      1      0
  GIGYF1 WILD-TYPE     29     18     13      8     13
D477V3, multiclass
[1] "Remove cluster labels:" "GIGYF1 MUTATED"        
clus
  GIGYF1 MUTATED GIGYF1 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-Z5-AAPL 
"GIGYF1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF1 MUTATED        1      0      0      0      0
  GIGYF1 WILD-TYPE     31     18     12     10     10
D477V4, multiclass
[1] "Remove cluster labels:" "GIGYF1 MUTATED"        
clus
  GIGYF1 MUTATED GIGYF1 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" "GIGYF1 WILD-TYPE" 
      TCGA-Z5-AAPL 
"GIGYF1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF1 MUTATED        0      0      1      2      0
  GIGYF1 WILD-TYPE     26     20     27     23     20
D477V5, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF1 MUTATED        2      1      0
  GIGYF1 WILD-TYPE     46     52     18
D477V6, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF1 MUTATED        0      1      1      1      0
  GIGYF1 WILD-TYPE     37     30     16     20     13
D477V7, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF1 MUTATED        2      1      0
  GIGYF1 WILD-TYPE     69     26     21
D477V8, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GIGYF1 MUTATED        1      1      1      0      0      0      0
  GIGYF1 WILD-TYPE     17      7      9      8     36     25     12
D477V9, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIGYF1 MUTATED        0      1      0      2      0      0
  GIGYF1 WILD-TYPE     17     31     13     30     16      7
D477V10, multiclass
        clus
vv       GIGYF1 MUTATED GIGYF1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(478) Variable = EPB41L4B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L4B MUTATED        1      2      1      0
  EPB41L4B WILD-TYPE     18     51     29     24
D478V1, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                2                 51
  CLUS_3                1                 29
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L4B MUTATED        3      0      1      0
  EPB41L4B WILD-TYPE     32     30     33     26
D478V2, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                0                 30
  CLUS_3                1                 33
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        1      0      0      1      0
  EPB41L4B WILD-TYPE     28     18     13      8     13
D478V3, multiclass
[1] "Remove cluster labels:" "EPB41L4B MUTATED"      
clus
  EPB41L4B MUTATED EPB41L4B WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5921         TCGA-FZ-5922 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        2      0      0      0      0
  EPB41L4B WILD-TYPE     30     18     12     10     10
D478V4, multiclass
[1] "Remove cluster labels:" "EPB41L4B MUTATED"      
clus
  EPB41L4B MUTATED EPB41L4B WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5921         TCGA-FZ-5922 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"EPB41L4B WILD-TYPE" "EPB41L4B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        2      0      0      1      0
  EPB41L4B WILD-TYPE     24     20     28     24     20
D478V5, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 20
  CLUS_3                0                 28
  CLUS_4                1                 24
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  EPB41L4B MUTATED        2      1      0
  EPB41L4B WILD-TYPE     46     52     18
D478V6, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                1                 52
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        2      0      0      1      0
  EPB41L4B WILD-TYPE     35     31     17     20     13
D478V7, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                0                 31
  CLUS_3                0                 17
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  EPB41L4B MUTATED        3      0      0
  EPB41L4B WILD-TYPE     68     27     21
D478V8, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                0                 27
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPB41L4B MUTATED        1      0      1      0      1      0      0
  EPB41L4B WILD-TYPE     17      8      9      8     35     25     12
D478V9, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                1                 35
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB41L4B MUTATED        2      0      0      1      0      0
  EPB41L4B WILD-TYPE     15     32     13     31     16      7
D478V10, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                0                 32
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(479) Variable = EPHX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHX1 MUTATED        1      1      2      0
  EPHX1 WILD-TYPE     18     52     28     24
D479V1, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHX1 MUTATED        1      0      2      1
  EPHX1 WILD-TYPE     34     30     32     25
D479V2, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      0      2      1      0
  EPHX1 WILD-TYPE     29     18     11      8     13
D479V3, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             0              18
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        1      0      2      0      0
  EPHX1 WILD-TYPE     31     18     10     10     10
D479V4, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             2              10
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      0      2      2      0
  EPHX1 WILD-TYPE     26     20     26     23     20
D479V5, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHX1 MUTATED        3      1      0
  EPHX1 WILD-TYPE     45     52     18
D479V6, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      3      0      1      0
  EPHX1 WILD-TYPE     37     28     17     20     13
D479V7, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHX1 MUTATED        3      1      0
  EPHX1 WILD-TYPE     68     26     21
D479V8, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHX1 MUTATED        0      1      2      0      0      1      0
  EPHX1 WILD-TYPE     18      7      8      8     36     24     12
D479V9, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHX1 MUTATED        1      1      0      2      0      0
  EPHX1 WILD-TYPE     16     31     13     30     16      7
D479V10, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(480) Variable = LUZP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        0      3      0      0
  LUZP1 WILD-TYPE     19     50     30     24
D480V1, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        3      0      0      0
  LUZP1 WILD-TYPE     32     30     34     26
D480V2, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUZP1 MUTATED        1      0      0      1      0
  LUZP1 WILD-TYPE     28     18     13      8     13
D480V3, multiclass
[1] "Remove cluster labels:" "LUZP1 MUTATED"         
clus
  LUZP1 MUTATED LUZP1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUZP1 MUTATED        1      0      0      1      0
  LUZP1 WILD-TYPE     31     18     12      9     10
D480V4, multiclass
[1] "Remove cluster labels:" "LUZP1 MUTATED"         
clus
  LUZP1 MUTATED LUZP1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" "LUZP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUZP1 MUTATED        1      0      1      1      0
  LUZP1 WILD-TYPE     25     20     27     24     20
D480V5, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        1      2      0
  LUZP1 WILD-TYPE     47     51     18
D480V6, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUZP1 MUTATED        2      0      1      0      0
  LUZP1 WILD-TYPE     35     31     16     21     13
D480V7, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        3      0      0
  LUZP1 WILD-TYPE     68     27     21
D480V8, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LUZP1 MUTATED        0      0      0      0      3      0      0
  LUZP1 WILD-TYPE     18      8     10      8     33     25     12
D480V9, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LUZP1 MUTATED        0      2      0      1      0      0
  LUZP1 WILD-TYPE     17     30     13     31     16      7
D480V10, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(481) Variable = ZHX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        0      3      0      0
  ZHX1 WILD-TYPE     19     50     30     24
D481V1, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            0             30
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        1      2      0      0
  ZHX1 WILD-TYPE     34     28     34     26
D481V2, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            2             28
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX1 MUTATED        1      0      0      1      0
  ZHX1 WILD-TYPE     28     18     13      8     13
D481V3, multiclass
[1] "Remove cluster labels:" "ZHX1 MUTATED"          
clus
  ZHX1 MUTATED ZHX1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7925     TCGA-IB-7651 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX1 MUTATED        0      0      0      2      0
  ZHX1 WILD-TYPE     32     18     12      8     10
D481V4, multiclass
[1] "Remove cluster labels:" "ZHX1 MUTATED"          
clus
  ZHX1 MUTATED ZHX1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7925     TCGA-IB-7651 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX1 MUTATED        0      0      0      3      0
  ZHX1 WILD-TYPE     26     20     28     22     20
D481V5, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            3             22
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX1 MUTATED        3      0      0
  ZHX1 WILD-TYPE     45     53     18
D481V6, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            0             53
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZHX1 MUTATED        0      0      2      1      0
  ZHX1 WILD-TYPE     37     31     15     20     13
D481V7, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            0             31
  CLUS_3            2             15
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX1 MUTATED        1      2      0
  ZHX1 WILD-TYPE     70     25     21
D481V8, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZHX1 MUTATED        0      0      1      0      2      0      0
  ZHX1 WILD-TYPE     18      8      9      8     34     25     12
D481V9, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZHX1 MUTATED        0      0      0      3      0      0
  ZHX1 WILD-TYPE     17     32     13     29     16      7
D481V10, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(482) Variable = GNAL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAL MUTATED        0      2      1      0
  GNAL WILD-TYPE     19     51     29     24
D482V1, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAL MUTATED        3      0      0      0
  GNAL WILD-TYPE     32     30     34     26
D482V2, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAL MUTATED        1      0      0      1      0
  GNAL WILD-TYPE     28     18     13      8     13
D482V3, multiclass
[1] "Remove cluster labels:" "GNAL MUTATED"          
clus
  GNAL MUTATED GNAL WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A78T 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAL MUTATED        1      0      0      1      0
  GNAL WILD-TYPE     31     18     12      9     10
D482V4, multiclass
[1] "Remove cluster labels:" "GNAL MUTATED"          
clus
  GNAL MUTATED GNAL WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A78T 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" "GNAL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAL MUTATED        1      0      1      1      0
  GNAL WILD-TYPE     25     20     27     24     20
D482V5, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAL MUTATED        1      1      1
  GNAL WILD-TYPE     47     52     17
D482V6, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            1             47
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAL MUTATED        1      1      1      0      0
  GNAL WILD-TYPE     36     30     16     21     13
D482V7, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            0             21
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAL MUTATED        2      0      1
  GNAL WILD-TYPE     69     27     20
D482V8, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            2             69
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNAL MUTATED        0      0      0      0      2      1      0
  GNAL WILD-TYPE     18      8     10      8     34     24     12
D482V9, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNAL MUTATED        0      1      0      1      1      0
  GNAL WILD-TYPE     17     31     13     31     15      7
D482V10, multiclass
        clus
vv       GNAL MUTATED GNAL WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(483) Variable = DOCK10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED        0      2      3      1
  DOCK10 WILD-TYPE     19     51     27     23
D483V1, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              3               27
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED        3      1      1      1
  DOCK10 WILD-TYPE     32     29     33     25
D483V2, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK10 MUTATED        2      1      0      2      0
  DOCK10 WILD-TYPE     27     17     13      7     13
D483V3, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK10 MUTATED        4      0      0      1      0
  DOCK10 WILD-TYPE     28     18     12      9     10
D483V4, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK10 MUTATED        2      1      0      3      0
  DOCK10 WILD-TYPE     24     19     28     22     20
D483V5, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOCK10 MUTATED        4      1      1
  DOCK10 WILD-TYPE     44     52     17
D483V6, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK10 MUTATED        2      0      2      1      1
  DOCK10 WILD-TYPE     35     31     15     20     12
D483V7, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              2               15
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOCK10 MUTATED        4      1      1
  DOCK10 WILD-TYPE     67     26     20
D483V8, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOCK10 MUTATED        0      1      2      0      2      1      0
  DOCK10 WILD-TYPE     18      7      8      8     34     24     12
D483V9, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DOCK10 MUTATED        1      1      0      3      1      0
  DOCK10 WILD-TYPE     16     31     13     29     15      7
D483V10, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(484) Variable = CDC25A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC25A MUTATED        2      1      0      0
  CDC25A WILD-TYPE     17     52     30     24
D484V1, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              2               17
  CLUS_2              1               52
  CLUS_3              0               30
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC25A MUTATED        1      1      1      0
  CDC25A WILD-TYPE     34     29     33     26
D484V2, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25A MUTATED        0      1      0      0      0
  CDC25A WILD-TYPE     29     17     13      9     13
D484V3, multiclass
[1] "Remove cluster labels:" "CDC25A MUTATED"        
clus
  CDC25A MUTATED CDC25A WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-OE-A75W       TCGA-Q3-A5QY 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-Z5-AAPL 
"CDC25A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25A MUTATED        0      1      0      0      0
  CDC25A WILD-TYPE     32     17     12     10     10
D484V4, multiclass
[1] "Remove cluster labels:" "CDC25A MUTATED"        
clus
  CDC25A MUTATED CDC25A WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-OE-A75W       TCGA-Q3-A5QY 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-Z5-AAPL 
"CDC25A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25A MUTATED        0      0      1      1      1
  CDC25A WILD-TYPE     26     20     27     24     19
D484V5, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC25A MUTATED        1      2      0
  CDC25A WILD-TYPE     47     51     18
D484V6, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25A MUTATED        1      1      1      0      0
  CDC25A WILD-TYPE     36     30     16     21     13
D484V7, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC25A MUTATED        2      1      0
  CDC25A WILD-TYPE     69     26     21
D484V8, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC25A MUTATED        1      1      0      1      0      0      0
  CDC25A WILD-TYPE     17      7     10      7     36     25     12
D484V9, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC25A MUTATED        0      1      1      1      0      0
  CDC25A WILD-TYPE     17     31     12     31     16      7
D484V10, multiclass
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(485) Variable = VPS24 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS24 MUTATED        0      2      0      1
  VPS24 WILD-TYPE     19     51     30     23
D485V1, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             0              30
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS24 MUTATED        2      0      1      0
  VPS24 WILD-TYPE     33     30     33     26
D485V2, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS24 MUTATED        2      0      0      1      0
  VPS24 WILD-TYPE     27     18     13      8     13
D485V3, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS24 MUTATED        2      0      0      1      0
  VPS24 WILD-TYPE     30     18     12      9     10
D485V4, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS24 MUTATED        2      0      0      1      0
  VPS24 WILD-TYPE     24     20     28     24     20
D485V5, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS24 MUTATED        2      1      0
  VPS24 WILD-TYPE     46     52     18
D485V6, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS24 MUTATED        3      0      0      0      0
  VPS24 WILD-TYPE     34     31     17     21     13
D485V7, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS24 MUTATED        2      1      0
  VPS24 WILD-TYPE     69     26     21
D485V8, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VPS24 MUTATED        0      0      0      0      3      0      0
  VPS24 WILD-TYPE     18      8     10      8     33     25     12
D485V9, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPS24 MUTATED        1      1      0      1      0      0
  VPS24 WILD-TYPE     16     31     13     31     16      7
D485V10, multiclass
        clus
vv       VPS24 MUTATED VPS24 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(486) Variable = F5 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F5 MUTATED        1      4      5      1
  F5 WILD-TYPE     18     49     25     23
D486V1, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          1           18
  CLUS_2          4           49
  CLUS_3          5           25
  CLUS_4          1           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F5 MUTATED        7      1      2      1
  F5 WILD-TYPE     28     29     32     25
D486V2, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          7           28
  CLUS_2          1           29
  CLUS_3          2           32
  CLUS_4          1           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F5 MUTATED        3      2      1      1      2
  F5 WILD-TYPE     26     16     12      8     11
D486V3, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          3           26
  CLUS_2          2           16
  CLUS_3          1           12
  CLUS_4          1            8
  CLUS_5          2           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F5 MUTATED        5      2      1      0      1
  F5 WILD-TYPE     27     16     11     10      9
D486V4, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          5           27
  CLUS_2          2           16
  CLUS_3          1           11
  CLUS_4          0           10
  CLUS_5          1            9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F5 MUTATED        5      0      2      3      1
  F5 WILD-TYPE     21     20     26     22     19
D486V5, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          5           21
  CLUS_2          0           20
  CLUS_3          2           26
  CLUS_4          3           22
  CLUS_5          1           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F5 MUTATED        3      7      1
  F5 WILD-TYPE     45     46     17
D486V6, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          3           45
  CLUS_2          7           46
  CLUS_3          1           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F5 MUTATED        7      2      1      1      0
  F5 WILD-TYPE     30     29     16     20     13
D486V7, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          7           30
  CLUS_2          2           29
  CLUS_3          1           16
  CLUS_4          1           20
  CLUS_5          0           13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F5 MUTATED        9      1      1
  F5 WILD-TYPE     62     26     20
D486V8, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          9           62
  CLUS_2          1           26
  CLUS_3          1           20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  F5 MUTATED        1      1      1      1      5      2      0
  F5 WILD-TYPE     17      7      9      7     31     23     12
D486V9, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          1           17
  CLUS_2          1            7
  CLUS_3          1            9
  CLUS_4          1            7
  CLUS_5          5           31
  CLUS_6          2           23
  CLUS_7          0           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  F5 MUTATED        2      4      1      3      1      0
  F5 WILD-TYPE     15     28     12     29     15      7
D486V10, multiclass
        clus
vv       F5 MUTATED F5 WILD-TYPE
  CLUS_1          2           15
  CLUS_2          4           28
  CLUS_3          1           12
  CLUS_4          3           29
  CLUS_5          1           15
  CLUS_6          0            7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(487) Variable = AFF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF2 MUTATED        1      1      2      2
  AFF2 WILD-TYPE     18     52     28     22
D487V1, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF2 MUTATED        2      1      1      2
  AFF2 WILD-TYPE     33     29     33     24
D487V2, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF2 MUTATED        1      1      1      1      0
  AFF2 WILD-TYPE     28     17     12      8     13
D487V3, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF2 MUTATED        3      1      0      0      0
  AFF2 WILD-TYPE     29     17     12     10     10
D487V4, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF2 MUTATED        1      0      1      3      1
  AFF2 WILD-TYPE     25     20     27     22     19
D487V5, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            3             22
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF2 MUTATED        4      2      0
  AFF2 WILD-TYPE     44     51     18
D487V6, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFF2 MUTATED        0      2      2      1      1
  AFF2 WILD-TYPE     37     29     15     20     12
D487V7, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             29
  CLUS_3            2             15
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF2 MUTATED        3      2      1
  AFF2 WILD-TYPE     68     25     20
D487V8, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            2             25
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AFF2 MUTATED        1      0      2      1      1      0      1
  AFF2 WILD-TYPE     17      8      8      7     35     25     11
D487V9, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AFF2 MUTATED        1      0      1      4      0      0
  AFF2 WILD-TYPE     16     32     12     28     16      7
D487V10, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0             32
  CLUS_3            1             12
  CLUS_4            4             28
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(488) Variable = ZFHX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        2      3      2      3
  ZFHX3 WILD-TYPE     17     50     28     21
D488V1, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        3      2      2      3
  ZFHX3 WILD-TYPE     32     28     32     23
D488V2, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             2              32
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        1      1      0      3      0
  ZFHX3 WILD-TYPE     28     17     13      6     13
D488V3, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             3               6
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        1      1      0      3      0
  ZFHX3 WILD-TYPE     31     17     12      7     10
D488V4, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             3               7
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        3      0      1      3      2
  ZFHX3 WILD-TYPE     23     20     27     22     18
D488V5, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        4      5      0
  ZFHX3 WILD-TYPE     44     48     18
D488V6, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             5              48
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        2      3      1      3      0
  ZFHX3 WILD-TYPE     35     28     16     18     13
D488V7, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              28
  CLUS_3             1              16
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        6      3      0
  ZFHX3 WILD-TYPE     65     24     21
D488V8, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             6              65
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFHX3 MUTATED        0      0      3      1      4      1      0
  ZFHX3 WILD-TYPE     18      8      7      7     32     24     12
D488V9, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             3               7
  CLUS_4             1               7
  CLUS_5             4              32
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX3 MUTATED        1      2      2      3      1      0
  ZFHX3 WILD-TYPE     16     30     11     29     15      7
D488V10, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(489) Variable = RNF168 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF168 MUTATED        1      0      1      2
  RNF168 WILD-TYPE     18     53     29     22
D489V1, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              0               53
  CLUS_3              1               29
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF168 MUTATED        2      0      1      1
  RNF168 WILD-TYPE     33     30     33     25
D489V2, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF168 MUTATED        1      0      0      1      0
  RNF168 WILD-TYPE     28     18     13      8     13
D489V3, multiclass
[1] "Remove cluster labels:" "RNF168 MUTATED"        
clus
  RNF168 MUTATED RNF168 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-US-A776 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF168 MUTATED        2      0      0      0      0
  RNF168 WILD-TYPE     30     18     12     10     10
D489V4, multiclass
[1] "Remove cluster labels:" "RNF168 MUTATED"        
clus
  RNF168 MUTATED RNF168 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-US-A776 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF168 MUTATED        1      0      1      1      1
  RNF168 WILD-TYPE     25     20     27     24     19
D489V5, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF168 MUTATED        1      3      0
  RNF168 WILD-TYPE     47     50     18
D489V6, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF168 MUTATED        2      1      0      1      0
  RNF168 WILD-TYPE     35     30     17     20     13
D489V7, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF168 MUTATED        4      0      0
  RNF168 WILD-TYPE     67     27     21
D489V8, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF168 MUTATED        0      0      1      0      2      1      0
  RNF168 WILD-TYPE     18      8      9      8     34     24     12
D489V9, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF168 MUTATED        0      2      1      1      0      0
  RNF168 WILD-TYPE     17     30     12     31     16      7
D489V10, multiclass
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(490) Variable = TGFBI MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBI MUTATED        0      3      3      0
  TGFBI WILD-TYPE     19     50     27     24
D490V1, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBI MUTATED        2      0      2      2
  TGFBI WILD-TYPE     33     30     32     24
D490V2, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBI MUTATED        0      1      0      2      1
  TGFBI WILD-TYPE     29     17     13      7     12
D490V3, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBI MUTATED        1      2      0      1      0
  TGFBI WILD-TYPE     31     16     12      9     10
D490V4, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             1              31
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBI MUTATED        2      0      0      3      1
  TGFBI WILD-TYPE     24     20     28     22     19
D490V5, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TGFBI MUTATED        4      2      0
  TGFBI WILD-TYPE     44     51     18
D490V6, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBI MUTATED        2      2      0      2      0
  TGFBI WILD-TYPE     35     29     17     19     13
D490V7, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TGFBI MUTATED        4      2      0
  TGFBI WILD-TYPE     67     25     21
D490V8, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBI MUTATED        0      0      3      1      1      1      0
  TGFBI WILD-TYPE     18      8      7      7     35     24     12
D490V9, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             3               7
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TGFBI MUTATED        1      1      1      3      0      0
  TGFBI WILD-TYPE     16     31     12     29     16      7
D490V10, multiclass
        clus
vv       TGFBI MUTATED TGFBI WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(491) Variable = KLK13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK13 MUTATED        0      3      1      1
  KLK13 WILD-TYPE     19     50     29     23
D491V1, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK13 MUTATED        2      0      2      1
  KLK13 WILD-TYPE     33     30     32     25
D491V2, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK13 MUTATED        0      0      1      2      0
  KLK13 WILD-TYPE     29     18     12      7     13
D491V3, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK13 MUTATED        1      0      0      1      1
  KLK13 WILD-TYPE     31     18     12      9      9
D491V4, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK13 MUTATED        0      0      2      2      1
  KLK13 WILD-TYPE     26     20     26     23     19
D491V5, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        2      3      0
  KLK13 WILD-TYPE     46     50     18
D491V6, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK13 MUTATED        2      2      0      1      0
  KLK13 WILD-TYPE     35     29     17     20     13
D491V7, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK13 MUTATED        4      1      0
  KLK13 WILD-TYPE     67     26     21
D491V8, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLK13 MUTATED        0      0      1      0      2      2      0
  KLK13 WILD-TYPE     18      8      9      8     34     23     12
D491V9, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLK13 MUTATED        0      2      1      2      0      0
  KLK13 WILD-TYPE     17     30     12     30     16      7
D491V10, multiclass
        clus
vv       KLK13 MUTATED KLK13 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(492) Variable = ASS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASS1 MUTATED        1      0      1      2
  ASS1 WILD-TYPE     18     53     29     22
D492V1, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            0             53
  CLUS_3            1             29
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASS1 MUTATED        2      2      0      0
  ASS1 WILD-TYPE     33     28     34     26
D492V2, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             28
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASS1 MUTATED        1      0      0      1      0
  ASS1 WILD-TYPE     28     18     13      8     13
D492V3, multiclass
[1] "Remove cluster labels:" "ASS1 MUTATED"          
clus
  ASS1 MUTATED ASS1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-Z5-AAPL 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASS1 MUTATED        1      0      0      1      0
  ASS1 WILD-TYPE     31     18     12      9     10
D492V4, multiclass
[1] "Remove cluster labels:" "ASS1 MUTATED"          
clus
  ASS1 MUTATED ASS1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-Z5-AAPL 
"ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" "ASS1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASS1 MUTATED        2      2      0      0      0
  ASS1 WILD-TYPE     24     18     28     25     20
D492V5, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            2             18
  CLUS_3            0             28
  CLUS_4            0             25
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASS1 MUTATED        1      1      2
  ASS1 WILD-TYPE     47     52     16
D492V6, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            1             52
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASS1 MUTATED        2      0      0      2      0
  ASS1 WILD-TYPE     35     31     17     19     13
D492V7, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASS1 MUTATED        2      0      2
  ASS1 WILD-TYPE     69     27     19
D492V8, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            0             27
  CLUS_3            2             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASS1 MUTATED        1      0      0      0      1      0      2
  ASS1 WILD-TYPE     17      8     10      8     35     25     10
D492V9, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASS1 MUTATED        1      1      0      0      0      2
  ASS1 WILD-TYPE     16     31     13     32     16      5
D492V10, multiclass
        clus
vv       ASS1 MUTATED ASS1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            0             32
  CLUS_5            0             16
  CLUS_6            2              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(493) Variable = FOXD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXD4 MUTATED        1      2      3      0
  FOXD4 WILD-TYPE     18     51     27     24
D493V1, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXD4 MUTATED        3      1      1      1
  FOXD4 WILD-TYPE     32     29     33     25
D493V2, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXD4 MUTATED        0      0      1      1      1
  FOXD4 WILD-TYPE     29     18     12      8     12
D493V3, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXD4 MUTATED        1      0      0      0      2
  FOXD4 WILD-TYPE     31     18     12     10      8
D493V4, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXD4 MUTATED        1      1      3      1      0
  FOXD4 WILD-TYPE     25     19     25     24     20
D493V5, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXD4 MUTATED        2      3      1
  FOXD4 WILD-TYPE     46     50     17
D493V6, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXD4 MUTATED        1      0      0      3      2
  FOXD4 WILD-TYPE     36     31     17     18     11
D493V7, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             3              18
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXD4 MUTATED        4      0      2
  FOXD4 WILD-TYPE     67     27     19
D493V8, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXD4 MUTATED        0      1      1      0      1      1      1
  FOXD4 WILD-TYPE     18      7      9      8     35     24     11
D493V9, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXD4 MUTATED        1      1      0      2      1      0
  FOXD4 WILD-TYPE     16     31     13     30     15      7
D493V10, multiclass
        clus
vv       FOXD4 MUTATED FOXD4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(494) Variable = PVRL4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        1      2      0      0
  PVRL4 WILD-TYPE     18     51     30     24
D494V1, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        3      0      0      0
  PVRL4 WILD-TYPE     32     30     34     26
D494V2, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL4 MUTATED        1      0      0      0      0
  PVRL4 WILD-TYPE     28     18     13      9     13
D494V3, multiclass
[1] "Remove cluster labels:" "PVRL4 MUTATED"         
clus
  PVRL4 MUTATED PVRL4 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PVRL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL4 MUTATED        1      0      0      0      0
  PVRL4 WILD-TYPE     31     18     12     10     10
D494V4, multiclass
[1] "Remove cluster labels:" "PVRL4 MUTATED"         
clus
  PVRL4 MUTATED PVRL4 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PVRL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL4 MUTATED        2      0      1      0      0
  PVRL4 WILD-TYPE     24     20     27     25     20
D494V5, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL4 MUTATED        0      3      0
  PVRL4 WILD-TYPE     48     50     18
D494V6, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PVRL4 MUTATED        1      0      0      0      2
  PVRL4 WILD-TYPE     36     31     17     21     11
D494V7, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL4 MUTATED        2      0      1
  PVRL4 WILD-TYPE     69     27     20
D494V8, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PVRL4 MUTATED        1      0      0      0      1      0      1
  PVRL4 WILD-TYPE     17      8     10      8     35     25     11
D494V9, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PVRL4 MUTATED        1      1      0      1      0      0
  PVRL4 WILD-TYPE     16     31     13     31     16      7
D494V10, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(495) Variable = NBEA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED        0      1      2      0
  NBEA WILD-TYPE     19     52     28     24
D495V1, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED        2      0      1      0
  NBEA WILD-TYPE     33     30     33     26
D495V2, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBEA MUTATED        0      0      1      1      0
  NBEA WILD-TYPE     29     18     12      8     13
D495V3, multiclass
[1] "Remove cluster labels:" "NBEA MUTATED"          
clus
  NBEA MUTATED NBEA WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBEA MUTATED        1      0      1      0      0
  NBEA WILD-TYPE     31     18     11     10     10
D495V4, multiclass
[1] "Remove cluster labels:" "NBEA MUTATED"          
clus
  NBEA MUTATED NBEA WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBEA MUTATED        1      0      1      1      0
  NBEA WILD-TYPE     25     20     27     24     20
D495V5, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NBEA MUTATED        2      1      0
  NBEA WILD-TYPE     46     52     18
D495V6, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBEA MUTATED        1      0      0      2      0
  NBEA WILD-TYPE     36     31     17     19     13
D495V7, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NBEA MUTATED        3      0      0
  NBEA WILD-TYPE     68     27     21
D495V8, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBEA MUTATED        0      0      1      0      1      0      0
  NBEA WILD-TYPE     18      8      9      8     35     25     12
D495V9, multiclass
[1] "Remove cluster labels:" "NBEA MUTATED"          
clus
  NBEA MUTATED NBEA WILD-TYPE 
             2            115 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2L-AAQA 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7     TCGA-3A-A9I9 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH     TCGA-3A-A9IJ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR     TCGA-3A-A9IS 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IV     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3A-A9J0 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3E-AAAY     TCGA-3E-AAAZ     TCGA-F2-7273     TCGA-F2-A44G 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-F2-A7TX     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPS     TCGA-FB-AAPU 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAPZ     TCGA-FB-AAQ0     TCGA-FB-AAQ1     TCGA-FB-AAQ2 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAQ3     TCGA-FB-AAQ6     TCGA-H8-A6C1     TCGA-HV-A7OL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-HV-AA8V     TCGA-HV-AA8X     TCGA-HZ-7918     TCGA-HZ-7925 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-A49I     TCGA-HZ-A77O     TCGA-HZ-A77P 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-HZ-A77Q     TCGA-HZ-A8P0     TCGA-HZ-A8P1     TCGA-HZ-A9TJ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A6UG     TCGA-IB-A7LX     TCGA-IB-A7M4 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUQ     TCGA-IB-AAUR     TCGA-IB-AAUS     TCGA-IB-AAUU 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-RL-AAAS     TCGA-S4-A8RO 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUG     TCGA-XD-AAUH     TCGA-XD-AAUI 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-XD-AAUL     TCGA-XN-A8T3     TCGA-XN-A8T5     TCGA-YB-A89D 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBEA MUTATED        0      0      0      2      0      0
  NBEA WILD-TYPE     17     32     13     30     16      7
D495V10, multiclass
[1] "Remove cluster labels:" "NBEA MUTATED"          
clus
  NBEA MUTATED NBEA WILD-TYPE 
             2            115 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2L-AAQA 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7     TCGA-3A-A9I9 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH     TCGA-3A-A9IJ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR     TCGA-3A-A9IS 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3A-A9IV     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3A-A9J0 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-3E-AAAY     TCGA-3E-AAAZ     TCGA-F2-7273     TCGA-F2-A44G 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-F2-A7TX     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPS     TCGA-FB-AAPU 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAPZ     TCGA-FB-AAQ0     TCGA-FB-AAQ1     TCGA-FB-AAQ2 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-FB-AAQ3     TCGA-FB-AAQ6     TCGA-H8-A6C1     TCGA-HV-A7OL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-HV-AA8V     TCGA-HV-AA8X     TCGA-HZ-7918     TCGA-HZ-7925 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-A49I     TCGA-HZ-A77O     TCGA-HZ-A77P 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-HZ-A77Q     TCGA-HZ-A8P0     TCGA-HZ-A8P1     TCGA-HZ-A9TJ 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A6UG     TCGA-IB-A7LX     TCGA-IB-A7M4 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUQ     TCGA-IB-AAUR     TCGA-IB-AAUS     TCGA-IB-AAUU 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-RL-AAAS     TCGA-S4-A8RO 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUG     TCGA-XD-AAUH     TCGA-XD-AAUI 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-XD-AAUL     TCGA-XN-A8T3     TCGA-XN-A8T5     TCGA-YB-A89D 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 

Clustering(496) Variable = ZNF737 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF737 MUTATED        0      3      1      1
  ZNF737 WILD-TYPE     19     50     29     23
D496V1, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF737 MUTATED        3      2      0      0
  ZNF737 WILD-TYPE     32     28     34     26
D496V2, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF737 MUTATED        1      1      0      0      1
  ZNF737 WILD-TYPE     28     17     13      9     12
D496V3, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF737 MUTATED        1      2      0      0      0
  ZNF737 WILD-TYPE     31     16     12     10     10
D496V4, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              2               16
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF737 MUTATED        1      1      1      2      0
  ZNF737 WILD-TYPE     25     19     27     23     20
D496V5, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF737 MUTATED        2      2      1
  ZNF737 WILD-TYPE     46     51     17
D496V6, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF737 MUTATED        2      0      1      2      0
  ZNF737 WILD-TYPE     35     31     16     19     13
D496V7, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF737 MUTATED        3      1      1
  ZNF737 WILD-TYPE     68     26     20
D496V8, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF737 MUTATED        2      0      0      0      2      0      1
  ZNF737 WILD-TYPE     16      8     10      8     34     25     11
D496V9, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF737 MUTATED        1      1      0      2      0      1
  ZNF737 WILD-TYPE     16     31     13     30     16      6
D496V10, multiclass
        clus
vv       ZNF737 MUTATED ZNF737 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(497) Variable = CPVL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPVL MUTATED        0      2      0      1
  CPVL WILD-TYPE     19     51     30     23
D497V1, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            0             30
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPVL MUTATED        2      0      1      0
  CPVL WILD-TYPE     33     30     33     26
D497V2, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPVL MUTATED        2      0      0      0      0
  CPVL WILD-TYPE     27     18     13      9     13
D497V3, multiclass
[1] "Remove cluster labels:" "CPVL MUTATED"          
clus
  CPVL MUTATED CPVL WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPVL MUTATED        2      0      0      0      0
  CPVL WILD-TYPE     30     18     12     10     10
D497V4, multiclass
[1] "Remove cluster labels:" "CPVL MUTATED"          
clus
  CPVL MUTATED CPVL WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" "CPVL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPVL MUTATED        1      0      1      0      1
  CPVL WILD-TYPE     25     20     27     25     19
D497V5, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            0             25
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPVL MUTATED        0      3      0
  CPVL WILD-TYPE     48     50     18
D497V6, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            0             48
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPVL MUTATED        2      1      0      0      0
  CPVL WILD-TYPE     35     30     17     21     13
D497V7, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            0             21
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPVL MUTATED        3      0      0
  CPVL WILD-TYPE     68     27     21
D497V8, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPVL MUTATED        0      1      0      0      1      1      0
  CPVL WILD-TYPE     18      7     10      8     35     24     12
D497V9, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPVL MUTATED        1      1      1      0      0      0
  CPVL WILD-TYPE     16     31     12     32     16      7
D497V10, multiclass
        clus
vv       CPVL MUTATED CPVL WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            0             32
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(498) Variable = AGAP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        0      2      2      1
  AGAP6 WILD-TYPE     19     51     28     23
D498V1, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        2      2      1      0
  AGAP6 WILD-TYPE     33     28     33     26
D498V2, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        0      1      1      2      0
  AGAP6 WILD-TYPE     29     17     12      7     13
D498V3, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        1      1      0      1      1
  AGAP6 WILD-TYPE     31     17     12      9      9
D498V4, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        0      0      1      4      0
  AGAP6 WILD-TYPE     26     20     27     21     20
D498V5, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             4              21
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        4      1      0
  AGAP6 WILD-TYPE     44     52     18
D498V6, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        1      0      3      1      0
  AGAP6 WILD-TYPE     36     31     14     20     13
D498V7, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             3              14
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        3      2      0
  AGAP6 WILD-TYPE     68     25     21
D498V8, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGAP6 MUTATED        1      0      1      0      3      0      0
  AGAP6 WILD-TYPE     17      8      9      8     33     25     12
D498V9, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AGAP6 MUTATED        0      1      0      4      0      0
  AGAP6 WILD-TYPE     17     31     13     28     16      7
D498V10, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             4              28
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(499) Variable = MMP13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        1      1      1      1
  MMP13 WILD-TYPE     18     52     29     23
D499V1, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        2      0      1      1
  MMP13 WILD-TYPE     33     30     33     25
D499V2, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP13 MUTATED        1      0      1      1      0
  MMP13 WILD-TYPE     28     18     12      8     13
D499V3, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP13 MUTATED        2      0      1      0      0
  MMP13 WILD-TYPE     30     18     11     10     10
D499V4, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP13 MUTATED        0      0      1      2      1
  MMP13 WILD-TYPE     26     20     27     23     19
D499V5, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        3      1      0
  MMP13 WILD-TYPE     45     52     18
D499V6, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP13 MUTATED        0      2      0      2      0
  MMP13 WILD-TYPE     37     29     17     19     13
D499V7, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        4      0      0
  MMP13 WILD-TYPE     67     27     21
D499V8, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP13 MUTATED        1      0      1      1      0      1      0
  MMP13 WILD-TYPE     17      8      9      7     36     24     12
D499V9, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP13 MUTATED        0      1      1      2      0      0
  MMP13 WILD-TYPE     17     31     12     30     16      7
D499V10, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(500) Variable = BCL11A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL11A MUTATED        0      4      1      1
  BCL11A WILD-TYPE     19     49     29     23
D500V1, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              0               19
  CLUS_2              4               49
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL11A MUTATED        2      2      2      0
  BCL11A WILD-TYPE     33     28     32     26
D500V2, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               28
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL11A MUTATED        1      1      1      0      1
  BCL11A WILD-TYPE     28     17     12      9     12
D500V3, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL11A MUTATED        1      1      0      1      1
  BCL11A WILD-TYPE     31     17     12      9      9
D500V4, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL11A MUTATED        1      0      2      3      0
  BCL11A WILD-TYPE     25     20     26     22     20
D500V5, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11A MUTATED        4      2      0
  BCL11A WILD-TYPE     44     51     18
D500V6, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              4               44
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL11A MUTATED        1      1      2      2      0
  BCL11A WILD-TYPE     36     30     15     19     13
D500V7, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              2               15
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11A MUTATED        3      3      0
  BCL11A WILD-TYPE     68     24     21
D500V8, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              3               68
  CLUS_2              3               24
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL11A MUTATED        1      0      2      0      1      2      0
  BCL11A WILD-TYPE     17      8      8      8     35     23     12
D500V9, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL11A MUTATED        0      3      0      3      0      0
  BCL11A WILD-TYPE     17     29     13     29     16      7
D500V10, multiclass
        clus
vv       BCL11A MUTATED BCL11A WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(501) Variable = ZNF207 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF207 MUTATED        1      1      2      0
  ZNF207 WILD-TYPE     18     52     28     24
D501V1, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF207 MUTATED        1      1      0      2
  ZNF207 WILD-TYPE     34     29     34     24
D501V2, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        1      0      0      1      1
  ZNF207 WILD-TYPE     28     18     13      8     12
D501V3, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        2      1      0      0      0
  ZNF207 WILD-TYPE     30     17     12     10     10
D501V4, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        0      1      0      1      2
  ZNF207 WILD-TYPE     26     19     28     24     18
D501V5, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF207 MUTATED        2      2      0
  ZNF207 WILD-TYPE     46     51     18
D501V6, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        1      2      0      1      0
  ZNF207 WILD-TYPE     36     29     17     20     13
D501V7, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF207 MUTATED        4      0      0
  ZNF207 WILD-TYPE     67     27     21
D501V8, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF207 MUTATED        1      0      1      2      0      0      0
  ZNF207 WILD-TYPE     17      8      9      6     36     25     12
D501V9, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              2                6
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF207 MUTATED        1      0      2      1      0      0
  ZNF207 WILD-TYPE     16     32     11     31     16      7
D501V10, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              2               11
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(502) Variable = CCDC55 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        0      2      0      1
  CCDC55 WILD-TYPE     19     51     30     23
D502V1, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              0               30
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        0      2      1      0
  CCDC55 WILD-TYPE     35     28     33     26
D502V2, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              2               28
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC55 MUTATED        0      0      1      0      0
  CCDC55 WILD-TYPE     29     18     12      9     13
D502V3, multiclass
[1] "Remove cluster labels:" "CCDC55 MUTATED"        
clus
  CCDC55 MUTATED CCDC55 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-Z5-AAPL 
"CCDC55 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC55 MUTATED        0      0      1      0      0
  CCDC55 WILD-TYPE     32     18     11     10     10
D502V4, multiclass
[1] "Remove cluster labels:" "CCDC55 MUTATED"        
clus
  CCDC55 MUTATED CCDC55 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-Z5-AAPL 
"CCDC55 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC55 MUTATED        0      1      1      1      0
  CCDC55 WILD-TYPE     26     19     27     24     20
D502V5, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC55 MUTATED        2      0      1
  CCDC55 WILD-TYPE     46     53     17
D502V6, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              0               53
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC55 MUTATED        1      0      1      1      0
  CCDC55 WILD-TYPE     36     31     16     20     13
D502V7, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC55 MUTATED        1      1      1
  CCDC55 WILD-TYPE     70     26     20
D502V8, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC55 MUTATED        0      0      0      0      2      0      1
  CCDC55 WILD-TYPE     18      8     10      8     34     25     11
D502V9, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC55 MUTATED        0      0      0      2      0      1
  CCDC55 WILD-TYPE     17     32     13     30     16      6
D502V10, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(503) Variable = ORAI3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORAI3 MUTATED        0      0      0      3
  ORAI3 WILD-TYPE     19     53     30     21
D503V1, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             0              53
  CLUS_3             0              30
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORAI3 MUTATED        1      0      1      1
  ORAI3 WILD-TYPE     34     30     33     25
D503V2, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORAI3 MUTATED        3      0      0      0      0
  ORAI3 WILD-TYPE     26     18     13      9     13
D503V3, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORAI3 MUTATED        3      0      0      0      0
  ORAI3 WILD-TYPE     29     18     12     10     10
D503V4, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORAI3 MUTATED        0      2      0      0      1
  ORAI3 WILD-TYPE     26     18     28     25     19
D503V5, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             0              28
  CLUS_4             0              25
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORAI3 MUTATED        0      2      1
  ORAI3 WILD-TYPE     48     51     17
D503V6, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORAI3 MUTATED        1      1      0      0      1
  ORAI3 WILD-TYPE     36     30     17     21     12
D503V7, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORAI3 MUTATED        2      0      1
  ORAI3 WILD-TYPE     69     27     20
D503V8, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ORAI3 MUTATED        0      0      0      0      0      3      0
  ORAI3 WILD-TYPE     18      8     10      8     36     22     12
D503V9, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ORAI3 MUTATED        0      1      1      0      1      0
  ORAI3 WILD-TYPE     17     31     12     32     15      7
D503V10, multiclass
        clus
vv       ORAI3 MUTATED ORAI3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(504) Variable = LAMA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA1 MUTATED        2      4      1      1
  LAMA1 WILD-TYPE     17     49     29     23
D504V1, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA1 MUTATED        4      1      2      0
  LAMA1 WILD-TYPE     31     29     32     26
D504V2, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA1 MUTATED        3      1      1      1      0
  LAMA1 WILD-TYPE     26     17     12      8     13
D504V3, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA1 MUTATED        3      1      1      1      0
  LAMA1 WILD-TYPE     29     17     11      9     10
D504V4, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA1 MUTATED        3      2      1      1      0
  LAMA1 WILD-TYPE     23     18     27     24     20
D504V5, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA1 MUTATED        4      2      1
  LAMA1 WILD-TYPE     44     51     17
D504V6, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA1 MUTATED        2      0      1      3      1
  LAMA1 WILD-TYPE     35     31     16     18     12
D504V7, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             3              18
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA1 MUTATED        5      0      2
  LAMA1 WILD-TYPE     66     27     19
D504V8, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAMA1 MUTATED        1      0      2      0      3      1      0
  LAMA1 WILD-TYPE     17      8      8      8     33     24     12
D504V9, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LAMA1 MUTATED        3      0      1      1      1      1
  LAMA1 WILD-TYPE     14     32     12     31     15      6
D504V10, multiclass
        clus
vv       LAMA1 MUTATED LAMA1 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(505) Variable = AFAP1L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFAP1L2 MUTATED        1      0      2      1
  AFAP1L2 WILD-TYPE     18     53     28     23
D505V1, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               0                53
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFAP1L2 MUTATED        2      1      1      0
  AFAP1L2 WILD-TYPE     33     29     33     26
D505V2, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFAP1L2 MUTATED        1      0      0      1      0
  AFAP1L2 WILD-TYPE     28     18     13      8     13
D505V3, multiclass
[1] "Remove cluster labels:" "AFAP1L2 MUTATED"       
clus
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A8F3 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFAP1L2 MUTATED        2      0      0      0      0
  AFAP1L2 WILD-TYPE     30     18     12     10     10
D505V4, multiclass
[1] "Remove cluster labels:" "AFAP1L2 MUTATED"       
clus
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A8F3 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFAP1L2 MUTATED        1      1      1      1      0
  AFAP1L2 WILD-TYPE     25     19     27     24     20
D505V5, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AFAP1L2 MUTATED        1      2      1
  AFAP1L2 WILD-TYPE     47     51     17
D505V6, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               2                51
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFAP1L2 MUTATED        1      0      0      3      0
  AFAP1L2 WILD-TYPE     36     31     17     18     13
D505V7, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AFAP1L2 MUTATED        3      0      1
  AFAP1L2 WILD-TYPE     68     27     20
D505V8, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AFAP1L2 MUTATED        0      0      1      0      1      0      1
  AFAP1L2 WILD-TYPE     18      8      9      8     35     25     11
D505V9, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AFAP1L2 MUTATED        0      1      0      1      0      1
  AFAP1L2 WILD-TYPE     17     31     13     31     16      6
D505V10, multiclass
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(506) Variable = ATXN2L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN2L MUTATED        0      1      2      1
  ATXN2L WILD-TYPE     19     52     28     23
D506V1, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN2L MUTATED        2      0      2      0
  ATXN2L WILD-TYPE     33     30     32     26
D506V2, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        1      0      0      1      0
  ATXN2L WILD-TYPE     28     18     13      8     13
D506V3, multiclass
[1] "Remove cluster labels:" "ATXN2L MUTATED"        
clus
  ATXN2L MUTATED ATXN2L WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        2      0      0      0      0
  ATXN2L WILD-TYPE     30     18     12     10     10
D506V4, multiclass
[1] "Remove cluster labels:" "ATXN2L MUTATED"        
clus
  ATXN2L MUTATED ATXN2L WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" "ATXN2L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        2      0      1      1      0
  ATXN2L WILD-TYPE     24     20     27     24     20
D506V5, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN2L MUTATED        2      2      0
  ATXN2L WILD-TYPE     46     51     18
D506V6, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        0      0      1      3      0
  ATXN2L WILD-TYPE     37     31     16     18     13
D506V7, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              0               37
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              3               18
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN2L MUTATED        4      0      0
  ATXN2L WILD-TYPE     67     27     21
D506V8, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATXN2L MUTATED        0      0      1      0      2      0      0
  ATXN2L WILD-TYPE     18      8      9      8     34     25     12
D506V9, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATXN2L MUTATED        1      0      1      1      0      0
  ATXN2L WILD-TYPE     16     32     12     31     16      7
D506V10, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(507) Variable = BECN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BECN1 MUTATED        0      3      0      0
  BECN1 WILD-TYPE     19     50     30     24
D507V1, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BECN1 MUTATED        2      0      1      0
  BECN1 WILD-TYPE     33     30     33     26
D507V2, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BECN1 MUTATED        2      1      0      0      0
  BECN1 WILD-TYPE     27     17     13      9     13
D507V3, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             0               9
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BECN1 MUTATED        1      1      0      1      0
  BECN1 WILD-TYPE     31     17     12      9     10
D507V4, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BECN1 MUTATED        3      0      0      0      0
  BECN1 WILD-TYPE     23     20     28     25     20
D507V5, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             0              25
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BECN1 MUTATED        0      3      0
  BECN1 WILD-TYPE     48     50     18
D507V6, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BECN1 MUTATED        2      0      0      1      0
  BECN1 WILD-TYPE     35     31     17     20     13
D507V7, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BECN1 MUTATED        3      0      0
  BECN1 WILD-TYPE     68     27     21
D507V8, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BECN1 MUTATED        0      0      0      0      2      1      0
  BECN1 WILD-TYPE     18      8     10      8     34     24     12
D507V9, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BECN1 MUTATED        0      2      1      0      0      0
  BECN1 WILD-TYPE     17     30     12     32     16      7
D507V10, multiclass
        clus
vv       BECN1 MUTATED BECN1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             0              32
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(508) Variable = MAP3K7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K7 MUTATED        0      0      4      0
  MAP3K7 WILD-TYPE     19     53     26     24
D508V1, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              4               26
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K7 MUTATED        1      1      0      2
  MAP3K7 WILD-TYPE     34     29     34     24
D508V2, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K7 MUTATED        0      1      0      1      2
  MAP3K7 WILD-TYPE     29     17     13      8     11
D508V3, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K7 MUTATED        1      2      0      0      1
  MAP3K7 WILD-TYPE     31     16     12     10      9
D508V4, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              2               16
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K7 MUTATED        0      0      0      2      2
  MAP3K7 WILD-TYPE     26     20     28     23     18
D508V5, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K7 MUTATED        2      1      1
  MAP3K7 WILD-TYPE     46     52     17
D508V6, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K7 MUTATED        0      3      0      1      0
  MAP3K7 WILD-TYPE     37     28     17     20     13
D508V7, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              3               28
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K7 MUTATED        2      1      1
  MAP3K7 WILD-TYPE     69     26     20
D508V8, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP3K7 MUTATED        0      0      1      2      0      1      0
  MAP3K7 WILD-TYPE     18      8      9      6     36     24     12
D508V9, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              2                6
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP3K7 MUTATED        0      0      1      2      1      0
  MAP3K7 WILD-TYPE     17     32     12     30     15      7
D508V10, multiclass
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(509) Variable = HVCN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HVCN1 MUTATED        0      3      1      0
  HVCN1 WILD-TYPE     19     50     29     24
D509V1, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HVCN1 MUTATED        0      1      3      0
  HVCN1 WILD-TYPE     35     29     31     26
D509V2, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HVCN1 MUTATED        0      0      2      0      0
  HVCN1 WILD-TYPE     29     18     11      9     13
D509V3, multiclass
[1] "Remove cluster labels:" "HVCN1 MUTATED"         
clus
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IH 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-S4-A8RO      TCGA-US-A776 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HVCN1 MUTATED        0      0      1      0      1
  HVCN1 WILD-TYPE     32     18     11     10      9
D509V4, multiclass
[1] "Remove cluster labels:" "HVCN1 MUTATED"         
clus
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IH 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-S4-A8RO      TCGA-US-A776 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HVCN1 MUTATED        0      1      3      0      0
  HVCN1 WILD-TYPE     26     19     25     25     20
D509V5, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             3              25
  CLUS_4             0              25
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        1      2      1
  HVCN1 WILD-TYPE     47     51     17
D509V6, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HVCN1 MUTATED        2      1      0      0      1
  HVCN1 WILD-TYPE     35     30     17     21     12
D509V7, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        3      0      1
  HVCN1 WILD-TYPE     68     27     20
D509V8, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HVCN1 MUTATED        0      2      0      0      0      2      0
  HVCN1 WILD-TYPE     18      6     10      8     36     23     12
D509V9, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2               6
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HVCN1 MUTATED        1      2      0      0      1      0
  HVCN1 WILD-TYPE     16     30     13     32     15      7
D509V10, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             0              32
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(510) Variable = AKAP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        0      0      4      1
  AKAP11 WILD-TYPE     19     53     26     23
D510V1, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              4               26
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        3      1      0      1
  AKAP11 WILD-TYPE     32     29     34     25
D510V2, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      1      1      1      0
  AKAP11 WILD-TYPE     28     17     12      8     13
D510V3, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        2      1      0      0      1
  AKAP11 WILD-TYPE     30     17     12     10      9
D510V4, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      0      1      2      1
  AKAP11 WILD-TYPE     25     20     27     23     19
D510V5, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED        2      3      0
  AKAP11 WILD-TYPE     46     50     18
D510V6, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      1      1      2      0
  AKAP11 WILD-TYPE     36     30     16     19     13
D510V7, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED        4      1      0
  AKAP11 WILD-TYPE     67     26     21
D510V8, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKAP11 MUTATED        1      0      1      0      1      1      0
  AKAP11 WILD-TYPE     17      8      9      8     35     24     12
D510V9, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP11 MUTATED        0      1      0      2      1      0
  AKAP11 WILD-TYPE     17     31     13     30     15      7
D510V10, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(511) Variable = ENPP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP7 MUTATED        2      0      2      2
  ENPP7 WILD-TYPE     17     53     28     22
D511V1, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP7 MUTATED        4      1      1      0
  ENPP7 WILD-TYPE     31     29     33     26
D511V2, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENPP7 MUTATED        1      1      2      1      0
  ENPP7 WILD-TYPE     28     17     11      8     13
D511V3, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             2              11
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENPP7 MUTATED        4      0      1      0      0
  ENPP7 WILD-TYPE     28     18     11     10     10
D511V4, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENPP7 MUTATED        2      0      1      1      1
  ENPP7 WILD-TYPE     24     20     27     24     19
D511V5, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        2      3      0
  ENPP7 WILD-TYPE     46     50     18
D511V6, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENPP7 MUTATED        2      2      0      1      0
  ENPP7 WILD-TYPE     35     29     17     20     13
D511V7, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP7 MUTATED        5      0      0
  ENPP7 WILD-TYPE     66     27     21
D511V8, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             5              66
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENPP7 MUTATED        1      1      1      0      0      2      0
  ENPP7 WILD-TYPE     17      7      9      8     36     23     12
D511V9, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENPP7 MUTATED        1      2      1      1      0      0
  ENPP7 WILD-TYPE     16     30     12     31     16      7
D511V10, multiclass
        clus
vv       ENPP7 MUTATED ENPP7 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(512) Variable = UNC5D MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC5D MUTATED        1      1      2      0
  UNC5D WILD-TYPE     18     52     28     24
D512V1, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC5D MUTATED        2      1      1      0
  UNC5D WILD-TYPE     33     29     33     26
D512V2, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5D MUTATED        2      1      0      1      0
  UNC5D WILD-TYPE     27     17     13      8     13
D512V3, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5D MUTATED        3      1      0      0      0
  UNC5D WILD-TYPE     29     17     12     10     10
D512V4, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5D MUTATED        0      0      1      3      0
  UNC5D WILD-TYPE     26     20     27     22     20
D512V5, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC5D MUTATED        3      1      0
  UNC5D WILD-TYPE     45     52     18
D512V6, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC5D MUTATED        2      1      0      1      0
  UNC5D WILD-TYPE     35     30     17     20     13
D512V7, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC5D MUTATED        3      1      0
  UNC5D WILD-TYPE     68     26     21
D512V8, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UNC5D MUTATED        0      0      1      1      2      0      0
  UNC5D WILD-TYPE     18      8      9      7     34     25     12
D512V9, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UNC5D MUTATED        0      1      0      3      0      0
  UNC5D WILD-TYPE     17     31     13     29     16      7
D512V10, multiclass
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(513) Variable = TTF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        1      2      1      0
  TTF1 WILD-TYPE     18     51     29     24
D513V1, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        2      1      0      1
  TTF1 WILD-TYPE     33     29     34     25
D513V2, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        1      0      0      1      0
  TTF1 WILD-TYPE     28     18     13      8     13
D513V3, multiclass
[1] "Remove cluster labels:" "TTF1 MUTATED"          
clus
  TTF1 MUTATED TTF1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        2      0      0      0      0
  TTF1 WILD-TYPE     30     18     12     10     10
D513V4, multiclass
[1] "Remove cluster labels:" "TTF1 MUTATED"          
clus
  TTF1 MUTATED TTF1 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FZ-5926     TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        0      0      2      2      0
  TTF1 WILD-TYPE     26     20     26     23     20
D513V5, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        2      2      0
  TTF1 WILD-TYPE     46     51     18
D513V6, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        1      0      1      2      0
  TTF1 WILD-TYPE     36     31     16     19     13
D513V7, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        3      1      0
  TTF1 WILD-TYPE     68     26     21
D513V8, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTF1 MUTATED        0      1      2      0      1      0      0
  TTF1 WILD-TYPE     18      7      8      8     35     25     12
D513V9, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            2              8
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TTF1 MUTATED        1      1      0      2      0      0
  TTF1 WILD-TYPE     16     31     13     30     16      7
D513V10, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(514) Variable = CD93 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        1      3      1      0
  CD93 WILD-TYPE     18     50     29     24
D514V1, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            3             50
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        2      1      1      1
  CD93 WILD-TYPE     33     29     33     25
D514V2, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        1      0      0      2      0
  CD93 WILD-TYPE     28     18     13      7     13
D514V3, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        2      0      0      1      0
  CD93 WILD-TYPE     30     18     12      9     10
D514V4, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        0      1      1      2      1
  CD93 WILD-TYPE     26     19     27     23     19
D514V5, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        2      2      1
  CD93 WILD-TYPE     46     51     17
D514V6, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        1      1      1      2      0
  CD93 WILD-TYPE     36     30     16     19     13
D514V7, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        4      0      1
  CD93 WILD-TYPE     67     27     20
D514V8, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD93 MUTATED        0      0      1      1      2      0      1
  CD93 WILD-TYPE     18      8      9      7     34     25     11
D514V9, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD93 MUTATED        0      1      1      2      0      1
  CD93 WILD-TYPE     17     31     12     30     16      6
D514V10, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(515) Variable = CEACAM8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM8 MUTATED        0      2      0      1
  CEACAM8 WILD-TYPE     19     51     30     23
D515V1, multiclass
        clus
vv       CEACAM8 MUTATED CEACAM8 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               0                30
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM8 MUTATED        3      0      0      0
  CEACAM8 WILD-TYPE     32     30     34     26
D515V2, multiclass
        clus
vv       CEACAM8 MUTATED CEACAM8 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                30
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM8 MUTATED        3      0      0      0      0
  CEACAM8 WILD-TYPE     26     18     13      9     13
D515V3, multiclass
        clus
vv       CEACAM8 MUTATED CEACAM8 WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               0                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM8 MUTATED        2      0      0      1      0
  CEACAM8 WILD-TYPE     30     18     12      9     10
D515V4, multiclass
        clus
vv       CEACAM8 MUTATED CEACAM8 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM8 MUTATED        2      0      0      0      0
  CEACAM8 WILD-TYPE     24     20     28     25     20
D515V5, multiclass
[1] "Remove cluster labels:" "CEACAM8 MUTATED"       
clus
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                2               117 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2J-AABV 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQE        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IL        TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9J0        TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPQ        TCGA-FB-AAPS        TCGA-FB-AAPU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ3        TCGA-FB-AAQ6        TCGA-H8-A6C1        TCGA-HV-A7OL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HV-A7OP        TCGA-HV-AA8V        TCGA-HV-AA8X        TCGA-HZ-7918 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-8637        TCGA-HZ-A49I        TCGA-HZ-A77O 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A77P        TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A9TJ        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-RL-AAAS        TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Z5-AAPL 
"CEACAM8 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM8 MUTATED        0      2      0
  CEACAM8 WILD-TYPE     48     51     18
D515V6, multiclass
[1] "Remove cluster labels:" "CEACAM8 MUTATED"       
clus
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                2               117 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2J-AABV 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQE        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IL        TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9J0        TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPQ        TCGA-FB-AAPS        TCGA-FB-AAPU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ3        TCGA-FB-AAQ6        TCGA-H8-A6C1        TCGA-HV-A7OL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HV-A7OP        TCGA-HV-AA8V        TCGA-HV-AA8X        TCGA-HZ-7918 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-8637        TCGA-HZ-A49I        TCGA-HZ-A77O 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A77P        TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A9TJ        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-RL-AAAS        TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Z5-AAPL 
"CEACAM8 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM8 MUTATED        1      0      0      1      0
  CEACAM8 WILD-TYPE     36     31     17     20     13
D515V7, multiclass
[1] "Remove cluster labels:" "CEACAM8 MUTATED"       
clus
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                2               117 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2J-AABV 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQE        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IL        TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9J0        TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPQ        TCGA-FB-AAPS        TCGA-FB-AAPU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ3        TCGA-FB-AAQ6        TCGA-H8-A6C1        TCGA-HV-A7OL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HV-A7OP        TCGA-HV-AA8V        TCGA-HV-AA8X        TCGA-HZ-7918 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-8637        TCGA-HZ-A49I        TCGA-HZ-A77O 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A77P        TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A9TJ        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-RL-AAAS        TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Z5-AAPL 
"CEACAM8 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM8 MUTATED        2      0      0
  CEACAM8 WILD-TYPE     69     27     21
D515V8, multiclass
[1] "Remove cluster labels:" "CEACAM8 MUTATED"       
clus
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                2               117 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2J-AABV 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQE        TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IB        TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IL        TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9J0        TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPQ        TCGA-FB-AAPS        TCGA-FB-AAPU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ3        TCGA-FB-AAQ6        TCGA-H8-A6C1        TCGA-HV-A7OL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HV-A7OP        TCGA-HV-AA8V        TCGA-HV-AA8X        TCGA-HZ-7918 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-8637        TCGA-HZ-A49I        TCGA-HZ-A77O 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A77P        TCGA-HZ-A77Q        TCGA-HZ-A8P0        TCGA-HZ-A8P1 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A9TJ        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A6UG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUQ        TCGA-IB-AAUR 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-RL-AAAS        TCGA-S4-A8RO        TCGA-US-A776        TCGA-US-A779 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J        TCGA-XD-AAUG 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-Z5-AAPL 
"CEACAM8 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEACAM8 MUTATED        0      0      0      0      2      0      0
  CEACAM8 WILD-TYPE     18      8     10      8     34     25     12
D515V9, multiclass
[1] "Remove cluster labels:" "CEACAM8 MUTATED"       
clus
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                2               115 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2L-AAQE 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL        TCGA-2L-AAQM 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9        TCGA-3A-A9IB 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ        TCGA-3A-A9IL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS        TCGA-3A-A9IU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3A-A9J0 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273        TCGA-F2-A44G 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAPQ        TCGA-FB-AAPS        TCGA-FB-AAPU        TCGA-FB-AAPZ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2        TCGA-FB-AAQ3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-H8-A6C1        TCGA-HV-A7OL        TCGA-HV-AA8V 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HV-AA8X        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-HZ-8637 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A49I        TCGA-HZ-A77O        TCGA-HZ-A77P        TCGA-HZ-A77Q 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ        TCGA-IB-7651 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX        TCGA-IB-A7M4 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS        TCGA-IB-AAUU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-RL-AAAS        TCGA-S4-A8RO 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUG        TCGA-XD-AAUH        TCGA-XD-AAUI 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XD-AAUL        TCGA-XN-A8T3        TCGA-XN-A8T5        TCGA-YB-A89D 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEACAM8 MUTATED        0      1      1      0      0      0
  CEACAM8 WILD-TYPE     17     31     12     32     16      7
D515V10, multiclass
[1] "Remove cluster labels:" "CEACAM8 MUTATED"       
clus
  CEACAM8 MUTATED CEACAM8 WILD-TYPE 
                2               115 
       TCGA-2J-AAB1        TCGA-2J-AAB4        TCGA-2J-AAB6        TCGA-2J-AAB8 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AAB9        TCGA-2J-AABA        TCGA-2J-AABE        TCGA-2J-AABF 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO        TCGA-2J-AABP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2J-AABT        TCGA-2J-AABU        TCGA-2L-AAQE 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-2L-AAQI        TCGA-2L-AAQJ        TCGA-2L-AAQL        TCGA-2L-AAQM 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9I5        TCGA-3A-A9I7        TCGA-3A-A9I9        TCGA-3A-A9IB 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IC        TCGA-3A-A9IH        TCGA-3A-A9IJ        TCGA-3A-A9IL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IO        TCGA-3A-A9IR        TCGA-3A-A9IS        TCGA-3A-A9IU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3A-A9IV        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3A-A9J0 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-3E-AAAY        TCGA-3E-AAAZ        TCGA-F2-7273        TCGA-F2-A44G 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-F2-A7TX        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAPQ        TCGA-FB-AAPS        TCGA-FB-AAPU        TCGA-FB-AAPZ 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ0        TCGA-FB-AAQ1        TCGA-FB-AAQ2        TCGA-FB-AAQ3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-H8-A6C1        TCGA-HV-A7OL        TCGA-HV-AA8V 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HV-AA8X        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-HZ-8637 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A49I        TCGA-HZ-A77O        TCGA-HZ-A77P        TCGA-HZ-A77Q 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-HZ-A8P0        TCGA-HZ-A8P1        TCGA-HZ-A9TJ        TCGA-IB-7651 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A6UG        TCGA-IB-A7LX        TCGA-IB-A7M4 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUQ        TCGA-IB-AAUR        TCGA-IB-AAUS        TCGA-IB-AAUU 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-RL-AAAS        TCGA-S4-A8RO 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUG        TCGA-XD-AAUH        TCGA-XD-AAUI 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-XD-AAUL        TCGA-XN-A8T3        TCGA-XN-A8T5        TCGA-YB-A89D 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 
       TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" "CEACAM8 WILD-TYPE" 

Clustering(516) Variable = PARP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED        0      2      2      0
  PARP1 WILD-TYPE     19     51     28     24
D516V1, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED        1      2      1      0
  PARP1 WILD-TYPE     34     28     33     26
D516V2, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP1 MUTATED        0      0      1      1      1
  PARP1 WILD-TYPE     29     18     12      8     12
D516V3, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP1 MUTATED        1      0      1      0      1
  PARP1 WILD-TYPE     31     18     11     10      9
D516V4, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP1 MUTATED        0      1      1      2      0
  PARP1 WILD-TYPE     26     19     27     23     20
D516V5, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARP1 MUTATED        3      0      1
  PARP1 WILD-TYPE     45     53     17
D516V6, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             0              53
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP1 MUTATED        1      0      1      1      1
  PARP1 WILD-TYPE     36     31     16     20     12
D516V7, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARP1 MUTATED        2      1      1
  PARP1 WILD-TYPE     69     26     20
D516V8, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARP1 MUTATED        0      0      1      0      2      1      0
  PARP1 WILD-TYPE     18      8      9      8     34     24     12
D516V9, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PARP1 MUTATED        0      1      0      2      1      0
  PARP1 WILD-TYPE     17     31     13     30     15      7
D516V10, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(517) Variable = CRNN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRNN MUTATED        3      4      1      2
  CRNN WILD-TYPE     16     49     29     22
D517V1, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            3             16
  CLUS_2            4             49
  CLUS_3            1             29
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRNN MUTATED        5      2      3      0
  CRNN WILD-TYPE     30     28     31     26
D517V2, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            5             30
  CLUS_2            2             28
  CLUS_3            3             31
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRNN MUTATED        3      0      2      2      0
  CRNN WILD-TYPE     26     18     11      7     13
D517V3, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            3             26
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRNN MUTATED        6      0      1      0      0
  CRNN WILD-TYPE     26     18     11     10     10
D517V4, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            6             26
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRNN MUTATED        4      2      2      2      0
  CRNN WILD-TYPE     22     18     26     23     20
D517V5, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            4             22
  CLUS_2            2             18
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRNN MUTATED        6      4      0
  CRNN WILD-TYPE     42     49     18
D517V6, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            6             42
  CLUS_2            4             49
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRNN MUTATED        3      1      2      2      2
  CRNN WILD-TYPE     34     30     15     19     11
D517V7, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            2             15
  CLUS_4            2             19
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRNN MUTATED        7      3      0
  CRNN WILD-TYPE     64     24     21
D517V8, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            7             64
  CLUS_2            3             24
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CRNN MUTATED        5      1      1      0      3      0      0
  CRNN WILD-TYPE     13      7      9      8     33     25     12
D517V9, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            5             13
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            3             33
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRNN MUTATED        3      2      1      4      0      0
  CRNN WILD-TYPE     14     30     12     28     16      7
D517V10, multiclass
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  CLUS_1            3             14
  CLUS_2            2             30
  CLUS_3            1             12
  CLUS_4            4             28
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(518) Variable = ZNF254 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF254 MUTATED        0      3      2      0
  ZNF254 WILD-TYPE     19     50     28     24
D518V1, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF254 MUTATED        1      0      2      2
  ZNF254 WILD-TYPE     34     30     32     24
D518V2, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF254 MUTATED        0      0      0      1      2
  ZNF254 WILD-TYPE     29     18     13      8     11
D518V3, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF254 MUTATED        1      0      1      0      1
  ZNF254 WILD-TYPE     31     18     11     10      9
D518V4, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF254 MUTATED        0      1      2      1      1
  ZNF254 WILD-TYPE     26     19     26     24     19
D518V5, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF254 MUTATED        3      2      0
  ZNF254 WILD-TYPE     45     51     18
D518V6, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF254 MUTATED        2      1      0      1      1
  ZNF254 WILD-TYPE     35     30     17     20     12
D518V7, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF254 MUTATED        4      1      0
  ZNF254 WILD-TYPE     67     26     21
D518V8, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF254 MUTATED        0      1      1      0      2      1      0
  ZNF254 WILD-TYPE     18      7      9      8     34     24     12
D518V9, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF254 MUTATED        1      2      0      1      1      0
  ZNF254 WILD-TYPE     16     30     13     31     15      7
D518V10, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(519) Variable = ADAM30 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        1      1      1      0
  ADAM30 WILD-TYPE     18     52     29     24
D519V1, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        2      1      0      0
  ADAM30 WILD-TYPE     33     29     34     26
D519V2, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        1      0      0      0      0
  ADAM30 WILD-TYPE     28     18     13      9     13
D519V3, multiclass
[1] "Remove cluster labels:" "ADAM30 MUTATED"        
clus
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-Z5-AAPL 
"ADAM30 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        1      0      0      0      0
  ADAM30 WILD-TYPE     31     18     12     10     10
D519V4, multiclass
[1] "Remove cluster labels:" "ADAM30 MUTATED"        
clus
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-Z5-AAPL 
"ADAM30 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        1      0      1      1      0
  ADAM30 WILD-TYPE     25     20     27     24     20
D519V5, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        1      2      0
  ADAM30 WILD-TYPE     47     51     18
D519V6, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        1      0      1      0      1
  ADAM30 WILD-TYPE     36     31     16     21     12
D519V7, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        2      1      0
  ADAM30 WILD-TYPE     69     26     21
D519V8, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM30 MUTATED        1      0      1      0      1      0      0
  ADAM30 WILD-TYPE     17      8      9      8     35     25     12
D519V9, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAM30 MUTATED        1      1      0      1      0      0
  ADAM30 WILD-TYPE     16     31     13     31     16      7
D519V10, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(520) Variable = DRD5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD5 MUTATED        0      4      0      0
  DRD5 WILD-TYPE     19     49     30     24
D520V1, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            4             49
  CLUS_3            0             30
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD5 MUTATED        2      0      2      0
  DRD5 WILD-TYPE     33     30     32     26
D520V2, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DRD5 MUTATED        1      1      1      0      0
  DRD5 WILD-TYPE     28     17     12      9     13
D520V3, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            0              9
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DRD5 MUTATED        0      1      1      1      0
  DRD5 WILD-TYPE     32     17     11      9     10
D520V4, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            0             32
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DRD5 MUTATED        2      0      2      0      0
  DRD5 WILD-TYPE     24     20     26     25     20
D520V5, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            0             25
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DRD5 MUTATED        2      2      0
  DRD5 WILD-TYPE     46     51     18
D520V6, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DRD5 MUTATED        2      0      0      1      1
  DRD5 WILD-TYPE     35     31     17     20     12
D520V7, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DRD5 MUTATED        3      0      1
  DRD5 WILD-TYPE     68     27     20
D520V8, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DRD5 MUTATED        0      0      1      0      1      1      1
  DRD5 WILD-TYPE     18      8      9      8     35     24     11
D520V9, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DRD5 MUTATED        1      1      1      1      0      0
  DRD5 WILD-TYPE     16     31     12     31     16      7
D520V10, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(521) Variable = MKI67IP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67IP MUTATED        0      2      1      1
  MKI67IP WILD-TYPE     19     51     29     23
D521V1, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67IP MUTATED        2      0      1      1
  MKI67IP WILD-TYPE     33     30     33     25
D521V2, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67IP MUTATED        0      1      0      1      0
  MKI67IP WILD-TYPE     29     17     13      8     13
D521V3, multiclass
[1] "Remove cluster labels:" "MKI67IP MUTATED"       
clus
  MKI67IP MUTATED MKI67IP WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-AAUM        TCGA-IB-AAUN 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67IP MUTATED        1      1      0      0      0
  MKI67IP WILD-TYPE     31     17     12     10     10
D521V4, multiclass
[1] "Remove cluster labels:" "MKI67IP MUTATED"       
clus
  MKI67IP MUTATED MKI67IP WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-AAUM        TCGA-IB-AAUN 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" "MKI67IP WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67IP MUTATED        0      0      1      2      1
  MKI67IP WILD-TYPE     26     20     27     23     19
D521V5, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MKI67IP MUTATED        2      2      0
  MKI67IP WILD-TYPE     46     51     18
D521V6, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKI67IP MUTATED        0      2      1      1      0
  MKI67IP WILD-TYPE     37     29     16     20     13
D521V7, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               0                37
  CLUS_2               2                29
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MKI67IP MUTATED        3      1      0
  MKI67IP WILD-TYPE     68     26     21
D521V8, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MKI67IP MUTATED        1      0      1      0      0      2      0
  MKI67IP WILD-TYPE     17      8      9      8     36     23     12
D521V9, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               2                23
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MKI67IP MUTATED        0      1      1      2      0      0
  MKI67IP WILD-TYPE     17     31     12     30     16      7
D521V10, multiclass
        clus
vv       MKI67IP MUTATED MKI67IP WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(522) Variable = SYNPO2L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNPO2L MUTATED        2      2      2      0
  SYNPO2L WILD-TYPE     17     51     28     24
D522V1, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               2                17
  CLUS_2               2                51
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNPO2L MUTATED        2      1      2      1
  SYNPO2L WILD-TYPE     33     29     32     25
D522V2, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               2                32
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNPO2L MUTATED        1      0      1      1      0
  SYNPO2L WILD-TYPE     28     18     12      8     13
D522V3, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               1                28
  CLUS_2               0                18
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNPO2L MUTATED        2      0      0      0      1
  SYNPO2L WILD-TYPE     30     18     12     10      9
D522V4, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               2                30
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNPO2L MUTATED        0      0      2      2      2
  SYNPO2L WILD-TYPE     26     20     26     23     18
D522V5, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               2                26
  CLUS_4               2                23
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNPO2L MUTATED        3      3      0
  SYNPO2L WILD-TYPE     45     50     18
D522V6, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               3                45
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNPO2L MUTATED        2      2      1      1      0
  SYNPO2L WILD-TYPE     35     29     16     20     13
D522V7, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               2                35
  CLUS_2               2                29
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNPO2L MUTATED        4      2      0
  SYNPO2L WILD-TYPE     67     25     21
D522V8, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               4                67
  CLUS_2               2                25
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNPO2L MUTATED        0      0      1      1      3      1      0
  SYNPO2L WILD-TYPE     18      8      9      7     33     24     12
D522V9, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               3                33
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYNPO2L MUTATED        0      2      1      2      1      0
  SYNPO2L WILD-TYPE     17     30     12     30     15      7
D522V10, multiclass
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(523) Variable = PROX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROX1 MUTATED        2      0      2      0
  PROX1 WILD-TYPE     17     53     28     24
D523V1, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROX1 MUTATED        1      0      2      1
  PROX1 WILD-TYPE     34     30     32     25
D523V2, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PROX1 MUTATED        1      1      1      1      0
  PROX1 WILD-TYPE     28     17     12      8     13
D523V3, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PROX1 MUTATED        2      1      0      0      1
  PROX1 WILD-TYPE     30     17     12     10      9
D523V4, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PROX1 MUTATED        1      0      1      1      1
  PROX1 WILD-TYPE     25     20     27     24     19
D523V5, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PROX1 MUTATED        1      3      0
  PROX1 WILD-TYPE     47     50     18
D523V6, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PROX1 MUTATED        2      1      0      1      0
  PROX1 WILD-TYPE     35     30     17     20     13
D523V7, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PROX1 MUTATED        4      0      0
  PROX1 WILD-TYPE     67     27     21
D523V8, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PROX1 MUTATED        0      0      1      0      2      1      0
  PROX1 WILD-TYPE     18      8      9      8     34     24     12
D523V9, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PROX1 MUTATED        0      2      0      1      1      0
  PROX1 WILD-TYPE     17     30     13     31     15      7
D523V10, multiclass
        clus
vv       PROX1 MUTATED PROX1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(524) Variable = KLK15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK15 MUTATED        0      2      4      0
  KLK15 WILD-TYPE     19     51     26     24
D524V1, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             4              26
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK15 MUTATED        3      2      1      0
  KLK15 WILD-TYPE     32     28     33     26
D524V2, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK15 MUTATED        0      1      1      1      0
  KLK15 WILD-TYPE     29     17     12      8     13
D524V3, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK15 MUTATED        1      1      1      0      0
  KLK15 WILD-TYPE     31     17     11     10     10
D524V4, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK15 MUTATED        0      2      1      3      0
  KLK15 WILD-TYPE     26     18     27     22     20
D524V5, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        3      1      2
  KLK15 WILD-TYPE     45     52     16
D524V6, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLK15 MUTATED        0      0      2      2      2
  KLK15 WILD-TYPE     37     31     15     19     11
D524V7, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK15 MUTATED        2      3      1
  KLK15 WILD-TYPE     69     24     20
D524V8, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             3              24
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLK15 MUTATED        2      0      1      0      1      0      2
  KLK15 WILD-TYPE     16      8      9      8     35     25     10
D524V9, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLK15 MUTATED        0      0      1      3      1      1
  KLK15 WILD-TYPE     17     32     12     29     15      6
D524V10, multiclass
        clus
vv       KLK15 MUTATED KLK15 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(525) Variable = C14ORF115 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF115 MUTATED        1      0      1      1
  C14ORF115 WILD-TYPE     18     53     29     23
D525V1, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 1                  18
  CLUS_2                 0                  53
  CLUS_3                 1                  29
  CLUS_4                 1                  23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF115 MUTATED        2      0      1      0
  C14ORF115 WILD-TYPE     33     30     33     26
D525V2, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 2                  33
  CLUS_2                 0                  30
  CLUS_3                 1                  33
  CLUS_4                 0                  26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF115 MUTATED        1      0      0      1      0
  C14ORF115 WILD-TYPE     28     18     13      8     13
D525V3, multiclass
[1] "Remove cluster labels:" "C14ORF115 MUTATED"     
clus
  C14ORF115 MUTATED C14ORF115 WILD-TYPE 
                  2                  80 
         TCGA-2J-AAB4          TCGA-2J-AAB8          TCGA-2J-AAB9 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2J-AABA          TCGA-2J-AABF          TCGA-2J-AABH 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2J-AABK          TCGA-2J-AABO          TCGA-2J-AABR 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2L-AAQA          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-2L-AAQM          TCGA-3A-A9I5 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-3A-A9IB          TCGA-3A-A9IH          TCGA-3A-A9IU 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-3A-A9IX          TCGA-3A-A9IZ          TCGA-3E-AAAZ 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-F2-A44G          TCGA-F2-A8YN          TCGA-FB-A5VM 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-AAPP          TCGA-FB-AAPQ 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FB-AAPZ          TCGA-FB-AAQ1          TCGA-FB-AAQ6 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FZ-5919          TCGA-FZ-5920          TCGA-FZ-5921 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FZ-5922          TCGA-FZ-5923          TCGA-FZ-5924 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FZ-5926          TCGA-H8-A6C1          TCGA-HZ-7918 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-IB-7652          TCGA-IB-7885 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-A5SO          TCGA-IB-A5SP 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-A5SQ          TCGA-IB-A5SS          TCGA-IB-A5ST 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-A6UF          TCGA-IB-A7LX          TCGA-IB-A7M4 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-AAUM          TCGA-IB-AAUN          TCGA-IB-AAUO 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-AAUP          TCGA-IB-AAUS          TCGA-IB-AAUU 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-AAUV          TCGA-IB-AAUW          TCGA-LB-A7SX 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-LB-A8F3          TCGA-LB-A9Q5          TCGA-OE-A75W 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-Q3-A5QY          TCGA-Q3-AA2A          TCGA-RB-A7B8 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-RB-AA9M          TCGA-S4-A8RO          TCGA-US-A776 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77G 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-US-A77J          TCGA-XD-AAUH          TCGA-XD-AAUI 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-XD-AAUL          TCGA-XN-A8T5          TCGA-YH-A8SY 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-YY-A8LH          TCGA-Z5-AAPL 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF115 MUTATED        2      0      0      0      0
  C14ORF115 WILD-TYPE     30     18     12     10     10
D525V4, multiclass
[1] "Remove cluster labels:" "C14ORF115 MUTATED"     
clus
  C14ORF115 MUTATED C14ORF115 WILD-TYPE 
                  2                  80 
         TCGA-2J-AAB4          TCGA-2J-AAB8          TCGA-2J-AAB9 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2J-AABA          TCGA-2J-AABF          TCGA-2J-AABH 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2J-AABK          TCGA-2J-AABO          TCGA-2J-AABR 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2L-AAQA          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-2L-AAQM          TCGA-3A-A9I5 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-3A-A9IB          TCGA-3A-A9IH          TCGA-3A-A9IU 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-3A-A9IX          TCGA-3A-A9IZ          TCGA-3E-AAAZ 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-F2-A44G          TCGA-F2-A8YN          TCGA-FB-A5VM 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-AAPP          TCGA-FB-AAPQ 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FB-AAPZ          TCGA-FB-AAQ1          TCGA-FB-AAQ6 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FZ-5919          TCGA-FZ-5920          TCGA-FZ-5921 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FZ-5922          TCGA-FZ-5923          TCGA-FZ-5924 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-FZ-5926          TCGA-H8-A6C1          TCGA-HZ-7918 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-IB-7652          TCGA-IB-7885 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-A5SO          TCGA-IB-A5SP 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-A5SQ          TCGA-IB-A5SS          TCGA-IB-A5ST 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-A6UF          TCGA-IB-A7LX          TCGA-IB-A7M4 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-AAUM          TCGA-IB-AAUN          TCGA-IB-AAUO 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-AAUP          TCGA-IB-AAUS          TCGA-IB-AAUU 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-IB-AAUV          TCGA-IB-AAUW          TCGA-LB-A7SX 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-LB-A8F3          TCGA-LB-A9Q5          TCGA-OE-A75W 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-Q3-A5QY          TCGA-Q3-AA2A          TCGA-RB-A7B8 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-RB-AA9M          TCGA-S4-A8RO          TCGA-US-A776 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77G 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-US-A77J          TCGA-XD-AAUH          TCGA-XD-AAUI 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-XD-AAUL          TCGA-XN-A8T5          TCGA-YH-A8SY 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
         TCGA-YY-A8LH          TCGA-Z5-AAPL 
"C14ORF115 WILD-TYPE" "C14ORF115 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF115 MUTATED        0      1      0      2      0
  C14ORF115 WILD-TYPE     26     19     28     23     20
D525V5, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 1                  19
  CLUS_3                 0                  28
  CLUS_4                 2                  23
  CLUS_5                 0                  20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF115 MUTATED        2      1      0
  C14ORF115 WILD-TYPE     46     52     18
D525V6, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 2                  46
  CLUS_2                 1                  52
  CLUS_3                 0                  18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF115 MUTATED        2      0      0      1      0
  C14ORF115 WILD-TYPE     35     31     17     20     13
D525V7, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 2                  35
  CLUS_2                 0                  31
  CLUS_3                 0                  17
  CLUS_4                 1                  20
  CLUS_5                 0                  13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF115 MUTATED        3      0      0
  C14ORF115 WILD-TYPE     68     27     21
D525V8, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 3                  68
  CLUS_2                 0                  27
  CLUS_3                 0                  21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF115 MUTATED        0      0      1      0      0      2      0
  C14ORF115 WILD-TYPE     18      8      9      8     36     23     12
D525V9, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 0                  18
  CLUS_2                 0                   8
  CLUS_3                 1                   9
  CLUS_4                 0                   8
  CLUS_5                 0                  36
  CLUS_6                 2                  23
  CLUS_7                 0                  12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF115 MUTATED        0      1      0      2      0      0
  C14ORF115 WILD-TYPE     17     31     13     30     16      7
D525V10, multiclass
        clus
vv       C14ORF115 MUTATED C14ORF115 WILD-TYPE
  CLUS_1                 0                  17
  CLUS_2                 1                  31
  CLUS_3                 0                  13
  CLUS_4                 2                  30
  CLUS_5                 0                  16
  CLUS_6                 0                   7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(526) Variable = SNIP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNIP1 MUTATED        0      1      2      0
  SNIP1 WILD-TYPE     19     52     28     24
D526V1, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNIP1 MUTATED        1      1      1      0
  SNIP1 WILD-TYPE     34     29     33     26
D526V2, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNIP1 MUTATED        1      0      0      1      0
  SNIP1 WILD-TYPE     28     18     13      8     13
D526V3, multiclass
[1] "Remove cluster labels:" "SNIP1 MUTATED"         
clus
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-FB-A5VM      TCGA-FB-A78T 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNIP1 MUTATED        2      0      0      0      0
  SNIP1 WILD-TYPE     30     18     12     10     10
D526V4, multiclass
[1] "Remove cluster labels:" "SNIP1 MUTATED"         
clus
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-FB-A5VM      TCGA-FB-A78T 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNIP1 MUTATED        0      1      1      1      0
  SNIP1 WILD-TYPE     26     19     27     24     20
D526V5, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNIP1 MUTATED        1      1      1
  SNIP1 WILD-TYPE     47     52     17
D526V6, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNIP1 MUTATED        1      0      0      2      0
  SNIP1 WILD-TYPE     36     31     17     19     13
D526V7, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNIP1 MUTATED        2      0      1
  SNIP1 WILD-TYPE     69     27     20
D526V8, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNIP1 MUTATED        0      0      1      0      1      0      1
  SNIP1 WILD-TYPE     18      8      9      8     35     25     11
D526V9, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNIP1 MUTATED        0      1      0      1      0      1
  SNIP1 WILD-TYPE     17     31     13     31     16      6
D526V10, multiclass
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(527) Variable = MAP7D3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        0      3      1      0
  MAP7D3 WILD-TYPE     19     50     29     24
D527V1, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        3      1      0      0
  MAP7D3 WILD-TYPE     32     29     34     26
D527V2, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        0      0      1      2      0
  MAP7D3 WILD-TYPE     29     18     12      7     13
D527V3, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        1      0      1      1      0
  MAP7D3 WILD-TYPE     31     18     11      9     10
D527V4, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        0      1      1      2      0
  MAP7D3 WILD-TYPE     26     19     27     23     20
D527V5, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        3      0      1
  MAP7D3 WILD-TYPE     45     53     17
D527V6, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              0               53
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        1      0      1      2      0
  MAP7D3 WILD-TYPE     36     31     16     19     13
D527V7, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        3      0      1
  MAP7D3 WILD-TYPE     68     27     20
D527V8, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP7D3 MUTATED        0      0      2      0      2      0      0
  MAP7D3 WILD-TYPE     18      8      8      8     34     25     12
D527V9, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7D3 MUTATED        1      0      0      2      0      1
  MAP7D3 WILD-TYPE     16     32     13     30     16      6
D527V10, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(528) Variable = RBM16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        1      1      2      0
  RBM16 WILD-TYPE     18     52     28     24
D528V1, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        1      1      2      0
  RBM16 WILD-TYPE     34     29     32     26
D528V2, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        0      0      0      1      1
  RBM16 WILD-TYPE     29     18     13      8     12
D528V3, multiclass
[1] "Remove cluster labels:" "RBM16 MUTATED"         
clus
  RBM16 MUTATED RBM16 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-LB-A7SX      TCGA-LB-A8F3 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        1      0      1      0      0
  RBM16 WILD-TYPE     31     18     11     10     10
D528V4, multiclass
[1] "Remove cluster labels:" "RBM16 MUTATED"         
clus
  RBM16 MUTATED RBM16 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-LB-A7SX      TCGA-LB-A8F3 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" "RBM16 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        2      0      0      2      0
  RBM16 WILD-TYPE     24     20     28     23     20
D528V5, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED        3      1      0
  RBM16 WILD-TYPE     45     52     18
D528V6, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        2      1      0      1      0
  RBM16 WILD-TYPE     35     30     17     20     13
D528V7, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED        2      2      0
  RBM16 WILD-TYPE     69     25     21
D528V8, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM16 MUTATED        1      0      1      0      1      1      0
  RBM16 WILD-TYPE     17      8      9      8     35     24     12
D528V9, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM16 MUTATED        0      1      0      3      0      0
  RBM16 WILD-TYPE     17     31     13     29     16      7
D528V10, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(529) Variable = PHACTR2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR2 MUTATED        0      1      2      0
  PHACTR2 WILD-TYPE     19     52     28     24
D529V1, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR2 MUTATED        1      1      0      1
  PHACTR2 WILD-TYPE     34     29     34     25
D529V2, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        1      0      0      1      0
  PHACTR2 WILD-TYPE     28     18     13      8     13
D529V3, multiclass
[1] "Remove cluster labels:" "PHACTR2 MUTATED"       
clus
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        2      0      0      0      0
  PHACTR2 WILD-TYPE     30     18     12     10     10
D529V4, multiclass
[1] "Remove cluster labels:" "PHACTR2 MUTATED"       
clus
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        0      1      0      1      1
  PHACTR2 WILD-TYPE     26     19     28     24     19
D529V5, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR2 MUTATED        1      0      2
  PHACTR2 WILD-TYPE     47     53     16
D529V6, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               0                53
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        0      1      0      2      0
  PHACTR2 WILD-TYPE     37     30     17     19     13
D529V7, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR2 MUTATED        1      0      2
  PHACTR2 WILD-TYPE     70     27     19
D529V8, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               0                27
  CLUS_3               2                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHACTR2 MUTATED        0      0      1      0      0      1      1
  PHACTR2 WILD-TYPE     18      8      9      8     36     24     11
D529V9, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR2 MUTATED        0      0      0      1      1      1
  PHACTR2 WILD-TYPE     17     32     13     31     15      6
D529V10, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               1                15
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(530) Variable = TLR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLR1 MUTATED        0      1      1      2
  TLR1 WILD-TYPE     19     52     29     22
D530V1, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLR1 MUTATED        2      1      0      1
  TLR1 WILD-TYPE     33     29     34     25
D530V2, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR1 MUTATED        0      0      0      3      0
  TLR1 WILD-TYPE     29     18     13      6     13
D530V3, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            3              6
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR1 MUTATED        1      0      0      2      0
  TLR1 WILD-TYPE     31     18     12      8     10
D530V4, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            2              8
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR1 MUTATED        1      1      0      1      1
  TLR1 WILD-TYPE     25     19     28     24     19
D530V5, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLR1 MUTATED        2      1      1
  TLR1 WILD-TYPE     46     52     17
D530V6, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR1 MUTATED        0      1      0      3      0
  TLR1 WILD-TYPE     37     30     17     18     13
D530V7, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            3             18
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLR1 MUTATED        2      1      1
  TLR1 WILD-TYPE     69     26     20
D530V8, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TLR1 MUTATED        1      0      1      0      0      1      1
  TLR1 WILD-TYPE     17      8      9      8     36     24     11
D530V9, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TLR1 MUTATED        0      1      0      2      0      1
  TLR1 WILD-TYPE     17     31     13     30     16      6
D530V10, multiclass
        clus
vv       TLR1 MUTATED TLR1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(531) Variable = OR6C74 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C74 MUTATED        0      2      1      0
  OR6C74 WILD-TYPE     19     51     29     24
D531V1, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C74 MUTATED        1      1      1      0
  OR6C74 WILD-TYPE     34     29     33     26
D531V2, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR6C74 MUTATED        0      0      0      1      1
  OR6C74 WILD-TYPE     29     18     13      8     12
D531V3, multiclass
[1] "Remove cluster labels:" "OR6C74 MUTATED"        
clus
  OR6C74 MUTATED OR6C74 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR6C74 MUTATED        1      0      1      0      0
  OR6C74 WILD-TYPE     31     18     11     10     10
D531V4, multiclass
[1] "Remove cluster labels:" "OR6C74 MUTATED"        
clus
  OR6C74 MUTATED OR6C74 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" "OR6C74 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR6C74 MUTATED        1      0      0      2      0
  OR6C74 WILD-TYPE     25     20     28     23     20
D531V5, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C74 MUTATED        2      1      0
  OR6C74 WILD-TYPE     46     52     18
D531V6, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR6C74 MUTATED        1      0      1      1      0
  OR6C74 WILD-TYPE     36     31     16     20     13
D531V7, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C74 MUTATED        2      1      0
  OR6C74 WILD-TYPE     69     26     21
D531V8, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR6C74 MUTATED        1      0      1      0      1      0      0
  OR6C74 WILD-TYPE     17      8      9      8     35     25     12
D531V9, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR6C74 MUTATED        0      1      0      2      0      0
  OR6C74 WILD-TYPE     17     31     13     30     16      7
D531V10, multiclass
        clus
vv       OR6C74 MUTATED OR6C74 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(532) Variable = ROBO3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        2      1      3      1
  ROBO3 WILD-TYPE     17     52     27     23
D532V1, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        3      1      1      2
  ROBO3 WILD-TYPE     32     29     33     24
D532V2, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO3 MUTATED        2      0      0      1      0
  ROBO3 WILD-TYPE     27     18     13      8     13
D532V3, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO3 MUTATED        2      0      0      1      0
  ROBO3 WILD-TYPE     30     18     12      9     10
D532V4, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO3 MUTATED        3      0      0      3      1
  ROBO3 WILD-TYPE     23     20     28     22     19
D532V5, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        4      3      0
  ROBO3 WILD-TYPE     44     50     18
D532V6, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             4              44
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO3 MUTATED        2      2      1      2      0
  ROBO3 WILD-TYPE     35     29     16     19     13
D532V7, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        4      3      0
  ROBO3 WILD-TYPE     67     24     21
D532V8, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ROBO3 MUTATED        0      0      2      0      3      2      0
  ROBO3 WILD-TYPE     18      8      8      8     33     23     12
D532V9, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ROBO3 MUTATED        0      2      1      3      1      0
  ROBO3 WILD-TYPE     17     30     12     29     15      7
D532V10, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(533) Variable = SLC45A4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A4 MUTATED        0      3      2      1
  SLC45A4 WILD-TYPE     19     50     28     23
D533V1, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                50
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A4 MUTATED        2      3      1      0
  SLC45A4 WILD-TYPE     33     27     33     26
D533V2, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               3                27
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        2      0      1      2      1
  SLC45A4 WILD-TYPE     27     18     12      7     12
D533V3, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               1                12
  CLUS_4               2                 7
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        2      0      0      2      2
  SLC45A4 WILD-TYPE     30     18     12      8      8
D533V4, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               2                 8
  CLUS_5               2                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        1      1      1      2      0
  SLC45A4 WILD-TYPE     25     19     27     23     20
D533V5, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A4 MUTATED        3      1      1
  SLC45A4 WILD-TYPE     45     52     17
D533V6, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        1      0      0      3      1
  SLC45A4 WILD-TYPE     36     31     17     18     12
D533V7, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               3                18
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A4 MUTATED        3      1      1
  SLC45A4 WILD-TYPE     68     26     20
D533V8, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC45A4 MUTATED        0      0      2      0      2      1      0
  SLC45A4 WILD-TYPE     18      8      8      8     34     24     12
D533V9, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC45A4 MUTATED        0      2      0      2      1      0
  SLC45A4 WILD-TYPE     17     30     13     30     15      7
D533V10, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(534) Variable = COQ9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COQ9 MUTATED        0      1      1      1
  COQ9 WILD-TYPE     19     52     29     23
D534V1, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COQ9 MUTATED        1      1      1      0
  COQ9 WILD-TYPE     34     29     33     26
D534V2, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COQ9 MUTATED        0      0      2      1      0
  COQ9 WILD-TYPE     29     18     11      8     13
D534V3, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            0             18
  CLUS_3            2             11
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COQ9 MUTATED        2      0      1      0      0
  COQ9 WILD-TYPE     30     18     11     10     10
D534V4, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COQ9 MUTATED        0      0      1      2      0
  COQ9 WILD-TYPE     26     20     27     23     20
D534V5, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COQ9 MUTATED        3      0      0
  COQ9 WILD-TYPE     45     53     18
D534V6, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            0             53
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COQ9 MUTATED        1      0      1      1      0
  COQ9 WILD-TYPE     36     31     16     20     13
D534V7, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COQ9 MUTATED        2      1      0
  COQ9 WILD-TYPE     69     26     21
D534V8, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COQ9 MUTATED        1      0      1      0      1      0      0
  COQ9 WILD-TYPE     17      8      9      8     35     25     12
D534V9, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COQ9 MUTATED        0      0      0      3      0      0
  COQ9 WILD-TYPE     17     32     13     29     16      7
D534V10, multiclass
        clus
vv       COQ9 MUTATED COQ9 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(535) Variable = CLCN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED        0      2      0      1
  CLCN3 WILD-TYPE     19     51     30     23
D535V1, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             0              30
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED        1      1      1      0
  CLCN3 WILD-TYPE     34     29     33     26
D535V2, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCN3 MUTATED        1      0      0      1      0
  CLCN3 WILD-TYPE     28     18     13      8     13
D535V3, multiclass
[1] "Remove cluster labels:" "CLCN3 MUTATED"         
clus
  CLCN3 MUTATED CLCN3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCN3 MUTATED        0      0      0      2      0
  CLCN3 WILD-TYPE     32     18     12      8     10
D535V4, multiclass
[1] "Remove cluster labels:" "CLCN3 MUTATED"         
clus
  CLCN3 MUTATED CLCN3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" "CLCN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCN3 MUTATED        1      0      0      2      0
  CLCN3 WILD-TYPE     25     20     28     23     20
D535V5, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCN3 MUTATED        2      1      0
  CLCN3 WILD-TYPE     46     52     18
D535V6, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCN3 MUTATED        0      0      2      1      0
  CLCN3 WILD-TYPE     37     31     15     20     13
D535V7, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCN3 MUTATED        2      1      0
  CLCN3 WILD-TYPE     69     26     21
D535V8, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLCN3 MUTATED        0      0      0      0      3      0      0
  CLCN3 WILD-TYPE     18      8     10      8     33     25     12
D535V9, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLCN3 MUTATED        0      0      1      2      0      0
  CLCN3 WILD-TYPE     17     32     12     30     16      7
D535V10, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(536) Variable = SFRS11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS11 MUTATED        1      0      2      0
  SFRS11 WILD-TYPE     18     53     28     24
D536V1, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              0               53
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS11 MUTATED        1      0      0      2
  SFRS11 WILD-TYPE     34     30     34     24
D536V2, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS11 MUTATED        1      0      0      1      0
  SFRS11 WILD-TYPE     28     18     13      8     13
D536V3, multiclass
[1] "Remove cluster labels:" "SFRS11 MUTATED"        
clus
  SFRS11 MUTATED SFRS11 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS11 MUTATED        2      0      0      0      0
  SFRS11 WILD-TYPE     30     18     12     10     10
D536V4, multiclass
[1] "Remove cluster labels:" "SFRS11 MUTATED"        
clus
  SFRS11 MUTATED SFRS11 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" "SFRS11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS11 MUTATED        0      1      1      1      0
  SFRS11 WILD-TYPE     26     19     27     24     20
D536V5, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS11 MUTATED        1      1      1
  SFRS11 WILD-TYPE     47     52     17
D536V6, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS11 MUTATED        0      0      0      2      1
  SFRS11 WILD-TYPE     37     31     17     19     12
D536V7, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS11 MUTATED        2      0      1
  SFRS11 WILD-TYPE     69     27     20
D536V8, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFRS11 MUTATED        0      1      1      0      0      0      1
  SFRS11 WILD-TYPE     18      7      9      8     36     25     11
D536V9, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SFRS11 MUTATED        1      0      0      1      1      0
  SFRS11 WILD-TYPE     16     32     13     31     15      7
D536V10, multiclass
        clus
vv       SFRS11 MUTATED SFRS11 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(537) Variable = SIGLEC14 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        1      1      1      0
  SIGLEC14 WILD-TYPE     18     52     29     24
D537V1, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                1                 52
  CLUS_3                1                 29
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        2      0      1      0
  SIGLEC14 WILD-TYPE     33     30     33     26
D537V2, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                0                 30
  CLUS_3                1                 33
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC14 MUTATED        0      0      0      1      0
  SIGLEC14 WILD-TYPE     29     18     13      8     13
D537V3, multiclass
[1] "Remove cluster labels:" "SIGLEC14 MUTATED"      
clus
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC14 MUTATED        1      0      0      0      0
  SIGLEC14 WILD-TYPE     31     18     12     10     10
D537V4, multiclass
[1] "Remove cluster labels:" "SIGLEC14 MUTATED"      
clus
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC14 MUTATED        1      0      1      1      0
  SIGLEC14 WILD-TYPE     25     20     27     24     20
D537V5, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                1                 24
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        2      1      0
  SIGLEC14 WILD-TYPE     46     52     18
D537V6, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                1                 52
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC14 MUTATED        2      0      0      1      0
  SIGLEC14 WILD-TYPE     35     31     17     20     13
D537V7, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                0                 31
  CLUS_3                0                 17
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        3      0      0
  SIGLEC14 WILD-TYPE     68     27     21
D537V8, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                0                 27
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIGLEC14 MUTATED        1      1      1      0      0      0      0
  SIGLEC14 WILD-TYPE     17      7      9      8     36     25     12
D537V9, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                0                 36
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SIGLEC14 MUTATED        1      1      0      1      0      0
  SIGLEC14 WILD-TYPE     16     31     13     31     16      7
D537V10, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                1                 31
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(538) Variable = PRKCD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED        0      0      2      3
  PRKCD WILD-TYPE     19     53     28     21
D538V1, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             0              19
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED        1      0      1      3
  PRKCD WILD-TYPE     34     30     33     23
D538V2, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKCD MUTATED        2      0      0      1      0
  PRKCD WILD-TYPE     27     18     13      8     13
D538V3, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKCD MUTATED        3      0      0      0      0
  PRKCD WILD-TYPE     29     18     12     10     10
D538V4, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKCD MUTATED        0      3      0      1      1
  PRKCD WILD-TYPE     26     17     28     24     19
D538V5, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              17
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCD MUTATED        1      2      2
  PRKCD WILD-TYPE     47     51     16
D538V6, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKCD MUTATED        1      1      0      1      2
  PRKCD WILD-TYPE     36     30     17     20     11
D538V7, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCD MUTATED        2      0      3
  PRKCD WILD-TYPE     69     27     18
D538V8, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKCD MUTATED        0      0      1      0      0      3      1
  PRKCD WILD-TYPE     18      8      9      8     36     22     11
D538V9, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             3              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKCD MUTATED        1      1      0      1      2      0
  PRKCD WILD-TYPE     16     31     13     31     14      7
D538V10, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(539) Variable = ATP2B2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B2 MUTATED        2      1      1      1
  ATP2B2 WILD-TYPE     17     52     29     23
D539V1, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B2 MUTATED        3      0      2      0
  ATP2B2 WILD-TYPE     32     30     32     26
D539V2, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B2 MUTATED        2      1      0      1      0
  ATP2B2 WILD-TYPE     27     17     13      8     13
D539V3, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B2 MUTATED        3      1      0      0      0
  ATP2B2 WILD-TYPE     29     17     12     10     10
D539V4, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B2 MUTATED        1      0      2      1      1
  ATP2B2 WILD-TYPE     25     20     26     24     19
D539V5, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B2 MUTATED        1      4      0
  ATP2B2 WILD-TYPE     47     49     18
D539V6, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              4               49
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B2 MUTATED        2      2      0      1      0
  ATP2B2 WILD-TYPE     35     29     17     20     13
D539V7, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B2 MUTATED        5      0      0
  ATP2B2 WILD-TYPE     66     27     21
D539V8, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2B2 MUTATED        0      1      1      1      2      0      0
  ATP2B2 WILD-TYPE     18      7      9      7     34     25     12
D539V9, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP2B2 MUTATED        0      2      2      1      0      0
  ATP2B2 WILD-TYPE     17     30     11     31     16      7
D539V10, multiclass
        clus
vv       ATP2B2 MUTATED ATP2B2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              2               11
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(540) Variable = RASAL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL1 MUTATED        0      0      3      0
  RASAL1 WILD-TYPE     19     53     27     24
D540V1, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL1 MUTATED        1      2      0      0
  RASAL1 WILD-TYPE     34     28     34     26
D540V2, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              2               28
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL1 MUTATED        0      1      0      1      0
  RASAL1 WILD-TYPE     29     17     13      8     13
D540V3, multiclass
[1] "Remove cluster labels:" "RASAL1 MUTATED"        
clus
  RASAL1 MUTATED RASAL1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-A5SO       TCGA-IB-A5SP 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL1 MUTATED        1      1      0      0      0
  RASAL1 WILD-TYPE     31     17     12     10     10
D540V4, multiclass
[1] "Remove cluster labels:" "RASAL1 MUTATED"        
clus
  RASAL1 MUTATED RASAL1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-A5SO       TCGA-IB-A5SP 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" "RASAL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL1 MUTATED        0      1      0      2      0
  RASAL1 WILD-TYPE     26     19     28     23     20
D540V5, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL1 MUTATED        2      0      1
  RASAL1 WILD-TYPE     46     53     17
D540V6, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              0               53
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL1 MUTATED        0      1      0      1      1
  RASAL1 WILD-TYPE     37     30     17     20     12
D540V7, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL1 MUTATED        1      2      0
  RASAL1 WILD-TYPE     70     25     21
D540V8, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASAL1 MUTATED        0      0      1      1      0      0      1
  RASAL1 WILD-TYPE     18      8      9      7     36     25     11
D540V9, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASAL1 MUTATED        0      0      0      2      0      1
  RASAL1 WILD-TYPE     17     32     13     30     16      6
D540V10, multiclass
        clus
vv       RASAL1 MUTATED RASAL1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(541) Variable = NPIP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPIP MUTATED        0      2      0      1
  NPIP WILD-TYPE     19     51     30     23
D541V1, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            0             30
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPIP MUTATED        2      1      0      0
  NPIP WILD-TYPE     33     29     34     26
D541V2, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPIP MUTATED        1      0      0      0      0
  NPIP WILD-TYPE     28     18     13      9     13
D541V3, multiclass
[1] "Remove cluster labels:" "NPIP MUTATED"          
clus
  NPIP MUTATED NPIP WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-Z5-AAPL 
"NPIP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPIP MUTATED        0      0      0      1      0
  NPIP WILD-TYPE     32     18     12      9     10
D541V4, multiclass
[1] "Remove cluster labels:" "NPIP MUTATED"          
clus
  NPIP MUTATED NPIP WILD-TYPE 
             1             81 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7651 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" "NPIP WILD-TYPE" 
    TCGA-Z5-AAPL 
"NPIP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPIP MUTATED        1      0      1      1      0
  NPIP WILD-TYPE     25     20     27     24     20
D541V5, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPIP MUTATED        1      2      0
  NPIP WILD-TYPE     47     51     18
D541V6, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPIP MUTATED        1      0      1      1      0
  NPIP WILD-TYPE     36     31     16     20     13
D541V7, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPIP MUTATED        2      1      0
  NPIP WILD-TYPE     69     26     21
D541V8, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NPIP MUTATED        1      0      0      0      2      0      0
  NPIP WILD-TYPE     17      8     10      8     34     25     12
D541V9, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NPIP MUTATED        0      1      1      1      0      0
  NPIP WILD-TYPE     17     31     12     31     16      7
D541V10, multiclass
        clus
vv       NPIP MUTATED NPIP WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(542) Variable = DISP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DISP1 MUTATED        2      4      2      1
  DISP1 WILD-TYPE     17     49     28     23
D542V1, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             4              49
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DISP1 MUTATED        4      2      3      0
  DISP1 WILD-TYPE     31     28     31     26
D542V2, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              28
  CLUS_3             3              31
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DISP1 MUTATED        3      0      0      1      0
  DISP1 WILD-TYPE     26     18     13      8     13
D542V3, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DISP1 MUTATED        4      0      0      0      0
  DISP1 WILD-TYPE     28     18     12     10     10
D542V4, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DISP1 MUTATED        2      2      2      3      0
  DISP1 WILD-TYPE     24     18     26     22     20
D542V5, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              18
  CLUS_3             2              26
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DISP1 MUTATED        3      5      1
  DISP1 WILD-TYPE     45     48     17
D542V6, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             5              48
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DISP1 MUTATED        3      1      1      4      0
  DISP1 WILD-TYPE     34     30     16     17     13
D542V7, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             4              17
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DISP1 MUTATED        7      1      1
  DISP1 WILD-TYPE     64     26     20
D542V8, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             7              64
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DISP1 MUTATED        0      2      1      0      1      2      2
  DISP1 WILD-TYPE     18      6      9      8     35     23     10
D542V9, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DISP1 MUTATED        1      1      2      3      0      1
  DISP1 WILD-TYPE     16     31     11     29     16      6
D542V10, multiclass
        clus
vv       DISP1 MUTATED DISP1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(543) Variable = CD14 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD14 MUTATED        1      0      1      1
  CD14 WILD-TYPE     18     53     29     23
D543V1, multiclass
        clus
vv       CD14 MUTATED CD14 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            0             53
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD14 MUTATED        1      1      1      0
  CD14 WILD-TYPE     34     29     33     26
D543V2, multiclass
        clus
vv       CD14 MUTATED CD14 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD14 MUTATED        0      0      0      2      0
  CD14 WILD-TYPE     29     18     13      7     13
D543V3, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5924     TCGA-FZ-5926 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD14 MUTATED        1      0      0      1      0
  CD14 WILD-TYPE     31     18     12      9     10
D543V4, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5924     TCGA-FZ-5926 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD14 MUTATED        1      0      0      1      0
  CD14 WILD-TYPE     25     20     28     24     20
D543V5, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2            117 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2J-AABV 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQA     TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9I9     TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IJ     TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IS     TCGA-3A-A9IU     TCGA-3A-A9IV     TCGA-3A-A9IX 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3A-A9J0     TCGA-3E-AAAY     TCGA-3E-AAAZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-F2-7273     TCGA-F2-A44G     TCGA-F2-A7TX     TCGA-F2-A8YN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAPS     TCGA-FB-AAPU     TCGA-FB-AAPZ     TCGA-FB-AAQ0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ2     TCGA-FB-AAQ3     TCGA-FB-AAQ6 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HV-A7OL     TCGA-HV-A7OP     TCGA-HV-AA8V 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7925     TCGA-HZ-8637     TCGA-HZ-A49I 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A77O     TCGA-HZ-A77P     TCGA-HZ-A77Q     TCGA-HZ-A8P0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A8P1     TCGA-HZ-A9TJ     TCGA-IB-7652     TCGA-IB-7885 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A6UG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUQ     TCGA-IB-AAUR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RL-AAAS     TCGA-S4-A8RO     TCGA-US-A776     TCGA-US-A779 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J     TCGA-XD-AAUG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Z5-AAPL 
"CD14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD14 MUTATED        1      1      0
  CD14 WILD-TYPE     47     52     18
D543V6, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2            117 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2J-AABV 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQA     TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9I9     TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IJ     TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IS     TCGA-3A-A9IU     TCGA-3A-A9IV     TCGA-3A-A9IX 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3A-A9J0     TCGA-3E-AAAY     TCGA-3E-AAAZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-F2-7273     TCGA-F2-A44G     TCGA-F2-A7TX     TCGA-F2-A8YN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAPS     TCGA-FB-AAPU     TCGA-FB-AAPZ     TCGA-FB-AAQ0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ2     TCGA-FB-AAQ3     TCGA-FB-AAQ6 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HV-A7OL     TCGA-HV-A7OP     TCGA-HV-AA8V 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7925     TCGA-HZ-8637     TCGA-HZ-A49I 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A77O     TCGA-HZ-A77P     TCGA-HZ-A77Q     TCGA-HZ-A8P0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A8P1     TCGA-HZ-A9TJ     TCGA-IB-7652     TCGA-IB-7885 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A6UG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUQ     TCGA-IB-AAUR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RL-AAAS     TCGA-S4-A8RO     TCGA-US-A776     TCGA-US-A779 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J     TCGA-XD-AAUG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Z5-AAPL 
"CD14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD14 MUTATED        1      0      0      1      0
  CD14 WILD-TYPE     36     31     17     20     13
D543V7, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2            117 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2J-AABV 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQA     TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9I9     TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IJ     TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IS     TCGA-3A-A9IU     TCGA-3A-A9IV     TCGA-3A-A9IX 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3A-A9J0     TCGA-3E-AAAY     TCGA-3E-AAAZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-F2-7273     TCGA-F2-A44G     TCGA-F2-A7TX     TCGA-F2-A8YN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAPS     TCGA-FB-AAPU     TCGA-FB-AAPZ     TCGA-FB-AAQ0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ2     TCGA-FB-AAQ3     TCGA-FB-AAQ6 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HV-A7OL     TCGA-HV-A7OP     TCGA-HV-AA8V 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7925     TCGA-HZ-8637     TCGA-HZ-A49I 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A77O     TCGA-HZ-A77P     TCGA-HZ-A77Q     TCGA-HZ-A8P0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A8P1     TCGA-HZ-A9TJ     TCGA-IB-7652     TCGA-IB-7885 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A6UG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUQ     TCGA-IB-AAUR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RL-AAAS     TCGA-S4-A8RO     TCGA-US-A776     TCGA-US-A779 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J     TCGA-XD-AAUG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Z5-AAPL 
"CD14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD14 MUTATED        2      0      0
  CD14 WILD-TYPE     69     27     21
D543V8, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2            117 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2J-AABV 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQA     TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9I9     TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IJ     TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IS     TCGA-3A-A9IU     TCGA-3A-A9IV     TCGA-3A-A9IX 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IZ     TCGA-3A-A9J0     TCGA-3E-AAAY     TCGA-3E-AAAZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-F2-7273     TCGA-F2-A44G     TCGA-F2-A7TX     TCGA-F2-A8YN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAPS     TCGA-FB-AAPU     TCGA-FB-AAPZ     TCGA-FB-AAQ0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ2     TCGA-FB-AAQ3     TCGA-FB-AAQ6 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HV-A7OL     TCGA-HV-A7OP     TCGA-HV-AA8V 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7925     TCGA-HZ-8637     TCGA-HZ-A49I 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A77O     TCGA-HZ-A77P     TCGA-HZ-A77Q     TCGA-HZ-A8P0 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A8P1     TCGA-HZ-A9TJ     TCGA-IB-7652     TCGA-IB-7885 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF     TCGA-IB-A6UG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUQ     TCGA-IB-AAUR 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUS     TCGA-IB-AAUU     TCGA-IB-AAUV     TCGA-IB-AAUW 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-LB-A8F3     TCGA-LB-A9Q5     TCGA-OE-A75W 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Q3-A5QY     TCGA-Q3-AA2A     TCGA-RB-A7B8     TCGA-RB-AA9M 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RL-AAAS     TCGA-S4-A8RO     TCGA-US-A776     TCGA-US-A779 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J     TCGA-XD-AAUG 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XN-A8T5     TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-Z5-AAPL 
"CD14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD14 MUTATED        0      0      1      0      1      0      0
  CD14 WILD-TYPE     18      8      9      8     35     25     12
D543V9, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2            115 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2L-AAQA 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7     TCGA-3A-A9I9 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH     TCGA-3A-A9IJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR     TCGA-3A-A9IS 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IV     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9J0     TCGA-3E-AAAY     TCGA-3E-AAAZ     TCGA-F2-7273 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A7TX     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPS 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAPU     TCGA-FB-AAPZ     TCGA-FB-AAQ0     TCGA-FB-AAQ1 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ2     TCGA-FB-AAQ3     TCGA-FB-AAQ6     TCGA-H8-A6C1 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HV-A7OL     TCGA-HV-AA8V     TCGA-HZ-7918     TCGA-HZ-7925 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-A49I     TCGA-HZ-A77O     TCGA-HZ-A77P 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A77Q     TCGA-HZ-A8P0     TCGA-HZ-A8P1     TCGA-HZ-A9TJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A6UG     TCGA-IB-A7LX     TCGA-IB-A7M4 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUQ     TCGA-IB-AAUR     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-RL-AAAS     TCGA-S4-A8RO 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUG     TCGA-XD-AAUH     TCGA-XD-AAUI 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUL     TCGA-XN-A8T3     TCGA-XN-A8T5     TCGA-YB-A89D 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD14 MUTATED        0      1      0      1      0      0
  CD14 WILD-TYPE     17     31     13     31     16      7
D543V10, multiclass
[1] "Remove cluster labels:" "CD14 MUTATED"          
clus
  CD14 MUTATED CD14 WILD-TYPE 
             2            115 
    TCGA-2J-AAB1     TCGA-2J-AAB4     TCGA-2J-AAB6     TCGA-2J-AAB8 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AAB9     TCGA-2J-AABA     TCGA-2J-AABE     TCGA-2J-AABF 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO     TCGA-2J-AABP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2J-AABT     TCGA-2J-AABU     TCGA-2L-AAQA 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQE     TCGA-2L-AAQI     TCGA-2L-AAQJ     TCGA-2L-AAQL 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9I7     TCGA-3A-A9I9 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IB     TCGA-3A-A9IC     TCGA-3A-A9IH     TCGA-3A-A9IJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IL     TCGA-3A-A9IO     TCGA-3A-A9IR     TCGA-3A-A9IS 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IV     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-3A-A9J0     TCGA-3E-AAAY     TCGA-3E-AAAZ     TCGA-F2-7273 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A7TX     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPS 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAPU     TCGA-FB-AAPZ     TCGA-FB-AAQ0     TCGA-FB-AAQ1 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-FB-AAQ2     TCGA-FB-AAQ3     TCGA-FB-AAQ6     TCGA-H8-A6C1 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HV-A7OL     TCGA-HV-AA8V     TCGA-HZ-7918     TCGA-HZ-7925 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-A49I     TCGA-HZ-A77O     TCGA-HZ-A77P 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-HZ-A77Q     TCGA-HZ-A8P0     TCGA-HZ-A8P1     TCGA-HZ-A9TJ 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-A6UF     TCGA-IB-A6UG     TCGA-IB-A7LX     TCGA-IB-A7M4 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUM     TCGA-IB-AAUN     TCGA-IB-AAUO     TCGA-IB-AAUP 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUQ     TCGA-IB-AAUR     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-RL-AAAS     TCGA-S4-A8RO 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A776     TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-US-A77J     TCGA-XD-AAUG     TCGA-XD-AAUH     TCGA-XD-AAUI 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-XD-AAUL     TCGA-XN-A8T3     TCGA-XN-A8T5     TCGA-YB-A89D 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 
    TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CD14 WILD-TYPE" "CD14 WILD-TYPE" "CD14 WILD-TYPE" 

Clustering(544) Variable = TATDN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        0      2      1      1
  TATDN2 WILD-TYPE     19     51     29     23
D544V1, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        2      0      1      1
  TATDN2 WILD-TYPE     33     30     33     25
D544V2, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN2 MUTATED        0      0      0      2      0
  TATDN2 WILD-TYPE     29     18     13      7     13
D544V3, multiclass
[1] "Remove cluster labels:" "TATDN2 MUTATED"        
clus
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN2 MUTATED        1      0      0      1      0
  TATDN2 WILD-TYPE     31     18     12      9     10
D544V4, multiclass
[1] "Remove cluster labels:" "TATDN2 MUTATED"        
clus
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN2 MUTATED        0      0      1      2      1
  TATDN2 WILD-TYPE     26     20     27     23     19
D544V5, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN2 MUTATED        2      2      0
  TATDN2 WILD-TYPE     46     51     18
D544V6, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN2 MUTATED        1      1      1      1      0
  TATDN2 WILD-TYPE     36     30     16     20     13
D544V7, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN2 MUTATED        4      0      0
  TATDN2 WILD-TYPE     67     27     21
D544V8, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TATDN2 MUTATED        0      1      1      0      1      1      0
  TATDN2 WILD-TYPE     18      7      9      8     35     24     12
D544V9, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TATDN2 MUTATED        1      1      0      2      0      0
  TATDN2 WILD-TYPE     16     31     13     30     16      7
D544V10, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(545) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        3      1      2      3
  ARID1A WILD-TYPE     16     52     28     21
D545V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               16
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              3               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        3      1      3      2
  ARID1A WILD-TYPE     32     29     31     24
D545V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               32
  CLUS_2              1               29
  CLUS_3              3               31
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        2      1      2      1      0
  ARID1A WILD-TYPE     27     17     11      8     13
D545V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               27
  CLUS_2              1               17
  CLUS_3              2               11
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        3      1      2      0      0
  ARID1A WILD-TYPE     29     17     10     10     10
D545V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              2               10
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        3      1      2      1      1
  ARID1A WILD-TYPE     23     19     26     24     19
D545V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               23
  CLUS_2              1               19
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        2      5      1
  ARID1A WILD-TYPE     46     48     17
D545V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               46
  CLUS_2              5               48
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        3      2      1      1      1
  ARID1A WILD-TYPE     34     29     16     20     12
D545V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               34
  CLUS_2              2               29
  CLUS_3              1               16
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        5      1      2
  ARID1A WILD-TYPE     66     26     19
D545V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5               66
  CLUS_2              1               26
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        1      1      1      0      3      2      0
  ARID1A WILD-TYPE     17      7      9      8     33     23     12
D545V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED        2      2      0      2      2      0
  ARID1A WILD-TYPE     15     30     13     30     14      7
D545V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               15
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(546) Variable = ZC3H11A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        0      1      3      1
  ZC3H11A WILD-TYPE     19     52     27     23
D546V1, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        2      1      0      2
  ZC3H11A WILD-TYPE     33     29     34     24
D546V2, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        2      1      0      1      1
  ZC3H11A WILD-TYPE     27     17     13      8     12
D546V3, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        3      1      1      0      0
  ZC3H11A WILD-TYPE     29     17     11     10     10
D546V4, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        0      0      1      2      2
  ZC3H11A WILD-TYPE     26     20     27     23     18
D546V5, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      2      1
  ZC3H11A WILD-TYPE     46     51     17
D546V6, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        0      4      0      1      0
  ZC3H11A WILD-TYPE     37     27     17     20     13
D546V7, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0                37
  CLUS_2               4                27
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        3      1      1
  ZC3H11A WILD-TYPE     68     26     20
D546V8, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H11A MUTATED        0      0      2      0      0      3      0
  ZC3H11A WILD-TYPE     18      8      8      8     36     22     12
D546V9, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               3                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H11A MUTATED        0      1      1      2      1      0
  ZC3H11A WILD-TYPE     17     31     12     30     15      7
D546V10, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(547) Variable = ANKRD49 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD49 MUTATED        0      2      1      0
  ANKRD49 WILD-TYPE     19     51     29     24
D547V1, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD49 MUTATED        3      0      0      0
  ANKRD49 WILD-TYPE     32     30     34     26
D547V2, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                30
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD49 MUTATED        0      1      1      1      0
  ANKRD49 WILD-TYPE     29     17     12      8     13
D547V3, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD49 MUTATED        1      1      1      0      0
  ANKRD49 WILD-TYPE     31     17     11     10     10
D547V4, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD49 MUTATED        1      1      0      1      0
  ANKRD49 WILD-TYPE     25     19     28     24     20
D547V5, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        2      1      0
  ANKRD49 WILD-TYPE     46     52     18
D547V6, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD49 MUTATED        1      0      1      1      0
  ANKRD49 WILD-TYPE     36     31     16     20     13
D547V7, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD49 MUTATED        2      1      0
  ANKRD49 WILD-TYPE     69     26     21
D547V8, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD49 MUTATED        1      0      1      0      0      1      0
  ANKRD49 WILD-TYPE     17      8      9      8     36     24     12
D547V9, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD49 MUTATED        0      1      0      2      0      0
  ANKRD49 WILD-TYPE     17     31     13     30     16      7
D547V10, multiclass
        clus
vv       ANKRD49 MUTATED ANKRD49 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(548) Variable = NDUFV2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        0      1      0      2
  NDUFV2 WILD-TYPE     19     52     30     22
D548V1, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              0               30
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        2      0      1      0
  NDUFV2 WILD-TYPE     33     30     33     26
D548V2, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDUFV2 MUTATED        3      0      0      0      0
  NDUFV2 WILD-TYPE     26     18     13      9     13
D548V3, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDUFV2 MUTATED        3      0      0      0      0
  NDUFV2 WILD-TYPE     29     18     12     10     10
D548V4, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDUFV2 MUTATED        1      0      2      0      0
  NDUFV2 WILD-TYPE     25     20     26     25     20
D548V5, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              0               25
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        0      3      0
  NDUFV2 WILD-TYPE     48     50     18
D548V6, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              0               48
  CLUS_2              3               50
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDUFV2 MUTATED        3      0      0      0      0
  NDUFV2 WILD-TYPE     34     31     17     21     13
D548V7, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        3      0      0
  NDUFV2 WILD-TYPE     68     27     21
D548V8, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NDUFV2 MUTATED        0      0      0      0      3      0      0
  NDUFV2 WILD-TYPE     18      8     10      8     33     25     12
D548V9, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              3               33
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NDUFV2 MUTATED        0      3      0      0      0      0
  NDUFV2 WILD-TYPE     17     29     13     32     16      7
D548V10, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              0               13
  CLUS_4              0               32
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(549) Variable = PPP1R12C MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12C MUTATED        0      2      1      1
  PPP1R12C WILD-TYPE     19     51     29     23
D549V1, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 51
  CLUS_3                1                 29
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12C MUTATED        2      0      1      1
  PPP1R12C WILD-TYPE     33     30     33     25
D549V2, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                0                 30
  CLUS_3                1                 33
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        1      0      0      1      0
  PPP1R12C WILD-TYPE     28     18     13      8     13
D549V3, multiclass
[1] "Remove cluster labels:" "PPP1R12C MUTATED"      
clus
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB9         TCGA-2J-AABA 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2J-AABF         TCGA-2J-AABH         TCGA-2J-AABK 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2J-AABO         TCGA-2J-AABR         TCGA-2L-AAQA 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2L-AAQI         TCGA-2L-AAQJ         TCGA-2L-AAQL 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2L-AAQM         TCGA-3A-A9I5         TCGA-3A-A9IB 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-3A-A9IH         TCGA-3A-A9IU         TCGA-3A-A9IX 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-3A-A9IZ         TCGA-3E-AAAZ         TCGA-F2-A44G 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        2      0      0      0      0
  PPP1R12C WILD-TYPE     30     18     12     10     10
D549V4, multiclass
[1] "Remove cluster labels:" "PPP1R12C MUTATED"      
clus
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB9         TCGA-2J-AABA 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2J-AABF         TCGA-2J-AABH         TCGA-2J-AABK 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2J-AABO         TCGA-2J-AABR         TCGA-2L-AAQA 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2L-AAQI         TCGA-2L-AAQJ         TCGA-2L-AAQL 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-2L-AAQM         TCGA-3A-A9I5         TCGA-3A-A9IB 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-3A-A9IH         TCGA-3A-A9IU         TCGA-3A-A9IX 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-3A-A9IZ         TCGA-3E-AAAZ         TCGA-F2-A44G 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-F2-A8YN         TCGA-FB-A5VM         TCGA-FB-A78T 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        2      0      0      1      1
  PPP1R12C WILD-TYPE     24     20     28     24     19
D549V5, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 20
  CLUS_3                0                 28
  CLUS_4                1                 24
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12C MUTATED        1      2      1
  PPP1R12C WILD-TYPE     47     51     17
D549V6, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                2                 51
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        0      1      0      2      1
  PPP1R12C WILD-TYPE     37     30     17     19     12
D549V7, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                1                 30
  CLUS_3                0                 17
  CLUS_4                2                 19
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12C MUTATED        3      0      1
  PPP1R12C WILD-TYPE     68     27     20
D549V8, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                0                 27
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP1R12C MUTATED        0      1      2      1      0      0      0
  PPP1R12C WILD-TYPE     18      7      8      7     36     25     12
D549V9, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                  7
  CLUS_3                2                  8
  CLUS_4                1                  7
  CLUS_5                0                 36
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP1R12C MUTATED        1      0      1      1      1      0
  PPP1R12C WILD-TYPE     16     32     12     31     15      7
D549V10, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                0                 32
  CLUS_3                1                 12
  CLUS_4                1                 31
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(550) Variable = CCDC74A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC74A MUTATED        1      1      1      1
  CCDC74A WILD-TYPE     18     52     29     23
D550V1, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC74A MUTATED        1      1      1      1
  CCDC74A WILD-TYPE     34     29     33     25
D550V2, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC74A MUTATED        1      1      0      1      0
  CCDC74A WILD-TYPE     28     17     13      8     13
D550V3, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC74A MUTATED        2      1      0      0      0
  CCDC74A WILD-TYPE     30     17     12     10     10
D550V4, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC74A MUTATED        1      0      0      2      1
  CCDC74A WILD-TYPE     25     20     28     23     19
D550V5, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC74A MUTATED        3      0      1
  CCDC74A WILD-TYPE     45     53     17
D550V6, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               3                45
  CLUS_2               0                53
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC74A MUTATED        1      0      1      1      1
  CCDC74A WILD-TYPE     36     31     16     20     12
D550V7, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC74A MUTATED        2      1      1
  CCDC74A WILD-TYPE     69     26     20
D550V8, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC74A MUTATED        1      0      1      1      1      0      0
  CCDC74A WILD-TYPE     17      8      9      7     35     25     12
D550V9, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC74A MUTATED        1      0      0      2      1      0
  CCDC74A WILD-TYPE     16     32     13     30     15      7
D550V10, multiclass
        clus
vv       CCDC74A MUTATED CCDC74A WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(551) Variable = C3ORF15 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF15 MUTATED        2      0      2      0
  C3ORF15 WILD-TYPE     17     53     28     24
D551V1, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               0                53
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF15 MUTATED        2      1      1      0
  C3ORF15 WILD-TYPE     33     29     33     26
D551V2, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF15 MUTATED        1      1      1      1      0
  C3ORF15 WILD-TYPE     28     17     12      8     13
D551V3, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF15 MUTATED        2      1      1      0      0
  C3ORF15 WILD-TYPE     30     17     11     10     10
D551V4, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF15 MUTATED        0      1      1      2      0
  C3ORF15 WILD-TYPE     26     19     27     23     20
D551V5, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF15 MUTATED        2      1      1
  C3ORF15 WILD-TYPE     46     52     17
D551V6, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF15 MUTATED        1      0      1      1      1
  C3ORF15 WILD-TYPE     36     31     16     20     12
D551V7, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF15 MUTATED        2      1      1
  C3ORF15 WILD-TYPE     69     26     20
D551V8, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C3ORF15 MUTATED        1      0      1      0      1      0      1
  C3ORF15 WILD-TYPE     17      8      9      8     35     25     11
D551V9, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C3ORF15 MUTATED        0      1      0      2      1      0
  C3ORF15 WILD-TYPE     17     31     13     30     15      7
D551V10, multiclass
        clus
vv       C3ORF15 MUTATED C3ORF15 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(552) Variable = DCX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCX MUTATED        1      0      0      2
  DCX WILD-TYPE     18     53     30     22
D552V1, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            53
  CLUS_3           0            30
  CLUS_4           2            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCX MUTATED        2      1      0      0
  DCX WILD-TYPE     33     29     34     26
D552V2, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           2            33
  CLUS_2           1            29
  CLUS_3           0            34
  CLUS_4           0            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCX MUTATED        1      0      0      0      0
  DCX WILD-TYPE     28     18     13      9     13
D552V3, multiclass
[1] "Remove cluster labels:" "DCX MUTATED"           
clus
  DCX MUTATED DCX WILD-TYPE 
            1            81 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-FB-AAPP    TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-FZ-5919    TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5922    TCGA-FZ-5923 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-FZ-5924    TCGA-FZ-5926    TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M    TCGA-US-A776    TCGA-US-A779 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-US-A77E    TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUH    TCGA-XD-AAUI 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-XD-AAUL    TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-Z5-AAPL 
"DCX WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCX MUTATED        1      0      0      0      0
  DCX WILD-TYPE     31     18     12     10     10
D552V4, multiclass
[1] "Remove cluster labels:" "DCX MUTATED"           
clus
  DCX MUTATED DCX WILD-TYPE 
            1            81 
   TCGA-2J-AAB4    TCGA-2J-AAB8    TCGA-2J-AAB9    TCGA-2J-AABA    TCGA-2J-AABF 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-2J-AABH    TCGA-2J-AABK    TCGA-2J-AABO    TCGA-2J-AABR    TCGA-2L-AAQA 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-2L-AAQI    TCGA-2L-AAQJ    TCGA-2L-AAQL    TCGA-2L-AAQM    TCGA-3A-A9I5 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-3A-A9IB    TCGA-3A-A9IH    TCGA-3A-A9IU    TCGA-3A-A9IX    TCGA-3A-A9IZ 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-3E-AAAZ    TCGA-F2-A44G    TCGA-F2-A8YN    TCGA-FB-A5VM    TCGA-FB-A78T 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-FB-AAPP    TCGA-FB-AAPQ    TCGA-FB-AAPZ    TCGA-FB-AAQ1    TCGA-FB-AAQ6 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-FZ-5919    TCGA-FZ-5920    TCGA-FZ-5921    TCGA-FZ-5922    TCGA-FZ-5923 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-FZ-5924    TCGA-FZ-5926    TCGA-H8-A6C1    TCGA-HZ-7918    TCGA-HZ-7925 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-8126    TCGA-IB-A5SO 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UF 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-A7LX    TCGA-IB-A7M4    TCGA-IB-AAUM    TCGA-IB-AAUN    TCGA-IB-AAUO 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-IB-AAUP    TCGA-IB-AAUS    TCGA-IB-AAUU    TCGA-IB-AAUV    TCGA-IB-AAUW 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-LB-A8F3    TCGA-LB-A9Q5    TCGA-OE-A75W    TCGA-Q3-A5QY 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-Q3-AA2A    TCGA-RB-A7B8    TCGA-RB-AA9M    TCGA-US-A776    TCGA-US-A779 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-US-A77E    TCGA-US-A77G    TCGA-US-A77J    TCGA-XD-AAUH    TCGA-XD-AAUI 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-XD-AAUL    TCGA-XN-A8T5    TCGA-YB-A89D    TCGA-YH-A8SY    TCGA-YY-A8LH 
"DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" "DCX WILD-TYPE" 
   TCGA-Z5-AAPL 
"DCX WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCX MUTATED        0      0      1      1      1
  DCX WILD-TYPE     26     20     27     24     19
D552V5, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           0            26
  CLUS_2           0            20
  CLUS_3           1            27
  CLUS_4           1            24
  CLUS_5           1            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DCX MUTATED        1      2      0
  DCX WILD-TYPE     47     51     18
D552V6, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           1            47
  CLUS_2           2            51
  CLUS_3           0            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCX MUTATED        1      1      1      0      0
  DCX WILD-TYPE     36     30     16     21     13
D552V7, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           1            36
  CLUS_2           1            30
  CLUS_3           1            16
  CLUS_4           0            21
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DCX MUTATED        2      1      0
  DCX WILD-TYPE     69     26     21
D552V8, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           2            69
  CLUS_2           1            26
  CLUS_3           0            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCX MUTATED        0      0      0      1      2      0      0
  DCX WILD-TYPE     18      8     10      7     34     25     12
D552V9, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           0            10
  CLUS_4           1             7
  CLUS_5           2            34
  CLUS_6           0            25
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DCX MUTATED        0      1      1      1      0      0
  DCX WILD-TYPE     17     31     12     31     16      7
D552V10, multiclass
        clus
vv       DCX MUTATED DCX WILD-TYPE
  CLUS_1           0            17
  CLUS_2           1            31
  CLUS_3           1            12
  CLUS_4           1            31
  CLUS_5           0            16
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(553) Variable = HMGCR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMGCR MUTATED        1      4      1      0
  HMGCR WILD-TYPE     18     49     29     24
D553V1, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             1              18
  CLUS_2             4              49
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMGCR MUTATED        3      2      1      0
  HMGCR WILD-TYPE     32     28     33     26
D553V2, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCR MUTATED        1      0      1      1      0
  HMGCR WILD-TYPE     28     18     12      8     13
D553V3, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCR MUTATED        2      0      1      0      0
  HMGCR WILD-TYPE     30     18     11     10     10
D553V4, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCR MUTATED        1      1      2      2      0
  HMGCR WILD-TYPE     25     19     26     23     20
D553V5, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMGCR MUTATED        3      2      1
  HMGCR WILD-TYPE     45     51     17
D553V6, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCR MUTATED        2      0      1      3      0
  HMGCR WILD-TYPE     35     31     16     18     13
D553V7, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMGCR MUTATED        4      1      1
  HMGCR WILD-TYPE     67     26     20
D553V8, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HMGCR MUTATED        1      0      2      0      2      0      1
  HMGCR WILD-TYPE     17      8      8      8     34     25     11
D553V9, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HMGCR MUTATED        1      2      0      2      0      1
  HMGCR WILD-TYPE     16     30     13     30     16      6
D553V10, multiclass
        clus
vv       HMGCR MUTATED HMGCR WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(554) Variable = ITPR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        0      3      1      1
  ITPR2 WILD-TYPE     19     50     29     23
D554V1, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        3      0      1      1
  ITPR2 WILD-TYPE     32     30     33     25
D554V2, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        1      1      0      1      0
  ITPR2 WILD-TYPE     28     17     13      8     13
D554V3, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        2      1      0      0      0
  ITPR2 WILD-TYPE     30     17     12     10     10
D554V4, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        2      0      1      1      1
  ITPR2 WILD-TYPE     24     20     27     24     19
D554V5, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED        1      3      1
  ITPR2 WILD-TYPE     47     50     17
D554V6, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        3      0      0      1      1
  ITPR2 WILD-TYPE     34     31     17     20     12
D554V7, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED        4      0      1
  ITPR2 WILD-TYPE     67     27     20
D554V8, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITPR2 MUTATED        0      0      1      1      2      1      0
  ITPR2 WILD-TYPE     18      8      9      7     34     24     12
D554V9, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITPR2 MUTATED        1      2      0      1      1      0
  ITPR2 WILD-TYPE     16     30     13     31     15      7
D554V10, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(555) Variable = FZD7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD7 MUTATED        2      1      1      0
  FZD7 WILD-TYPE     17     52     29     24
D555V1, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD7 MUTATED        2      1      0      1
  FZD7 WILD-TYPE     33     29     34     25
D555V2, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD7 MUTATED        0      0      0      0      0
  FZD7 WILD-TYPE     29     18     13      9     13
D555V3, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD7 MUTATED        0      0      0      0      0
  FZD7 WILD-TYPE     32     18     12     10     10
D555V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD7 MUTATED        1      1      1      0      1
  FZD7 WILD-TYPE     25     19     27     25     19
D555V5, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            0             25
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD7 MUTATED        0      3      1
  FZD7 WILD-TYPE     48     50     17
D555V6, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            0             48
  CLUS_2            3             50
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD7 MUTATED        1      1      0      2      0
  FZD7 WILD-TYPE     36     30     17     19     13
D555V7, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            2             19
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD7 MUTATED        3      0      1
  FZD7 WILD-TYPE     68     27     20
D555V8, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FZD7 MUTATED        0      1      0      1      1      0      1
  FZD7 WILD-TYPE     18      7     10      7     35     25     11
D555V9, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            1              7
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FZD7 MUTATED        2      0      1      0      0      1
  FZD7 WILD-TYPE     15     32     12     32     16      6
D555V10, multiclass
        clus
vv       FZD7 MUTATED FZD7 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0             32
  CLUS_3            1             12
  CLUS_4            0             32
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(556) Variable = TGFBR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        3      1      2      0
  TGFBR1 WILD-TYPE     16     52     28     24
D556V1, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3               16
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        1      3      1      1
  TGFBR1 WILD-TYPE     34     27     33     25
D556V2, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              3               27
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR1 MUTATED        1      1      1      1      1
  TGFBR1 WILD-TYPE     28     17     12      8     12
D556V3, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR1 MUTATED        3      1      1      0      0
  TGFBR1 WILD-TYPE     29     17     11     10     10
D556V4, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR1 MUTATED        1      0      0      3      1
  TGFBR1 WILD-TYPE     25     20     28     22     19
D556V5, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              3               22
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        4      0      1
  TGFBR1 WILD-TYPE     44     53     17
D556V6, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              0               53
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR1 MUTATED        1      1      2      1      0
  TGFBR1 WILD-TYPE     36     30     15     20     13
D556V7, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              2               15
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        3      2      0
  TGFBR1 WILD-TYPE     68     25     21
D556V8, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR1 MUTATED        1      0      1      0      1      1      1
  TGFBR1 WILD-TYPE     17      8      9      8     35     24     11
D556V9, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TGFBR1 MUTATED        2      0      0      3      0      0
  TGFBR1 WILD-TYPE     15     32     13     29     16      7
D556V10, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(557) Variable = LRRC41 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC41 MUTATED        0      2      1      0
  LRRC41 WILD-TYPE     19     51     29     24
D557V1, multiclass
        clus
vv       LRRC41 MUTATED LRRC41 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC41 MUTATED        1      0      1      1
  LRRC41 WILD-TYPE     34     30     33     25
D557V2, multiclass
        clus
vv       LRRC41 MUTATED LRRC41 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC41 MUTATED        0      2      0      0      0
  LRRC41 WILD-TYPE     29     16     13      9     13
D557V3, multiclass
[1] "Remove cluster labels:" "LRRC41 MUTATED"        
clus
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUL       TCGA-XN-A8T5 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC41 MUTATED        0      1      0      0      1
  LRRC41 WILD-TYPE     32     17     12     10      9
D557V4, multiclass
[1] "Remove cluster labels:" "LRRC41 MUTATED"        
clus
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUL       TCGA-XN-A8T5 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC41 MUTATED        2      0      0      0      1
  LRRC41 WILD-TYPE     24     20     28     25     19
D557V5, multiclass
        clus
vv       LRRC41 MUTATED LRRC41 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              0               25
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC41 MUTATED        2      1      0
  LRRC41 WILD-TYPE     46     52     18
D557V6, multiclass
        clus
vv       LRRC41 MUTATED LRRC41 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC41 MUTATED        1      1      0      1      0
  LRRC41 WILD-TYPE     36     30     17     20     13
D557V7, multiclass
        clus
vv       LRRC41 MUTATED LRRC41 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC41 MUTATED        2      0      1
  LRRC41 WILD-TYPE     69     27     20
D557V8, multiclass
        clus
vv       LRRC41 MUTATED LRRC41 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRC41 MUTATED        0      0      1      0      0      1      0
  LRRC41 WILD-TYPE     18      8      9      8     36     24     12
D557V9, multiclass
[1] "Remove cluster labels:" "LRRC41 MUTATED"        
clus
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               2              115 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2L-AAQA 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I7       TCGA-3A-A9I9 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IL       TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9J0       TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-HV-A7OL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HV-AA8V       TCGA-HV-AA8X       TCGA-HZ-7918       TCGA-HZ-7925 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8637       TCGA-HZ-A49I       TCGA-HZ-A77O       TCGA-HZ-A77P 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-A77Q       TCGA-HZ-A8P0       TCGA-HZ-A8P1       TCGA-HZ-A9TJ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A6UG       TCGA-IB-A7LX 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUP       TCGA-IB-AAUQ       TCGA-IB-AAUR       TCGA-IB-AAUS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-RL-AAAS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-S4-A8RO       TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A77G       TCGA-US-A77J       TCGA-XD-AAUG       TCGA-XD-AAUH 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-XD-AAUL       TCGA-XN-A8T3       TCGA-XN-A8T5       TCGA-YB-A89D 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC41 MUTATED        0      1      0      0      1      0
  LRRC41 WILD-TYPE     17     31     13     32     15      7
D557V10, multiclass
[1] "Remove cluster labels:" "LRRC41 MUTATED"        
clus
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               2              115 
      TCGA-2J-AAB1       TCGA-2J-AAB4       TCGA-2J-AAB6       TCGA-2J-AAB8 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AAB9       TCGA-2J-AABA       TCGA-2J-AABE       TCGA-2J-AABF 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABP 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2J-AABT       TCGA-2J-AABU       TCGA-2L-AAQA 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2L-AAQE       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9I7       TCGA-3A-A9I9 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IB       TCGA-3A-A9IC       TCGA-3A-A9IH       TCGA-3A-A9IJ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IL       TCGA-3A-A9IO       TCGA-3A-A9IR       TCGA-3A-A9IS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IV       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-3A-A9J0       TCGA-3E-AAAY       TCGA-3E-AAAZ       TCGA-F2-7273 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A7TX       TCGA-F2-A8YN       TCGA-FB-A5VM 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-AAPU       TCGA-FB-AAPZ       TCGA-FB-AAQ0       TCGA-FB-AAQ1 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-AAQ2       TCGA-FB-AAQ3       TCGA-FB-AAQ6       TCGA-HV-A7OL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HV-AA8V       TCGA-HV-AA8X       TCGA-HZ-7918       TCGA-HZ-7925 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8637       TCGA-HZ-A49I       TCGA-HZ-A77O       TCGA-HZ-A77P 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-A77Q       TCGA-HZ-A8P0       TCGA-HZ-A8P1       TCGA-HZ-A9TJ 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A6UG       TCGA-IB-A7LX 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUP       TCGA-IB-AAUQ       TCGA-IB-AAUR       TCGA-IB-AAUS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-RL-AAAS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-S4-A8RO       TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A77G       TCGA-US-A77J       TCGA-XD-AAUG       TCGA-XD-AAUH 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-XD-AAUL       TCGA-XN-A8T3       TCGA-XN-A8T5       TCGA-YB-A89D 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 

Clustering(558) Variable = STAG3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG3 MUTATED        0      1      3      1
  STAG3 WILD-TYPE     19     52     27     23
D558V1, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG3 MUTATED        1      0      2      2
  STAG3 WILD-TYPE     34     30     32     24
D558V2, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG3 MUTATED        0      1      0      1      1
  STAG3 WILD-TYPE     29     17     13      8     12
D558V3, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG3 MUTATED        2      1      0      0      0
  STAG3 WILD-TYPE     30     17     12     10     10
D558V4, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG3 MUTATED        0      0      2      2      1
  STAG3 WILD-TYPE     26     20     26     23     19
D558V5, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG3 MUTATED        2      2      1
  STAG3 WILD-TYPE     46     51     17
D558V6, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG3 MUTATED        1      3      0      1      0
  STAG3 WILD-TYPE     36     28     17     20     13
D558V7, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              28
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG3 MUTATED        4      1      0
  STAG3 WILD-TYPE     67     26     21
D558V8, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAG3 MUTATED        0      0      2      0      1      1      1
  STAG3 WILD-TYPE     18      8      8      8     35     24     11
D558V9, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAG3 MUTATED        1      2      0      2      0      0
  STAG3 WILD-TYPE     16     30     13     30     16      7
D558V10, multiclass
        clus
vv       STAG3 MUTATED STAG3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(559) Variable = PSME4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSME4 MUTATED        0      2      2      1
  PSME4 WILD-TYPE     19     51     28     23
D559V1, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSME4 MUTATED        2      0      2      1
  PSME4 WILD-TYPE     33     30     32     25
D559V2, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSME4 MUTATED        1      0      1      1      0
  PSME4 WILD-TYPE     28     18     12      8     13
D559V3, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSME4 MUTATED        2      0      1      0      0
  PSME4 WILD-TYPE     30     18     11     10     10
D559V4, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSME4 MUTATED        0      1      2      1      1
  PSME4 WILD-TYPE     26     19     26     24     19
D559V5, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSME4 MUTATED        2      3      0
  PSME4 WILD-TYPE     46     50     18
D559V6, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSME4 MUTATED        2      2      0      1      0
  PSME4 WILD-TYPE     35     29     17     20     13
D559V7, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSME4 MUTATED        4      0      1
  PSME4 WILD-TYPE     67     27     20
D559V8, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSME4 MUTATED        0      0      1      0      1      3      0
  PSME4 WILD-TYPE     18      8      9      8     35     22     12
D559V9, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             3              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PSME4 MUTATED        0      3      0      1      1      0
  PSME4 WILD-TYPE     17     29     13     31     15      7
D559V10, multiclass
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              29
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(560) Variable = LILRA2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LILRA2 MUTATED        1      1      2      1
  LILRA2 WILD-TYPE     18     52     28     23
D560V1, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LILRA2 MUTATED        3      0      1      1
  LILRA2 WILD-TYPE     32     30     33     25
D560V2, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LILRA2 MUTATED        2      0      0      1      0
  LILRA2 WILD-TYPE     27     18     13      8     13
D560V3, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LILRA2 MUTATED        3      0      0      0      0
  LILRA2 WILD-TYPE     29     18     12     10     10
D560V4, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LILRA2 MUTATED        2      0      0      3      0
  LILRA2 WILD-TYPE     24     20     28     22     20
D560V5, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRA2 MUTATED        3      2      0
  LILRA2 WILD-TYPE     45     51     18
D560V6, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LILRA2 MUTATED        0      1      0      3      1
  LILRA2 WILD-TYPE     37     30     17     18     12
D560V7, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              3               18
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LILRA2 MUTATED        4      1      0
  LILRA2 WILD-TYPE     67     26     21
D560V8, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LILRA2 MUTATED        2      0      3      0      0      0      0
  LILRA2 WILD-TYPE     16      8      7      8     36     25     12
D560V9, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              3                7
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LILRA2 MUTATED        2      0      0      3      0      0
  LILRA2 WILD-TYPE     15     32     13     29     16      7
D560V10, multiclass
        clus
vv       LILRA2 MUTATED LILRA2 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(561) Variable = ATP2C2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        0      2      2      0
  ATP2C2 WILD-TYPE     19     51     28     24
D561V1, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        3      0      0      1
  ATP2C2 WILD-TYPE     32     30     34     25
D561V2, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C2 MUTATED        1      0      0      2      0
  ATP2C2 WILD-TYPE     28     18     13      7     13
D561V3, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C2 MUTATED        2      0      0      1      0
  ATP2C2 WILD-TYPE     30     18     12      9     10
D561V4, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C2 MUTATED        1      1      0      1      1
  ATP2C2 WILD-TYPE     25     19     28     24     19
D561V5, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        3      1      0
  ATP2C2 WILD-TYPE     45     52     18
D561V6, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C2 MUTATED        0      1      0      2      1
  ATP2C2 WILD-TYPE     37     30     17     19     12
D561V7, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        1      2      1
  ATP2C2 WILD-TYPE     70     25     20
D561V8, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              2               25
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2C2 MUTATED        1      0      1      0      0      2      0
  ATP2C2 WILD-TYPE     17      8      9      8     36     23     12
D561V9, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP2C2 MUTATED        0      0      0      2      2      0
  ATP2C2 WILD-TYPE     17     32     13     30     14      7
D561V10, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(562) Variable = KIAA1211 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1211 MUTATED        1      1      1      2
  KIAA1211 WILD-TYPE     18     52     29     22
D562V1, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                1                 52
  CLUS_3                1                 29
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1211 MUTATED        1      0      1      3
  KIAA1211 WILD-TYPE     34     30     33     23
D562V2, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                0                 30
  CLUS_3                1                 33
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1211 MUTATED        1      0      0      1      0
  KIAA1211 WILD-TYPE     28     18     13      8     13
D562V3, multiclass
[1] "Remove cluster labels:" "KIAA1211 MUTATED"      
clus
  KIAA1211 MUTATED KIAA1211 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1211 MUTATED        2      0      0      0      0
  KIAA1211 WILD-TYPE     30     18     12     10     10
D562V4, multiclass
[1] "Remove cluster labels:" "KIAA1211 MUTATED"      
clus
  KIAA1211 MUTATED KIAA1211 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"KIAA1211 WILD-TYPE" "KIAA1211 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1211 MUTATED        0      1      1      1      2
  KIAA1211 WILD-TYPE     26     19     27     24     18
D562V5, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 19
  CLUS_3                1                 27
  CLUS_4                1                 24
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1211 MUTATED        1      2      2
  KIAA1211 WILD-TYPE     47     51     16
D562V6, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                2                 51
  CLUS_3                2                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1211 MUTATED        1      1      0      1      2
  KIAA1211 WILD-TYPE     36     30     17     20     11
D562V7, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                1                 30
  CLUS_3                0                 17
  CLUS_4                1                 20
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1211 MUTATED        3      0      2
  KIAA1211 WILD-TYPE     68     27     19
D562V8, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                0                 27
  CLUS_3                2                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1211 MUTATED        0      1      1      2      0      1      0
  KIAA1211 WILD-TYPE     18      7      9      6     36     24     12
D562V9, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                2                  6
  CLUS_5                0                 36
  CLUS_6                1                 24
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1211 MUTATED        1      0      1      1      2      0
  KIAA1211 WILD-TYPE     16     32     12     31     14      7
D562V10, multiclass
        clus
vv       KIAA1211 MUTATED KIAA1211 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                0                 32
  CLUS_3                1                 12
  CLUS_4                1                 31
  CLUS_5                2                 14
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(563) Variable = LPIN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN3 MUTATED        0      3      0      1
  LPIN3 WILD-TYPE     19     50     30     23
D563V1, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             0              30
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN3 MUTATED        0      3      1      0
  LPIN3 WILD-TYPE     35     27     33     26
D563V2, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             3              27
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LPIN3 MUTATED        1      0      0      1      0
  LPIN3 WILD-TYPE     28     18     13      8     13
D563V3, multiclass
[1] "Remove cluster labels:" "LPIN3 MUTATED"         
clus
  LPIN3 MUTATED LPIN3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-AAPP 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1      TCGA-FB-AAQ6 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921      TCGA-FZ-5922 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926      TCGA-H8-A6C1 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651      TCGA-IB-7652 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LPIN3 MUTATED        1      0      0      1      0
  LPIN3 WILD-TYPE     31     18     12      9     10
D563V4, multiclass
[1] "Remove cluster labels:" "LPIN3 MUTATED"         
clus
  LPIN3 MUTATED LPIN3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-3A-A9I5      TCGA-3A-A9IB      TCGA-3A-A9IH 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-AAPP 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1      TCGA-FB-AAQ6 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921      TCGA-FZ-5922 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926      TCGA-H8-A6C1 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651      TCGA-IB-7652 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" "LPIN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LPIN3 MUTATED        0      2      1      1      0
  LPIN3 WILD-TYPE     26     18     27     24     20
D563V5, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPIN3 MUTATED        1      1      2
  LPIN3 WILD-TYPE     47     52     16
D563V6, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LPIN3 MUTATED        1      0      1      2      0
  LPIN3 WILD-TYPE     36     31     16     19     13
D563V7, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPIN3 MUTATED        1      1      2
  LPIN3 WILD-TYPE     70     26     19
D563V8, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              26
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LPIN3 MUTATED        0      0      0      0      2      0      2
  LPIN3 WILD-TYPE     18      8     10      8     34     25     10
D563V9, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LPIN3 MUTATED        0      1      0      1      0      2
  LPIN3 WILD-TYPE     17     31     13     31     16      5
D563V10, multiclass
        clus
vv       LPIN3 MUTATED LPIN3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             2               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(564) Variable = WDR8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR8 MUTATED        0      2      2      0
  WDR8 WILD-TYPE     19     51     28     24
D564V1, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR8 MUTATED        2      0      1      1
  WDR8 WILD-TYPE     33     30     33     25
D564V2, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR8 MUTATED        1      0      0      1      1
  WDR8 WILD-TYPE     28     18     13      8     12
D564V3, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             18
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR8 MUTATED        2      0      0      0      1
  WDR8 WILD-TYPE     30     18     12     10      9
D564V4, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            1              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR8 MUTATED        1      0      1      1      1
  WDR8 WILD-TYPE     25     20     27     24     19
D564V5, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR8 MUTATED        1      2      1
  WDR8 WILD-TYPE     47     51     17
D564V6, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            2             51
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR8 MUTATED        1      2      0      1      0
  WDR8 WILD-TYPE     36     29     17     20     13
D564V7, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR8 MUTATED        3      0      1
  WDR8 WILD-TYPE     68     27     20
D564V8, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR8 MUTATED        0      2      1      0      0      1      0
  WDR8 WILD-TYPE     18      6      9      8     36     24     12
D564V9, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            2              6
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR8 MUTATED        0      1      1      1      1      0
  WDR8 WILD-TYPE     17     31     12     31     15      7
D564V10, multiclass
        clus
vv       WDR8 MUTATED WDR8 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            1             12
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(565) Variable = ASH1L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASH1L MUTATED        0      3      1      2
  ASH1L WILD-TYPE     19     50     29     22
D565V1, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASH1L MUTATED        4      0      1      1
  ASH1L WILD-TYPE     31     30     33     25
D565V2, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASH1L MUTATED        3      0      0      1      0
  ASH1L WILD-TYPE     26     18     13      8     13
D565V3, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             3              26
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASH1L MUTATED        4      0      0      0      0
  ASH1L WILD-TYPE     28     18     12     10     10
D565V4, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             4              28
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASH1L MUTATED        1      3      0      1      1
  ASH1L WILD-TYPE     25     17     28     24     19
D565V5, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              17
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        2      4      0
  ASH1L WILD-TYPE     46     49     18
D565V6, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             2              46
  CLUS_2             4              49
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASH1L MUTATED        2      1      0      1      2
  ASH1L WILD-TYPE     35     30     17     20     11
D565V7, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             2              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASH1L MUTATED        4      0      2
  ASH1L WILD-TYPE     67     27     19
D565V8, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASH1L MUTATED        0      0      1      0      1      4      0
  ASH1L WILD-TYPE     18      8      9      8     35     21     12
D565V9, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             4              21
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASH1L MUTATED        0      2      1      1      2      0
  ASH1L WILD-TYPE     17     30     12     31     14      7
D565V10, multiclass
        clus
vv       ASH1L MUTATED ASH1L WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(566) Variable = SPINT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT1 MUTATED        0      1      1      1
  SPINT1 WILD-TYPE     19     52     29     23
D566V1, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT1 MUTATED        0      1      1      1
  SPINT1 WILD-TYPE     35     29     33     25
D566V2, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPINT1 MUTATED        2      0      1      0      0
  SPINT1 WILD-TYPE     27     18     12      9     13
D566V3, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPINT1 MUTATED        2      0      0      0      1
  SPINT1 WILD-TYPE     30     18     12     10      9
D566V4, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPINT1 MUTATED        1      0      0      1      1
  SPINT1 WILD-TYPE     25     20     28     24     19
D566V5, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPINT1 MUTATED        2      1      0
  SPINT1 WILD-TYPE     46     52     18
D566V6, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPINT1 MUTATED        1      1      1      0      0
  SPINT1 WILD-TYPE     36     30     16     21     13
D566V7, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPINT1 MUTATED        2      1      0
  SPINT1 WILD-TYPE     69     26     21
D566V8, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPINT1 MUTATED        0      0      1      0      1      1      0
  SPINT1 WILD-TYPE     18      8      9      8     35     24     12
D566V9, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPINT1 MUTATED        1      0      0      1      1      0
  SPINT1 WILD-TYPE     16     32     13     31     15      7
D566V10, multiclass
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(567) Variable = SARS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SARS2 MUTATED        3      1      0      0
  SARS2 WILD-TYPE     16     52     30     24
D567V1, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             3              16
  CLUS_2             1              52
  CLUS_3             0              30
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SARS2 MUTATED        2      0      2      0
  SARS2 WILD-TYPE     33     30     32     26
D567V2, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARS2 MUTATED        1      1      0      1      0
  SARS2 WILD-TYPE     28     17     13      8     13
D567V3, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARS2 MUTATED        1      1      0      1      0
  SARS2 WILD-TYPE     31     17     12      9     10
D567V4, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARS2 MUTATED        2      0      1      1      0
  SARS2 WILD-TYPE     24     20     27     24     20
D567V5, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        2      2      0
  SARS2 WILD-TYPE     46     51     18
D567V6, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARS2 MUTATED        4      0      0      0      0
  SARS2 WILD-TYPE     33     31     17     21     13
D567V7, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARS2 MUTATED        3      1      0
  SARS2 WILD-TYPE     68     26     21
D567V8, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SARS2 MUTATED        1      0      0      0      3      0      0
  SARS2 WILD-TYPE     17      8     10      8     33     25     12
D567V9, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SARS2 MUTATED        1      2      0      1      0      0
  SARS2 WILD-TYPE     16     30     13     31     16      7
D567V10, multiclass
        clus
vv       SARS2 MUTATED SARS2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(568) Variable = DNAH7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        0      3      2      3
  DNAH7 WILD-TYPE     19     50     28     21
D568V1, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             3              50
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        3      2      1      2
  DNAH7 WILD-TYPE     32     28     33     24
D568V2, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        2      1      1      1      1
  DNAH7 WILD-TYPE     27     17     12      8     12
D568V3, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             1              17
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        3      1      0      0      2
  DNAH7 WILD-TYPE     29     17     12     10      8
D568V4, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        1      1      1      2      1
  DNAH7 WILD-TYPE     25     19     27     23     19
D568V5, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        3      2      1
  DNAH7 WILD-TYPE     45     51     17
D568V6, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        2      1      1      1      1
  DNAH7 WILD-TYPE     35     30     16     20     12
D568V7, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        4      1      1
  DNAH7 WILD-TYPE     67     26     20
D568V8, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH7 MUTATED        0      0      1      0      3      2      0
  DNAH7 WILD-TYPE     18      8      9      8     33     23     12
D568V9, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             3              33
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH7 MUTATED        0      2      1      2      1      0
  DNAH7 WILD-TYPE     17     30     12     30     15      7
D568V10, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(569) Variable = XIRP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XIRP2 MUTATED        1      2      1      2
  XIRP2 WILD-TYPE     18     51     29     22
D569V1, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XIRP2 MUTATED        2      1      2      1
  XIRP2 WILD-TYPE     33     29     32     25
D569V2, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED        1      1      0      1      1
  XIRP2 WILD-TYPE     28     17     13      8     12
D569V3, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED        2      0      0      0      2
  XIRP2 WILD-TYPE     30     18     12     10      8
D569V4, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             2               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED        0      0      1      2      2
  XIRP2 WILD-TYPE     26     20     27     23     18
D569V5, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XIRP2 MUTATED        3      2      0
  XIRP2 WILD-TYPE     45     51     18
D569V6, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED        1      2      1      1      0
  XIRP2 WILD-TYPE     36     29     16     20     13
D569V7, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XIRP2 MUTATED        3      1      1
  XIRP2 WILD-TYPE     68     26     20
D569V8, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XIRP2 MUTATED        0      0      2      1      2      0      0
  XIRP2 WILD-TYPE     18      8      8      7     34     25     12
D569V9, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XIRP2 MUTATED        0      1      1      2      1      0
  XIRP2 WILD-TYPE     17     31     12     30     15      7
D569V10, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(570) Variable = SLC4A5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A5 MUTATED        1      0      1      2
  SLC4A5 WILD-TYPE     18     53     29     22
D570V1, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              0               53
  CLUS_3              1               29
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A5 MUTATED        1      1      2      0
  SLC4A5 WILD-TYPE     34     29     32     26
D570V2, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A5 MUTATED        0      0      0      1      0
  SLC4A5 WILD-TYPE     29     18     13      8     13
D570V3, multiclass
[1] "Remove cluster labels:" "SLC4A5 MUTATED"        
clus
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-Z5-AAPL 
"SLC4A5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A5 MUTATED        1      0      0      0      0
  SLC4A5 WILD-TYPE     31     18     12     10     10
D570V4, multiclass
[1] "Remove cluster labels:" "SLC4A5 MUTATED"        
clus
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-Z5-AAPL 
"SLC4A5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A5 MUTATED        1      0      1      2      0
  SLC4A5 WILD-TYPE     25     20     27     23     20
D570V5, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              2               23
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A5 MUTATED        3      1      0
  SLC4A5 WILD-TYPE     45     52     18
D570V6, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A5 MUTATED        1      0      2      1      0
  SLC4A5 WILD-TYPE     36     31     15     20     13
D570V7, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              2               15
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A5 MUTATED        2      2      0
  SLC4A5 WILD-TYPE     69     25     21
D570V8, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               25
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC4A5 MUTATED        1      0      1      0      2      0      0
  SLC4A5 WILD-TYPE     17      8      9      8     34     25     12
D570V9, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC4A5 MUTATED        0      1      0      3      0      0
  SLC4A5 WILD-TYPE     17     31     13     29     16      7
D570V10, multiclass
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(571) Variable = BTN2A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTN2A2 MUTATED        0      1      1      1
  BTN2A2 WILD-TYPE     19     52     29     23
D571V1, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTN2A2 MUTATED        0      1      2      0
  BTN2A2 WILD-TYPE     35     29     32     26
D571V2, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTN2A2 MUTATED        1      1      1      0      0
  BTN2A2 WILD-TYPE     28     17     12      9     13
D571V3, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              0                9
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTN2A2 MUTATED        2      1      0      0      0
  BTN2A2 WILD-TYPE     30     17     12     10     10
D571V4, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTN2A2 MUTATED        0      0      2      1      0
  BTN2A2 WILD-TYPE     26     20     26     24     20
D571V5, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A2 MUTATED        1      2      0
  BTN2A2 WILD-TYPE     47     51     18
D571V6, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTN2A2 MUTATED        1      1      1      0      0
  BTN2A2 WILD-TYPE     36     30     16     21     13
D571V7, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A2 MUTATED        2      1      0
  BTN2A2 WILD-TYPE     69     26     21
D571V8, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTN2A2 MUTATED        1      0      0      0      1      1      0
  BTN2A2 WILD-TYPE     17      8     10      8     35     24     12
D571V9, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTN2A2 MUTATED        0      2      0      1      0      0
  BTN2A2 WILD-TYPE     17     30     13     31     16      7
D571V10, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(572) Variable = SV2A MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED        2      0      2      0
  SV2A WILD-TYPE     17     53     28     24
D572V1, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            2             17
  CLUS_2            0             53
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED        3      1      0      0
  SV2A WILD-TYPE     32     29     34     26
D572V2, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SV2A MUTATED        0      0      0      0      0
  SV2A WILD-TYPE     29     18     13      9     13
D572V3, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SV2A MUTATED        0      0      0      0      0
  SV2A WILD-TYPE     32     18     12     10     10
D572V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SV2A MUTATED        2      0      0      2      0
  SV2A WILD-TYPE     24     20     28     23     20
D572V5, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SV2A MUTATED        3      1      0
  SV2A WILD-TYPE     45     52     18
D572V6, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            3             45
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SV2A MUTATED        2      0      1      1      0
  SV2A WILD-TYPE     35     31     16     20     13
D572V7, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SV2A MUTATED        3      1      0
  SV2A WILD-TYPE     68     26     21
D572V8, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            3             68
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SV2A MUTATED        1      0      1      0      0      1      0
  SV2A WILD-TYPE     17      8      9      8     36     24     12
D572V9, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SV2A MUTATED        1      0      0      2      0      0
  SV2A WILD-TYPE     16     32     13     30     16      7
D572V10, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(573) Variable = MORC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC3 MUTATED        0      1      1      1
  MORC3 WILD-TYPE     19     52     29     23
D573V1, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC3 MUTATED        1      0      2      0
  MORC3 WILD-TYPE     34     30     32     26
D573V2, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC3 MUTATED        0      2      0      1      0
  MORC3 WILD-TYPE     29     16     13      8     13
D573V3, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             2              16
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC3 MUTATED        1      2      0      0      0
  MORC3 WILD-TYPE     31     16     12     10     10
D573V4, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             1              31
  CLUS_2             2              16
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC3 MUTATED        0      0      2      1      0
  MORC3 WILD-TYPE     26     20     26     24     20
D573V5, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC3 MUTATED        1      2      0
  MORC3 WILD-TYPE     47     51     18
D573V6, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC3 MUTATED        1      1      0      1      0
  MORC3 WILD-TYPE     36     30     17     20     13
D573V7, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC3 MUTATED        3      0      0
  MORC3 WILD-TYPE     68     27     21
D573V8, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MORC3 MUTATED        0      0      1      0      1      1      0
  MORC3 WILD-TYPE     18      8      9      8     35     24     12
D573V9, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MORC3 MUTATED        0      2      0      1      0      0
  MORC3 WILD-TYPE     17     30     13     31     16      7
D573V10, multiclass
        clus
vv       MORC3 MUTATED MORC3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(574) Variable = HABP4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HABP4 MUTATED        1      1      2      0
  HABP4 WILD-TYPE     18     52     28     24
D574V1, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HABP4 MUTATED        2      0      1      1
  HABP4 WILD-TYPE     33     30     33     25
D574V2, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HABP4 MUTATED        1      1      0      1      0
  HABP4 WILD-TYPE     28     17     13      8     13
D574V3, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HABP4 MUTATED        2      1      0      0      0
  HABP4 WILD-TYPE     30     17     12     10     10
D574V4, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HABP4 MUTATED        1      0      0      2      1
  HABP4 WILD-TYPE     25     20     28     23     19
D574V5, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HABP4 MUTATED        2      2      0
  HABP4 WILD-TYPE     46     51     18
D574V6, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HABP4 MUTATED        2      1      0      1      0
  HABP4 WILD-TYPE     35     30     17     20     13
D574V7, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HABP4 MUTATED        4      0      0
  HABP4 WILD-TYPE     67     27     21
D574V8, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HABP4 MUTATED        0      0      1      1      2      0      0
  HABP4 WILD-TYPE     18      8      9      7     34     25     12
D574V9, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HABP4 MUTATED        0      1      1      2      0      0
  HABP4 WILD-TYPE     17     31     12     30     16      7
D574V10, multiclass
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(575) Variable = SLC5A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC5A3 MUTATED        2      0      1      1
  SLC5A3 WILD-TYPE     17     53     29     23
D575V1, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              0               53
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC5A3 MUTATED        1      1      1      1
  SLC5A3 WILD-TYPE     34     29     33     25
D575V2, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC5A3 MUTATED        1      0      1      1      0
  SLC5A3 WILD-TYPE     28     18     12      8     13
D575V3, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC5A3 MUTATED        2      0      1      0      0
  SLC5A3 WILD-TYPE     30     18     11     10     10
D575V4, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC5A3 MUTATED        0      1      1      1      0
  SLC5A3 WILD-TYPE     26     19     27     24     20
D575V5, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC5A3 MUTATED        1      1      1
  SLC5A3 WILD-TYPE     47     52     17
D575V6, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC5A3 MUTATED        0      1      0      1      1
  SLC5A3 WILD-TYPE     37     30     17     20     12
D575V7, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC5A3 MUTATED        2      0      1
  SLC5A3 WILD-TYPE     69     27     20
D575V8, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC5A3 MUTATED        0      1      1      0      0      1      0
  SLC5A3 WILD-TYPE     18      7      9      8     36     24     12
D575V9, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC5A3 MUTATED        0      1      0      1      1      0
  SLC5A3 WILD-TYPE     17     31     13     31     15      7
D575V10, multiclass
        clus
vv       SLC5A3 MUTATED SLC5A3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(576) Variable = TGOLN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGOLN2 MUTATED        0      1      0      2
  TGOLN2 WILD-TYPE     19     52     30     22
D576V1, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              0               30
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGOLN2 MUTATED        0      0      2      1
  TGOLN2 WILD-TYPE     35     30     32     25
D576V2, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGOLN2 MUTATED        2      0      0      0      1
  TGOLN2 WILD-TYPE     27     18     13      9     12
D576V3, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGOLN2 MUTATED        2      0      0      0      1
  TGOLN2 WILD-TYPE     30     18     12     10      9
D576V4, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGOLN2 MUTATED        0      2      1      0      0
  TGOLN2 WILD-TYPE     26     18     27     25     20
D576V5, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              0               25
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGOLN2 MUTATED        0      2      1
  TGOLN2 WILD-TYPE     48     51     17
D576V6, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              0               48
  CLUS_2              2               51
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGOLN2 MUTATED        2      0      0      0      1
  TGOLN2 WILD-TYPE     35     31     17     21     12
D576V7, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              0               21
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGOLN2 MUTATED        2      0      1
  TGOLN2 WILD-TYPE     69     27     20
D576V8, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGOLN2 MUTATED        0      0      0      0      1      2      0
  TGOLN2 WILD-TYPE     18      8     10      8     35     23     12
D576V9, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TGOLN2 MUTATED        0      2      0      0      1      0
  TGOLN2 WILD-TYPE     17     30     13     32     15      7
D576V10, multiclass
        clus
vv       TGOLN2 MUTATED TGOLN2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              0               32
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(577) Variable = HIST1H1E MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        0      0      3      0
  HIST1H1E WILD-TYPE     19     53     27     24
D577V1, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 53
  CLUS_3                3                 27
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        2      1      0      0
  HIST1H1E WILD-TYPE     33     29     34     26
D577V2, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                1                 29
  CLUS_3                0                 34
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1E MUTATED        0      0      0      1      0
  HIST1H1E WILD-TYPE     29     18     13      8     13
D577V3, multiclass
[1] "Remove cluster labels:" "HIST1H1E MUTATED"      
clus
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1E MUTATED        1      0      0      0      0
  HIST1H1E WILD-TYPE     31     18     12     10     10
D577V4, multiclass
[1] "Remove cluster labels:" "HIST1H1E MUTATED"      
clus
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 1                 81 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-YH-A8SY         TCGA-YY-A8LH         TCGA-Z5-AAPL 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1E MUTATED        1      1      0      1      0
  HIST1H1E WILD-TYPE     25     19     28     24     20
D577V5, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                0                 28
  CLUS_4                1                 24
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1E MUTATED        1      1      1
  HIST1H1E WILD-TYPE     47     52     17
D577V6, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                1                 52
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1E MUTATED        0      0      0      2      1
  HIST1H1E WILD-TYPE     37     31     17     19     12
D577V7, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                0                 31
  CLUS_3                0                 17
  CLUS_4                2                 19
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1E MUTATED        2      1      0
  HIST1H1E WILD-TYPE     69     26     21
D577V8, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1E MUTATED        0      0      1      0      0      0      1
  HIST1H1E WILD-TYPE     18      8      9      8     36     25     11
D577V9, multiclass
[1] "Remove cluster labels:" "HIST1H1E MUTATED"      
clus
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 2                115 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABR         TCGA-2J-AABT         TCGA-2J-AABU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQE         TCGA-2L-AAQI 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQJ         TCGA-2L-AAQL         TCGA-2L-AAQM 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9I5         TCGA-3A-A9I7         TCGA-3A-A9I9 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IC         TCGA-3A-A9IH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IL         TCGA-3A-A9IO         TCGA-3A-A9IR 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IS         TCGA-3A-A9IU         TCGA-3A-A9IV 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3A-A9J0 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3E-AAAY         TCGA-3E-AAAZ         TCGA-F2-7273 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A7TX         TCGA-F2-A8YN 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-AAPP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAPQ         TCGA-FB-AAPS         TCGA-FB-AAPU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ0         TCGA-FB-AAQ1 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAQ2         TCGA-FB-AAQ3         TCGA-FB-AAQ6 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HV-A7OL         TCGA-HV-AA8V 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HV-AA8X         TCGA-HZ-7918         TCGA-HZ-7925 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-8637         TCGA-HZ-A49I         TCGA-HZ-A77O 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-A77P         TCGA-HZ-A77Q         TCGA-HZ-A8P0 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-A8P1         TCGA-HZ-A9TJ         TCGA-IB-7652 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A6UG 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUQ         TCGA-IB-AAUR         TCGA-IB-AAUS 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-RL-AAAS 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-XD-AAUG         TCGA-XD-AAUH         TCGA-XD-AAUI 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T3         TCGA-XN-A8T5 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-YB-A89D         TCGA-YH-A8SY         TCGA-YY-A8LH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-Z5-AAPL 
"HIST1H1E WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H1E MUTATED        0      0      0      1      0      1
  HIST1H1E WILD-TYPE     17     32     13     31     16      6
D577V10, multiclass
[1] "Remove cluster labels:" "HIST1H1E MUTATED"      
clus
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 2                115 
        TCGA-2J-AAB1         TCGA-2J-AAB4         TCGA-2J-AAB6 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AAB8         TCGA-2J-AAB9         TCGA-2J-AABA 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABE         TCGA-2J-AABF         TCGA-2J-AABH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2J-AABR         TCGA-2J-AABT         TCGA-2J-AABU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQE         TCGA-2L-AAQI 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-2L-AAQJ         TCGA-2L-AAQL         TCGA-2L-AAQM 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9I5         TCGA-3A-A9I7         TCGA-3A-A9I9 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IC         TCGA-3A-A9IH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IL         TCGA-3A-A9IO         TCGA-3A-A9IR 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IS         TCGA-3A-A9IU         TCGA-3A-A9IV 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3A-A9J0 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-3E-AAAY         TCGA-3E-AAAZ         TCGA-F2-7273 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A7TX         TCGA-F2-A8YN 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-AAPP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAPQ         TCGA-FB-AAPS         TCGA-FB-AAPU 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ0         TCGA-FB-AAQ1 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-FB-AAQ2         TCGA-FB-AAQ3         TCGA-FB-AAQ6 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HV-A7OL         TCGA-HV-AA8V 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HV-AA8X         TCGA-HZ-7918         TCGA-HZ-7925 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-8637         TCGA-HZ-A49I         TCGA-HZ-A77O 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-A77P         TCGA-HZ-A77Q         TCGA-HZ-A8P0 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-HZ-A8P1         TCGA-HZ-A9TJ         TCGA-IB-7652 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-8126         TCGA-IB-A5SO 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UF         TCGA-IB-A6UG 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUQ         TCGA-IB-AAUR         TCGA-IB-AAUS 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-IB-AAUU         TCGA-IB-AAUV         TCGA-IB-AAUW 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-LB-A8F3         TCGA-LB-A9Q5 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-OE-A75W         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-RL-AAAS 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-XD-AAUG         TCGA-XD-AAUH         TCGA-XD-AAUI 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T3         TCGA-XN-A8T5 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-YB-A89D         TCGA-YH-A8SY         TCGA-YY-A8LH 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-Z5-AAPL 
"HIST1H1E WILD-TYPE" 

Clustering(578) Variable = APOA1BP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOA1BP MUTATED        1      0      2      1
  APOA1BP WILD-TYPE     18     53     28     23
D578V1, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               1                18
  CLUS_2               0                53
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOA1BP MUTATED        2      2      0      0
  APOA1BP WILD-TYPE     33     28     34     26
D578V2, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOA1BP MUTATED        1      0      0      2      0
  APOA1BP WILD-TYPE     28     18     13      7     13
D578V3, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               1                28
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOA1BP MUTATED        3      0      0      0      0
  APOA1BP WILD-TYPE     29     18     12     10     10
D578V4, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               3                29
  CLUS_2               0                18
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOA1BP MUTATED        1      1      0      2      0
  APOA1BP WILD-TYPE     25     19     28     23     20
D578V5, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOA1BP MUTATED        3      1      0
  APOA1BP WILD-TYPE     45     52     18
D578V6, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOA1BP MUTATED        0      0      1      2      1
  APOA1BP WILD-TYPE     37     31     16     19     12
D578V7, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               0                37
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOA1BP MUTATED        2      2      0
  APOA1BP WILD-TYPE     69     25     21
D578V8, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               2                69
  CLUS_2               2                25
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APOA1BP MUTATED        1      0      1      0      0      0      1
  APOA1BP WILD-TYPE     17      8      9      8     36     25     11
D578V9, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APOA1BP MUTATED        0      0      0      3      0      0
  APOA1BP WILD-TYPE     17     32     13     29     16      7
D578V10, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(579) Variable = AKNAD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNAD1 MUTATED        0      0      1      2
  AKNAD1 WILD-TYPE     19     53     29     22
D579V1, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              1               29
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNAD1 MUTATED        1      0      1      1
  AKNAD1 WILD-TYPE     34     30     33     25
D579V2, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKNAD1 MUTATED        0      1      0      1      0
  AKNAD1 WILD-TYPE     29     17     13      8     13
D579V3, multiclass
[1] "Remove cluster labels:" "AKNAD1 MUTATED"        
clus
  AKNAD1 MUTATED AKNAD1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKNAD1 MUTATED        1      1      0      0      0
  AKNAD1 WILD-TYPE     31     17     12     10     10
D579V4, multiclass
[1] "Remove cluster labels:" "AKNAD1 MUTATED"        
clus
  AKNAD1 MUTATED AKNAD1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" "AKNAD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKNAD1 MUTATED        0      0      1      1      1
  AKNAD1 WILD-TYPE     26     20     27     24     19
D579V5, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKNAD1 MUTATED        1      2      0
  AKNAD1 WILD-TYPE     47     51     18
D579V6, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKNAD1 MUTATED        1      1      0      1      0
  AKNAD1 WILD-TYPE     36     30     17     20     13
D579V7, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKNAD1 MUTATED        3      0      0
  AKNAD1 WILD-TYPE     68     27     21
D579V8, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKNAD1 MUTATED        0      0      1      0      1      1      0
  AKNAD1 WILD-TYPE     18      8      9      8     35     24     12
D579V9, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKNAD1 MUTATED        0      1      1      1      0      0
  AKNAD1 WILD-TYPE     17     31     12     31     16      7
D579V10, multiclass
        clus
vv       AKNAD1 MUTATED AKNAD1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(580) Variable = MMP9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP9 MUTATED        0      1      1      1
  MMP9 WILD-TYPE     19     52     29     23
D580V1, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP9 MUTATED        2      1      0      0
  MMP9 WILD-TYPE     33     29     34     26
D580V2, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP9 MUTATED        1      0      0      1      0
  MMP9 WILD-TYPE     28     18     13      8     13
D580V3, multiclass
[1] "Remove cluster labels:" "MMP9 MUTATED"          
clus
  MMP9 MUTATED MMP9 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP9 MUTATED        2      0      0      0      0
  MMP9 WILD-TYPE     30     18     12     10     10
D580V4, multiclass
[1] "Remove cluster labels:" "MMP9 MUTATED"          
clus
  MMP9 MUTATED MMP9 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB     TCGA-3A-A9IH 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ     TCGA-3E-AAAZ 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM     TCGA-FB-A78T 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ     TCGA-FB-AAQ1 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" "MMP9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP9 MUTATED        0      1      0      2      0
  MMP9 WILD-TYPE     26     19     28     23     20
D580V5, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            0             28
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP9 MUTATED        3      0      0
  MMP9 WILD-TYPE     45     53     18
D580V6, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            0             53
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP9 MUTATED        0      0      1      1      1
  MMP9 WILD-TYPE     37     31     16     20     12
D580V7, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP9 MUTATED        1      1      1
  MMP9 WILD-TYPE     70     26     20
D580V8, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP9 MUTATED        0      0      1      0      1      1      0
  MMP9 WILD-TYPE     18      8      9      8     35     24     12
D580V9, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP9 MUTATED        0      0      0      2      1      0
  MMP9 WILD-TYPE     17     32     13     30     15      7
D580V10, multiclass
        clus
vv       MMP9 MUTATED MMP9 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(581) Variable = SCAND3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAND3 MUTATED        0      2      2      1
  SCAND3 WILD-TYPE     19     51     28     23
D581V1, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAND3 MUTATED        1      1      2      1
  SCAND3 WILD-TYPE     34     29     32     25
D581V2, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAND3 MUTATED        0      1      1      1      1
  SCAND3 WILD-TYPE     29     17     12      8     12
D581V3, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAND3 MUTATED        1      1      1      0      1
  SCAND3 WILD-TYPE     31     17     11     10      9
D581V4, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              1                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAND3 MUTATED        1      1      1      1      1
  SCAND3 WILD-TYPE     25     19     27     24     19
D581V5, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCAND3 MUTATED        3      1      1
  SCAND3 WILD-TYPE     45     52     17
D581V6, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAND3 MUTATED        2      1      0      1      1
  SCAND3 WILD-TYPE     35     30     17     20     12
D581V7, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCAND3 MUTATED        4      0      1
  SCAND3 WILD-TYPE     67     27     20
D581V8, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCAND3 MUTATED        0      0      1      0      1      3      0
  SCAND3 WILD-TYPE     18      8      9      8     35     22     12
D581V9, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              3               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCAND3 MUTATED        0      2      1      1      1      0
  SCAND3 WILD-TYPE     17     30     12     31     15      7
D581V10, multiclass
        clus
vv       SCAND3 MUTATED SCAND3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(582) Variable = RNGTT MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNGTT MUTATED        0      1      0      2
  RNGTT WILD-TYPE     19     52     30     22
D582V1, multiclass
        clus
vv       RNGTT MUTATED RNGTT WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             0              30
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNGTT MUTATED        0      1      1      1
  RNGTT WILD-TYPE     35     29     33     25
D582V2, multiclass
        clus
vv       RNGTT MUTATED RNGTT WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNGTT MUTATED        0      2      0      0      0
  RNGTT WILD-TYPE     29     16     13      9     13
D582V3, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5920      TCGA-FZ-5921 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNGTT MUTATED        0      2      0      0      0
  RNGTT WILD-TYPE     32     16     12     10     10
D582V4, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5920      TCGA-FZ-5921 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7651 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNGTT MUTATED        0      1      1      0      0
  RNGTT WILD-TYPE     26     19     27     25     20
D582V5, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2             117 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2J-AABT      TCGA-2J-AABU      TCGA-2J-AABV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9I7 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IJ      TCGA-3A-A9IL      TCGA-3A-A9IO      TCGA-3A-A9IR 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IS      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9J0      TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-7273 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPZ      TCGA-FB-AAQ0      TCGA-FB-AAQ1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-FB-AAQ6      TCGA-H8-A6C1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HV-A7OL      TCGA-HV-A7OP      TCGA-HV-AA8V      TCGA-HV-AA8X 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7925      TCGA-HZ-8637      TCGA-HZ-A49I 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q      TCGA-HZ-A8P0 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7651      TCGA-IB-7652 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A6UG      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUQ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUR      TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-RB-AA9M      TCGA-RL-AAAS      TCGA-S4-A8RO      TCGA-US-A776 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNGTT MUTATED        0      1      1
  RNGTT WILD-TYPE     48     52     17
D582V6, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2             117 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2J-AABT      TCGA-2J-AABU      TCGA-2J-AABV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9I7 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IJ      TCGA-3A-A9IL      TCGA-3A-A9IO      TCGA-3A-A9IR 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IS      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9J0      TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-7273 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPZ      TCGA-FB-AAQ0      TCGA-FB-AAQ1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-FB-AAQ6      TCGA-H8-A6C1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HV-A7OL      TCGA-HV-A7OP      TCGA-HV-AA8V      TCGA-HV-AA8X 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7925      TCGA-HZ-8637      TCGA-HZ-A49I 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q      TCGA-HZ-A8P0 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7651      TCGA-IB-7652 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A6UG      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUQ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUR      TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-RB-AA9M      TCGA-RL-AAAS      TCGA-S4-A8RO      TCGA-US-A776 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNGTT MUTATED        1      0      0      1      0
  RNGTT WILD-TYPE     36     31     17     20     13
D582V7, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2             117 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2J-AABT      TCGA-2J-AABU      TCGA-2J-AABV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9I7 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IJ      TCGA-3A-A9IL      TCGA-3A-A9IO      TCGA-3A-A9IR 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IS      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9J0      TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-7273 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPZ      TCGA-FB-AAQ0      TCGA-FB-AAQ1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-FB-AAQ6      TCGA-H8-A6C1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HV-A7OL      TCGA-HV-A7OP      TCGA-HV-AA8V      TCGA-HV-AA8X 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7925      TCGA-HZ-8637      TCGA-HZ-A49I 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q      TCGA-HZ-A8P0 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7651      TCGA-IB-7652 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A6UG      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUQ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUR      TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-RB-AA9M      TCGA-RL-AAAS      TCGA-S4-A8RO      TCGA-US-A776 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNGTT MUTATED        1      0      1
  RNGTT WILD-TYPE     70     27     20
D582V8, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2             117 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2J-AABT      TCGA-2J-AABU      TCGA-2J-AABV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQA      TCGA-2L-AAQE      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9I7 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9I9      TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IJ      TCGA-3A-A9IL      TCGA-3A-A9IO      TCGA-3A-A9IR 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IS      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9J0      TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-7273 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A5VM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPU      TCGA-FB-AAPZ      TCGA-FB-AAQ0      TCGA-FB-AAQ1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ2      TCGA-FB-AAQ3      TCGA-FB-AAQ6      TCGA-H8-A6C1 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HV-A7OL      TCGA-HV-A7OP      TCGA-HV-AA8V      TCGA-HV-AA8X 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7925      TCGA-HZ-8637      TCGA-HZ-A49I 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A77O      TCGA-HZ-A77P      TCGA-HZ-A77Q      TCGA-HZ-A8P0 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A8P1      TCGA-HZ-A9TJ      TCGA-IB-7651      TCGA-IB-7652 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A6UG      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUQ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUR      TCGA-IB-AAUS      TCGA-IB-AAUU      TCGA-IB-AAUV 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3      TCGA-LB-A9Q5 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A      TCGA-RB-A7B8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-RB-AA9M      TCGA-RL-AAAS      TCGA-S4-A8RO      TCGA-US-A776 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XD-AAUG      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XN-A8T3      TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YY-A8LH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNGTT MUTATED        0      0      0      0      1      0      1
  RNGTT WILD-TYPE     18      8     10      8     35     25     11
D582V9, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2             115 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2J-AABT      TCGA-2J-AABU      TCGA-2L-AAQA 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQE      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9I7      TCGA-3A-A9I9 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH      TCGA-3A-A9IJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IL      TCGA-3A-A9IO      TCGA-3A-A9IR      TCGA-3A-A9IS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-7273      TCGA-F2-A44G 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPS      TCGA-FB-AAPU 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPZ      TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ3      TCGA-FB-AAQ6      TCGA-H8-A6C1      TCGA-HV-A7OL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HV-AA8V      TCGA-HV-AA8X      TCGA-HZ-7918      TCGA-HZ-7925 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49I      TCGA-HZ-A77O      TCGA-HZ-A77P 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A77Q      TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-RL-AAAS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A77G      TCGA-US-A77J      TCGA-XD-AAUG      TCGA-XD-AAUH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T3      TCGA-XN-A8T5 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNGTT MUTATED        0      1      0      0      0      1
  RNGTT WILD-TYPE     17     31     13     32     16      6
D582V10, multiclass
[1] "Remove cluster labels:" "RNGTT MUTATED"         
clus
  RNGTT MUTATED RNGTT WILD-TYPE 
              2             115 
     TCGA-2J-AAB1      TCGA-2J-AAB4      TCGA-2J-AAB6      TCGA-2J-AAB8 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AAB9      TCGA-2J-AABA      TCGA-2J-AABE      TCGA-2J-AABF 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO      TCGA-2J-AABP 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2J-AABT      TCGA-2J-AABU      TCGA-2L-AAQA 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQE      TCGA-2L-AAQI      TCGA-2L-AAQJ      TCGA-2L-AAQL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9I7      TCGA-3A-A9I9 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IB      TCGA-3A-A9IC      TCGA-3A-A9IH      TCGA-3A-A9IJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IL      TCGA-3A-A9IO      TCGA-3A-A9IR      TCGA-3A-A9IS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3A-A9J0 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-3E-AAAY      TCGA-3E-AAAZ      TCGA-F2-7273      TCGA-F2-A44G 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-F2-A7TX      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPS      TCGA-FB-AAPU 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAPZ      TCGA-FB-AAQ0      TCGA-FB-AAQ1      TCGA-FB-AAQ2 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-FB-AAQ3      TCGA-FB-AAQ6      TCGA-H8-A6C1      TCGA-HV-A7OL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HV-AA8V      TCGA-HV-AA8X      TCGA-HZ-7918      TCGA-HZ-7925 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-8637      TCGA-HZ-A49I      TCGA-HZ-A77O      TCGA-HZ-A77P 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-HZ-A77Q      TCGA-HZ-A8P0      TCGA-HZ-A8P1      TCGA-HZ-A9TJ 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UF      TCGA-IB-A6UG      TCGA-IB-A7LX 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN      TCGA-IB-AAUO 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUP      TCGA-IB-AAUQ      TCGA-IB-AAUR      TCGA-IB-AAUS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-RL-AAAS 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-S4-A8RO      TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-US-A77G      TCGA-US-A77J      TCGA-XD-AAUG      TCGA-XD-AAUH 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T3      TCGA-XN-A8T5 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"RNGTT WILD-TYPE" "RNGTT WILD-TYPE" "RNGTT WILD-TYPE" 

Clustering(583) Variable = C1QTNF7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QTNF7 MUTATED        0      0      3      1
  C1QTNF7 WILD-TYPE     19     53     27     23
D583V1, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               0                53
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QTNF7 MUTATED        1      2      0      1
  C1QTNF7 WILD-TYPE     34     28     34     25
D583V2, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                28
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QTNF7 MUTATED        0      1      0      1      1
  C1QTNF7 WILD-TYPE     29     17     13      8     12
D583V3, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QTNF7 MUTATED        1      1      0      0      1
  C1QTNF7 WILD-TYPE     31     17     12     10      9
D583V4, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QTNF7 MUTATED        0      0      0      3      1
  C1QTNF7 WILD-TYPE     26     20     28     22     19
D583V5, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               3                22
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1QTNF7 MUTATED        4      0      0
  C1QTNF7 WILD-TYPE     44     53     18
D583V6, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               4                44
  CLUS_2               0                53
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QTNF7 MUTATED        0      1      2      1      0
  C1QTNF7 WILD-TYPE     37     30     15     20     13
D583V7, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               2                15
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1QTNF7 MUTATED        2      2      0
  C1QTNF7 WILD-TYPE     69     25     21
D583V8, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               2                25
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1QTNF7 MUTATED        1      0      1      0      1      1      0
  C1QTNF7 WILD-TYPE     17      8      9      8     35     24     12
D583V9, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1QTNF7 MUTATED        0      0      0      3      1      0
  C1QTNF7 WILD-TYPE     17     32     13     29     15      7
D583V10, multiclass
        clus
vv       C1QTNF7 MUTATED C1QTNF7 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(584) Variable = CHMP2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP2A MUTATED        0      0      2      2
  CHMP2A WILD-TYPE     19     53     28     22
D584V1, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              2               28
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP2A MUTATED        1      1      1      1
  CHMP2A WILD-TYPE     34     29     33     25
D584V2, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP2A MUTATED        0      0      0      1      0
  CHMP2A WILD-TYPE     29     18     13      8     13
D584V3, multiclass
[1] "Remove cluster labels:" "CHMP2A MUTATED"        
clus
  CHMP2A MUTATED CHMP2A WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-Z5-AAPL 
"CHMP2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP2A MUTATED        1      0      0      0      0
  CHMP2A WILD-TYPE     31     18     12     10     10
D584V4, multiclass
[1] "Remove cluster labels:" "CHMP2A MUTATED"        
clus
  CHMP2A MUTATED CHMP2A WILD-TYPE 
               1               81 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-LB-A8F3       TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH 
"CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" "CHMP2A WILD-TYPE" 
      TCGA-Z5-AAPL 
"CHMP2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP2A MUTATED        0      0      1      3      0
  CHMP2A WILD-TYPE     26     20     27     22     20
D584V5, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP2A MUTATED        4      0      0
  CHMP2A WILD-TYPE     44     53     18
D584V6, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              4               44
  CLUS_2              0               53
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP2A MUTATED        0      1      2      1      0
  CHMP2A WILD-TYPE     37     30     15     20     13
D584V7, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              2               15
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP2A MUTATED        1      3      0
  CHMP2A WILD-TYPE     70     24     21
D584V8, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              1               70
  CLUS_2              3               24
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHMP2A MUTATED        1      0      2      0      1      0      0
  CHMP2A WILD-TYPE     17      8      8      8     35     25     12
D584V9, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHMP2A MUTATED        0      0      0      4      0      0
  CHMP2A WILD-TYPE     17     32     13     28     16      7
D584V10, multiclass
        clus
vv       CHMP2A MUTATED CHMP2A WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              4               28
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(585) Variable = ATP6V0A4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED        2      1      2      1
  ATP6V0A4 WILD-TYPE     17     52     28     23
D585V1, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                1                 52
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED        2      2      1      1
  ATP6V0A4 WILD-TYPE     33     28     33     25
D585V2, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                2                 28
  CLUS_3                1                 33
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V0A4 MUTATED        0      1      2      1      0
  ATP6V0A4 WILD-TYPE     29     17     11      8     13
D585V3, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                0                 29
  CLUS_2                1                 17
  CLUS_3                2                 11
  CLUS_4                1                  8
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V0A4 MUTATED        2      1      1      0      0
  ATP6V0A4 WILD-TYPE     30     17     11     10     10
D585V4, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                1                 17
  CLUS_3                1                 11
  CLUS_4                0                 10
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V0A4 MUTATED        0      0      3      3      0
  ATP6V0A4 WILD-TYPE     26     20     25     22     20
D585V5, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                0                 20
  CLUS_3                3                 25
  CLUS_4                3                 22
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V0A4 MUTATED        4      2      0
  ATP6V0A4 WILD-TYPE     44     51     18
D585V6, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                2                 51
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V0A4 MUTATED        1      1      1      3      0
  ATP6V0A4 WILD-TYPE     36     30     16     18     13
D585V7, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                1                 30
  CLUS_3                1                 16
  CLUS_4                3                 18
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V0A4 MUTATED        4      2      0
  ATP6V0A4 WILD-TYPE     67     25     21
D585V8, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                4                 67
  CLUS_2                2                 25
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP6V0A4 MUTATED        1      2      1      0      1      0      0
  ATP6V0A4 WILD-TYPE     17      6      9      8     35     25     12
D585V9, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                  6
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                1                 35
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V0A4 MUTATED        2      1      0      2      0      0
  ATP6V0A4 WILD-TYPE     15     31     13     30     16      7
D585V10, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(586) Variable = FANCD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        1      1      1      4
  FANCD2 WILD-TYPE     18     52     29     20
D586V1, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              4               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        1      0      3      3
  FANCD2 WILD-TYPE     34     30     31     23
D586V2, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              3               31
  CLUS_4              3               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCD2 MUTATED        1      0      1      1      0
  FANCD2 WILD-TYPE     28     18     12      8     13
D586V3, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCD2 MUTATED        2      0      1      0      0
  FANCD2 WILD-TYPE     30     18     11     10     10
D586V4, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCD2 MUTATED        1      2      1      1      2
  FANCD2 WILD-TYPE     25     18     27     24     18
D586V5, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               18
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        2      3      2
  FANCD2 WILD-TYPE     46     50     16
D586V6, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              3               50
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCD2 MUTATED        2      2      0      1      2
  FANCD2 WILD-TYPE     35     29     17     20     11
D586V7, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              2               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        5      0      2
  FANCD2 WILD-TYPE     66     27     19
D586V8, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               27
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FANCD2 MUTATED        0      0      1      1      1      3      1
  FANCD2 WILD-TYPE     18      8      9      7     35     22     11
D586V9, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              3               22
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FANCD2 MUTATED        1      3      1      1      1      0
  FANCD2 WILD-TYPE     16     29     12     31     15      7
D586V10, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              3               29
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(587) Variable = ZCCHC11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC11 MUTATED        1      3      3      1
  ZCCHC11 WILD-TYPE     18     50     27     23
D587V1, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               3                50
  CLUS_3               3                27
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC11 MUTATED        2      2      2      2
  ZCCHC11 WILD-TYPE     33     28     32     24
D587V2, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               2                32
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        2      0      1      1      2
  ZCCHC11 WILD-TYPE     27     18     12      8     11
D587V3, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        4      0      1      0      1
  ZCCHC11 WILD-TYPE     28     18     11     10      9
D587V4, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               4                28
  CLUS_2               0                18
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               1                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        1      0      2      3      2
  ZCCHC11 WILD-TYPE     25     20     26     22     18
D587V5, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               2                26
  CLUS_4               3                22
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZCCHC11 MUTATED        4      3      1
  ZCCHC11 WILD-TYPE     44     50     17
D587V6, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               4                44
  CLUS_2               3                50
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        1      4      1      2      0
  ZCCHC11 WILD-TYPE     36     27     16     19     13
D587V7, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               4                27
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZCCHC11 MUTATED        5      2      1
  ZCCHC11 WILD-TYPE     66     25     20
D587V8, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               5                66
  CLUS_2               2                25
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZCCHC11 MUTATED        1      0      1      1      2      3      0
  ZCCHC11 WILD-TYPE     17      8      9      7     34     22     12
D587V9, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               2                34
  CLUS_6               3                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZCCHC11 MUTATED        0      3      1      3      1      0
  ZCCHC11 WILD-TYPE     17     29     12     29     15      7
D587V10, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               3                29
  CLUS_3               1                12
  CLUS_4               3                29
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(588) Variable = GRM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED        2      1      3      2
  GRM1 WILD-TYPE     17     52     27     22
D588V1, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            3             27
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED        2      1      3      2
  GRM1 WILD-TYPE     33     29     31     24
D588V2, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            3             31
  CLUS_4            2             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRM1 MUTATED        4      0      1      1      1
  GRM1 WILD-TYPE     25     18     12      8     12
D588V3, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            4             25
  CLUS_2            0             18
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRM1 MUTATED        4      0      0      1      2
  GRM1 WILD-TYPE     28     18     12      9      8
D588V4, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            4             28
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRM1 MUTATED        2      2      1      1      2
  GRM1 WILD-TYPE     24     18     27     24     18
D588V5, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            2             18
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM1 MUTATED        2      3      3
  GRM1 WILD-TYPE     46     50     15
D588V6, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            3             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRM1 MUTATED        1      2      1      2      2
  GRM1 WILD-TYPE     36     29     16     19     11
D588V7, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            2             19
  CLUS_5            2             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM1 MUTATED        5      0      3
  GRM1 WILD-TYPE     66     27     18
D588V8, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            5             66
  CLUS_2            0             27
  CLUS_3            3             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRM1 MUTATED        0      0      1      1      3      3      0
  GRM1 WILD-TYPE     18      8      9      7     33     22     12
D588V9, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            3             33
  CLUS_6            3             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GRM1 MUTATED        1      1      2      1      3      0
  GRM1 WILD-TYPE     16     31     11     31     13      7
D588V10, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            2             11
  CLUS_4            1             31
  CLUS_5            3             13
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(589) Variable = TNFRSF11A MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF11A MUTATED        0      0      2      2
  TNFRSF11A WILD-TYPE     19     53     28     22
D589V1, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 0                  19
  CLUS_2                 0                  53
  CLUS_3                 2                  28
  CLUS_4                 2                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF11A MUTATED        2      1      0      1
  TNFRSF11A WILD-TYPE     33     29     34     25
D589V2, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 2                  33
  CLUS_2                 1                  29
  CLUS_3                 0                  34
  CLUS_4                 1                  25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF11A MUTATED        1      1      0      1      0
  TNFRSF11A WILD-TYPE     28     17     13      8     13
D589V3, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 1                  28
  CLUS_2                 1                  17
  CLUS_3                 0                  13
  CLUS_4                 1                   8
  CLUS_5                 0                  13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF11A MUTATED        2      1      0      0      0
  TNFRSF11A WILD-TYPE     30     17     12     10     10
D589V4, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 2                  30
  CLUS_2                 1                  17
  CLUS_3                 0                  12
  CLUS_4                 0                  10
  CLUS_5                 0                  10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF11A MUTATED        0      1      0      1      2
  TNFRSF11A WILD-TYPE     26     19     28     24     18
D589V5, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 1                  19
  CLUS_3                 0                  28
  CLUS_4                 1                  24
  CLUS_5                 2                  18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF11A MUTATED        1      2      1
  TNFRSF11A WILD-TYPE     47     51     17
D589V6, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 1                  47
  CLUS_2                 2                  51
  CLUS_3                 1                  17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF11A MUTATED        0      2      0      2      0
  TNFRSF11A WILD-TYPE     37     29     17     19     13
D589V7, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 0                  37
  CLUS_2                 2                  29
  CLUS_3                 0                  17
  CLUS_4                 2                  19
  CLUS_5                 0                  13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF11A MUTATED        3      0      1
  TNFRSF11A WILD-TYPE     68     27     20
D589V8, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 3                  68
  CLUS_2                 0                  27
  CLUS_3                 1                  20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNFRSF11A MUTATED        0      0      1      1      0      1      1
  TNFRSF11A WILD-TYPE     18      8      9      7     36     24     11
D589V9, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 0                  18
  CLUS_2                 0                   8
  CLUS_3                 1                   9
  CLUS_4                 1                   7
  CLUS_5                 0                  36
  CLUS_6                 1                  24
  CLUS_7                 1                  11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFRSF11A MUTATED        0      0      2      1      0      1
  TNFRSF11A WILD-TYPE     17     32     11     31     16      6
D589V10, multiclass
        clus
vv       TNFRSF11A MUTATED TNFRSF11A WILD-TYPE
  CLUS_1                 0                  17
  CLUS_2                 0                  32
  CLUS_3                 2                  11
  CLUS_4                 1                  31
  CLUS_5                 0                  16
  CLUS_6                 1                   6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(590) Variable = ANKRD30A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED        2      2      2      1
  ANKRD30A WILD-TYPE     17     51     28     23
D590V1, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 51
  CLUS_3                2                 28
  CLUS_4                1                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED        3      1      3      0
  ANKRD30A WILD-TYPE     32     29     31     26
D590V2, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                1                 29
  CLUS_3                3                 31
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD30A MUTATED        1      1      1      1      0
  ANKRD30A WILD-TYPE     28     17     12      8     13
D590V3, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                1                 17
  CLUS_3                1                 12
  CLUS_4                1                  8
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD30A MUTATED        2      1      0      0      1
  ANKRD30A WILD-TYPE     30     17     12     10      9
D590V4, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                1                 17
  CLUS_3                0                 12
  CLUS_4                0                 10
  CLUS_5                1                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD30A MUTATED        1      1      2      2      1
  ANKRD30A WILD-TYPE     25     19     26     23     19
D590V5, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                2                 26
  CLUS_4                2                 23
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        3      3      1
  ANKRD30A WILD-TYPE     45     50     17
D590V6, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                3                 50
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD30A MUTATED        1      2      1      2      1
  ANKRD30A WILD-TYPE     36     29     16     19     12
D590V7, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                2                 29
  CLUS_3                1                 16
  CLUS_4                2                 19
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        5      1      1
  ANKRD30A WILD-TYPE     66     26     20
D590V8, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                5                 66
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD30A MUTATED        1      0      1      1      2      2      0
  ANKRD30A WILD-TYPE     17      8      9      7     34     23     12
D590V9, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                1                  7
  CLUS_5                2                 34
  CLUS_6                2                 23
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD30A MUTATED        1      2      1      2      1      0
  ANKRD30A WILD-TYPE     16     30     12     30     15      7
D590V10, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                2                 30
  CLUS_3                1                 12
  CLUS_4                2                 30
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(591) Variable = SNX32 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX32 MUTATED        0      1      2      1
  SNX32 WILD-TYPE     19     52     28     23
D591V1, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX32 MUTATED        1      2      0      1
  SNX32 WILD-TYPE     34     28     34     25
D591V2, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              28
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNX32 MUTATED        0      0      0      1      1
  SNX32 WILD-TYPE     29     18     13      8     12
D591V3, multiclass
[1] "Remove cluster labels:" "SNX32 MUTATED"         
clus
  SNX32 MUTATED SNX32 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-AA2A 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNX32 MUTATED        1      0      1      0      0
  SNX32 WILD-TYPE     31     18     11     10     10
D591V4, multiclass
[1] "Remove cluster labels:" "SNX32 MUTATED"         
clus
  SNX32 MUTATED SNX32 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-AA2A 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" "SNX32 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNX32 MUTATED        0      1      0      2      1
  SNX32 WILD-TYPE     26     19     28     23     19
D591V5, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX32 MUTATED        2      1      1
  SNX32 WILD-TYPE     46     52     17
D591V6, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNX32 MUTATED        0      1      1      2      0
  SNX32 WILD-TYPE     37     30     16     19     13
D591V7, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX32 MUTATED        2      1      1
  SNX32 WILD-TYPE     69     26     20
D591V8, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNX32 MUTATED        0      0      1      1      1      0      1
  SNX32 WILD-TYPE     18      8      9      7     35     25     11
D591V9, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNX32 MUTATED        0      0      1      2      0      1
  SNX32 WILD-TYPE     17     32     12     30     16      6
D591V10, multiclass
        clus
vv       SNX32 MUTATED SNX32 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(592) Variable = BRF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRF1 MUTATED        0      2      1      1
  BRF1 WILD-TYPE     19     51     29     23
D592V1, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            2             51
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRF1 MUTATED        1      0      2      1
  BRF1 WILD-TYPE     34     30     32     25
D592V2, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        1      1      0      1      1
  BRF1 WILD-TYPE     28     17     13      8     12
D592V3, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        2      0      0      0      2
  BRF1 WILD-TYPE     30     18     12     10      8
D592V4, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            0             18
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            2              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        1      0      0      1      1
  BRF1 WILD-TYPE     25     20     28     24     19
D592V5, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRF1 MUTATED        3      0      0
  BRF1 WILD-TYPE     45     53     18
D592V6, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            0             53
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        1      1      0      1      0
  BRF1 WILD-TYPE     36     30     17     20     13
D592V7, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRF1 MUTATED        2      0      1
  BRF1 WILD-TYPE     69     27     20
D592V8, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            0             27
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRF1 MUTATED        0      0      2      0      1      0      0
  BRF1 WILD-TYPE     18      8      8      8     35     25     12
D592V9, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            2              8
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRF1 MUTATED        1      0      0      1      1      0
  BRF1 WILD-TYPE     16     32     13     31     15      7
D592V10, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(593) Variable = TPTE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE MUTATED        2      1      2      4
  TPTE WILD-TYPE     17     52     28     20
D593V1, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            2             17
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            4             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE MUTATED        5      1      3      0
  TPTE WILD-TYPE     30     29     31     26
D593V2, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            5             30
  CLUS_2            1             29
  CLUS_3            3             31
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE MUTATED        3      1      1      1      0
  TPTE WILD-TYPE     26     17     12      8     13
D593V3, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            3             26
  CLUS_2            1             17
  CLUS_3            1             12
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE MUTATED        4      1      0      1      0
  TPTE WILD-TYPE     28     17     12      9     10
D593V4, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            4             28
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE MUTATED        4      0      2      2      1
  TPTE WILD-TYPE     22     20     26     23     19
D593V5, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            4             22
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            2             23
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPTE MUTATED        3      6      0
  TPTE WILD-TYPE     45     47     18
D593V6, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            3             45
  CLUS_2            6             47
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE MUTATED        3      1      2      3      0
  TPTE WILD-TYPE     34     30     15     18     13
D593V7, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             30
  CLUS_3            2             15
  CLUS_4            3             18
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPTE MUTATED        8      1      0
  TPTE WILD-TYPE     63     26     21
D593V8, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            8             63
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPTE MUTATED        1      1      1      1      4      0      0
  TPTE WILD-TYPE     17      7      9      7     32     25     12
D593V9, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            4             32
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPTE MUTATED        1      3      2      2      0      0
  TPTE WILD-TYPE     16     29     11     30     16      7
D593V10, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            1             16
  CLUS_2            3             29
  CLUS_3            2             11
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(594) Variable = EXOSC10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC10 MUTATED        1      1      1      0
  EXOSC10 WILD-TYPE     18     52     29     24
D594V1, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC10 MUTATED        2      0      1      0
  EXOSC10 WILD-TYPE     33     30     33     26
D594V2, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        0      0      1      1      0
  EXOSC10 WILD-TYPE     29     18     12      8     13
D594V3, multiclass
[1] "Remove cluster labels:" "EXOSC10 MUTATED"       
clus
  EXOSC10 MUTATED EXOSC10 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7652 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        1      0      1      0      0
  EXOSC10 WILD-TYPE     31     18     11     10     10
D594V4, multiclass
[1] "Remove cluster labels:" "EXOSC10 MUTATED"       
clus
  EXOSC10 MUTATED EXOSC10 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7652 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" "EXOSC10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        0      0      1      1      1
  EXOSC10 WILD-TYPE     26     20     27     24     19
D594V5, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EXOSC10 MUTATED        2      1      0
  EXOSC10 WILD-TYPE     46     52     18
D594V6, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        1      1      0      1      0
  EXOSC10 WILD-TYPE     36     30     17     20     13
D594V7, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EXOSC10 MUTATED        3      0      0
  EXOSC10 WILD-TYPE     68     27     21
D594V8, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EXOSC10 MUTATED        0      0      1      1      1      0      0
  EXOSC10 WILD-TYPE     18      8      9      7     35     25     12
D594V9, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOSC10 MUTATED        0      0      1      2      0      0
  EXOSC10 WILD-TYPE     17     32     12     30     16      7
D594V10, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(595) Variable = DUSP13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP13 MUTATED        0      1      2      0
  DUSP13 WILD-TYPE     19     52     28     24
D595V1, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP13 MUTATED        2      0      0      1
  DUSP13 WILD-TYPE     33     30     34     25
D595V2, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP13 MUTATED        0      0      1      1      0
  DUSP13 WILD-TYPE     29     18     12      8     13
D595V3, multiclass
[1] "Remove cluster labels:" "DUSP13 MUTATED"        
clus
  DUSP13 MUTATED DUSP13 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP13 MUTATED        1      0      1      0      0
  DUSP13 WILD-TYPE     31     18     11     10     10
D595V4, multiclass
[1] "Remove cluster labels:" "DUSP13 MUTATED"        
clus
  DUSP13 MUTATED DUSP13 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-IB-AAUU       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" "DUSP13 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP13 MUTATED        0      0      1      1      1
  DUSP13 WILD-TYPE     26     20     27     24     19
D595V5, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP13 MUTATED        1      1      1
  DUSP13 WILD-TYPE     47     52     17
D595V6, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP13 MUTATED        1      1      0      1      0
  DUSP13 WILD-TYPE     36     30     17     20     13
D595V7, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP13 MUTATED        2      0      1
  DUSP13 WILD-TYPE     69     27     20
D595V8, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DUSP13 MUTATED        0      0      1      0      1      1      0
  DUSP13 WILD-TYPE     18      8      9      8     35     24     12
D595V9, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DUSP13 MUTATED        0      1      0      1      1      0
  DUSP13 WILD-TYPE     17     31     13     31     15      7
D595V10, multiclass
        clus
vv       DUSP13 MUTATED DUSP13 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(596) Variable = C1ORF110 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF110 MUTATED        0      3      1      0
  C1ORF110 WILD-TYPE     19     50     29     24
D596V1, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                3                 50
  CLUS_3                1                 29
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF110 MUTATED        3      1      0      0
  C1ORF110 WILD-TYPE     32     29     34     26
D596V2, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                1                 29
  CLUS_3                0                 34
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF110 MUTATED        0      0      0      1      1
  C1ORF110 WILD-TYPE     29     18     13      8     12
D596V3, multiclass
[1] "Remove cluster labels:" "C1ORF110 MUTATED"      
clus
  C1ORF110 MUTATED C1ORF110 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FZ-5919 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF110 MUTATED        1      1      0      0      0
  C1ORF110 WILD-TYPE     31     17     12     10     10
D596V4, multiclass
[1] "Remove cluster labels:" "C1ORF110 MUTATED"      
clus
  C1ORF110 MUTATED C1ORF110 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FZ-5919 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HZ-7918         TCGA-HZ-7925 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7885         TCGA-IB-8126 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-LB-A7SX         TCGA-LB-A8F3 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-OE-A75W         TCGA-Q3-A5QY 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-Q3-AA2A         TCGA-RB-A7B8         TCGA-RB-AA9M 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-US-A776         TCGA-US-A779 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-XD-AAUH         TCGA-XD-AAUI         TCGA-XD-AAUL 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-XN-A8T5         TCGA-YB-A89D         TCGA-YH-A8SY 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C1ORF110 WILD-TYPE" "C1ORF110 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF110 MUTATED        1      0      1      2      0
  C1ORF110 WILD-TYPE     25     20     27     23     20
D596V5, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF110 MUTATED        2      2      0
  C1ORF110 WILD-TYPE     46     51     18
D596V6, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                2                 51
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF110 MUTATED        2      0      1      1      0
  C1ORF110 WILD-TYPE     35     31     16     20     13
D596V7, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                0                 31
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF110 MUTATED        3      1      0
  C1ORF110 WILD-TYPE     68     26     21
D596V8, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF110 MUTATED        1      0      1      0      2      0      0
  C1ORF110 WILD-TYPE     17      8      9      8     34     25     12
D596V9, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1ORF110 MUTATED        1      1      0      2      0      0
  C1ORF110 WILD-TYPE     16     31     13     30     16      7
D596V10, multiclass
        clus
vv       C1ORF110 MUTATED C1ORF110 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(597) Variable = PCOLCE2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        0      2      1      0
  PCOLCE2 WILD-TYPE     19     51     29     24
D597V1, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        1      0      2      0
  PCOLCE2 WILD-TYPE     34     30     32     26
D597V2, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                30
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCOLCE2 MUTATED        0      0      0      1      1
  PCOLCE2 WILD-TYPE     29     18     13      8     12
D597V3, multiclass
[1] "Remove cluster labels:" "PCOLCE2 MUTATED"       
clus
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAQ1 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7652 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCOLCE2 MUTATED        1      0      0      0      1
  PCOLCE2 WILD-TYPE     31     18     12     10      9
D597V4, multiclass
[1] "Remove cluster labels:" "PCOLCE2 MUTATED"       
clus
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAQ1 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7652 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCOLCE2 MUTATED        0      0      2      1      0
  PCOLCE2 WILD-TYPE     26     20     26     24     20
D597V5, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               2                26
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCOLCE2 MUTATED        2      1      0
  PCOLCE2 WILD-TYPE     46     52     18
D597V6, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCOLCE2 MUTATED        2      0      0      1      0
  PCOLCE2 WILD-TYPE     35     31     17     20     13
D597V7, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCOLCE2 MUTATED        3      0      0
  PCOLCE2 WILD-TYPE     68     27     21
D597V8, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCOLCE2 MUTATED        0      1      1      0      1      0      0
  PCOLCE2 WILD-TYPE     18      7      9      8     35     25     12
D597V9, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCOLCE2 MUTATED        1      1      0      1      0      0
  PCOLCE2 WILD-TYPE     16     31     13     31     16      7
D597V10, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(598) Variable = FLVCR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLVCR1 MUTATED        0      1      1      1
  FLVCR1 WILD-TYPE     19     52     29     23
D598V1, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLVCR1 MUTATED        1      0      1      1
  FLVCR1 WILD-TYPE     34     30     33     25
D598V2, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLVCR1 MUTATED        0      0      1      1      0
  FLVCR1 WILD-TYPE     29     18     12      8     13
D598V3, multiclass
[1] "Remove cluster labels:" "FLVCR1 MUTATED"        
clus
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLVCR1 MUTATED        1      0      1      0      0
  FLVCR1 WILD-TYPE     31     18     11     10     10
D598V4, multiclass
[1] "Remove cluster labels:" "FLVCR1 MUTATED"        
clus
  FLVCR1 MUTATED FLVCR1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" "FLVCR1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLVCR1 MUTATED        0      0      1      1      1
  FLVCR1 WILD-TYPE     26     20     27     24     19
D598V5, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        2      1      0
  FLVCR1 WILD-TYPE     46     52     18
D598V6, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLVCR1 MUTATED        1      1      0      1      0
  FLVCR1 WILD-TYPE     36     30     17     20     13
D598V7, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FLVCR1 MUTATED        3      0      0
  FLVCR1 WILD-TYPE     68     27     21
D598V8, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FLVCR1 MUTATED        0      0      1      0      1      1      0
  FLVCR1 WILD-TYPE     18      8      9      8     35     24     12
D598V9, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLVCR1 MUTATED        0      0      1      2      0      0
  FLVCR1 WILD-TYPE     17     32     12     30     16      7
D598V10, multiclass
        clus
vv       FLVCR1 MUTATED FLVCR1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(599) Variable = EXOSC5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC5 MUTATED        0      2      1      1
  EXOSC5 WILD-TYPE     19     51     29     23
D599V1, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC5 MUTATED        3      0      1      0
  EXOSC5 WILD-TYPE     32     30     33     26
D599V2, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC5 MUTATED        3      0      0      1      0
  EXOSC5 WILD-TYPE     26     18     13      8     13
D599V3, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              3               26
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC5 MUTATED        4      0      0      0      0
  EXOSC5 WILD-TYPE     28     18     12     10     10
D599V4, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              4               28
  CLUS_2              0               18
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC5 MUTATED        2      1      0      1      0
  EXOSC5 WILD-TYPE     24     19     28     24     20
D599V5, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EXOSC5 MUTATED        3      1      0
  EXOSC5 WILD-TYPE     45     52     18
D599V6, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC5 MUTATED        2      0      0      1      1
  EXOSC5 WILD-TYPE     35     31     17     20     12
D599V7, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EXOSC5 MUTATED        3      0      1
  EXOSC5 WILD-TYPE     68     27     20
D599V8, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EXOSC5 MUTATED        0      0      1      0      2      1      0
  EXOSC5 WILD-TYPE     18      8      9      8     34     24     12
D599V9, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOSC5 MUTATED        1      1      0      1      1      0
  EXOSC5 WILD-TYPE     16     31     13     31     15      7
D599V10, multiclass
        clus
vv       EXOSC5 MUTATED EXOSC5 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(600) Variable = PDXDC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDXDC1 MUTATED        0      2      1      0
  PDXDC1 WILD-TYPE     19     51     29     24
D600V1, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDXDC1 MUTATED        1      0      2      0
  PDXDC1 WILD-TYPE     34     30     32     26
D600V2, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDXDC1 MUTATED        0      0      0      1      1
  PDXDC1 WILD-TYPE     29     18     13      8     12
D600V3, multiclass
[1] "Remove cluster labels:" "PDXDC1 MUTATED"        
clus
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAQ1 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDXDC1 MUTATED        1      0      0      0      1
  PDXDC1 WILD-TYPE     31     18     12     10      9
D600V4, multiclass
[1] "Remove cluster labels:" "PDXDC1 MUTATED"        
clus
  PDXDC1 MUTATED PDXDC1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAQ1 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" "PDXDC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDXDC1 MUTATED        1      0      1      1      0
  PDXDC1 WILD-TYPE     25     20     27     24     20
D600V5, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        3      0      0
  PDXDC1 WILD-TYPE     45     53     18
D600V6, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              0               53
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDXDC1 MUTATED        2      0      0      1      0
  PDXDC1 WILD-TYPE     35     31     17     20     13
D600V7, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDXDC1 MUTATED        2      1      0
  PDXDC1 WILD-TYPE     69     26     21
D600V8, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDXDC1 MUTATED        1      0      1      0      1      0      0
  PDXDC1 WILD-TYPE     17      8      9      8     35     25     12
D600V9, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDXDC1 MUTATED        0      1      0      2      0      0
  PDXDC1 WILD-TYPE     17     31     13     30     16      7
D600V10, multiclass
        clus
vv       PDXDC1 MUTATED PDXDC1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(601) Variable = C11ORF63 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF63 MUTATED        2      1      0      0
  C11ORF63 WILD-TYPE     17     52     30     24
D601V1, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                1                 52
  CLUS_3                0                 30
  CLUS_4                0                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF63 MUTATED        1      1      1      0
  C11ORF63 WILD-TYPE     34     29     33     26
D601V2, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 29
  CLUS_3                1                 33
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        2      0      0      1      0
  C11ORF63 WILD-TYPE     27     18     13      8     13
D601V3, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                0                 18
  CLUS_3                0                 13
  CLUS_4                1                  8
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        2      0      0      1      0
  C11ORF63 WILD-TYPE     30     18     12      9     10
D601V4, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                0                 18
  CLUS_3                0                 12
  CLUS_4                1                  9
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        0      0      1      2      0
  C11ORF63 WILD-TYPE     26     20     27     23     20
D601V5, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF63 MUTATED        2      1      0
  C11ORF63 WILD-TYPE     46     52     18
D601V6, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                1                 52
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        1      0      2      0      0
  C11ORF63 WILD-TYPE     36     31     15     21     13
D601V7, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                0                 31
  CLUS_3                2                 15
  CLUS_4                0                 21
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF63 MUTATED        2      1      0
  C11ORF63 WILD-TYPE     69     26     21
D601V8, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                1                 26
  CLUS_3                0                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C11ORF63 MUTATED        0      0      0      0      2      0      1
  C11ORF63 WILD-TYPE     18      8     10      8     34     25     11
D601V9, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                0                 10
  CLUS_4                0                  8
  CLUS_5                2                 34
  CLUS_6                0                 25
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF63 MUTATED        0      1      0      2      0      0
  C11ORF63 WILD-TYPE     17     31     13     30     16      7
D601V10, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(602) Variable = FAM71F1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM71F1 MUTATED        1      1      0      1
  FAM71F1 WILD-TYPE     18     52     30     23
D602V1, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               0                30
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM71F1 MUTATED        2      0      0      1
  FAM71F1 WILD-TYPE     33     30     34     25
D602V2, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM71F1 MUTATED        0      1      0      0      0
  FAM71F1 WILD-TYPE     29     17     13      9     13
D602V3, multiclass
[1] "Remove cluster labels:" "FAM71F1 MUTATED"       
clus
  FAM71F1 MUTATED FAM71F1 WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQL 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-Z5-AAPL 
"FAM71F1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM71F1 MUTATED        0      1      0      0      0
  FAM71F1 WILD-TYPE     32     17     12     10     10
D602V4, multiclass
[1] "Remove cluster labels:" "FAM71F1 MUTATED"       
clus
  FAM71F1 MUTATED FAM71F1 WILD-TYPE 
                1                81 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQL 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7651 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" "FAM71F1 WILD-TYPE" 
       TCGA-Z5-AAPL 
"FAM71F1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM71F1 MUTATED        1      0      0      0      2
  FAM71F1 WILD-TYPE     25     20     28     25     18
D602V5, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               0                25
  CLUS_5               2                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM71F1 MUTATED        0      2      1
  FAM71F1 WILD-TYPE     48     51     17
D602V6, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               0                48
  CLUS_2               2                51
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM71F1 MUTATED        1      1      0      0      1
  FAM71F1 WILD-TYPE     36     30     17     21     12
D602V7, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               0                21
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM71F1 MUTATED        2      0      1
  FAM71F1 WILD-TYPE     69     27     20
D602V8, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               0                27
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM71F1 MUTATED        0      0      0      2      0      1      0
  FAM71F1 WILD-TYPE     18      8     10      6     36     24     12
D602V9, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               2                 6
  CLUS_5               0                36
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM71F1 MUTATED        0      1      1      0      1      0
  FAM71F1 WILD-TYPE     17     31     12     32     15      7
D602V10, multiclass
        clus
vv       FAM71F1 MUTATED FAM71F1 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               0                32
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(603) Variable = UBE2Q1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE2Q1 MUTATED        0      3      0      0
  UBE2Q1 WILD-TYPE     19     50     30     24
D603V1, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              0               30
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE2Q1 MUTATED        0      2      1      0
  UBE2Q1 WILD-TYPE     35     28     33     26
D603V2, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              2               28
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        2      0      0      0      1
  UBE2Q1 WILD-TYPE     27     18     13      9     12
D603V3, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              0                9
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        1      0      1      1      0
  UBE2Q1 WILD-TYPE     31     18     11      9     10
D603V4, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              0               18
  CLUS_3              1               11
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        1      1      0      1      0
  UBE2Q1 WILD-TYPE     25     19     28     24     20
D603V5, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBE2Q1 MUTATED        2      1      0
  UBE2Q1 WILD-TYPE     46     52     18
D603V6, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        2      0      0      1      0
  UBE2Q1 WILD-TYPE     35     31     17     20     13
D603V7, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBE2Q1 MUTATED        2      1      0
  UBE2Q1 WILD-TYPE     69     26     21
D603V8, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBE2Q1 MUTATED        1      0      1      0      1      0      0
  UBE2Q1 WILD-TYPE     17      8      9      8     35     25     12
D603V9, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBE2Q1 MUTATED        1      1      0      1      0      0
  UBE2Q1 WILD-TYPE     16     31     13     31     16      7
D603V10, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(604) Variable = GALNT10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALNT10 MUTATED        1      3      1      0
  GALNT10 WILD-TYPE     18     50     29     24
D604V1, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               3                50
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALNT10 MUTATED        1      2      2      0
  GALNT10 WILD-TYPE     34     28     32     26
D604V2, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                28
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNT10 MUTATED        2      1      0      1      1
  GALNT10 WILD-TYPE     27     17     13      8     12
D604V3, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNT10 MUTATED        2      1      1      1      0
  GALNT10 WILD-TYPE     30     17     11      9     10
D604V4, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               1                11
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNT10 MUTATED        2      0      0      3      0
  GALNT10 WILD-TYPE     24     20     28     22     20
D604V5, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               3                22
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GALNT10 MUTATED        3      2      0
  GALNT10 WILD-TYPE     45     51     18
D604V6, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNT10 MUTATED        1      0      2      2      0
  GALNT10 WILD-TYPE     36     31     15     19     13
D604V7, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               2                15
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GALNT10 MUTATED        3      2      0
  GALNT10 WILD-TYPE     68     25     21
D604V8, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               2                25
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GALNT10 MUTATED        1      0      2      0      2      0      0
  GALNT10 WILD-TYPE     17      8      8      8     34     25     12
D604V9, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GALNT10 MUTATED        0      1      1      3      0      0
  GALNT10 WILD-TYPE     17     31     12     29     16      7
D604V10, multiclass
        clus
vv       GALNT10 MUTATED GALNT10 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               1                12
  CLUS_4               3                29
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(605) Variable = PPL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      1      3      0
  PPL WILD-TYPE     19     52     27     24
D605V1, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           0            19
  CLUS_2           1            52
  CLUS_3           3            27
  CLUS_4           0            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        2      0      0      2
  PPL WILD-TYPE     33     30     34     24
D605V2, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           2            33
  CLUS_2           0            30
  CLUS_3           0            34
  CLUS_4           2            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        1      0      0      1      1
  PPL WILD-TYPE     28     18     13      8     12
D605V3, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            28
  CLUS_2           0            18
  CLUS_3           0            13
  CLUS_4           1             8
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        3      0      0      0      0
  PPL WILD-TYPE     29     18     12     10     10
D605V4, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3            29
  CLUS_2           0            18
  CLUS_3           0            12
  CLUS_4           0            10
  CLUS_5           0            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        1      0      0      1      2
  PPL WILD-TYPE     25     20     28     24     18
D605V5, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            25
  CLUS_2           0            20
  CLUS_3           0            28
  CLUS_4           1            24
  CLUS_5           2            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        1      2      1
  PPL WILD-TYPE     47     51     17
D605V6, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            47
  CLUS_2           2            51
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        1      2      0      1      0
  PPL WILD-TYPE     36     29     17     20     13
D605V7, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            36
  CLUS_2           2            29
  CLUS_3           0            17
  CLUS_4           1            20
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        3      0      1
  PPL WILD-TYPE     68     27     20
D605V8, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3            68
  CLUS_2           0            27
  CLUS_3           1            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPL MUTATED        0      0      1      0      1      1      1
  PPL WILD-TYPE     18      8      9      8     35     24     11
D605V9, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           0             8
  CLUS_5           1            35
  CLUS_6           1            24
  CLUS_7           1            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPL MUTATED        1      1      0      1      1      0
  PPL WILD-TYPE     16     31     13     31     15      7
D605V10, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            16
  CLUS_2           1            31
  CLUS_3           0            13
  CLUS_4           1            31
  CLUS_5           1            15
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(606) Variable = CDC42BPG MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPG MUTATED        1      0      2      2
  CDC42BPG WILD-TYPE     18     53     28     22
D606V1, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                0                 53
  CLUS_3                2                 28
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPG MUTATED        2      3      0      0
  CDC42BPG WILD-TYPE     33     27     34     26
D606V2, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                3                 27
  CLUS_3                0                 34
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42BPG MUTATED        0      0      1      2      0
  CDC42BPG WILD-TYPE     29     18     12      7     13
D606V3, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                0                 29
  CLUS_2                0                 18
  CLUS_3                1                 12
  CLUS_4                2                  7
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42BPG MUTATED        1      0      1      1      0
  CDC42BPG WILD-TYPE     31     18     11      9     10
D606V4, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                0                 18
  CLUS_3                1                 11
  CLUS_4                1                  9
  CLUS_5                0                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42BPG MUTATED        1      1      0      2      0
  CDC42BPG WILD-TYPE     25     19     28     23     20
D606V5, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 19
  CLUS_3                0                 28
  CLUS_4                2                 23
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42BPG MUTATED        2      1      1
  CDC42BPG WILD-TYPE     46     52     17
D606V6, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                1                 52
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42BPG MUTATED        0      0      1      3      0
  CDC42BPG WILD-TYPE     37     31     16     18     13
D606V7, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                0                 31
  CLUS_3                1                 16
  CLUS_4                3                 18
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42BPG MUTATED        2      1      1
  CDC42BPG WILD-TYPE     69     26     20
D606V8, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC42BPG MUTATED        0      0      1      0      1      0      1
  CDC42BPG WILD-TYPE     18      8      9      8     35     25     11
D606V9, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                0                  8
  CLUS_5                1                 35
  CLUS_6                0                 25
  CLUS_7                1                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC42BPG MUTATED        0      0      0      2      0      1
  CDC42BPG WILD-TYPE     17     32     13     30     16      6
D606V10, multiclass
        clus
vv       CDC42BPG MUTATED CDC42BPG WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                0                 32
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                0                 16
  CLUS_6                1                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(607) Variable = THBS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS1 MUTATED        0      2      2      3
  THBS1 WILD-TYPE     19     51     28     21
D607V1, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             3              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS1 MUTATED        3      2      0      2
  THBS1 WILD-TYPE     32     28     34     24
D607V2, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             2              28
  CLUS_3             0              34
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS1 MUTATED        1      0      1      1      0
  THBS1 WILD-TYPE     28     18     12      8     13
D607V3, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS1 MUTATED        3      0      0      0      0
  THBS1 WILD-TYPE     29     18     12     10     10
D607V4, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS1 MUTATED        2      0      0      3      2
  THBS1 WILD-TYPE     24     20     28     22     18
D607V5, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS1 MUTATED        3      3      1
  THBS1 WILD-TYPE     45     50     17
D607V6, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS1 MUTATED        0      2      2      2      1
  THBS1 WILD-TYPE     37     29     15     19     12
D607V7, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             2              15
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS1 MUTATED        4      2      1
  THBS1 WILD-TYPE     67     25     20
D607V8, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THBS1 MUTATED        1      1      1      1      1      1      0
  THBS1 WILD-TYPE     17      7      9      7     35     24     12
D607V9, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THBS1 MUTATED        0      1      1      3      1      0
  THBS1 WILD-TYPE     17     31     12     29     15      7
D607V10, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(608) Variable = LAMA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA3 MUTATED        0      2      1      1
  LAMA3 WILD-TYPE     19     51     29     23
D608V1, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA3 MUTATED        2      1      1      0
  LAMA3 WILD-TYPE     33     29     33     26
D608V2, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA3 MUTATED        1      0      0      1      0
  LAMA3 WILD-TYPE     28     18     13      8     13
D608V3, multiclass
[1] "Remove cluster labels:" "LAMA3 MUTATED"         
clus
  LAMA3 MUTATED LAMA3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-Z5-AAPL 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA3 MUTATED        2      0      0      0      0
  LAMA3 WILD-TYPE     30     18     12     10     10
D608V4, multiclass
[1] "Remove cluster labels:" "LAMA3 MUTATED"         
clus
  LAMA3 MUTATED LAMA3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-Z5-AAPL 
"LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" "LAMA3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA3 MUTATED        2      0      0      2      0
  LAMA3 WILD-TYPE     24     20     28     23     20
D608V5, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA3 MUTATED        2      2      0
  LAMA3 WILD-TYPE     46     51     18
D608V6, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA3 MUTATED        1      0      1      2      0
  LAMA3 WILD-TYPE     36     31     16     19     13
D608V7, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA3 MUTATED        3      1      0
  LAMA3 WILD-TYPE     68     26     21
D608V8, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAMA3 MUTATED        1      0      2      0      1      0      0
  LAMA3 WILD-TYPE     17      8      8      8     35     25     12
D608V9, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LAMA3 MUTATED        1      1      0      2      0      0
  LAMA3 WILD-TYPE     16     31     13     30     16      7
D608V10, multiclass
        clus
vv       LAMA3 MUTATED LAMA3 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(609) Variable = DYRK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        0      1      1      1
  DYRK4 WILD-TYPE     19     52     29     23
D609V1, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        2      0      1      0
  DYRK4 WILD-TYPE     33     30     33     26
D609V2, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        2      0      0      1      0
  DYRK4 WILD-TYPE     27     18     13      8     13
D609V3, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        2      0      0      1      0
  DYRK4 WILD-TYPE     30     18     12      9     10
D609V4, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        2      0      0      1      0
  DYRK4 WILD-TYPE     24     20     28     24     20
D609V5, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        1      2      0
  DYRK4 WILD-TYPE     47     51     18
D609V6, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        1      0      0      2      0
  DYRK4 WILD-TYPE     36     31     17     19     13
D609V7, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        3      0      0
  DYRK4 WILD-TYPE     68     27     21
D609V8, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DYRK4 MUTATED        0      0      1      0      2      0      0
  DYRK4 WILD-TYPE     18      8      9      8     34     25     12
D609V9, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYRK4 MUTATED        0      1      1      1      0      0
  DYRK4 WILD-TYPE     17     31     12     31     16      7
D609V10, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(610) Variable = HNRNPH1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH1 MUTATED        1      1      1      1
  HNRNPH1 WILD-TYPE     18     52     29     23
D610V1, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH1 MUTATED        3      0      1      0
  HNRNPH1 WILD-TYPE     32     30     33     26
D610V2, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPH1 MUTATED        1      1      0      1      0
  HNRNPH1 WILD-TYPE     28     17     13      8     13
D610V3, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPH1 MUTATED        1      1      0      1      0
  HNRNPH1 WILD-TYPE     31     17     12      9     10
D610V4, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPH1 MUTATED        2      0      1      1      0
  HNRNPH1 WILD-TYPE     24     20     27     24     20
D610V5, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HNRNPH1 MUTATED        1      3      0
  HNRNPH1 WILD-TYPE     47     50     18
D610V6, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPH1 MUTATED        2      0      0      2      0
  HNRNPH1 WILD-TYPE     35     31     17     19     13
D610V7, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HNRNPH1 MUTATED        4      0      0
  HNRNPH1 WILD-TYPE     67     27     21
D610V8, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNRNPH1 MUTATED        0      0      1      0      3      0      0
  HNRNPH1 WILD-TYPE     18      8      9      8     33     25     12
D610V9, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               3                33
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNRNPH1 MUTATED        0      2      1      1      0      0
  HNRNPH1 WILD-TYPE     17     30     12     31     16      7
D610V10, multiclass
        clus
vv       HNRNPH1 MUTATED HNRNPH1 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               1                12
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(611) Variable = UGT1A10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A10 MUTATED        1      2      0      1
  UGT1A10 WILD-TYPE     18     51     30     23
D611V1, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                51
  CLUS_3               0                30
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A10 MUTATED        0      1      3      0
  UGT1A10 WILD-TYPE     35     29     31     26
D611V2, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               0                35
  CLUS_2               1                29
  CLUS_3               3                31
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A10 MUTATED        2      0      0      0      1
  UGT1A10 WILD-TYPE     27     18     13      9     12
D611V3, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                18
  CLUS_3               0                13
  CLUS_4               0                 9
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A10 MUTATED        2      0      1      0      0
  UGT1A10 WILD-TYPE     30     18     11     10     10
D611V4, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               0                18
  CLUS_3               1                11
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A10 MUTATED        2      1      0      1      0
  UGT1A10 WILD-TYPE     24     19     28     24     20
D611V5, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  UGT1A10 MUTATED        1      3      0
  UGT1A10 WILD-TYPE     47     50     18
D611V6, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               3                50
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A10 MUTATED        3      0      1      0      0
  UGT1A10 WILD-TYPE     34     31     16     21     13
D611V7, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               0                21
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  UGT1A10 MUTATED        3      1      0
  UGT1A10 WILD-TYPE     68     26     21
D611V8, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UGT1A10 MUTATED        0      0      0      0      2      1      1
  UGT1A10 WILD-TYPE     18      8     10      8     34     24     11
D611V9, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UGT1A10 MUTATED        1      2      0      1      0      0
  UGT1A10 WILD-TYPE     16     30     13     31     16      7
D611V10, multiclass
        clus
vv       UGT1A10 MUTATED UGT1A10 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(612) Variable = TEKT4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEKT4 MUTATED        1      2      1      2
  TEKT4 WILD-TYPE     18     51     29     22
D612V1, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             2              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEKT4 MUTATED        2      1      1      2
  TEKT4 WILD-TYPE     33     29     33     24
D612V2, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEKT4 MUTATED        2      0      0      2      0
  TEKT4 WILD-TYPE     27     18     13      7     13
D612V3, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEKT4 MUTATED        3      0      0      1      0
  TEKT4 WILD-TYPE     29     18     12      9     10
D612V4, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEKT4 MUTATED        0      1      1      3      1
  TEKT4 WILD-TYPE     26     19     27     22     19
D612V5, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             3              22
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        3      2      1
  TEKT4 WILD-TYPE     45     51     17
D612V6, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEKT4 MUTATED        1      1      1      2      1
  TEKT4 WILD-TYPE     36     30     16     19     12
D612V7, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             1              16
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEKT4 MUTATED        3      2      1
  TEKT4 WILD-TYPE     68     25     20
D612V8, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             2              25
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TEKT4 MUTATED        0      0      1      0      2      2      1
  TEKT4 WILD-TYPE     18      8      9      8     34     23     11
D612V9, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TEKT4 MUTATED        0      0      2      3      1      0
  TEKT4 WILD-TYPE     17     32     11     29     15      7
D612V10, multiclass
        clus
vv       TEKT4 MUTATED TEKT4 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             2              11
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(613) Variable = PHTF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHTF2 MUTATED        0      2      2      0
  PHTF2 WILD-TYPE     19     51     28     24
D613V1, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHTF2 MUTATED        1      1      1      1
  PHTF2 WILD-TYPE     34     29     33     25
D613V2, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF2 MUTATED        0      0      0      1      0
  PHTF2 WILD-TYPE     29     18     13      8     13
D613V3, multiclass
[1] "Remove cluster labels:" "PHTF2 MUTATED"         
clus
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PHTF2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF2 MUTATED        1      0      0      0      0
  PHTF2 WILD-TYPE     31     18     12     10     10
D613V4, multiclass
[1] "Remove cluster labels:" "PHTF2 MUTATED"         
clus
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"PHTF2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF2 MUTATED        0      2      1      1      0
  PHTF2 WILD-TYPE     26     18     27     24     20
D613V5, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHTF2 MUTATED        1      2      1
  PHTF2 WILD-TYPE     47     51     17
D613V6, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF2 MUTATED        1      0      0      2      1
  PHTF2 WILD-TYPE     36     31     17     19     12
D613V7, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHTF2 MUTATED        3      0      1
  PHTF2 WILD-TYPE     68     27     20
D613V8, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHTF2 MUTATED        0      2      1      0      0      0      1
  PHTF2 WILD-TYPE     18      6      9      8     36     25     11
D613V9, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHTF2 MUTATED        2      0      0      1      0      1
  PHTF2 WILD-TYPE     15     32     13     31     16      6
D613V10, multiclass
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(614) Variable = CDC6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        1      0      1      1
  CDC6 WILD-TYPE     18     53     29     23
D614V1, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            0             53
  CLUS_3            1             29
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        1      0      2      0
  CDC6 WILD-TYPE     34     30     32     26
D614V2, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            0             30
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        1      1      0      1      0
  CDC6 WILD-TYPE     28     17     13      8     13
D614V3, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        2      1      0      0      0
  CDC6 WILD-TYPE     30     17     12     10     10
D614V4, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        2      0      0      1      0
  CDC6 WILD-TYPE     24     20     28     24     20
D614V5, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        2      1      0
  CDC6 WILD-TYPE     46     52     18
D614V6, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        1      0      1      1      0
  CDC6 WILD-TYPE     36     31     16     20     13
D614V7, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        3      0      0
  CDC6 WILD-TYPE     68     27     21
D614V8, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            0             27
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC6 MUTATED        0      0      1      0      2      0      0
  CDC6 WILD-TYPE     18      8      9      8     34     25     12
D614V9, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC6 MUTATED        1      1      0      1      0      0
  CDC6 WILD-TYPE     16     31     13     31     16      7
D614V10, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(615) Variable = PRKDC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED        1      1      1      0
  PRKDC WILD-TYPE     18     52     29     24
D615V1, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED        1      0      2      0
  PRKDC WILD-TYPE     34     30     32     26
D615V2, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             2              32
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKDC MUTATED        1      1      0      1      0
  PRKDC WILD-TYPE     28     17     13      8     13
D615V3, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKDC MUTATED        2      1      0      0      0
  PRKDC WILD-TYPE     30     17     12     10     10
D615V4, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKDC MUTATED        0      0      2      1      0
  PRKDC WILD-TYPE     26     20     26     24     20
D615V5, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKDC MUTATED        1      2      0
  PRKDC WILD-TYPE     47     51     18
D615V6, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKDC MUTATED        1      1      0      1      0
  PRKDC WILD-TYPE     36     30     17     20     13
D615V7, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKDC MUTATED        3      0      0
  PRKDC WILD-TYPE     68     27     21
D615V8, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKDC MUTATED        0      0      1      0      1      1      0
  PRKDC WILD-TYPE     18      8      9      8     35     24     12
D615V9, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKDC MUTATED        0      2      0      1      0      0
  PRKDC WILD-TYPE     17     30     13     31     16      7
D615V10, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(616) Variable = KDM6B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6B MUTATED        0      1      5      0
  KDM6B WILD-TYPE     19     52     25     24
D616V1, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             5              25
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6B MUTATED        2      3      1      0
  KDM6B WILD-TYPE     33     27     33     26
D616V2, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              27
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6B MUTATED        0      0      1      2      0
  KDM6B WILD-TYPE     29     18     12      7     13
D616V3, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             0              29
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             2               7
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6B MUTATED        1      0      0      1      1
  KDM6B WILD-TYPE     31     18     12      9      9
D616V4, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             1              31
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6B MUTATED        1      0      1      4      0
  KDM6B WILD-TYPE     25     20     27     21     20
D616V5, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             4              21
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6B MUTATED        4      2      0
  KDM6B WILD-TYPE     44     51     18
D616V6, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             4              44
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6B MUTATED        1      0      2      3      0
  KDM6B WILD-TYPE     36     31     15     18     13
D616V7, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             3              18
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6B MUTATED        3      3      0
  KDM6B WILD-TYPE     68     24     21
D616V8, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             3              68
  CLUS_2             3              24
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM6B MUTATED        1      0      2      0      1      0      0
  KDM6B WILD-TYPE     17      8      8      8     35     25     12
D616V9, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6B MUTATED        0      1      0      3      0      0
  KDM6B WILD-TYPE     17     31     13     29     16      7
D616V10, multiclass
        clus
vv       KDM6B MUTATED KDM6B WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(617) Variable = LRRCC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRCC1 MUTATED        2      1      2      0
  LRRCC1 WILD-TYPE     17     52     28     24
D617V1, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRCC1 MUTATED        2      0      2      1
  LRRCC1 WILD-TYPE     33     30     32     25
D617V2, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRCC1 MUTATED        1      0      0      1      1
  LRRCC1 WILD-TYPE     28     18     13      8     12
D617V3, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRCC1 MUTATED        2      1      0      0      0
  LRRCC1 WILD-TYPE     30     17     12     10     10
D617V4, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRCC1 MUTATED        1      0      2      1      1
  LRRCC1 WILD-TYPE     25     20     26     24     19
D617V5, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              2               26
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRCC1 MUTATED        1      4      0
  LRRCC1 WILD-TYPE     47     49     18
D617V6, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              4               49
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRCC1 MUTATED        1      2      0      2      0
  LRRCC1 WILD-TYPE     36     29     17     19     13
D617V7, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRCC1 MUTATED        5      0      0
  LRRCC1 WILD-TYPE     66     27     21
D617V8, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              5               66
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRCC1 MUTATED        0      1      1      1      2      0      0
  LRRCC1 WILD-TYPE     18      7      9      7     34     25     12
D617V9, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRCC1 MUTATED        0      3      1      1      0      0
  LRRCC1 WILD-TYPE     17     29     12     31     16      7
D617V10, multiclass
        clus
vv       LRRCC1 MUTATED LRRCC1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               29
  CLUS_3              1               12
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(618) Variable = ZNF285 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF285 MUTATED        1      1      0      2
  ZNF285 WILD-TYPE     18     52     30     22
D618V1, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              0               30
  CLUS_4              2               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF285 MUTATED        0      3      1      0
  ZNF285 WILD-TYPE     35     27     33     26
D618V2, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              3               27
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        0      2      0      0      0
  ZNF285 WILD-TYPE     29     16     13      9     13
D618V3, multiclass
[1] "Remove cluster labels:" "ZNF285 MUTATED"        
clus
  ZNF285 MUTATED ZNF285 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        0      2      0      0      0
  ZNF285 WILD-TYPE     32     16     12     10     10
D618V4, multiclass
[1] "Remove cluster labels:" "ZNF285 MUTATED"        
clus
  ZNF285 MUTATED ZNF285 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-AAUM       TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-IB-AAUS       TCGA-IB-AAUU       TCGA-IB-AAUV       TCGA-IB-AAUW 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-LB-A8F3       TCGA-OE-A75W       TCGA-Q3-A5QY 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-Q3-AA2A       TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-US-A776       TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-US-A77J       TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
      TCGA-XN-A8T5       TCGA-YB-A89D       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" "ZNF285 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        0      0      1      3      0
  ZNF285 WILD-TYPE     26     20     27     22     20
D618V5, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF285 MUTATED        3      1      0
  ZNF285 WILD-TYPE     45     52     18
D618V6, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              1               52
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        1      0      3      0      0
  ZNF285 WILD-TYPE     36     31     14     21     13
D618V7, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              3               14
  CLUS_4              0               21
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF285 MUTATED        1      3      0
  ZNF285 WILD-TYPE     70     24     21
D618V8, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              3               24
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF285 MUTATED        2      0      0      0      2      0      0
  ZNF285 WILD-TYPE     16      8     10      8     34     25     12
D618V9, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF285 MUTATED        0      1      0      3      0      0
  ZNF285 WILD-TYPE     17     31     13     29     16      7
D618V10, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(619) Variable = RPS6KA5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        0      1      1      2
  RPS6KA5 WILD-TYPE     19     52     29     22
D619V1, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               1                29
  CLUS_4               2                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        2      1      0      1
  RPS6KA5 WILD-TYPE     33     29     34     25
D619V2, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS6KA5 MUTATED        1      0      0      1      0
  RPS6KA5 WILD-TYPE     28     18     13      8     13
D619V3, multiclass
[1] "Remove cluster labels:" "RPS6KA5 MUTATED"       
clus
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-Z5-AAPL 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS6KA5 MUTATED        2      0      0      0      0
  RPS6KA5 WILD-TYPE     30     18     12     10     10
D619V4, multiclass
[1] "Remove cluster labels:" "RPS6KA5 MUTATED"       
clus
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-Z5-AAPL 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS6KA5 MUTATED        1      0      0      2      1
  RPS6KA5 WILD-TYPE     25     20     28     23     19
D619V5, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA5 MUTATED        2      2      0
  RPS6KA5 WILD-TYPE     46     51     18
D619V6, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS6KA5 MUTATED        1      1      1      1      0
  RPS6KA5 WILD-TYPE     36     30     16     20     13
D619V7, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA5 MUTATED        3      1      0
  RPS6KA5 WILD-TYPE     68     26     21
D619V8, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPS6KA5 MUTATED        0      0      1      0      2      1      0
  RPS6KA5 WILD-TYPE     18      8      9      8     34     24     12
D619V9, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               1                24
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPS6KA5 MUTATED        0      2      0      2      0      0
  RPS6KA5 WILD-TYPE     17     30     13     30     16      7
D619V10, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(620) Variable = ASB11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        1      0      2      0
  ASB11 WILD-TYPE     18     53     28     24
D620V1, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        1      0      0      2
  ASB11 WILD-TYPE     34     30     34     24
D620V2, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             2              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        0      1      0      1      0
  ASB11 WILD-TYPE     29     17     13      8     13
D620V3, multiclass
[1] "Remove cluster labels:" "ASB11 MUTATED"         
clus
  ASB11 MUTATED ASB11 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        1      1      0      0      0
  ASB11 WILD-TYPE     31     17     12     10     10
D620V4, multiclass
[1] "Remove cluster labels:" "ASB11 MUTATED"         
clus
  ASB11 MUTATED ASB11 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        0      0      0      1      2
  ASB11 WILD-TYPE     26     20     28     24     18
D620V5, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        2      1      0
  ASB11 WILD-TYPE     46     52     18
D620V6, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        0      2      0      1      0
  ASB11 WILD-TYPE     37     29     17     20     13
D620V7, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        2      1      0
  ASB11 WILD-TYPE     69     26     21
D620V8, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASB11 MUTATED        0      0      1      1      0      1      0
  ASB11 WILD-TYPE     18      8      9      7     36     24     12
D620V9, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1               7
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASB11 MUTATED        0      0      1      1      1      0
  ASB11 WILD-TYPE     17     32     12     31     15      7
D620V10, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(621) Variable = CCT8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT8 MUTATED        0      1      2      1
  CCT8 WILD-TYPE     19     52     28     23
D621V1, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            1             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT8 MUTATED        1      2      1      0
  CCT8 WILD-TYPE     34     28     33     26
D621V2, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            2             28
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT8 MUTATED        0      0      0      2      0
  CCT8 WILD-TYPE     29     18     13      7     13
D621V3, multiclass
[1] "Remove cluster labels:" "CCT8 MUTATED"          
clus
  CCT8 MUTATED CCT8 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5924     TCGA-FZ-5926 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT8 MUTATED        1      0      0      1      0
  CCT8 WILD-TYPE     31     18     12      9     10
D621V4, multiclass
[1] "Remove cluster labels:" "CCT8 MUTATED"          
clus
  CCT8 MUTATED CCT8 WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FB-AAQ6     TCGA-FZ-5919     TCGA-FZ-5920 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-FZ-5921     TCGA-FZ-5922     TCGA-FZ-5924     TCGA-FZ-5926 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" "CCT8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT8 MUTATED        0      1      1      1      0
  CCT8 WILD-TYPE     26     19     27     24     20
D621V5, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT8 MUTATED        1      1      1
  CCT8 WILD-TYPE     47     52     17
D621V6, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            1             47
  CLUS_2            1             52
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT8 MUTATED        0      1      0      1      1
  CCT8 WILD-TYPE     37     30     17     20     12
D621V7, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            1             30
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT8 MUTATED        2      1      0
  CCT8 WILD-TYPE     69     26     21
D621V8, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCT8 MUTATED        0      0      1      0      0      1      1
  CCT8 WILD-TYPE     18      8      9      8     36     24     11
D621V9, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            1             24
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCT8 MUTATED        0      1      0      1      0      1
  CCT8 WILD-TYPE     17     31     13     31     16      6
D621V10, multiclass
        clus
vv       CCT8 MUTATED CCT8 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            1             31
  CLUS_5            0             16
  CLUS_6            1              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(622) Variable = PSMB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB4 MUTATED        1      1      1      1
  PSMB4 WILD-TYPE     18     52     29     23
D622V1, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB4 MUTATED        2      0      1      1
  PSMB4 WILD-TYPE     33     30     33     25
D622V2, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSMB4 MUTATED        2      0      1      0      1
  PSMB4 WILD-TYPE     27     18     12      9     12
D622V3, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             0               9
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSMB4 MUTATED        3      0      1      0      0
  PSMB4 WILD-TYPE     29     18     11     10     10
D622V4, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSMB4 MUTATED        2      0      1      0      1
  PSMB4 WILD-TYPE     24     20     27     25     19
D622V5, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             0              25
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        0      3      1
  PSMB4 WILD-TYPE     48     50     17
D622V6, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             0              48
  CLUS_2             3              50
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSMB4 MUTATED        2      2      0      0      0
  PSMB4 WILD-TYPE     35     29     17     21     13
D622V7, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             0              21
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB4 MUTATED        4      0      0
  PSMB4 WILD-TYPE     67     27     21
D622V8, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMB4 MUTATED        0      1      0      0      2      0      1
  PSMB4 WILD-TYPE     18      7     10      8     34     25     11
D622V9, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PSMB4 MUTATED        2      2      0      0      0      0
  PSMB4 WILD-TYPE     15     30     13     32     16      7
D622V10, multiclass
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             0              32
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(623) Variable = SIGLEC7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC7 MUTATED        1      0      1      1
  SIGLEC7 WILD-TYPE     18     53     29     23
D623V1, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               0                53
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC7 MUTATED        1      0      2      0
  SIGLEC7 WILD-TYPE     34     30     32     26
D623V2, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                30
  CLUS_3               2                32
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC7 MUTATED        0      1      0      1      0
  SIGLEC7 WILD-TYPE     29     17     13      8     13
D623V3, multiclass
[1] "Remove cluster labels:" "SIGLEC7 MUTATED"       
clus
  SIGLEC7 MUTATED SIGLEC7 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC7 MUTATED        1      1      0      0      0
  SIGLEC7 WILD-TYPE     31     17     12     10     10
D623V4, multiclass
[1] "Remove cluster labels:" "SIGLEC7 MUTATED"       
clus
  SIGLEC7 MUTATED SIGLEC7 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" "SIGLEC7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC7 MUTATED        1      0      1      1      0
  SIGLEC7 WILD-TYPE     25     20     27     24     20
D623V5, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SIGLEC7 MUTATED        1      2      0
  SIGLEC7 WILD-TYPE     47     51     18
D623V6, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC7 MUTATED        2      0      0      1      0
  SIGLEC7 WILD-TYPE     35     31     17     20     13
D623V7, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SIGLEC7 MUTATED        3      0      0
  SIGLEC7 WILD-TYPE     68     27     21
D623V8, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIGLEC7 MUTATED        0      0      1      0      2      0      0
  SIGLEC7 WILD-TYPE     18      8      9      8     34     25     12
D623V9, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SIGLEC7 MUTATED        0      2      0      1      0      0
  SIGLEC7 WILD-TYPE     17     30     13     31     16      7
D623V10, multiclass
        clus
vv       SIGLEC7 MUTATED SIGLEC7 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                30
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(624) Variable = ATP2B3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B3 MUTATED        0      0      3      0
  ATP2B3 WILD-TYPE     19     53     27     24
D624V1, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              0               53
  CLUS_3              3               27
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B3 MUTATED        1      0      0      2
  ATP2B3 WILD-TYPE     34     30     34     24
D624V2, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              2               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B3 MUTATED        0      0      0      1      1
  ATP2B3 WILD-TYPE     29     18     13      8     12
D624V3, multiclass
[1] "Remove cluster labels:" "ATP2B3 MUTATED"        
clus
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUU 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B3 MUTATED        1      0      0      0      1
  ATP2B3 WILD-TYPE     31     18     12     10      9
D624V4, multiclass
[1] "Remove cluster labels:" "ATP2B3 MUTATED"        
clus
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A6UF       TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-AAUN       TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUU 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B3 MUTATED        0      0      0      1      2
  ATP2B3 WILD-TYPE     26     20     28     24     18
D624V5, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B3 MUTATED        3      0      0
  ATP2B3 WILD-TYPE     45     53     18
D624V6, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              3               45
  CLUS_2              0               53
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B3 MUTATED        0      2      0      1      0
  ATP2B3 WILD-TYPE     37     29     17     20     13
D624V7, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              2               29
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B3 MUTATED        2      1      0
  ATP2B3 WILD-TYPE     69     26     21
D624V8, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2B3 MUTATED        0      0      1      0      0      2      0
  ATP2B3 WILD-TYPE     18      8      9      8     36     23     12
D624V9, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              2               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP2B3 MUTATED        0      0      0      1      2      0
  ATP2B3 WILD-TYPE     17     32     13     31     14      7
D624V10, multiclass
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              2               14
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(625) Variable = CCDC130 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC130 MUTATED        0      1      2      1
  CCDC130 WILD-TYPE     19     52     28     23
D625V1, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC130 MUTATED        1      2      0      1
  CCDC130 WILD-TYPE     34     28     34     25
D625V2, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                28
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC130 MUTATED        0      0      1      1      1
  CCDC130 WILD-TYPE     29     18     12      8     12
D625V3, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               0                29
  CLUS_2               0                18
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC130 MUTATED        2      1      0      0      0
  CCDC130 WILD-TYPE     30     17     12     10     10
D625V4, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               2                30
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC130 MUTATED        0      1      0      2      1
  CCDC130 WILD-TYPE     26     19     28     23     19
D625V5, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                19
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC130 MUTATED        2      1      1
  CCDC130 WILD-TYPE     46     52     17
D625V6, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               2                46
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC130 MUTATED        0      1      1      2      0
  CCDC130 WILD-TYPE     37     30     16     19     13
D625V7, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC130 MUTATED        2      1      1
  CCDC130 WILD-TYPE     69     26     20
D625V8, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC130 MUTATED        1      0      1      1      0      0      1
  CCDC130 WILD-TYPE     17      8      9      7     36     25     11
D625V9, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC130 MUTATED        0      0      1      2      0      1
  CCDC130 WILD-TYPE     17     32     12     30     16      6
D625V10, multiclass
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               1                12
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(626) Variable = BAT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT2 MUTATED        2      2      2      0
  BAT2 WILD-TYPE     17     51     28     24
D626V1, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            2             17
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT2 MUTATED        2      2      2      0
  BAT2 WILD-TYPE     33     28     32     26
D626V2, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             28
  CLUS_3            2             32
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT2 MUTATED        2      2      0      2      0
  BAT2 WILD-TYPE     27     16     13      7     13
D626V3, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            2             16
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT2 MUTATED        3      2      0      1      0
  BAT2 WILD-TYPE     29     16     12      9     10
D626V4, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            3             29
  CLUS_2            2             16
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT2 MUTATED        2      0      1      2      0
  BAT2 WILD-TYPE     24     20     27     23     20
D626V5, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAT2 MUTATED        2      3      0
  BAT2 WILD-TYPE     46     50     18
D626V6, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            3             50
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT2 MUTATED        2      0      1      1      1
  BAT2 WILD-TYPE     35     31     16     20     12
D626V7, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAT2 MUTATED        4      1      0
  BAT2 WILD-TYPE     67     26     21
D626V8, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAT2 MUTATED        2      0      1      0      2      0      0
  BAT2 WILD-TYPE     16      8      9      8     34     25     12
D626V9, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            2             34
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAT2 MUTATED        1      2      0      2      0      0
  BAT2 WILD-TYPE     16     30     13     30     16      7
D626V10, multiclass
        clus
vv       BAT2 MUTATED BAT2 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            2             30
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(627) Variable = STARD3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3 MUTATED        1      1      1      0
  STARD3 WILD-TYPE     18     52     29     24
D627V1, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3 MUTATED        0      0      2      1
  STARD3 WILD-TYPE     35     30     32     25
D627V2, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              0               30
  CLUS_3              2               32
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STARD3 MUTATED        0      1      0      0      1
  STARD3 WILD-TYPE     29     17     13      9     12
D627V3, multiclass
[1] "Remove cluster labels:" "STARD3 MUTATED"        
clus
  STARD3 MUTATED STARD3 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3E-AAAZ 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A6UF 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STARD3 MUTATED        0      1      0      0      1
  STARD3 WILD-TYPE     32     17     12     10      9
D627V4, multiclass
[1] "Remove cluster labels:" "STARD3 MUTATED"        
clus
  STARD3 MUTATED STARD3 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3E-AAAZ 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7651 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A6UF 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" "STARD3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STARD3 MUTATED        1      0      1      0      1
  STARD3 WILD-TYPE     25     20     27     25     19
D627V5, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              1               27
  CLUS_4              0               25
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STARD3 MUTATED        1      2      0
  STARD3 WILD-TYPE     47     51     18
D627V6, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STARD3 MUTATED        1      1      0      1      0
  STARD3 WILD-TYPE     36     30     17     20     13
D627V7, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STARD3 MUTATED        3      0      0
  STARD3 WILD-TYPE     68     27     21
D627V8, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STARD3 MUTATED        0      0      0      1      2      0      0
  STARD3 WILD-TYPE     18      8     10      7     34     25     12
D627V9, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1                7
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STARD3 MUTATED        0      2      1      0      0      0
  STARD3 WILD-TYPE     17     30     12     32     16      7
D627V10, multiclass
        clus
vv       STARD3 MUTATED STARD3 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              1               12
  CLUS_4              0               32
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(628) Variable = C16ORF70 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF70 MUTATED        0      1      1      2
  C16ORF70 WILD-TYPE     19     52     29     22
D628V1, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                1                 52
  CLUS_3                1                 29
  CLUS_4                2                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF70 MUTATED        1      1      1      1
  C16ORF70 WILD-TYPE     34     29     33     25
D628V2, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 29
  CLUS_3                1                 33
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        0      1      0      1      0
  C16ORF70 WILD-TYPE     29     17     13      8     13
D628V3, multiclass
[1] "Remove cluster labels:" "C16ORF70 MUTATED"      
clus
  C16ORF70 MUTATED C16ORF70 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        1      1      0      0      0
  C16ORF70 WILD-TYPE     31     17     12     10     10
D628V4, multiclass
[1] "Remove cluster labels:" "C16ORF70 MUTATED"      
clus
  C16ORF70 MUTATED C16ORF70 WILD-TYPE 
                 2                 80 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IU 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-3A-A9IX         TCGA-3A-A9IZ         TCGA-3E-AAAZ 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A5VM 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-AAPP         TCGA-FB-AAPQ 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FB-AAPZ         TCGA-FB-AAQ1         TCGA-FB-AAQ6 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FZ-5919         TCGA-FZ-5920         TCGA-FZ-5921 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H8-A6C1         TCGA-HZ-7918 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-IB-7652         TCGA-IB-7885 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SO         TCGA-IB-A5SP 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-A6UF         TCGA-IB-A7LX         TCGA-IB-A7M4 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-AAUM         TCGA-IB-AAUN         TCGA-IB-AAUO 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-AAUP         TCGA-IB-AAUS         TCGA-IB-AAUU 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-IB-AAUV         TCGA-IB-AAUW         TCGA-LB-A7SX 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-LB-A8F3         TCGA-LB-A9Q5         TCGA-OE-A75W 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-Q3-AA2A         TCGA-RB-A7B8 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-RB-AA9M         TCGA-S4-A8RO         TCGA-US-A776 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77G 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-US-A77J         TCGA-XD-AAUH         TCGA-XD-AAUI 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-XD-AAUL         TCGA-XN-A8T5         TCGA-YB-A89D 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
        TCGA-YY-A8LH         TCGA-Z5-AAPL 
"C16ORF70 WILD-TYPE" "C16ORF70 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        0      0      1      2      1
  C16ORF70 WILD-TYPE     26     20     27     23     19
D628V5, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                0                 20
  CLUS_3                1                 27
  CLUS_4                2                 23
  CLUS_5                1                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF70 MUTATED        2      1      1
  C16ORF70 WILD-TYPE     46     52     17
D628V6, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                2                 46
  CLUS_2                1                 52
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        1      0      1      1      1
  C16ORF70 WILD-TYPE     36     31     16     20     12
D628V7, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                0                 31
  CLUS_3                1                 16
  CLUS_4                1                 20
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF70 MUTATED        2      1      1
  C16ORF70 WILD-TYPE     69     26     20
D628V8, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                1                 26
  CLUS_3                1                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C16ORF70 MUTATED        0      0      1      1      2      0      0
  C16ORF70 WILD-TYPE     18      8      9      7     34     25     12
D628V9, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                1                  7
  CLUS_5                2                 34
  CLUS_6                0                 25
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C16ORF70 MUTATED        0      1      0      2      1      0
  C16ORF70 WILD-TYPE     17     31     13     30     15      7
D628V10, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                1                 31
  CLUS_3                0                 13
  CLUS_4                2                 30
  CLUS_5                1                 15
  CLUS_6                0                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(629) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        2      2      1      0
  FBXW7 WILD-TYPE     17     51     29     24
D629V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              17
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        1      1      2      1
  FBXW7 WILD-TYPE     34     29     32     25
D629V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              29
  CLUS_3             2              32
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        2      0      1      1      0
  FBXW7 WILD-TYPE     27     18     12      8     13
D629V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        2      0      1      1      0
  FBXW7 WILD-TYPE     30     18     11      9     10
D629V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             1               9
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        0      0      2      2      1
  FBXW7 WILD-TYPE     26     20     26     23     19
D629V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             2              26
  CLUS_4             2              23
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        2      3      0
  FBXW7 WILD-TYPE     46     50     18
D629V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             3              50
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        1      2      0      2      0
  FBXW7 WILD-TYPE     36     29     17     19     13
D629V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        4      1      0
  FBXW7 WILD-TYPE     67     26     21
D629V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             1              26
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXW7 MUTATED        0      1      3      0      1      0      0
  FBXW7 WILD-TYPE     18      7      7      8     35     25     12
D629V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             3               7
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        1      1      1      2      0      0
  FBXW7 WILD-TYPE     16     31     12     30     16      7
D629V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              31
  CLUS_3             1              12
  CLUS_4             2              30
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(630) Variable = LATS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED        0      1      4      0
  LATS1 WILD-TYPE     19     52     26     24
D630V1, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             4              26
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED        3      0      1      1
  LATS1 WILD-TYPE     32     30     33     25
D630V2, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LATS1 MUTATED        2      0      1      1      0
  LATS1 WILD-TYPE     27     18     12      8     13
D630V3, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LATS1 MUTATED        3      0      1      0      0
  LATS1 WILD-TYPE     29     18     11     10     10
D630V4, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             3              29
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LATS1 MUTATED        1      1      1      1      1
  LATS1 WILD-TYPE     25     19     27     24     19
D630V5, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LATS1 MUTATED        2      0      3
  LATS1 WILD-TYPE     46     53     15
D630V6, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             0              53
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LATS1 MUTATED        1      2      0      1      1
  LATS1 WILD-TYPE     36     29     17     20     12
D630V7, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LATS1 MUTATED        1      1      3
  LATS1 WILD-TYPE     70     26     18
D630V8, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              26
  CLUS_3             3              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LATS1 MUTATED        1      0      1      0      0      2      1
  LATS1 WILD-TYPE     17      8      9      8     36     23     11
D630V9, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LATS1 MUTATED        0      0      0      2      3      0
  LATS1 WILD-TYPE     17     32     13     30     13      7
D630V10, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             3              13
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(631) Variable = LARP1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1B MUTATED        0      1      1      1
  LARP1B WILD-TYPE     19     52     29     23
D631V1, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1B MUTATED        1      1      0      1
  LARP1B WILD-TYPE     34     29     34     25
D631V2, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        1      0      0      1      0
  LARP1B WILD-TYPE     28     18     13      8     13
D631V3, multiclass
[1] "Remove cluster labels:" "LARP1B MUTATED"        
clus
  LARP1B MUTATED LARP1B WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        2      0      0      0      0
  LARP1B WILD-TYPE     30     18     12     10     10
D631V4, multiclass
[1] "Remove cluster labels:" "LARP1B MUTATED"        
clus
  LARP1B MUTATED LARP1B WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-2L-AAQL       TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-3A-A9IH       TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-3E-AAAZ       TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FB-AAQ1       TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FZ-5921       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-FZ-5926       TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-A5SP       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" "LARP1B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        0      2      0      1      0
  LARP1B WILD-TYPE     26     18     28     24     20
D631V5, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP1B MUTATED        1      0      2
  LARP1B WILD-TYPE     47     53     16
D631V6, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              1               47
  CLUS_2              0               53
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        0      0      0      2      1
  LARP1B WILD-TYPE     37     31     17     19     12
D631V7, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              0               37
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP1B MUTATED        1      0      2
  LARP1B WILD-TYPE     70     27     19
D631V8, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              1               70
  CLUS_2              0               27
  CLUS_3              2               19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LARP1B MUTATED        0      0      1      0      0      1      1
  LARP1B WILD-TYPE     18      8      9      8     36     24     11
D631V9, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              0               36
  CLUS_6              1               24
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP1B MUTATED        0      0      0      1      1      1
  LARP1B WILD-TYPE     17     32     13     31     15      6
D631V10, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              1               15
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(632) Variable = PTPN14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        2      1      2      1
  PTPN14 WILD-TYPE     17     52     28     23
D632V1, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2               17
  CLUS_2              1               52
  CLUS_3              2               28
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        3      2      1      0
  PTPN14 WILD-TYPE     32     28     33     26
D632V2, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               28
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN14 MUTATED        2      0      1      1      1
  PTPN14 WILD-TYPE     27     18     12      8     12
D632V3, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2               27
  CLUS_2              0               18
  CLUS_3              1               12
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN14 MUTATED        3      0      2      0      0
  PTPN14 WILD-TYPE     29     18     10     10     10
D632V4, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3               29
  CLUS_2              0               18
  CLUS_3              2               10
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN14 MUTATED        1      1      1      3      0
  PTPN14 WILD-TYPE     25     19     27     22     20
D632V5, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              1               27
  CLUS_4              3               22
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        4      1      1
  PTPN14 WILD-TYPE     44     52     17
D632V6, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4               44
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN14 MUTATED        2      0      2      1      1
  PTPN14 WILD-TYPE     35     31     15     20     12
D632V7, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              2               15
  CLUS_4              1               20
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        3      2      1
  PTPN14 WILD-TYPE     68     25     20
D632V8, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              2               25
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN14 MUTATED        0      0      1      0      2      1      2
  PTPN14 WILD-TYPE     18      8      9      8     34     24     10
D632V9, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              1               24
  CLUS_7              2               10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN14 MUTATED        0      2      0      3      1      0
  PTPN14 WILD-TYPE     17     30     13     29     15      7
D632V10, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               30
  CLUS_3              0               13
  CLUS_4              3               29
  CLUS_5              1               15
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(633) Variable = PHKA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHKA2 MUTATED        0      2      3      1
  PHKA2 WILD-TYPE     19     51     27     23
D633V1, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             2              51
  CLUS_3             3              27
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHKA2 MUTATED        3      0      0      3
  PHKA2 WILD-TYPE     32     30     34     23
D633V2, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             3              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKA2 MUTATED        1      1      0      2      1
  PHKA2 WILD-TYPE     28     17     13      7     12
D633V3, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             2               7
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKA2 MUTATED        2      1      0      1      1
  PHKA2 WILD-TYPE     30     17     12      9      9
D633V4, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             1               9
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKA2 MUTATED        0      2      0      2      2
  PHKA2 WILD-TYPE     26     18     28     23     18
D633V5, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              18
  CLUS_3             0              28
  CLUS_4             2              23
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHKA2 MUTATED        3      1      2
  PHKA2 WILD-TYPE     45     52     16
D633V6, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKA2 MUTATED        1      2      0      2      1
  PHKA2 WILD-TYPE     36     29     17     19     12
D633V7, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             2              19
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHKA2 MUTATED        3      1      2
  PHKA2 WILD-TYPE     68     26     19
D633V8, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              26
  CLUS_3             2              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHKA2 MUTATED        1      0      1      0      1      2      1
  PHKA2 WILD-TYPE     17      8      9      8     35     23     11
D633V9, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             2              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHKA2 MUTATED        0      0      1      3      2      0
  PHKA2 WILD-TYPE     17     32     12     29     14      7
D633V10, multiclass
        clus
vv       PHKA2 MUTATED PHKA2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             3              29
  CLUS_5             2              14
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(634) Variable = ABCC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC3 MUTATED        0      0      3      0
  ABCC3 WILD-TYPE     19     53     27     24
D634V1, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             0              53
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC3 MUTATED        2      0      0      1
  ABCC3 WILD-TYPE     33     30     34     25
D634V2, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC3 MUTATED        1      0      0      1      0
  ABCC3 WILD-TYPE     28     18     13      8     13
D634V3, multiclass
[1] "Remove cluster labels:" "ABCC3 MUTATED"         
clus
  ABCC3 MUTATED ABCC3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A78T 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC3 MUTATED        2      0      0      0      0
  ABCC3 WILD-TYPE     30     18     12     10     10
D634V4, multiclass
[1] "Remove cluster labels:" "ABCC3 MUTATED"         
clus
  ABCC3 MUTATED ABCC3 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A78T 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" "ABCC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC3 MUTATED        0      0      1      2      0
  ABCC3 WILD-TYPE     26     20     27     23     20
D634V5, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             2              23
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC3 MUTATED        2      0      1
  ABCC3 WILD-TYPE     46     53     17
D634V6, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             2              46
  CLUS_2             0              53
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC3 MUTATED        0      2      0      1      0
  ABCC3 WILD-TYPE     37     29     17     20     13
D634V7, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             2              29
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC3 MUTATED        1      1      1
  ABCC3 WILD-TYPE     70     26     20
D634V8, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCC3 MUTATED        0      0      2      0      0      1      0
  ABCC3 WILD-TYPE     18      8      8      8     36     24     12
D634V9, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCC3 MUTATED        0      0      0      2      1      0
  ABCC3 WILD-TYPE     17     32     13     30     15      7
D634V10, multiclass
        clus
vv       ABCC3 MUTATED ABCC3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             2              30
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(635) Variable = CPNE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPNE2 MUTATED        0      0      2      1
  CPNE2 WILD-TYPE     19     53     28     23
D635V1, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             0              53
  CLUS_3             2              28
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPNE2 MUTATED        3      0      0      0
  CPNE2 WILD-TYPE     32     30     34     26
D635V2, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPNE2 MUTATED        1      0      1      1      0
  CPNE2 WILD-TYPE     28     18     12      8     13
D635V3, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             0              18
  CLUS_3             1              12
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPNE2 MUTATED        2      0      1      0      0
  CPNE2 WILD-TYPE     30     18     11     10     10
D635V4, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             1              11
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPNE2 MUTATED        0      1      0      1      1
  CPNE2 WILD-TYPE     26     19     28     24     19
D635V5, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        1      1      1
  CPNE2 WILD-TYPE     47     52     17
D635V6, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPNE2 MUTATED        0      1      0      1      1
  CPNE2 WILD-TYPE     37     30     17     20     12
D635V7, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPNE2 MUTATED        2      0      1
  CPNE2 WILD-TYPE     69     27     20
D635V8, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPNE2 MUTATED        0      0      1      0      0      1      1
  CPNE2 WILD-TYPE     18      8      9      8     36     24     11
D635V9, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPNE2 MUTATED        0      0      1      1      1      0
  CPNE2 WILD-TYPE     17     32     12     31     15      7
D635V10, multiclass
        clus
vv       CPNE2 MUTATED CPNE2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             1              12
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(636) Variable = MICALCL MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICALCL MUTATED        0      1      3      0
  MICALCL WILD-TYPE     19     52     27     24
D636V1, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               3                27
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICALCL MUTATED        3      1      0      0
  MICALCL WILD-TYPE     32     29     34     26
D636V2, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        0      1      0      1      0
  MICALCL WILD-TYPE     29     17     13      8     13
D636V3, multiclass
[1] "Remove cluster labels:" "MICALCL MUTATED"       
clus
  MICALCL MUTATED MICALCL WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-A5SO        TCGA-IB-A5SP 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        1      1      0      0      0
  MICALCL WILD-TYPE     31     17     12     10     10
D636V4, multiclass
[1] "Remove cluster labels:" "MICALCL MUTATED"       
clus
  MICALCL MUTATED MICALCL WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-A5SO        TCGA-IB-A5SP 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" "MICALCL WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        1      0      1      2      0
  MICALCL WILD-TYPE     25     20     27     23     20
D636V5, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MICALCL MUTATED        2      2      0
  MICALCL WILD-TYPE     46     51     18
D636V6, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               2                46
  CLUS_2               2                51
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        0      1      0      2      1
  MICALCL WILD-TYPE     37     30     17     19     12
D636V7, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MICALCL MUTATED        2      1      1
  MICALCL WILD-TYPE     69     26     20
D636V8, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MICALCL MUTATED        0      0      1      1      0      0      1
  MICALCL WILD-TYPE     18      8      9      7     36     25     11
D636V9, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               1                 7
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MICALCL MUTATED        0      0      0      3      0      0
  MICALCL WILD-TYPE     17     32     13     29     16      7
D636V10, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(637) Variable = SPAG9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG9 MUTATED        1      0      3      0
  SPAG9 WILD-TYPE     18     53     27     24
D637V1, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG9 MUTATED        2      1      1      0
  SPAG9 WILD-TYPE     33     29     33     26
D637V2, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG9 MUTATED        1      0      0      1      0
  SPAG9 WILD-TYPE     28     18     13      8     13
D637V3, multiclass
[1] "Remove cluster labels:" "SPAG9 MUTATED"         
clus
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A78T 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG9 MUTATED        2      0      0      0      0
  SPAG9 WILD-TYPE     30     18     12     10     10
D637V4, multiclass
[1] "Remove cluster labels:" "SPAG9 MUTATED"         
clus
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A78T 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG9 MUTATED        1      1      1      1      0
  SPAG9 WILD-TYPE     25     19     27     24     20
D637V5, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              19
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG9 MUTATED        1      1      2
  SPAG9 WILD-TYPE     47     52     16
D637V6, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             1              52
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG9 MUTATED        1      1      0      1      1
  SPAG9 WILD-TYPE     36     30     17     20     12
D637V7, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG9 MUTATED        2      1      1
  SPAG9 WILD-TYPE     69     26     20
D637V8, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPAG9 MUTATED        0      0      1      0      1      1      1
  SPAG9 WILD-TYPE     18      8      9      8     35     24     11
D637V9, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPAG9 MUTATED        0      1      0      1      1      1
  SPAG9 WILD-TYPE     17     31     13     31     15      6
D637V10, multiclass
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              31
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             1               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(638) Variable = SLITRK3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK3 MUTATED        0      2      2      0
  SLITRK3 WILD-TYPE     19     51     28     24
D638V1, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               2                28
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK3 MUTATED        2      2      0      0
  SLITRK3 WILD-TYPE     33     28     34     26
D638V2, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                28
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK3 MUTATED        1      1      0      1      0
  SLITRK3 WILD-TYPE     28     17     13      8     13
D638V3, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK3 MUTATED        1      1      0      1      0
  SLITRK3 WILD-TYPE     31     17     12      9     10
D638V4, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK3 MUTATED        0      0      0      4      0
  SLITRK3 WILD-TYPE     26     20     28     21     20
D638V5, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               4                21
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK3 MUTATED        4      0      0
  SLITRK3 WILD-TYPE     44     53     18
D638V6, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               4                44
  CLUS_2               0                53
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLITRK3 MUTATED        0      1      1      2      0
  SLITRK3 WILD-TYPE     37     30     16     19     13
D638V7, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK3 MUTATED        1      3      0
  SLITRK3 WILD-TYPE     70     24     21
D638V8, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               3                24
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLITRK3 MUTATED        1      0      2      1      0      0      0
  SLITRK3 WILD-TYPE     17      8      8      7     36     25     12
D638V9, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               1                 7
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLITRK3 MUTATED        0      0      0      4      0      0
  SLITRK3 WILD-TYPE     17     32     13     28     16      7
D638V10, multiclass
        clus
vv       SLITRK3 MUTATED SLITRK3 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               4                28
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(639) Variable = HIST1H2BE MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BE MUTATED        0      1      2      0
  HIST1H2BE WILD-TYPE     19     52     28     24
D639V1, multiclass
        clus
vv       HIST1H2BE MUTATED HIST1H2BE WILD-TYPE
  CLUS_1                 0                  19
  CLUS_2                 1                  52
  CLUS_3                 2                  28
  CLUS_4                 0                  24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BE MUTATED        1      2      0      0
  HIST1H2BE WILD-TYPE     34     28     34     26
D639V2, multiclass
        clus
vv       HIST1H2BE MUTATED HIST1H2BE WILD-TYPE
  CLUS_1                 1                  34
  CLUS_2                 2                  28
  CLUS_3                 0                  34
  CLUS_4                 0                  26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BE MUTATED        1      1      0      0      0
  HIST1H2BE WILD-TYPE     28     17     13      9     13
D639V3, multiclass
[1] "Remove cluster labels:" "HIST1H2BE MUTATED"     
clus
  HIST1H2BE MUTATED HIST1H2BE WILD-TYPE 
                  2                  80 
         TCGA-2J-AAB4          TCGA-2J-AAB8          TCGA-2J-AABA 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABF          TCGA-2J-AABH          TCGA-2J-AABK 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABO          TCGA-2J-AABR          TCGA-2L-AAQA 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQI          TCGA-2L-AAQJ          TCGA-2L-AAQL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQM          TCGA-3A-A9I5          TCGA-3A-A9IB 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IU          TCGA-3A-A9IX          TCGA-3A-A9IZ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3E-AAAZ          TCGA-F2-A44G          TCGA-F2-A8YN 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-AAPP 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAPQ          TCGA-FB-AAPZ          TCGA-FB-AAQ1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAQ6          TCGA-FZ-5919          TCGA-FZ-5920 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FZ-5921          TCGA-FZ-5922          TCGA-FZ-5923 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FZ-5924          TCGA-FZ-5926          TCGA-H8-A6C1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-7918          TCGA-HZ-7925          TCGA-IB-7651 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-7652          TCGA-IB-7885          TCGA-IB-8126 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5SO          TCGA-IB-A5SP          TCGA-IB-A5SQ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5SS          TCGA-IB-A5ST          TCGA-IB-A6UF 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A7LX          TCGA-IB-A7M4          TCGA-IB-AAUM 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUN          TCGA-IB-AAUO          TCGA-IB-AAUP 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUS          TCGA-IB-AAUU          TCGA-IB-AAUV 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUW          TCGA-LB-A7SX          TCGA-LB-A8F3 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-LB-A9Q5          TCGA-OE-A75W          TCGA-Q3-A5QY 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-Q3-AA2A          TCGA-RB-A7B8          TCGA-RB-AA9M 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-S4-A8RO          TCGA-US-A776          TCGA-US-A779 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-US-A77E          TCGA-US-A77G          TCGA-US-A77J 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XD-AAUH          TCGA-XD-AAUI          TCGA-XD-AAUL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XN-A8T5          TCGA-YB-A89D          TCGA-YH-A8SY 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-YY-A8LH          TCGA-Z5-AAPL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BE MUTATED        1      1      0      0      0
  HIST1H2BE WILD-TYPE     31     17     12     10     10
D639V4, multiclass
[1] "Remove cluster labels:" "HIST1H2BE MUTATED"     
clus
  HIST1H2BE MUTATED HIST1H2BE WILD-TYPE 
                  2                  80 
         TCGA-2J-AAB4          TCGA-2J-AAB8          TCGA-2J-AABA 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABF          TCGA-2J-AABH          TCGA-2J-AABK 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABO          TCGA-2J-AABR          TCGA-2L-AAQA 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQI          TCGA-2L-AAQJ          TCGA-2L-AAQL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQM          TCGA-3A-A9I5          TCGA-3A-A9IB 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IU          TCGA-3A-A9IX          TCGA-3A-A9IZ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3E-AAAZ          TCGA-F2-A44G          TCGA-F2-A8YN 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-AAPP 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAPQ          TCGA-FB-AAPZ          TCGA-FB-AAQ1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAQ6          TCGA-FZ-5919          TCGA-FZ-5920 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FZ-5921          TCGA-FZ-5922          TCGA-FZ-5923 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FZ-5924          TCGA-FZ-5926          TCGA-H8-A6C1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-7918          TCGA-HZ-7925          TCGA-IB-7651 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-7652          TCGA-IB-7885          TCGA-IB-8126 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5SO          TCGA-IB-A5SP          TCGA-IB-A5SQ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5SS          TCGA-IB-A5ST          TCGA-IB-A6UF 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A7LX          TCGA-IB-A7M4          TCGA-IB-AAUM 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUN          TCGA-IB-AAUO          TCGA-IB-AAUP 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUS          TCGA-IB-AAUU          TCGA-IB-AAUV 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUW          TCGA-LB-A7SX          TCGA-LB-A8F3 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-LB-A9Q5          TCGA-OE-A75W          TCGA-Q3-A5QY 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-Q3-AA2A          TCGA-RB-A7B8          TCGA-RB-AA9M 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-S4-A8RO          TCGA-US-A776          TCGA-US-A779 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-US-A77E          TCGA-US-A77G          TCGA-US-A77J 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XD-AAUH          TCGA-XD-AAUI          TCGA-XD-AAUL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XN-A8T5          TCGA-YB-A89D          TCGA-YH-A8SY 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-YY-A8LH          TCGA-Z5-AAPL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BE MUTATED        0      1      0      2      0
  HIST1H2BE WILD-TYPE     26     19     28     23     20
D639V5, multiclass
        clus
vv       HIST1H2BE MUTATED HIST1H2BE WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 1                  19
  CLUS_3                 0                  28
  CLUS_4                 2                  23
  CLUS_5                 0                  20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BE MUTATED        2      1      0
  HIST1H2BE WILD-TYPE     46     52     18
D639V6, multiclass
        clus
vv       HIST1H2BE MUTATED HIST1H2BE WILD-TYPE
  CLUS_1                 2                  46
  CLUS_2                 1                  52
  CLUS_3                 0                  18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H2BE MUTATED        0      0      1      1      1
  HIST1H2BE WILD-TYPE     37     31     16     20     12
D639V7, multiclass
        clus
vv       HIST1H2BE MUTATED HIST1H2BE WILD-TYPE
  CLUS_1                 0                  37
  CLUS_2                 0                  31
  CLUS_3                 1                  16
  CLUS_4                 1                  20
  CLUS_5                 1                  12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BE MUTATED        0      2      1
  HIST1H2BE WILD-TYPE     71     25     20
D639V8, multiclass
        clus
vv       HIST1H2BE MUTATED HIST1H2BE WILD-TYPE
  CLUS_1                 0                  71
  CLUS_2                 2                  25
  CLUS_3                 1                  20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H2BE MUTATED        1      0      0      0      0      1      0
  HIST1H2BE WILD-TYPE     17      8     10      8     36     24     12
D639V9, multiclass
[1] "Remove cluster labels:" "HIST1H2BE MUTATED"     
clus
  HIST1H2BE MUTATED HIST1H2BE WILD-TYPE 
                  2                 115 
         TCGA-2J-AAB1          TCGA-2J-AAB4          TCGA-2J-AAB6 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AAB8          TCGA-2J-AABA          TCGA-2J-AABE 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABF          TCGA-2J-AABH          TCGA-2J-AABK 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABO          TCGA-2J-AABP          TCGA-2J-AABR 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABT          TCGA-2J-AABU          TCGA-2L-AAQA 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQE          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-2L-AAQM          TCGA-3A-A9I5 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9I7          TCGA-3A-A9I9          TCGA-3A-A9IB 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IC          TCGA-3A-A9IJ          TCGA-3A-A9IL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IO          TCGA-3A-A9IR          TCGA-3A-A9IS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IU          TCGA-3A-A9IV          TCGA-3A-A9IX 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IZ          TCGA-3A-A9J0          TCGA-3E-AAAY 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3E-AAAZ          TCGA-F2-7273          TCGA-F2-A44G 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-F2-A7TX          TCGA-F2-A8YN          TCGA-FB-A5VM 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-AAPP          TCGA-FB-AAPQ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAPS          TCGA-FB-AAPU          TCGA-FB-AAPZ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAQ0          TCGA-FB-AAQ1          TCGA-FB-AAQ2 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAQ3          TCGA-FB-AAQ6          TCGA-H8-A6C1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HV-A7OL          TCGA-HV-AA8V          TCGA-HV-AA8X 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-7918          TCGA-HZ-7925          TCGA-HZ-8637 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-A49I          TCGA-HZ-A77O          TCGA-HZ-A77P 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-A77Q          TCGA-HZ-A8P0          TCGA-HZ-A8P1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-A9TJ          TCGA-IB-7651          TCGA-IB-7652 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-8126          TCGA-IB-A5SO 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UF          TCGA-IB-A6UG 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A7LX          TCGA-IB-A7M4          TCGA-IB-AAUM 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUN          TCGA-IB-AAUO          TCGA-IB-AAUP 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUQ          TCGA-IB-AAUR          TCGA-IB-AAUS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUU          TCGA-IB-AAUV          TCGA-IB-AAUW 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-LB-A7SX          TCGA-LB-A8F3          TCGA-LB-A9Q5 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-OE-A75W          TCGA-Q3-A5QY          TCGA-Q3-AA2A 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-RB-A7B8          TCGA-RB-AA9M          TCGA-RL-AAAS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-S4-A8RO          TCGA-US-A776          TCGA-US-A779 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-US-A77E          TCGA-US-A77G          TCGA-US-A77J 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XD-AAUG          TCGA-XD-AAUH          TCGA-XD-AAUI 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XD-AAUL          TCGA-XN-A8T3          TCGA-XN-A8T5 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-YB-A89D          TCGA-YH-A8SY          TCGA-YY-A8LH 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-Z5-AAPL 
"HIST1H2BE WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H2BE MUTATED        0      0      0      1      1      0
  HIST1H2BE WILD-TYPE     17     32     13     31     15      7
D639V10, multiclass
[1] "Remove cluster labels:" "HIST1H2BE MUTATED"     
clus
  HIST1H2BE MUTATED HIST1H2BE WILD-TYPE 
                  2                 115 
         TCGA-2J-AAB1          TCGA-2J-AAB4          TCGA-2J-AAB6 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AAB8          TCGA-2J-AABA          TCGA-2J-AABE 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABF          TCGA-2J-AABH          TCGA-2J-AABK 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABO          TCGA-2J-AABP          TCGA-2J-AABR 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2J-AABT          TCGA-2J-AABU          TCGA-2L-AAQA 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQE          TCGA-2L-AAQI          TCGA-2L-AAQJ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-2L-AAQL          TCGA-2L-AAQM          TCGA-3A-A9I5 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9I7          TCGA-3A-A9I9          TCGA-3A-A9IB 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IC          TCGA-3A-A9IJ          TCGA-3A-A9IL 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IO          TCGA-3A-A9IR          TCGA-3A-A9IS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IU          TCGA-3A-A9IV          TCGA-3A-A9IX 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3A-A9IZ          TCGA-3A-A9J0          TCGA-3E-AAAY 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-3E-AAAZ          TCGA-F2-7273          TCGA-F2-A44G 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-F2-A7TX          TCGA-F2-A8YN          TCGA-FB-A5VM 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-AAPP          TCGA-FB-AAPQ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAPS          TCGA-FB-AAPU          TCGA-FB-AAPZ 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAQ0          TCGA-FB-AAQ1          TCGA-FB-AAQ2 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-FB-AAQ3          TCGA-FB-AAQ6          TCGA-H8-A6C1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HV-A7OL          TCGA-HV-AA8V          TCGA-HV-AA8X 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-7918          TCGA-HZ-7925          TCGA-HZ-8637 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-A49I          TCGA-HZ-A77O          TCGA-HZ-A77P 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-A77Q          TCGA-HZ-A8P0          TCGA-HZ-A8P1 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-HZ-A9TJ          TCGA-IB-7651          TCGA-IB-7652 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-8126          TCGA-IB-A5SO 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UF          TCGA-IB-A6UG 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-A7LX          TCGA-IB-A7M4          TCGA-IB-AAUM 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUN          TCGA-IB-AAUO          TCGA-IB-AAUP 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUQ          TCGA-IB-AAUR          TCGA-IB-AAUS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-IB-AAUU          TCGA-IB-AAUV          TCGA-IB-AAUW 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-LB-A7SX          TCGA-LB-A8F3          TCGA-LB-A9Q5 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-OE-A75W          TCGA-Q3-A5QY          TCGA-Q3-AA2A 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-RB-A7B8          TCGA-RB-AA9M          TCGA-RL-AAAS 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-S4-A8RO          TCGA-US-A776          TCGA-US-A779 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-US-A77E          TCGA-US-A77G          TCGA-US-A77J 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XD-AAUG          TCGA-XD-AAUH          TCGA-XD-AAUI 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-XD-AAUL          TCGA-XN-A8T3          TCGA-XN-A8T5 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-YB-A89D          TCGA-YH-A8SY          TCGA-YY-A8LH 
"HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" "HIST1H2BE WILD-TYPE" 
         TCGA-Z5-AAPL 
"HIST1H2BE WILD-TYPE" 

Clustering(640) Variable = NGF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGF MUTATED        1      0      1      2
  NGF WILD-TYPE     18     53     29     22
D640V1, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            53
  CLUS_3           1            29
  CLUS_4           2            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGF MUTATED        1      0      2      1
  NGF WILD-TYPE     34     30     32     25
D640V2, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            34
  CLUS_2           0            30
  CLUS_3           2            32
  CLUS_4           1            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NGF MUTATED        1      2      0      1      0
  NGF WILD-TYPE     28     16     13      8     13
D640V3, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            28
  CLUS_2           2            16
  CLUS_3           0            13
  CLUS_4           1             8
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NGF MUTATED        2      2      0      0      0
  NGF WILD-TYPE     30     16     12     10     10
D640V4, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           2            30
  CLUS_2           2            16
  CLUS_3           0            12
  CLUS_4           0            10
  CLUS_5           0            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NGF MUTATED        0      1      1      1      1
  NGF WILD-TYPE     26     19     27     24     19
D640V5, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           0            26
  CLUS_2           1            19
  CLUS_3           1            27
  CLUS_4           1            24
  CLUS_5           1            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        1      3      0
  NGF WILD-TYPE     47     50     18
D640V6, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           1            47
  CLUS_2           3            50
  CLUS_3           0            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NGF MUTATED        2      1      0      1      0
  NGF WILD-TYPE     35     30     17     20     13
D640V7, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           2            35
  CLUS_2           1            30
  CLUS_3           0            17
  CLUS_4           1            20
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NGF MUTATED        4      0      0
  NGF WILD-TYPE     67     27     21
D640V8, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           4            67
  CLUS_2           0            27
  CLUS_3           0            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NGF MUTATED        0      0      1      1      1      1      0
  NGF WILD-TYPE     18      8      9      7     35     24     12
D640V9, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           1             7
  CLUS_5           1            35
  CLUS_6           1            24
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NGF MUTATED        0      2      1      1      0      0
  NGF WILD-TYPE     17     30     12     31     16      7
D640V10, multiclass
        clus
vv       NGF MUTATED NGF WILD-TYPE
  CLUS_1           0            17
  CLUS_2           2            30
  CLUS_3           1            12
  CLUS_4           1            31
  CLUS_5           0            16
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(641) Variable = EHMT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHMT2 MUTATED        0      1      1      1
  EHMT2 WILD-TYPE     19     52     29     23
D641V1, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHMT2 MUTATED        2      1      0      0
  EHMT2 WILD-TYPE     33     29     34     26
D641V2, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              29
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        0      0      0      1      0
  EHMT2 WILD-TYPE     29     18     13      8     13
D641V3, multiclass
[1] "Remove cluster labels:" "EHMT2 MUTATED"         
clus
  EHMT2 MUTATED EHMT2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"EHMT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        1      0      0      0      0
  EHMT2 WILD-TYPE     31     18     12     10     10
D641V4, multiclass
[1] "Remove cluster labels:" "EHMT2 MUTATED"         
clus
  EHMT2 MUTATED EHMT2 WILD-TYPE 
              1              81 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-3A-A9IH      TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-3E-AAAZ      TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FB-AAQ1      TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FZ-5921      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-FZ-5926      TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-A6UF      TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-AAUN      TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-IB-AAUU      TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-LB-A8F3      TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-Q3-AA2A      TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-US-A776      TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-US-A77J      TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-XN-A8T5      TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH 
"EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" "EHMT2 WILD-TYPE" 
     TCGA-Z5-AAPL 
"EHMT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        0      0      0      3      0
  EHMT2 WILD-TYPE     26     20     28     22     20
D641V5, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHMT2 MUTATED        3      0      0
  EHMT2 WILD-TYPE     45     53     18
D641V6, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             0              53
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        0      0      2      1      0
  EHMT2 WILD-TYPE     37     31     15     20     13
D641V7, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             0              31
  CLUS_3             2              15
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHMT2 MUTATED        1      2      0
  EHMT2 WILD-TYPE     70     25     21
D641V8, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              25
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EHMT2 MUTATED        1      0      1      0      1      0      0
  EHMT2 WILD-TYPE     17      8      9      8     35     25     12
D641V9, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EHMT2 MUTATED        0      0      0      3      0      0
  EHMT2 WILD-TYPE     17     32     13     29     16      7
D641V10, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(642) Variable = PLEKHG2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHG2 MUTATED        1      1      2      1
  PLEKHG2 WILD-TYPE     18     52     28     23
D642V1, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               1                18
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHG2 MUTATED        3      1      0      1
  PLEKHG2 WILD-TYPE     32     29     34     25
D642V2, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               1                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHG2 MUTATED        1      1      1      1      0
  PLEKHG2 WILD-TYPE     28     17     12      8     13
D642V3, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               1                28
  CLUS_2               1                17
  CLUS_3               1                12
  CLUS_4               1                 8
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHG2 MUTATED        3      1      0      0      0
  PLEKHG2 WILD-TYPE     29     17     12     10     10
D642V4, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               3                29
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               0                10
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHG2 MUTATED        1      0      0      3      1
  PLEKHG2 WILD-TYPE     25     20     28     22     19
D642V5, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               3                22
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHG2 MUTATED        3      1      1
  PLEKHG2 WILD-TYPE     45     52     17
D642V6, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                52
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHG2 MUTATED        2      1      1      1      0
  PLEKHG2 WILD-TYPE     35     30     16     20     13
D642V7, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                30
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHG2 MUTATED        3      1      1
  PLEKHG2 WILD-TYPE     68     26     20
D642V8, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               1                26
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEKHG2 MUTATED        1      0      1      0      0      3      0
  PLEKHG2 WILD-TYPE     17      8      9      8     36     22     12
D642V9, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               3                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHG2 MUTATED        0      1      0      3      1      0
  PLEKHG2 WILD-TYPE     17     31     13     29     15      7
D642V10, multiclass
        clus
vv       PLEKHG2 MUTATED PLEKHG2 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               3                29
  CLUS_5               1                15
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(643) Variable = SRFBP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRFBP1 MUTATED        0      1      1      1
  SRFBP1 WILD-TYPE     19     52     29     23
D643V1, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              0               19
  CLUS_2              1               52
  CLUS_3              1               29
  CLUS_4              1               23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRFBP1 MUTATED        2      1      0      0
  SRFBP1 WILD-TYPE     33     29     34     26
D643V2, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRFBP1 MUTATED        1      0      0      1      0
  SRFBP1 WILD-TYPE     28     18     13      8     13
D643V3, multiclass
[1] "Remove cluster labels:" "SRFBP1 MUTATED"        
clus
  SRFBP1 MUTATED SRFBP1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRFBP1 MUTATED        2      0      0      0      0
  SRFBP1 WILD-TYPE     30     18     12     10     10
D643V4, multiclass
[1] "Remove cluster labels:" "SRFBP1 MUTATED"        
clus
  SRFBP1 MUTATED SRFBP1 WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABH       TCGA-2J-AABK       TCGA-2J-AABO 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-2J-AABR       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" "SRFBP1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRFBP1 MUTATED        1      1      0      1      0
  SRFBP1 WILD-TYPE     25     19     28     24     20
D643V5, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               19
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        1      1      1
  SRFBP1 WILD-TYPE     47     52     17
D643V6, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               47
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRFBP1 MUTATED        1      0      0      2      0
  SRFBP1 WILD-TYPE     36     31     17     19     13
D643V7, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRFBP1 MUTATED        2      0      1
  SRFBP1 WILD-TYPE     69     27     20
D643V8, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               27
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRFBP1 MUTATED        0      0      1      0      1      0      1
  SRFBP1 WILD-TYPE     18      8      9      8     35     25     11
D643V9, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRFBP1 MUTATED        0      1      0      1      0      1
  SRFBP1 WILD-TYPE     17     31     13     31     16      6
D643V10, multiclass
        clus
vv       SRFBP1 MUTATED SRFBP1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(644) Variable = TSC22D1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D1 MUTATED        2      0      1      0
  TSC22D1 WILD-TYPE     17     53     29     24
D644V1, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               2                17
  CLUS_2               0                53
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D1 MUTATED        2      1      0      0
  TSC22D1 WILD-TYPE     33     29     34     26
D644V2, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D1 MUTATED        1      0      0      1      0
  TSC22D1 WILD-TYPE     28     18     13      8     13
D644V3, multiclass
[1] "Remove cluster labels:" "TSC22D1 MUTATED"       
clus
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7652 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D1 MUTATED        2      0      0      0      0
  TSC22D1 WILD-TYPE     30     18     12     10     10
D644V4, multiclass
[1] "Remove cluster labels:" "TSC22D1 MUTATED"       
clus
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQJ        TCGA-2L-AAQL 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB        TCGA-3A-A9IH 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ        TCGA-3E-AAAZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM        TCGA-FB-A78T 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ        TCGA-FB-AAQ1 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920        TCGA-FZ-5921 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924        TCGA-FZ-5926 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925        TCGA-IB-7652 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO        TCGA-IB-A5SP 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX        TCGA-LB-A8F3 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY        TCGA-Q3-AA2A 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO        TCGA-US-A776 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D1 MUTATED        1      0      0      2      0
  TSC22D1 WILD-TYPE     25     20     28     23     20
D644V5, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSC22D1 MUTATED        3      0      0
  TSC22D1 WILD-TYPE     45     53     18
D644V6, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               0                53
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D1 MUTATED        1      0      1      1      0
  TSC22D1 WILD-TYPE     36     31     16     20     13
D644V7, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSC22D1 MUTATED        2      1      0
  TSC22D1 WILD-TYPE     69     26     21
D644V8, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSC22D1 MUTATED        1      0      1      0      0      0      1
  TSC22D1 WILD-TYPE     17      8      9      8     36     25     11
D644V9, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               0                36
  CLUS_6               0                25
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSC22D1 MUTATED        1      0      0      2      0      0
  TSC22D1 WILD-TYPE     16     32     13     30     16      7
D644V10, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(645) Variable = EEF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2 MUTATED        0      3      1      0
  EEF2 WILD-TYPE     19     50     29     24
D645V1, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            3             50
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2 MUTATED        3      0      1      0
  EEF2 WILD-TYPE     32     30     33     26
D645V2, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            0             30
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2 MUTATED        1      1      0      1      0
  EEF2 WILD-TYPE     28     17     13      8     13
D645V3, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2 MUTATED        2      1      0      0      0
  EEF2 WILD-TYPE     30     17     12     10     10
D645V4, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            2             30
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2 MUTATED        1      1      1      1      0
  EEF2 WILD-TYPE     25     19     27     24     20
D645V5, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             19
  CLUS_3            1             27
  CLUS_4            1             24
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        4      0      0
  EEF2 WILD-TYPE     44     53     18
D645V6, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            4             44
  CLUS_2            0             53
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2 MUTATED        2      0      0      1      1
  EEF2 WILD-TYPE     35     31     17     20     12
D645V7, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             31
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEF2 MUTATED        2      1      1
  EEF2 WILD-TYPE     69     26     20
D645V8, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            1             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EEF2 MUTATED        1      0      1      0      1      1      0
  EEF2 WILD-TYPE     17      8      9      8     35     24     12
D645V9, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            1             24
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EEF2 MUTATED        0      1      0      2      1      0
  EEF2 WILD-TYPE     17     31     13     30     15      7
D645V10, multiclass
        clus
vv       EEF2 MUTATED EEF2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            1             15
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(646) Variable = E2F7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        1      1      1      0
  E2F7 WILD-TYPE     18     52     29     24
D646V1, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             18
  CLUS_2            1             52
  CLUS_3            1             29
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        2      1      0      0
  E2F7 WILD-TYPE     33     29     34     26
D646V2, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             29
  CLUS_3            0             34
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        0      1      0      2      0
  E2F7 WILD-TYPE     29     17     13      7     13
D646V3, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            2              7
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        1      1      0      1      0
  E2F7 WILD-TYPE     31     17     12      9     10
D646V4, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            0             12
  CLUS_4            1              9
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        0      0      0      3      0
  E2F7 WILD-TYPE     26     20     28     22     20
D646V5, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            0             28
  CLUS_4            3             22
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED        3      0      0
  E2F7 WILD-TYPE     45     53     18
D646V6, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            3             45
  CLUS_2            0             53
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        1      0      1      1      0
  E2F7 WILD-TYPE     36     31     16     20     13
D646V7, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             31
  CLUS_3            1             16
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED        1      2      0
  E2F7 WILD-TYPE     70     25     21
D646V8, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             25
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  E2F7 MUTATED        1      0      1      0      1      0      0
  E2F7 WILD-TYPE     17      8      9      8     35     25     12
D646V9, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            1             35
  CLUS_6            0             25
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  E2F7 MUTATED        0      0      0      3      0      0
  E2F7 WILD-TYPE     17     32     13     29     16      7
D646V10, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             32
  CLUS_3            0             13
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(647) Variable = NR2C1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR2C1 MUTATED        0      1      1      1
  NR2C1 WILD-TYPE     19     52     29     23
D647V1, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             0              19
  CLUS_2             1              52
  CLUS_3             1              29
  CLUS_4             1              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR2C1 MUTATED        2      0      1      0
  NR2C1 WILD-TYPE     33     30     33     26
D647V2, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR2C1 MUTATED        1      1      0      1      0
  NR2C1 WILD-TYPE     28     17     13      8     13
D647V3, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR2C1 MUTATED        2      1      0      0      0
  NR2C1 WILD-TYPE     30     17     12     10     10
D647V4, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             2              30
  CLUS_2             1              17
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             0              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR2C1 MUTATED        1      0      1      1      0
  NR2C1 WILD-TYPE     25     20     27     24     20
D647V5, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              20
  CLUS_3             1              27
  CLUS_4             1              24
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR2C1 MUTATED        1      2      0
  NR2C1 WILD-TYPE     47     51     18
D647V6, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR2C1 MUTATED        2      0      0      1      0
  NR2C1 WILD-TYPE     35     31     17     20     13
D647V7, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              31
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR2C1 MUTATED        3      0      0
  NR2C1 WILD-TYPE     68     27     21
D647V8, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             0              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NR2C1 MUTATED        0      0      1      0      2      0      0
  NR2C1 WILD-TYPE     18      8      9      8     34     25     12
D647V9, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             2              34
  CLUS_6             0              25
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NR2C1 MUTATED        0      2      0      1      0      0
  NR2C1 WILD-TYPE     17     30     13     31     16      7
D647V10, multiclass
        clus
vv       NR2C1 MUTATED NR2C1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             0              16
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(648) Variable = ASPM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED        3      2      2      2
  ASPM WILD-TYPE     16     51     28     22
D648V1, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            3             16
  CLUS_2            2             51
  CLUS_3            2             28
  CLUS_4            2             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED        5      1      2      1
  ASPM WILD-TYPE     30     29     32     25
D648V2, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            5             30
  CLUS_2            1             29
  CLUS_3            2             32
  CLUS_4            1             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPM MUTATED        0      0      0      1      1
  ASPM WILD-TYPE     29     18     13      8     12
D648V3, multiclass
[1] "Remove cluster labels:" "ASPM MUTATED"          
clus
  ASPM MUTATED ASPM WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPM MUTATED        1      1      0      0      0
  ASPM WILD-TYPE     31     17     12     10     10
D648V4, multiclass
[1] "Remove cluster labels:" "ASPM MUTATED"          
clus
  ASPM MUTATED ASPM WILD-TYPE 
             2             80 
    TCGA-2J-AAB4     TCGA-2J-AAB8     TCGA-2J-AAB9     TCGA-2J-AABA 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-2J-AABF     TCGA-2J-AABH     TCGA-2J-AABK     TCGA-2J-AABO 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-2J-AABR     TCGA-2L-AAQA     TCGA-2L-AAQI     TCGA-2L-AAQJ 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-2L-AAQL     TCGA-2L-AAQM     TCGA-3A-A9I5     TCGA-3A-A9IB 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-3A-A9IH     TCGA-3A-A9IU     TCGA-3A-A9IX     TCGA-3A-A9IZ 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-3E-AAAZ     TCGA-F2-A44G     TCGA-F2-A8YN     TCGA-FB-A5VM 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-AAPP     TCGA-FB-AAPQ     TCGA-FB-AAPZ 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-FB-AAQ1     TCGA-FZ-5919     TCGA-FZ-5920     TCGA-FZ-5921 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-FZ-5924     TCGA-FZ-5926 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-HZ-7918     TCGA-HZ-7925     TCGA-IB-7652 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-8126     TCGA-IB-A5SO     TCGA-IB-A5SP 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UF 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-A7LX     TCGA-IB-A7M4     TCGA-IB-AAUM     TCGA-IB-AAUN 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-AAUO     TCGA-IB-AAUP     TCGA-IB-AAUS     TCGA-IB-AAUU 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-IB-AAUV     TCGA-IB-AAUW     TCGA-LB-A7SX     TCGA-LB-A8F3 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-LB-A9Q5     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-Q3-AA2A 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-RB-A7B8     TCGA-RB-AA9M     TCGA-S4-A8RO     TCGA-US-A776 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77G     TCGA-US-A77J 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-XD-AAUH     TCGA-XD-AAUI     TCGA-XD-AAUL     TCGA-XN-A8T5 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
    TCGA-YB-A89D     TCGA-YH-A8SY     TCGA-YY-A8LH     TCGA-Z5-AAPL 
"ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" "ASPM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPM MUTATED        2      0      2      3      2
  ASPM WILD-TYPE     24     20     26     22     18
D648V5, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             20
  CLUS_3            2             26
  CLUS_4            3             22
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPM MUTATED        3      6      0
  ASPM WILD-TYPE     45     47     18
D648V6, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            3             45
  CLUS_2            6             47
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPM MUTATED        2      2      1      4      0
  ASPM WILD-TYPE     35     29     16     17     13
D648V7, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            2             35
  CLUS_2            2             29
  CLUS_3            1             16
  CLUS_4            4             17
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPM MUTATED        8      1      0
  ASPM WILD-TYPE     63     26     21
D648V8, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            8             63
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASPM MUTATED        0      0      1      1      4      2      0
  ASPM WILD-TYPE     18      8      9      7     32     23     12
D648V9, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            1              7
  CLUS_5            4             32
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASPM MUTATED        1      1      3      3      0      0
  ASPM WILD-TYPE     16     31     10     29     16      7
D648V10, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1             31
  CLUS_3            3             10
  CLUS_4            3             29
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(649) Variable = CCDC108 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC108 MUTATED        0      1      1      1
  CCDC108 WILD-TYPE     19     52     29     23
D649V1, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               1                29
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC108 MUTATED        2      0      1      0
  CCDC108 WILD-TYPE     33     30     33     26
D649V2, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                30
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        1      0      0      1      0
  CCDC108 WILD-TYPE     28     18     13      8     13
D649V3, multiclass
[1] "Remove cluster labels:" "CCDC108 MUTATED"       
clus
  CCDC108 MUTATED CCDC108 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        2      0      0      0      0
  CCDC108 WILD-TYPE     30     18     12     10     10
D649V4, multiclass
[1] "Remove cluster labels:" "CCDC108 MUTATED"       
clus
  CCDC108 MUTATED CCDC108 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" "CCDC108 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        1      0      0      2      0
  CCDC108 WILD-TYPE     25     20     28     23     20
D649V5, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                20
  CLUS_3               0                28
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC108 MUTATED        3      0      0
  CCDC108 WILD-TYPE     45     53     18
D649V6, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               3                45
  CLUS_2               0                53
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        1      0      1      1      0
  CCDC108 WILD-TYPE     36     31     16     20     13
D649V7, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC108 MUTATED        2      1      0
  CCDC108 WILD-TYPE     69     26     21
D649V8, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               1                26
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC108 MUTATED        1      0      1      0      1      0      0
  CCDC108 WILD-TYPE     17      8      9      8     35     25     12
D649V9, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC108 MUTATED        1      0      0      2      0      0
  CCDC108 WILD-TYPE     16     32     13     30     16      7
D649V10, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               0                32
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(650) Variable = PDGFRB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRB MUTATED        0      3      1      0
  PDGFRB WILD-TYPE     19     50     29     24
D650V1, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRB MUTATED        3      0      1      0
  PDGFRB WILD-TYPE     32     30     33     26
D650V2, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               30
  CLUS_3              1               33
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDGFRB MUTATED        1      0      0      1      1
  PDGFRB WILD-TYPE     28     18     13      8     12
D650V3, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              1               28
  CLUS_2              0               18
  CLUS_3              0               13
  CLUS_4              1                8
  CLUS_5              1               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDGFRB MUTATED        2      1      0      0      0
  PDGFRB WILD-TYPE     30     17     12     10     10
D650V4, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              2               30
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              0               10
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDGFRB MUTATED        2      0      0      1      0
  PDGFRB WILD-TYPE     24     20     28     24     20
D650V5, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRB MUTATED        1      2      0
  PDGFRB WILD-TYPE     47     51     18
D650V6, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              1               47
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDGFRB MUTATED        2      0      0      1      0
  PDGFRB WILD-TYPE     35     31     17     20     13
D650V7, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               31
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRB MUTATED        3      0      0
  PDGFRB WILD-TYPE     68     27     21
D650V8, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              3               68
  CLUS_2              0               27
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDGFRB MUTATED        0      0      1      0      2      0      0
  PDGFRB WILD-TYPE     18      8      9      8     34     25     12
D650V9, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              0                8
  CLUS_5              2               34
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDGFRB MUTATED        2      0      0      1      0      0
  PDGFRB WILD-TYPE     15     32     13     31     16      7
D650V10, multiclass
        clus
vv       PDGFRB MUTATED PDGFRB WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0               32
  CLUS_3              0               13
  CLUS_4              1               31
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(651) Variable = TWISTNB MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        0      2      1      0
  TWISTNB WILD-TYPE     19     51     29     24
D651V1, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               0                19
  CLUS_2               2                51
  CLUS_3               1                29
  CLUS_4               0                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        3      0      0      0
  TWISTNB WILD-TYPE     32     30     34     26
D651V2, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                30
  CLUS_3               0                34
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TWISTNB MUTATED        0      1      0      2      0
  TWISTNB WILD-TYPE     29     17     13      7     13
D651V3, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               0                29
  CLUS_2               1                17
  CLUS_3               0                13
  CLUS_4               2                 7
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TWISTNB MUTATED        1      1      0      1      0
  TWISTNB WILD-TYPE     31     17     12      9     10
D651V4, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               1                31
  CLUS_2               1                17
  CLUS_3               0                12
  CLUS_4               1                 9
  CLUS_5               0                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TWISTNB MUTATED        0      0      1      2      0
  TWISTNB WILD-TYPE     26     20     27     23     20
D651V5, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                20
  CLUS_3               1                27
  CLUS_4               2                23
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TWISTNB MUTATED        3      0      0
  TWISTNB WILD-TYPE     45     53     18
D651V6, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               3                45
  CLUS_2               0                53
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TWISTNB MUTATED        1      0      1      1      0
  TWISTNB WILD-TYPE     36     31     16     20     13
D651V7, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                31
  CLUS_3               1                16
  CLUS_4               1                20
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TWISTNB MUTATED        3      0      0
  TWISTNB WILD-TYPE     68     27     21
D651V8, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               0                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TWISTNB MUTATED        0      0      1      0      2      0      0
  TWISTNB WILD-TYPE     18      8      9      8     34     25     12
D651V9, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               2                34
  CLUS_6               0                25
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TWISTNB MUTATED        0      1      0      2      0      0
  TWISTNB WILD-TYPE     17     31     13     30     16      7
D651V10, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               2                30
  CLUS_5               0                16
  CLUS_6               0                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(652) Variable = GRIN3B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN3B MUTATED        0      3      1      0
  GRIN3B WILD-TYPE     19     50     29     24
D652V1, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              0               19
  CLUS_2              3               50
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN3B MUTATED        2      1      0      1
  GRIN3B WILD-TYPE     33     29     34     25
D652V2, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               29
  CLUS_3              0               34
  CLUS_4              1               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRIN3B MUTATED        0      0      1      1      0
  GRIN3B WILD-TYPE     29     18     12      8     13
D652V3, multiclass
[1] "Remove cluster labels:" "GRIN3B MUTATED"        
clus
  GRIN3B MUTATED GRIN3B WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABR 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRIN3B MUTATED        1      0      1      0      0
  GRIN3B WILD-TYPE     31     18     11     10     10
D652V4, multiclass
[1] "Remove cluster labels:" "GRIN3B MUTATED"        
clus
  GRIN3B MUTATED GRIN3B WILD-TYPE 
               2               80 
      TCGA-2J-AAB4       TCGA-2J-AAB8       TCGA-2J-AAB9       TCGA-2J-AABA 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-2J-AABF       TCGA-2J-AABK       TCGA-2J-AABO       TCGA-2J-AABR 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-2L-AAQA       TCGA-2L-AAQI       TCGA-2L-AAQJ       TCGA-2L-AAQL 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-2L-AAQM       TCGA-3A-A9I5       TCGA-3A-A9IB       TCGA-3A-A9IH 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-3A-A9IU       TCGA-3A-A9IX       TCGA-3A-A9IZ       TCGA-3E-AAAZ 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A8YN       TCGA-FB-A5VM       TCGA-FB-A78T 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-FB-AAPP       TCGA-FB-AAPQ       TCGA-FB-AAPZ       TCGA-FB-AAQ1 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-FB-AAQ6       TCGA-FZ-5919       TCGA-FZ-5920       TCGA-FZ-5921 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-FZ-5922       TCGA-FZ-5923       TCGA-FZ-5924       TCGA-FZ-5926 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7918       TCGA-HZ-7925       TCGA-IB-7652 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-8126       TCGA-IB-A5SO       TCGA-IB-A5SP 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UF 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-A7LX       TCGA-IB-A7M4       TCGA-IB-AAUM       TCGA-IB-AAUN 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-AAUO       TCGA-IB-AAUP       TCGA-IB-AAUS       TCGA-IB-AAUU 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-IB-AAUV       TCGA-IB-AAUW       TCGA-LB-A7SX       TCGA-LB-A8F3 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-LB-A9Q5       TCGA-OE-A75W       TCGA-Q3-A5QY       TCGA-Q3-AA2A 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-RB-A7B8       TCGA-RB-AA9M       TCGA-S4-A8RO       TCGA-US-A776 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77G       TCGA-US-A77J 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-XD-AAUH       TCGA-XD-AAUI       TCGA-XD-AAUL       TCGA-XN-A8T5 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
      TCGA-YB-A89D       TCGA-YH-A8SY       TCGA-YY-A8LH       TCGA-Z5-AAPL 
"GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" "GRIN3B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRIN3B MUTATED        0      2      0      1      1
  GRIN3B WILD-TYPE     26     18     28     24     19
D652V5, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               18
  CLUS_3              0               28
  CLUS_4              1               24
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GRIN3B MUTATED        2      1      1
  GRIN3B WILD-TYPE     46     52     17
D652V6, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              2               46
  CLUS_2              1               52
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRIN3B MUTATED        0      1      1      2      0
  GRIN3B WILD-TYPE     37     30     16     19     13
D652V7, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               30
  CLUS_3              1               16
  CLUS_4              2               19
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GRIN3B MUTATED        2      1      1
  GRIN3B WILD-TYPE     69     26     20
D652V8, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               26
  CLUS_3              1               20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRIN3B MUTATED        1      0      2      0      1      0      0
  GRIN3B WILD-TYPE     17      8      8      8     35     25     12
D652V9, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              0                8
  CLUS_5              1               35
  CLUS_6              0               25
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GRIN3B MUTATED        0      0      1      2      0      1
  GRIN3B WILD-TYPE     17     32     12     30     16      6
D652V10, multiclass
        clus
vv       GRIN3B MUTATED GRIN3B WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0               32
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              1                6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(653) Variable = ENTPD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD2 MUTATED        1      2      1      0
  ENTPD2 WILD-TYPE     18     51     29     24
D653V1, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              1               18
  CLUS_2              2               51
  CLUS_3              1               29
  CLUS_4              0               24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD2 MUTATED        4      0      0      0
  ENTPD2 WILD-TYPE     31     30     34     26
D653V2, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              0               30
  CLUS_3              0               34
  CLUS_4              0               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        0      1      0      2      0
  ENTPD2 WILD-TYPE     29     17     13      7     13
D653V3, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              1               17
  CLUS_3              0               13
  CLUS_4              2                7
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        1      1      0      1      0
  ENTPD2 WILD-TYPE     31     17     12      9     10
D653V4, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              1               31
  CLUS_2              1               17
  CLUS_3              0               12
  CLUS_4              1                9
  CLUS_5              0               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        1      0      0      2      1
  ENTPD2 WILD-TYPE     25     20     28     23     19
D653V5, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               20
  CLUS_3              0               28
  CLUS_4              2               23
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD2 MUTATED        2      2      0
  ENTPD2 WILD-TYPE     46     51     18
D653V6, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              2               46
  CLUS_2              2               51
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        2      1      0      1      0
  ENTPD2 WILD-TYPE     35     30     17     20     13
D653V7, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               30
  CLUS_3              0               17
  CLUS_4              1               20
  CLUS_5              0               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD2 MUTATED        3      1      0
  ENTPD2 WILD-TYPE     68     26     21
D653V8, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              1               26
  CLUS_3              0               21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENTPD2 MUTATED        0      0      1      1      1      1      0
  ENTPD2 WILD-TYPE     18      8      9      7     35     24     12
D653V9, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1                7
  CLUS_5              1               35
  CLUS_6              1               24
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENTPD2 MUTATED        0      1      1      2      0      0
  ENTPD2 WILD-TYPE     17     31     12     30     16      7
D653V10, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1               31
  CLUS_3              1               12
  CLUS_4              2               30
  CLUS_5              0               16
  CLUS_6              0                7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(654) Variable = STK11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK11 MUTATED        1      2      1      0
  STK11 WILD-TYPE     18     51     29     24
D654V1, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             1              18
  CLUS_2             2              51
  CLUS_3             1              29
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK11 MUTATED        4      0      0      0
  STK11 WILD-TYPE     31     30     34     26
D654V2, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             0              30
  CLUS_3             0              34
  CLUS_4             0              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK11 MUTATED        1      0      0      1      0
  STK11 WILD-TYPE     28     18     13      8     13
D654V3, multiclass
[1] "Remove cluster labels:" "STK11 MUTATED"         
clus
  STK11 MUTATED STK11 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK11 MUTATED        2      0      0      0      0
  STK11 WILD-TYPE     30     18     12     10     10
D654V4, multiclass
[1] "Remove cluster labels:" "STK11 MUTATED"         
clus
  STK11 MUTATED STK11 WILD-TYPE 
              2              80 
     TCGA-2J-AAB4      TCGA-2J-AAB8      TCGA-2J-AAB9      TCGA-2J-AABA 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-2J-AABF      TCGA-2J-AABH      TCGA-2J-AABK      TCGA-2J-AABO 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-2J-AABR      TCGA-2L-AAQA      TCGA-2L-AAQI      TCGA-2L-AAQJ 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-2L-AAQL      TCGA-2L-AAQM      TCGA-3A-A9I5      TCGA-3A-A9IB 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-3A-A9IU      TCGA-3A-A9IX      TCGA-3A-A9IZ      TCGA-3E-AAAZ 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A8YN      TCGA-FB-A5VM      TCGA-FB-A78T 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-FB-AAPP      TCGA-FB-AAPQ      TCGA-FB-AAPZ      TCGA-FB-AAQ1 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-FB-AAQ6      TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7918      TCGA-HZ-7925      TCGA-IB-7652 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UF 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-A7LX      TCGA-IB-A7M4      TCGA-IB-AAUM      TCGA-IB-AAUN 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-AAUO      TCGA-IB-AAUP      TCGA-IB-AAUS      TCGA-IB-AAUU 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-IB-AAUV      TCGA-IB-AAUW      TCGA-LB-A7SX      TCGA-LB-A8F3 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-LB-A9Q5      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-Q3-AA2A 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-RB-A7B8      TCGA-RB-AA9M      TCGA-S4-A8RO      TCGA-US-A776 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77G      TCGA-US-A77J 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-XD-AAUH      TCGA-XD-AAUI      TCGA-XD-AAUL      TCGA-XN-A8T5 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-YB-A89D      TCGA-YH-A8SY      TCGA-YY-A8LH      TCGA-Z5-AAPL 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK11 MUTATED        0      1      0      3      0
  STK11 WILD-TYPE     26     19     28     22     20
D654V5, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              19
  CLUS_3             0              28
  CLUS_4             3              22
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK11 MUTATED        3      1      0
  STK11 WILD-TYPE     45     52     18
D654V6, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             3              45
  CLUS_2             1              52
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK11 MUTATED        1      0      1      1      1
  STK11 WILD-TYPE     36     31     16     20     12
D654V7, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              31
  CLUS_3             1              16
  CLUS_4             1              20
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK11 MUTATED        2      1      1
  STK11 WILD-TYPE     69     26     20
D654V8, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              26
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK11 MUTATED        1      0      1      0      0      2      0
  STK11 WILD-TYPE     17      8      9      8     36     23     12
D654V9, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             0              36
  CLUS_6             2              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK11 MUTATED        0      0      0      3      1      0
  STK11 WILD-TYPE     17     32     13     29     15      7
D654V10, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             0              32
  CLUS_3             0              13
  CLUS_4             3              29
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(655) Variable = LBR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBR MUTATED        0      3      1      0
  LBR WILD-TYPE     19     50     29     24
D655V1, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           0            19
  CLUS_2           3            50
  CLUS_3           1            29
  CLUS_4           0            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBR MUTATED        3      0      1      0
  LBR WILD-TYPE     32     30     33     26
D655V2, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           3            32
  CLUS_2           0            30
  CLUS_3           1            33
  CLUS_4           0            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LBR MUTATED        0      1      0      2      1
  LBR WILD-TYPE     29     17     13      7     12
D655V3, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           0            29
  CLUS_2           1            17
  CLUS_3           0            13
  CLUS_4           2             7
  CLUS_5           1            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LBR MUTATED        1      1      0      1      1
  LBR WILD-TYPE     31     17     12      9      9
D655V4, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           1            31
  CLUS_2           1            17
  CLUS_3           0            12
  CLUS_4           1             9
  CLUS_5           1             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LBR MUTATED        0      1      1      2      0
  LBR WILD-TYPE     26     19     27     23     20
D655V5, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           0            26
  CLUS_2           1            19
  CLUS_3           1            27
  CLUS_4           2            23
  CLUS_5           0            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LBR MUTATED        4      0      0
  LBR WILD-TYPE     44     53     18
D655V6, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           4            44
  CLUS_2           0            53
  CLUS_3           0            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LBR MUTATED        1      0      1      2      0
  LBR WILD-TYPE     36     31     16     19     13
D655V7, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           1            36
  CLUS_2           0            31
  CLUS_3           1            16
  CLUS_4           2            19
  CLUS_5           0            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LBR MUTATED        4      0      0
  LBR WILD-TYPE     67     27     21
D655V8, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           4            67
  CLUS_2           0            27
  CLUS_3           0            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LBR MUTATED        1      0      1      0      2      0      0
  LBR WILD-TYPE     17      8      9      8     34     25     12
D655V9, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           1            17
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           0             8
  CLUS_5           2            34
  CLUS_6           0            25
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LBR MUTATED        0      1      0      3      0      0
  LBR WILD-TYPE     17     31     13     29     16      7
D655V10, multiclass
        clus
vv       LBR MUTATED LBR WILD-TYPE
  CLUS_1           0            17
  CLUS_2           1            31
  CLUS_3           0            13
  CLUS_4           3            29
  CLUS_5           0            16
  CLUS_6           0             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(656) Variable = AKD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKD1 MUTATED        0      1      2      0
  AKD1 WILD-TYPE     19     52     28     24
D656V1, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            0             19
  CLUS_2            1             52
  CLUS_3            2             28
  CLUS_4            0             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKD1 MUTATED        1      1      1      0
  AKD1 WILD-TYPE     34     29     33     26
D656V2, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            1             29
  CLUS_3            1             33
  CLUS_4            0             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        0      1      0      1      1
  AKD1 WILD-TYPE     29     17     13      8     12
D656V3, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            1             17
  CLUS_3            0             13
  CLUS_4            1              8
  CLUS_5            1             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        1      1      1      0      0
  AKD1 WILD-TYPE     31     17     11     10     10
D656V4, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            1             31
  CLUS_2            1             17
  CLUS_3            1             11
  CLUS_4            0             10
  CLUS_5            0             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        0      0      1      2      0
  AKD1 WILD-TYPE     26     20     27     23     20
D656V5, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             20
  CLUS_3            1             27
  CLUS_4            2             23
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKD1 MUTATED        2      1      0
  AKD1 WILD-TYPE     46     52     18
D656V6, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            2             46
  CLUS_2            1             52
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        0      2      0      1      0
  AKD1 WILD-TYPE     37     29     17     20     13
D656V7, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             29
  CLUS_3            0             17
  CLUS_4            1             20
  CLUS_5            0             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKD1 MUTATED        2      1      0
  AKD1 WILD-TYPE     69     26     21
D656V8, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            1             26
  CLUS_3            0             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKD1 MUTATED        0      0      1      0      0      2      0
  AKD1 WILD-TYPE     18      8      9      8     36     23     12
D656V9, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            0              8
  CLUS_5            0             36
  CLUS_6            2             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKD1 MUTATED        0      1      0      2      0      0
  AKD1 WILD-TYPE     17     31     13     30     16      7
D656V10, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             31
  CLUS_3            0             13
  CLUS_4            2             30
  CLUS_5            0             16
  CLUS_6            0              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(657) Variable = GABRD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRD MUTATED        1      0      3      0
  GABRD WILD-TYPE     18     53     27     24
D657V1, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             1              18
  CLUS_2             0              53
  CLUS_3             3              27
  CLUS_4             0              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRD MUTATED        2      0      1      1
  GABRD WILD-TYPE     33     30     33     25
D657V2, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              30
  CLUS_3             1              33
  CLUS_4             1              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRD MUTATED        0      1      0      1      1
  GABRD WILD-TYPE     29     17     13      8     12
D657V3, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             0              29
  CLUS_2             1              17
  CLUS_3             0              13
  CLUS_4             1               8
  CLUS_5             1              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRD MUTATED        2      0      0      0      1
  GABRD WILD-TYPE     30     18     12     10      9
D657V4, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             2              30
  CLUS_2             0              18
  CLUS_3             0              12
  CLUS_4             0              10
  CLUS_5             1               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRD MUTATED        2      0      0      1      1
  GABRD WILD-TYPE     24     20     28     24     19
D657V5, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              20
  CLUS_3             0              28
  CLUS_4             1              24
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRD MUTATED        1      2      1
  GABRD WILD-TYPE     47     51     17
D657V6, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             1              47
  CLUS_2             2              51
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRD MUTATED        2      1      0      1      0
  GABRD WILD-TYPE     35     30     17     20     13
D657V7, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              30
  CLUS_3             0              17
  CLUS_4             1              20
  CLUS_5             0              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRD MUTATED        3      0      1
  GABRD WILD-TYPE     68     27     20
D657V8, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             3              68
  CLUS_2             0              27
  CLUS_3             1              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GABRD MUTATED        0      1      1      0      1      1      0
  GABRD WILD-TYPE     18      7      9      8     35     24     12
D657V9, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             0               8
  CLUS_5             1              35
  CLUS_6             1              24
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GABRD MUTATED        0      2      0      1      1      0
  GABRD WILD-TYPE     17     30     13     31     15      7
D657V10, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              30
  CLUS_3             0              13
  CLUS_4             1              31
  CLUS_5             1              15
  CLUS_6             0               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(658) Variable = CEACAM5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM5 MUTATED        0      1      2      1
  CEACAM5 WILD-TYPE     19     52     28     23
D658V1, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                52
  CLUS_3               2                28
  CLUS_4               1                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM5 MUTATED        2      1      1      0
  CEACAM5 WILD-TYPE     33     29     33     26
D658V2, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                29
  CLUS_3               1                33
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM5 MUTATED        1      0      0      1      0
  CEACAM5 WILD-TYPE     28     18     13      8     13
D658V3, multiclass
[1] "Remove cluster labels:" "CEACAM5 MUTATED"       
clus
  CEACAM5 MUTATED CEACAM5 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM5 MUTATED        2      0      0      0      0
  CEACAM5 WILD-TYPE     30     18     12     10     10
D658V4, multiclass
[1] "Remove cluster labels:" "CEACAM5 MUTATED"       
clus
  CEACAM5 MUTATED CEACAM5 WILD-TYPE 
                2                80 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IU        TCGA-3A-A9IX        TCGA-3A-A9IZ 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-3E-AAAZ        TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A5VM 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ        TCGA-FB-AAPZ 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919        TCGA-FZ-5920 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-FZ-5924 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-FZ-5926        TCGA-H8-A6C1        TCGA-HZ-7918        TCGA-HZ-7925 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-8126        TCGA-IB-A5SO 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-LB-A7SX 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-OE-A75W        TCGA-Q3-A5QY 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RO 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-US-A776        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" "CEACAM5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM5 MUTATED        1      2      0      1      0
  CEACAM5 WILD-TYPE     25     18     28     24     20
D658V5, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                18
  CLUS_3               0                28
  CLUS_4               1                24
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM5 MUTATED        1      2      1
  CEACAM5 WILD-TYPE     47     51     17
D658V6, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               1                47
  CLUS_2               2                51
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM5 MUTATED        2      0      0      2      0
  CEACAM5 WILD-TYPE     35     31     17     19     13
D658V7, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                31
  CLUS_3               0                17
  CLUS_4               2                19
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM5 MUTATED        3      0      1
  CEACAM5 WILD-TYPE     68     27     20
D658V8, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               0                27
  CLUS_3               1                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEACAM5 MUTATED        0      0      1      0      1      1      1
  CEACAM5 WILD-TYPE     18      8      9      8     35     24     11
D658V9, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               0                 8
  CLUS_5               1                35
  CLUS_6               1                24
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEACAM5 MUTATED        1      1      0      1      0      1
  CEACAM5 WILD-TYPE     16     31     13     31     16      6
D658V10, multiclass
        clus
vv       CEACAM5 MUTATED CEACAM5 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                31
  CLUS_3               0                13
  CLUS_4               1                31
  CLUS_5               0                16
  CLUS_6               1                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
