Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-CH-5741-01A-11D-1572-02	TCGA-CH-5743-01A-21D-1572-02	TCGA-CH-5744-01A-11D-1572-02	TCGA-CH-5745-01A-11D-1572-02	TCGA-CH-5746-01A-11D-1572-02	TCGA-CH-5748-01A-11D-1572-02	TCGA-CH-5750-01A-11D-1572-02	TCGA-CH-5751-01A-11D-1572-02	TCGA-CH-5752-01A-11D-1572-02	TCGA-CH-5754-01A-11D-1572-02	TCGA-CH-5761-01A-11D-1572-02	TCGA-CH-5762-01A-11D-1572-02	TCGA-CH-5763-01A-11D-1572-02	TCGA-CH-5764-01A-21D-1572-02	TCGA-CH-5765-01A-11D-1572-02	TCGA-CH-5766-01A-11D-1572-02	TCGA-CH-5767-01A-11D-1784-02	TCGA-CH-5768-01A-11D-1572-02	TCGA-CH-5769-01A-11D-1572-02	TCGA-CH-5771-01A-21D-1572-02	TCGA-CH-5772-01A-11D-1572-02	TCGA-CH-5788-01A-11D-1572-02	TCGA-CH-5789-01A-11D-1572-02	TCGA-CH-5790-01A-11D-1572-02	TCGA-CH-5791-01A-11D-1572-02	TCGA-CH-5792-01A-11D-1572-02	TCGA-CH-5794-01A-11D-1572-02	TCGA-EJ-5494-01A-01D-1572-02	TCGA-EJ-5495-01A-01D-1572-02	TCGA-EJ-5496-01A-01D-1572-02	TCGA-EJ-5497-01A-02D-1572-02	TCGA-EJ-5498-01A-01D-1572-02	TCGA-EJ-5499-01A-01D-1572-02	TCGA-EJ-5501-01A-01D-1572-02	TCGA-EJ-5502-01A-01D-1572-02	TCGA-EJ-5503-01A-01D-1572-02	TCGA-EJ-5504-01A-01D-1572-02	TCGA-EJ-5505-01A-01D-1572-02	TCGA-EJ-5506-01A-01D-1572-02	TCGA-EJ-5507-01A-01D-1572-02	TCGA-EJ-5508-01A-02D-1572-02	TCGA-EJ-5509-01A-01D-1572-02	TCGA-EJ-5510-01A-01D-1572-02	TCGA-EJ-5511-01A-01D-1572-02	TCGA-EJ-5512-01A-01D-1572-02	TCGA-EJ-5514-01A-01D-1572-02	TCGA-EJ-5515-01A-01D-1572-02	TCGA-EJ-5516-01A-01D-1572-02	TCGA-EJ-5517-01A-01D-1572-02	TCGA-EJ-5518-01A-01D-1572-02	TCGA-EJ-5519-01A-01D-1572-02	TCGA-EJ-5521-01A-01D-1572-02	TCGA-EJ-5522-01A-01D-1572-02	TCGA-EJ-5524-01A-01D-1572-02	TCGA-EJ-5525-01A-01D-1572-02	TCGA-EJ-5526-01A-01D-1572-02	TCGA-EJ-5527-01A-01D-1572-02	TCGA-EJ-5530-01A-01D-1572-02	TCGA-EJ-5531-01A-01D-1572-02	TCGA-EJ-5532-01A-01D-1572-02	TCGA-EJ-5542-01A-01D-1572-02	TCGA-EJ-7125-01A-11D-1957-02	TCGA-EJ-7317-01A-31D-2111-02	TCGA-EJ-7327-01A-11D-2111-02	TCGA-EJ-7328-01A-31D-2111-02	TCGA-EJ-7331-01A-11D-2111-02	TCGA-EJ-7781-01A-11D-2111-02	TCGA-EJ-7782-01A-11D-2111-02	TCGA-EJ-7784-01A-11D-2111-02	TCGA-EJ-7785-01A-11D-2111-02	TCGA-G9-6329-01A-13D-1957-02	TCGA-G9-6332-01A-11D-1784-02	TCGA-G9-6333-01A-12D-1957-02	TCGA-G9-6336-01A-11D-1784-02	TCGA-G9-6338-01A-12D-1957-02	TCGA-G9-6342-01A-11D-1957-02	TCGA-G9-6343-01A-21D-1957-02	TCGA-G9-6348-01A-11D-1784-02	TCGA-G9-6351-01A-21D-1957-02	TCGA-G9-6353-01A-11D-1957-02	TCGA-G9-6356-01A-11D-1784-02	TCGA-G9-6361-01A-21D-1957-02	TCGA-G9-6362-01A-11D-1784-02	TCGA-G9-6363-01A-21D-1784-02	TCGA-G9-6364-01A-21D-1784-02	TCGA-G9-6365-01A-11D-1784-02	TCGA-G9-6367-01A-11D-1784-02	TCGA-G9-6370-01A-11D-1784-02	TCGA-G9-6371-01A-11D-1784-02	TCGA-G9-6373-01A-11D-1784-02	TCGA-G9-6377-01A-11D-1957-02	TCGA-G9-6378-01A-11D-1784-02	TCGA-G9-6384-01A-11D-1784-02	TCGA-G9-6385-01A-11D-1784-02	TCGA-G9-6494-01A-11D-1784-02	TCGA-G9-6496-01A-11D-1784-02	TCGA-G9-6499-01A-12D-1957-02	TCGA-HC-7075-01A-11D-1957-02	TCGA-HC-7077-01A-11D-1957-02	TCGA-HC-7079-01A-11D-1957-02	TCGA-HC-7080-01A-11D-1957-02	TCGA-HC-7081-01A-11D-1957-02	TCGA-HC-7209-01A-11D-2111-02	TCGA-HC-7210-01A-11D-2111-02	TCGA-HC-7211-01A-11D-2111-02	TCGA-HC-7212-01A-11D-2111-02	TCGA-HC-7213-01A-11D-2111-02	TCGA-HC-7230-01A-11D-2111-02	TCGA-HC-7231-01A-11D-2111-02	TCGA-HC-7232-01A-11D-2111-02	TCGA-HC-7233-01A-11D-2111-02	TCGA-HI-7168-01A-11D-2111-02	TCGA-HI-7169-01A-11D-2111-02	TCGA-HI-7170-01A-11D-2111-02	TCGA-HI-7171-01A-12D-2111-02	
Amplification Peak 1	5q31.1 	chr5:135102172-135142341(probes 4870:4879)	chr5:135115404-135120707(probes 4871:4872)	chr5:135099097-136655892(probes 4865:4885)	2.415e-05	 2.415e-05		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	
Amplification Peak 2	7p15.2 	chr7:23747603-33899458(probes 6090:6117)    	chr7:24816391-28592310(probes 6091:6108)    	chr7:24816391-34100315(probes 6091:6119)    	0.030961	  0.030961		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	
Amplification Peak 3	8p11.23	chr8:36722500-37773697(probes 6854:6873)    	chr8:37345096-37720323(probes 6865:6872)    	chr8:36723541-38266174(probes 6855:6875)    	0.089453	  0.089453		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	
Amplification Peak 4	10p11.1	chr10:38771600-38888819(probes 8122:8135)  	chr10:38783122-38869610(probes 8131:8134)  	chr10:38774668-43873574(probes 8123:8142)  	0.019934	  0.019934		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	1	2	0	0	0	0	0	0	1	2	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  1	1p31.3  	chr1:63261852-67387711(probes 238:297)        	chr1:65047679-65250134(probes 261:266)        	chr1:64866038-65437707(probes 259:271)        	0.13054	    0.13054		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	1	0	0	1	
Deletion Peak  2	2q22.1  	chr2:136747893-149637131(probes 2008:2101)  	chr2:140564991-141066350(probes 2029:2036)  	chr2:138193278-149637131(probes 2021:2101)  	0.0082785	  0.0082785		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	1	0	0	1	0	1	0	0	0	0	0	1	
Deletion Peak  3	3p13    	chr3:70330075-72954816(probes 2762:2801)      	chr3:71927854-72796246(probes 2783:2792)      	chr3:69941316-73875954(probes 2755:2815)      	0.0011489	  0.0011489		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  4	5q13.2  	chr5:54459221-76494345(probes 4256:4402)      	chr5:68323046-68482362(probes 4359:4360)      	chr5:66654357-73129977(probes 4339:4387)      	0.016779	   0.016779		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	
Deletion Peak  5	5q15    	chr5:96716255-100717422(probes 4573:4615)    	chr5:98133617-98202674(probes 4597:4600)      	chr5:96716255-101324279(probes 4573:4623)    	0.001795	   0.001795		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  6	6q14.3  	chr6:84879631-87907117(probes 5668:5688)      	chr6:87084405-87559292(probes 5681:5684)      	chr6:81401614-122830967(probes 5613:5865)    	1.7593e-07	 1.7593e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	0	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	1	0	1	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	
Deletion Peak  7	8p21.2  	chr8:9632689-27901352(probes 6620:6775)        	chr8:24506618-24542456(probes 6733:6734)      	chr8:17932292-26463698(probes 6671:6755)      	0.0093503	   0.021915		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	1	0	0	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	0	1	0	1	1	1	0	0	1	1	0	0	1	1	0	0	0	0	0	1	0	0	0	1	1	1	0	0	0	1	0	1	0	1	1	1	1	1	0	1	0	0	0	0	1	0	1	0	0	0	0	1	1	0	1	1	0	0	0	0	0	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	0	0	1	0	0	1	0	0	1	1	1	0	1	0	0	1	0	1	1	
Deletion Peak  8	8p11.21 	chr8:37133741-42842524(probes 6862:6939)      	chr8:41859714-41992627(probes 6921:6924)      	chr8:41680577-42194068(probes 6917:6927)      	0.093166	    0.20838		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	1	1	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	1	0	1	1	
Deletion Peak  9	10q23.31	chr10:89605005-90036483(probes 8476:8505)    	chr10:89790834-89812219(probes 8491:8494)    	chr10:85653575-95707725(probes 8393:8603)    	9.8455e-30	 9.8455e-30		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	1	0	1	0	0	1	1	1	1	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	1	2	0	1	1	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	1	1	1	0	1	2	1	2	1	0	0	0	0	0	
Deletion Peak 10	11q23.2 	chr11:113676693-114556953(probes 9238:9253)	chr11:113738307-114005946(probes 9243:9246)	chr11:113677761-114573312(probes 9239:9255)	0.0076716	  0.0076716		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	1	0	0	0	1	0	0	0	1	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	
Deletion Peak 11	12p13.1 	chr12:11587862-14028033(probes 9403:9440)    	chr12:12910234-13042075(probes 9428:9429)    	chr12:11760683-13444258(probes 9408:9434)    	0.048127	   0.048127		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	
Deletion Peak 12	12q24.31	chr12:122299660-133851895(probes 9907:9951)	chr12:125390963-126007117(probes 9928:9935)	chr12:125390963-126779403(probes 9928:9938)	0.24894	    0.24894		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	
Deletion Peak 13	13q14.11	chr13:37454639-57127872(probes 10103:10208)  	chr13:41133187-43835656(probes 10134:10144)  	chr13:37168615-77456592(probes 10090:10308)  	6.392e-05	  6.392e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	1	0	0	1	1	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	0	1	0	1	0	0	1	1	0	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	1	1	1	0	1	1	0	1	1	0	0	0	0	1	
Deletion Peak 14	16q24.1 	chr16:78508930-90354753(probes 11287:11339)  	chr16:83962560-90354753(probes 11328:11339)  	chr16:71407805-90354753(probes 11230:11339)  	5.3139e-06	 5.3139e-06		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	1	0	1	1	1	0	1	0	0	0	0	0	0	0	1	0	1	1	1	0	0	1	1	0	0	1	1	0	0	0	0	0	0	1	0	1	1	0	1	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	1	0	1	1	1	0	0	1	0	1	0	0	1	
Deletion Peak 15	17p13.1 	chr17:6726127-7961035(probes 11369:11398)      	chr17:7188892-7588604(probes 11380:11385)      	chr17:6932878-7961035(probes 11372:11398)      	0.029665	   0.029665		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	1	1	1	0	1	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	1	1	1	1	1	1	1	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	1	0	0	0	
Deletion Peak 16	17q21.31	chr17:41809000-42771669(probes 11620:11642)  	chr17:42536077-42582330(probes 11637:11638)  	chr17:41601511-45144586(probes 11605:11658)  	0.00015398	 0.00015398		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	
Deletion Peak 17	21q22.2 	chr21:39900175-42862782(probes 12601:12631)  	chr21:40098487-40485371(probes 12609:12612)  	chr21:39852239-42876022(probes 12569:12647)  	7.9884e-15	 7.9884e-15		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	0	1	1	1	0	0	1	1	0	0	1	0	0	0	0	0	1	1	0	1	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	1	1	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	1	1	0	0	1	0	0	
Amplification Peak 1 - CN values	5q31.1 	chr5:135102172-135142341(probes 4870:4879)	chr5:135115404-135120707(probes 4871:4872)	chr5:135099097-136655892(probes 4865:4885)	2.415e-05	 2.415e-05		Actual Copy Change Given	-0.0068536	0.00021656	-0.019422	-0.0075597	0.0036836	-0.013586	0.0021681	-0.10851	0.0026089	-0.032319	-0.68831	0.01016	-0.007063	-0.014901	0.0015235	-0.24512	0.00052395	-0.0017107	-0.00074887	0	-0.013729	0	0.0074186	0.0046805	0.0069007	0.012312	0	0.017525	1.4097	1.8773	0.065446	0.010385	0.11023	-0.37393	0.00974	0.068283	-0.014099	0.035149	0.0020825	-0.22416	2.3508	0.015782	0.099219	0	0.049495	0.98562	0.99634	0.17647	0	0.53219	-0.00073365	-0.12394	0.011962	0.013983	0.028476	0.055863	0.0029237	1.6922	0.19626	3.8716	0.017062	0.02262	0.0069158	-0.06395	0.0035463	0.012495	0.92702	0.017588	0	0.008399	0.0094784	-0.90065	0.0022464	0.0044016	-0.060761	0.004082	0.010354	0.0074923	0.0042873	0.0014182	0.064226	-0.1113	-0.001058	-0.005105	0.0015646	0.00019565	0.0023398	0.0032268	-0.00049768	0.01549	-0.04606	0.00066284	0.0052883	0.0012325	0.0081998	0.0075043	-0.028129	0.0050083	0.014967	0.0038072	0.01956	0.014212	0.0028736	0.0071431	0.00062869	0.005103	0.037805	0.011852	1.4157	0.01594	0.010769	-0.26542	0.0019565	0.0034932	0	
Amplification Peak 2 - CN values	7p15.2 	chr7:23747603-33899458(probes 6090:6117)    	chr7:24816391-28592310(probes 6091:6108)    	chr7:24816391-34100315(probes 6091:6119)    	0.030961	  0.030961		Actual Copy Change Given	0	0.0039029	0.0037056	0.0068562	0.0079995	0.024726	-0.0092103	0.27755	-0.012664	0.84774	-0.68092	0.37556	0.0055704	0.00057856	0.016786	0.0034539	-0.0060795	0.1855	0.0011994	0.11572	0.19531	1.8179	0	0.043931	0.19269	-0.011559	-0.014556	0.10007	2.18	-0.026356	-0.060596	-0.017675	-0.042833	0	-0.0097873	0.05399	0.077561	-0.011648	0.011479	0.035904	-0.0059468	0.48252	-0.018256	0.023801	-0.01982	-0.066324	0.014312	-0.22501	-0.0042146	0.0033555	-0.057211	0.12108	0.020376	0	-0.020753	-0.04856	-0.018227	-0.013985	0.23787	0.019806	0.31558	0.16529	0.014085	0.019683	0.017484	-0.035071	0.025325	0.00038286	1.1782	-0.0021167	-0.0080413	0.00050541	0.01884	0	0.17606	0.0016758	-0.012158	0.00041258	0.00044177	0.0029412	0.010235	0.031565	0.0069844	0.073055	-0.014529	0.071127	0.0036812	0.0041199	0.18296	0.013548	0.15211	0.0028967	0.0041485	0.00038067	0.049066	3.3412	0.85108	-0.0021222	-0.0029078	-0.011699	0.0045995	0	-0.004494	-0.0026941	0.0026417	0.0003445	3.5659	0	-0.0039422	0.013953	0	0.26705	-0.0066499	0.0050326	0.092507	
Amplification Peak 3 - CN values	8p11.23	chr8:36722500-37773697(probes 6854:6873)    	chr8:37345096-37720323(probes 6865:6872)    	chr8:36723541-38266174(probes 6855:6875)    	0.089453	  0.089453		Actual Copy Change Given	0.0012005	-0.0052464	-0.59763	0	-0.002942	-0.0087707	-0.74943	0.81524	-0.013611	-0.65912	-0.70308	0.03198	-0.017294	-0.55627	-0.74599	-0.7884	0.78272	0.032691	0.0015785	-0.2819	0.079435	5.9669	-0.0080563	-0.81567	0.0012357	-0.014218	-0.58234	0.0049172	0.009728	-0.27191	0.022858	-0.036918	-0.49354	-0.39647	-0.0087763	0.0049619	-0.18242	0.011117	0	-0.54129	-0.13378	0.097863	0.0049649	-0.81585	0.02308	0.20249	-0.087619	-0.062558	-0.71503	0.024119	-0.026579	-0.1718	-0.15379	0.0085273	-0.87511	-0.061526	-0.30618	-0.5329	-0.25187	-0.69286	-0.18404	0.28351	0.0090962	0.014125	0.060248	-0.012403	0.24998	0.00050502	0.28498	0	0.0068233	-0.8095	-0.47103	0.00096263	0.0027242	-0.48269	-0.20336	0.0097828	0	0.0022215	0.0020233	-0.99902	0.0026245	0.00014651	-0.57739	0	0.0028617	5.9988e-05	-0.27308	0.65745	-0.54198	0.0018093	0.035168	0.0017691	-0.56064	0.012903	0.23976	0.0052706	-0.3501	0	0.015073	0.0091846	0	0.46892	0.002098	-0.6788	0.34719	0.0061471	-0.31593	-0.0030653	-0.17045	0.32119	-0.00083541	-0.48915	-0.80235	
Amplification Peak 4 - CN values	10p11.1	chr10:38771600-38888819(probes 8122:8135)  	chr10:38783122-38869610(probes 8131:8134)  	chr10:38774668-43873574(probes 8123:8142)  	0.019934	  0.019934		Actual Copy Change Given	0.0040652	-0.0027162	-0.0020464	-0.0060396	-0.010278	-0.0018243	-0.015979	-0.16892	-0.031102	-0.040262	0.0023616	0.0028262	-0.0020187	-0.024408	0.0019137	-0.00055798	0.0047903	0.0014239	-0.0028094	-0.0030354	-0.0016364	0.81047	-0.018681	-0.19529	0.010868	0.044525	-0.027992	-0.0036991	-0.084519	-0.077268	-0.083764	0.021776	1.013	-0.04864	-0.058921	-0.06814	0.0078808	-0.065591	-0.0038667	0.55761	-0.095822	-0.027946	-0.023155	-0.017051	-0.049144	0.31975	1.2077	-0.067021	-0.0074823	-0.51582	0.075941	0	-0.019087	0.38511	1.3022	-0.019369	0.98571	0.13632	1.0019	3.0738	0.023584	0.0090713	-0.0061243	-0.038982	-0.015296	-0.040551	-0.037954	-0.0063609	-0.048418	-0.020284	-0.0068968	-0.026464	0.0020853	-0.00080972	-0.0024511	-0.004322	0.007149	-0.0051304	0.0017806	0.0032943	-0.037864	-0.018372	0.0053537	0.0049734	-0.0025162	-0.00047167	0.0023752	-0.0028319	0.0018608	0.0029576	-0.12093	-0.0021792	0.0035014	0.0033089	-0.0054543	0.0019722	0.22432	-0.010216	-0.052251	-0.038106	-0.031479	-0.0091925	-0.061607	-0.029706	0.076058	-0.066932	-0.36665	-0.19943	0.18286	-0.29127	-0.034508	-0.24262	-0.0001475	-0.0011074	-0.21328	
Deletion Peak  1 - CN values	1p31.3  	chr1:63261852-67387711(probes 238:297)        	chr1:65047679-65250134(probes 261:266)        	chr1:64866038-65437707(probes 259:271)        	0.13054	    0.13054		Actual Copy Change Given	0.0069696	0.0035282	0.0013039	0.01675	0.0076018	0.0066444	0.0077701	0	0.0061949	0.02544	0.023123	-0.017161	0	0.012293	0	0.15991	0.00027553	0.0028849	-0.1208	-0.07784	-0.0077654	0.010042	0.010691	0.012447	-0.69166	-0.014729	-0.57871	-0.0034234	0.012318	0	0.042598	0.051855	-0.88437	0.031998	0.0022148	0.022989	-0.33589	0	0.0061404	0.01565	0.02831	0.021096	0.0057074	0.0034448	0.046973	0	-0.070676	0.10701	0.0089186	0.0042439	-0.021329	0.037231	0.0010655	0.010765	-0.013118	-0.046787	-0.017657	0	0.022094	0.00016273	0.0070514	-0.0052665	0.0073471	0.016788	0	0.0080894	-0.016433	0.0013095	-0.045595	0.007788	0.0016002	-0.38389	0.0054634	-0.002674	-0.0040769	-0.48106	0	-0.00071293	-0.32526	-0.0012997	0	-0.94848	-0.0051301	0	-0.0015358	-0.0024209	-0.0017959	-0.0052349	-0.00056402	-0.012381	0.017087	-0.0023656	-0.0023721	-0.0054244	-0.0080992	-0.00081443	-0.2827	0.020053	-0.23328	0.005964	0.024688	-0.54688	0.0069823	0.010289	-0.0010861	0.0064455	-0.30018	0.018491	-0.50106	0.017658	0.0070809	-0.58167	-0.018121	-0.0064144	-0.86016	
Deletion Peak  2 - CN values	2q22.1  	chr2:136747893-149637131(probes 2008:2101)  	chr2:140564991-141066350(probes 2029:2036)  	chr2:138193278-149637131(probes 2021:2101)  	0.0082785	  0.0082785		Actual Copy Change Given	0.00073953	0	0.00085478	-2.3912e-05	-0.0023981	-0.0031149	0	-0.067911	0.00083834	-0.025568	0.010601	-0.01708	0.0031179	-0.0014341	0.00078534	-0.0042667	-1.5	-0.008896	-0.00017101	-0.018318	0.10139	-1.5	0.027998	0.004701	-0.0015973	0.0044442	-0.0057488	0.00032707	-0.013779	0.032807	-0.00097356	0.019005	0.0087833	0.00205	0.018156	-0.0062082	-0.32923	0.10437	-0.0055684	0.012875	-0.005969	-0.0068929	0.019283	-0.027096	0.039922	0.032469	-0.0074539	0.049497	0.0016348	-0.15382	0.01802	-0.043946	-0.00092296	0.0042293	-0.26145	0.0082784	0.009479	0.0095328	-0.1964	0.031039	-0.012541	0.010362	-0.0087385	-0.0080374	0.028034	0.024204	0.017416	-0.73291	-0.83938	0.0041635	0.0013234	0.0089928	0.0052785	0.00067019	-0.00071359	0.0033941	0.0052599	0	0.0049878	0.0043558	0.0037057	-0.04717	-0.0036886	0.00091629	0.0020009	0.0013571	-0.00068537	0.0033098	0.0012787	0.0087006	-0.075603	0.00019956	-0.0013774	-0.00071372	0.001001	-0.86628	-0.28366	0	0.0069312	0.0020237	-1.5	0.0018127	0.001498	-0.45788	0	0.0023254	-0.32035	-0.0084229	-0.67807	0.0041963	0.004935	0.09449	0.0025095	0.0025253	-0.83765	
Deletion Peak  3 - CN values	3p13    	chr3:70330075-72954816(probes 2762:2801)      	chr3:71927854-72796246(probes 2783:2792)      	chr3:69941316-73875954(probes 2755:2815)      	0.0011489	  0.0011489		Actual Copy Change Given	-0.82525	0.0056686	-0.056212	-0.028106	-0.34478	0.016147	-0.0046234	0.11634	-0.80407	0.023635	0.7083	0.0024524	0.00017577	-0.0069919	0.0020169	0.012612	-0.0183	-0.0030953	-0.0017802	0.099265	0.090903	-0.003673	0.0055472	0	0.27537	0.015465	0.0074609	0.013863	0.014816	0.035422	-0.33958	0.028613	0.040955	-0.19439	0.014663	0.027465	0.028463	-0.42396	-0.0057818	0.058331	0.045415	-0.032393	-0.41645	0.0026299	0.054261	0.34126	0.0072928	0.077285	-0.70443	0.16307	0.10123	-0.13535	0.0089893	-0.0055024	0.050042	0.030115	-0.049025	0.031211	0.04267	0.025028	-0.62703	0.048805	0.018815	-0.64494	0.018932	0.0064985	-0.13064	0.01233	0.087741	-0.0015281	0.0046332	-0.80609	0.0050926	-0.22618	-0.0058759	0.0012353	-0.0046459	0.0008691	0.011252	-0.00043625	0.0027165	0.0081126	-0.84881	-0.52721	-0.59328	0.00047125	-0.00089564	0.0013594	-0.00089586	0.026396	0.02	0.0020196	-0.44863	0	0.0091417	0.0021816	0.24936	0.00069072	-0.64902	-0.0044637	0.013827	0.0065782	0.0029296	-0.015218	-0.0031148	0.0059044	0.056941	0.012426	0.0082275	0.010387	0.015374	-0.10706	-0.00099362	0.0012317	0.048402	
Deletion Peak  4 - CN values	5q13.2  	chr5:54459221-76494345(probes 4256:4402)      	chr5:68323046-68482362(probes 4359:4360)      	chr5:66654357-73129977(probes 4339:4387)      	0.016779	   0.016779		Actual Copy Change Given	0.0055567	0.00021656	0.0033856	-0.19108	0.0036836	0.014963	0.0021681	-0.67384	0.0026089	-0.032319	-0.68831	-0.187	-0.007063	-0.19347	-0.59857	-0.78876	0.00052395	-0.2732	-0.00074887	-0.27927	-0.013729	0.015649	0.0074186	0.0046805	0.0069007	-0.34399	0	0.017525	0.036343	0.051869	0.013435	0.010385	-0.44448	-0.36664	0.00974	0.01593	0.0023607	0.018709	0.0020825	-0.22416	0.036579	-0.54738	0.017909	0	0.049495	-0.026307	0.051418	-0.37945	0.0068659	0.040428	-0.60977	-0.11048	0.011962	0.069958	-0.8148	-0.45288	0	0.029328	0.0094853	0.055222	0.0014542	0.02262	0.0069158	-0.06395	0.0035463	-0.00084282	0.015897	-0.017777	0.2086	0.008399	-0.025915	-0.0027111	-0.0030699	0.0044016	-0.77129	0.004082	0.0097684	0.0074923	0.0042873	0.0014182	0.064226	0.0123	-0.001058	-0.19964	0.0015646	0.00019565	0.0023398	0.0032268	-0.00049768	0.0084927	-0.24527	0.00066284	0.0052883	0.0012325	0.0081998	0.0075043	-0.29692	0.0050083	0.014967	0.0038072	-0.007516	0.0076245	0.0028736	0.0071431	-0.67758	0.005103	0.037805	0.011852	-0.0052808	0.01594	0.010769	-0.93569	0.0019565	0.0034932	-0.6952	
Deletion Peak  5 - CN values	5q15    	chr5:96716255-100717422(probes 4573:4615)    	chr5:98133617-98202674(probes 4597:4600)      	chr5:96716255-101324279(probes 4573:4623)    	0.001795	   0.001795		Actual Copy Change Given	-0.0068536	0.00021656	0.0033856	0.022205	0.0036836	-0.2141	0.0021681	-0.058769	0.0026089	-0.032319	-0.68831	0.01016	-0.007063	-0.014901	0.0015235	-0.24104	0.00052395	-0.0017107	-0.00074887	0	-0.013729	-1.2308	0.0074186	0.0046805	0.0069007	-0.26923	0	0.017525	0.036343	0.051869	0.059847	0.010385	0.11023	-0.33577	0.00974	0.01593	-0.35512	-0.38035	0.0020825	-0.22416	0.16578	-1.0004	0.017909	0	0.049495	0.017517	0.051418	0.097296	0.0068659	0.051687	0.16281	-0.032658	0.011962	0.016691	0.015214	0.055863	0	0.11202	-0.54186	0.055222	0.0014542	0.02262	0.0069158	-0.06395	0.0035463	-0.90195	0.015897	-1.3645	-0.60345	0.008399	-0.0033835	0.01036	-0.0030699	0.0044016	-1.5	0.004082	-0.23092	0.0074923	0.0042873	0.0014182	0.064226	-0.020572	-0.001058	-0.005105	0.0015646	0.00019565	0.0023398	0.0032268	-0.00049768	-0.0078698	-0.04606	0.00066284	0.0052883	0.0012325	0.0081998	0.0075043	-0.53163	0.0050083	0.014967	0.0038072	-1.5	0.0076245	0.0028736	0.0071431	0.00062869	0.005103	0.037805	0.011852	-0.0052808	0.01594	0.010769	-0.23876	0.0019565	0.0034932	0	
Deletion Peak  6 - CN values	6q14.3  	chr6:84879631-87907117(probes 5668:5688)      	chr6:87084405-87559292(probes 5681:5684)      	chr6:81401614-122830967(probes 5613:5865)    	1.7593e-07	 1.7593e-07		Actual Copy Change Given	-0.0034678	6.5443e-06	0	0.011055	0.0041859	-0.33326	0.0039254	-0.15884	0.0072953	-0.64715	-0.69084	-0.0025979	-0.019341	-0.18547	-0.0053863	-0.53543	-0.81579	0.028863	0	-0.28444	0.0018948	-0.82664	0.0059937	-0.037604	-0.0025328	-0.31554	0.0086984	0	-0.02047	-0.0012051	-0.032506	-0.27571	0	0.0098866	0	0	-0.69387	-0.41386	-0.0025098	-0.16625	-0.029306	-0.52033	-0.0085774	-0.78383	-0.0069814	-0.55456	0.013299	0.09733	-0.19652	-0.47666	-0.63404	0.034582	0.046353	0.040535	0.05021	-0.40855	0.059319	-0.013023	-0.24081	0.00090681	-0.0014199	-0.019993	-0.66469	0.010449	-0.0043096	-0.38857	0	-1.481	-0.045428	0.010047	-0.0096252	-0.032975	-0.46636	-0.026464	-0.77205	-0.0027111	-0.26591	-0.0045054	-0.32733	-0.0062928	-0.002131	-0.67102	-0.83602	-0.011316	-0.003413	-0.0095664	-0.0021784	-0.0017054	-0.00448	-0.017932	-0.0011474	0	-0.42077	-0.0047012	-0.033079	-0.81948	-0.5246	0.0061509	0.0082359	0.0012201	-0.88211	-0.5584	0.0063636	-0.46584	-0.0032209	-0.023529	-0.33422	-0.0059359	0.0069278	-0.044511	-0.0048671	0.12325	0.0011064	-0.006273	-0.025618	
Deletion Peak  7 - CN values	8p21.2  	chr8:9632689-27901352(probes 6620:6775)        	chr8:24506618-24542456(probes 6733:6734)      	chr8:17932292-26463698(probes 6671:6755)      	0.0093503	   0.021915		Actual Copy Change Given	-0.82352	-0.0052464	-0.59763	0	-0.002942	-0.0087707	-0.74943	-0.69138	-0.76081	-0.65912	-1.2531	-0.31061	-0.017294	-0.55627	-0.74599	-0.7884	-0.81073	-0.67244	0.0015785	-0.2819	0.079435	-0.88496	-0.0080563	-0.81567	-0.71548	-0.39465	-0.019537	0.0049172	-0.39603	-0.53845	-0.26188	-0.036918	-0.49354	-0.39647	-0.0087763	0.0049619	-0.18242	0.011117	0	-0.61342	-0.13378	0.097863	0.0049649	-0.81585	-0.31956	-0.65846	-0.087619	-0.0069806	-0.0098892	-0.56334	-0.026579	-0.38298	-0.041731	-0.59634	-0.87511	-0.5831	-0.30618	-0.5329	-0.25187	-0.69286	-0.1476	0.28351	0.0090962	0.014125	-0.43537	-0.012403	-0.59219	0.00050502	0.28498	0	-0.28016	-0.8095	-0.47103	0.00096263	-0.7778	-0.48269	-0.20336	0.0097828	0	0.0022215	-0.22445	-0.68456	-0.30846	-0.49045	-0.57739	0	0.0028617	5.9988e-05	-0.27308	-0.69161	-0.54198	-0.14603	-0.43535	0.0017691	-0.56064	-0.82609	0.23499	0.0052706	-0.90657	0	0.015073	-0.58265	0	-0.0084422	-0.6694	-0.79145	-0.79555	0.0061471	-0.31593	-0.0030653	-0.17045	-0.58577	-0.00083541	-0.48915	-0.81709	
Deletion Peak  8 - CN values	8p11.21 	chr8:37133741-42842524(probes 6862:6939)      	chr8:41859714-41992627(probes 6921:6924)      	chr8:41680577-42194068(probes 6917:6927)      	0.093166	    0.20838		Actual Copy Change Given	0.0012005	-0.0052464	-0.59763	0	-0.002942	-0.0087707	-0.76087	0.81524	-0.013611	-0.65912	-0.69232	0.03198	-0.017294	-0.53788	-0.75033	-0.7884	0.78272	-0.67804	0.0015785	-0.2819	0.079435	0.82976	-0.0080563	-0.81567	0.0012357	-0.014218	-0.55995	0.0049172	0.009728	-0.096474	0.0028046	-0.036918	-0.53323	-0.39647	-0.0087763	0.0049619	0.19536	0.011117	0	-0.56629	-0.045769	0.097863	-0.41612	-0.0081399	0.02308	0.20249	-0.087619	-0.06826	-0.72437	0.024119	-0.026579	-0.1718	-0.47299	0.0085273	1.8352	-0.632	-0.30618	-0.5329	-0.011312	-0.69286	-0.18404	0.28351	0.0090962	0.014125	0.060248	-0.012403	-0.17642	0.00050502	0.28498	0	0.0068233	-0.38171	-0.47103	0.00096263	0.0027242	-0.48269	-0.20336	0.0097828	0	0.0022215	0.0020233	-0.96922	0.020785	-0.46437	-0.58313	0	0.0028617	5.9988e-05	-0.27308	0.65745	-0.33459	0.0018093	0.035168	0.0017691	-0.56064	0.012903	0.23976	0.0052706	-0.3501	0	0.015073	0.0091846	0	-0.0091135	0.002098	-0.73866	0.34719	0.0061471	-0.31593	-0.0030653	-0.17045	-0.58257	-0.00083541	-0.48915	-1.1273	
Deletion Peak  9 - CN values	10q23.31	chr10:89605005-90036483(probes 8476:8505)    	chr10:89790834-89812219(probes 8491:8494)    	chr10:85653575-95707725(probes 8393:8603)    	9.8455e-30	 9.8455e-30		Actual Copy Change Given	-1.5	-0.0027162	-1.1766	-0.0060396	-0.010278	-0.0018243	-0.015979	-0.15232	-0.29454	-0.65578	2.1155	0.0028262	-0.0020187	-0.024408	-0.023213	-0.52628	0.0047903	0.0014239	-0.090064	-0.0030354	-0.0016364	0.81047	-0.018681	-0.33488	-0.70622	0.0014442	-1.1752	-0.018338	-0.31243	0.0018002	0.01511	0.021776	-0.19425	-0.36932	-0.016286	-0.015538	-0.32528	-0.0028083	-0.0038667	-1.2651	-0.013121	-0.027946	-0.3116	-0.017051	-0.0040527	-1.1613	-0.001953	-0.55674	-0.0074823	-0.20625	-0.62201	-1.0819	-0.87729	-0.71812	-0.052434	-0.010355	-0.46032	0.01548	0.030063	0	-1.1402	0.0090713	-0.0061243	-1.015	-0.015296	-0.0011311	-0.037954	-0.0063609	-0.048418	-0.020284	-0.0068968	-1.5	0.0072767	-0.00080972	-0.0024511	-0.97544	0.007149	-0.34821	0.0017806	0.0032943	-0.40318	-1.4126	0.0053537	-1.0547	-0.53386	-0.00047167	0.0023752	-0.0028319	0.0018608	-0.76961	-0.51831	-0.0021792	0.0035014	0.0033089	-0.0054543	0.0019722	-0.28234	-0.010216	-1.2848	-0.00085143	0.008163	-1.1359	-1.0745	-0.46619	0.076058	-0.49596	-1.5	-0.84648	-1.4022	-0.5139	-0.034508	-0.20948	-0.0001475	-0.0011074	-0.21328	
Deletion Peak 10 - CN values	11q23.2 	chr11:113676693-114556953(probes 9238:9253)	chr11:113738307-114005946(probes 9243:9246)	chr11:113677761-114573312(probes 9239:9255)	0.0076716	  0.0076716		Actual Copy Change Given	0.0026433	-0.001994	0.0022581	-0.0050405	0	0	0.00060783	0.13503	0.0022334	0.0010086	-0.6958	0	0.0013758	0.0040182	0.0024099	0.007117	0	0.007627	-0.39141	-0.0021806	0	0.0017622	0.0046366	-0.42124	0.0083824	-0.36862	0.0084399	0.015045	-0.0091136	0.022908	0.073229	0.022541	0.0071235	0.015119	0.018766	0.0048312	-0.70443	0.047795	0.009675	0.030179	0.0039512	-0.42163	0.0070793	0.4587	0.034108	0.045469	0	0.052028	0.0037787	-0.50884	0.096834	-0.043164	0.024888	0.020204	-0.0050312	0.033958	-0.27043	0.021577	0.11643	-0.0069846	0.034394	-0.0042133	0.013224	0.017393	0.0058212	0.0048464	0.029123	-0.0014522	0.26996	-0.022557	0.0032056	0.011408	0.0071109	0.002796	0.017264	0.0022902	0.0075531	0.015687	0.0037283	0.00055465	0.0041683	0.025297	0.010172	-0.47183	0.0030186	0.0086005	0.0033553	0.0018911	0.0024314	-1.5	-0.63439	0.0033108	0.0015418	0.0045424	-0.42937	0.0012755	0.54578	0.0088953	-0.62406	0.0087239	0.0015142	0.00052986	0.01066	-0.44467	0.0016922	-0.78703	-0.75825	0.025491	0.044176	-1.2142	0.021006	0.29249	0.0031891	0.0034803	0.027462	
Deletion Peak 11 - CN values	12p13.1 	chr12:11587862-14028033(probes 9403:9440)    	chr12:12910234-13042075(probes 9428:9429)    	chr12:11760683-13444258(probes 9408:9434)    	0.048127	   0.048127		Actual Copy Change Given	0.011942	-0.0015762	-0.58655	0.0029851	-9.9599e-05	-0.2329	-0.0027175	-0.19271	-0.78721	0.020641	-0.69678	-0.0068416	0.002351	-0.00065671	-0.0068656	-0.78761	-0.002079	-0.69033	0.0012407	0.0017437	0.091464	-0.02977	-0.0032489	-0.038218	-0.0092057	-0.7315	0.0042253	0.037909	-0.0030164	-0.0040902	-0.031336	-0.098946	-0.10189	-0.398	-0.0065041	-0.021876	0.0034997	-0.022552	0.0059458	-0.624	-0.016763	0.011464	-0.39821	0.012336	-0.0038958	-0.86012	0.02421	-0.035099	-0.0051101	-0.5057	-0.64541	-0.06121	-0.48316	-0.017503	0.018704	-0.49955	0.0027001	0.010138	-0.29016	-0.052967	0.03062	0	0.0013476	-0.44923	-0.0074531	0.01462	-0.16592	0.018853	0.3749	0.00071755	0.0027581	0.0041832	-0.45578	-0.008953	0.003248	-0.026174	-0.4384	-0.003643	-0.010847	-0.0010157	-0.0014655	-0.018891	-0.85941	0.0023808	-0.58476	-0.00064141	-0.0017252	-0.0020374	0.0028818	-1.5	-0.060763	-0.0010366	-0.44333	-0.0042696	0.0016492	0.0071504	-0.27645	0.0014675	-0.23648	-0.0038947	-0.0043253	-0.56924	-0.54941	0.004589	0.0050918	0	0.028966	-0.81061	-0.014463	0.01661	-0.0041977	-0.13492	-0.0011462	0.001837	-0.055758	
Deletion Peak 12 - CN values	12q24.31	chr12:122299660-133851895(probes 9907:9951)	chr12:125390963-126007117(probes 9928:9935)	chr12:125390963-126779403(probes 9928:9938)	0.24894	    0.24894		Actual Copy Change Given	-0.0014588	-0.0015762	0.0010186	-0.0097233	-9.9599e-05	-0.16873	-0.0027175	0.01755	-0.0016937	-0.063484	2.784	0.2885	0.002351	-0.00065671	-0.00091013	0.00020945	-0.002079	0.0069275	0.0049668	0.0017437	0.091464	-0.0027666	-0.0032489	-0.76725	-0.12163	-0.080993	0.0042253	-0.047413	-0.40353	-0.054724	-0.031336	-0.039218	-0.062465	0.0056028	-0.0065041	0.015746	0.0034997	-0.071164	0.0059458	0.01285	-0.4247	0.011464	0.19549	0.027323	-0.014612	0.35835	-0.12054	-0.13128	-0.0051101	-0.0045431	0.54983	-0.48826	-0.065339	-0.018846	-0.060201	-0.62133	-0.071065	-0.026354	-0.27417	-0.24256	-0.018243	0	0.0013476	-0.0031949	-0.0074531	-0.029372	-0.16592	0.0052288	-0.046861	-0.0071191	0.0027581	0.0041832	-0.0055572	-0.008953	-0.028977	-0.025757	0.0054348	-0.003643	-0.010847	-0.0010157	-0.0014655	0.016964	0.010707	0.0023808	0.0034443	-0.00064141	-0.0017252	-0.0020374	0.0028818	-1.5	-0.13524	-0.0010366	0	-0.0042696	-0.33221	-0.72688	-0.015923	0.0014675	0.0039992	-0.0038947	0.0087554	-0.0018868	-0.0013428	-0.013163	-0.0029749	0	-0.79378	-0.0088087	-0.014463	-0.032485	-0.0041977	-0.13492	-0.0011462	0.001837	-0.0051882	
Deletion Peak 13 - CN values	13q14.11	chr13:37454639-57127872(probes 10103:10208)  	chr13:41133187-43835656(probes 10134:10144)  	chr13:37168615-77456592(probes 10090:10308)  	6.392e-05	  6.392e-05		Actual Copy Change Given	-0.81015	0.00066792	0.0026248	0.010102	0.0066027	-0.16086	0.0036885	-0.14874	-0.77837	-0.64155	0.026768	-0.32295	-0.0041676	-0.51063	-0.74411	0.0064585	-0.044044	-0.70132	-0.0023427	-0.28238	-0.41753	-0.83867	-0.005258	-0.023596	-0.0035272	-0.35959	-0.0073748	-0.023142	-0.39175	-0.46451	-0.065134	-0.046254	-0.40561	-0.0054929	-0.066964	-0.045555	-0.3731	-0.0037907	-0.0049943	-0.63137	-0.040756	-0.49283	-0.051378	-0.26871	-0.33587	-0.6294	-0.0055801	-0.35015	0.0059065	-0.50896	-0.034171	-0.27932	-0.0094624	-0.00049146	-0.85917	-0.049145	-0.46094	-0.065114	-0.1845	-0.030525	0	-0.015017	-0.20783	-0.012666	-0.0048505	-0.055654	-0.14656	-0.73573	-0.42082	-0.0027879	-0.28265	-0.0056536	-0.0066502	-0.0033443	-0.16227	-0.0013465	-0.052532	-0.34897	-0.0017681	-0.0017118	-0.008497	-0.1541	-8.794e-05	-0.0016439	0	-0.51991	4.3881e-06	0	0	-1.5	-0.015223	-0.26082	0.0093332	-0.0010054	-0.56604	-0.0063352	0.0032397	-0.020941	-0.037529	-0.0038157	-0.89393	-0.56351	-0.55376	-0.46078	0.0018937	-0.79009	-0.3317	-0.0005473	-0.69576	-0.58476	-0.10628	-0.16696	5.9923e-05	0.00086929	-0.93926	
Deletion Peak 14 - CN values	16q24.1 	chr16:78508930-90354753(probes 11287:11339)  	chr16:83962560-90354753(probes 11328:11339)  	chr16:71407805-90354753(probes 11230:11339)  	5.3139e-06	 5.3139e-06		Actual Copy Change Given	-0.031227	-0.014559	-0.48274	-0.024024	-0.024113	-0.034569	-0.036136	-0.62785	-0.042328	-0.66805	-0.74758	-0.32804	-0.0024298	-0.5289	-0.0047736	-0.016205	0.00066571	0.0079718	0.0032138	-0.28823	-0.16653	-0.88227	-0.053048	-0.82592	-0.69915	-0.43359	-0.018909	-0.15528	-0.45223	-0.61651	-0.098076	-0.28794	-0.59485	-0.4163	-0.058956	-0.02049	-0.015023	-0.075196	-0.0026108	-0.12222	-0.43322	-0.04005	-0.44617	-0.62454	-0.072172	-0.30589	-0.24986	-0.69739	-0.040006	-0.048447	-0.13335	-0.085319	-0.089055	-0.63673	-0.91318	-0.19462	-0.38985	-0.085419	-0.11338	-0.15917	-0.032094	-0.021432	-0.021017	-0.24257	-0.43943	-0.037681	-0.20561	-0.02164	-0.063623	-0.44002	-0.062706	0.14091	-0.00094309	-0.062278	-0.0015252	-0.52377	-0.39435	0.00083309	0.0052162	0.0018264	-0.0016219	-0.20633	-0.83745	-0.0027052	0.010277	0.0045977	0.0013	-0.0095181	0.0057117	-0.69563	-0.64656	-0.0041493	-0.43581	0.0075835	-0.023035	-0.81815	-0.29992	-0.022962	-0.26147	-0.031329	-0.019026	-0.0099381	-0.53659	-0.016493	-0.67025	-0.8045	-0.80608	-0.020199	-0.054988	-0.59951	-0.14792	-0.57614	-0.0020608	-0.0083478	-0.85298	
Deletion Peak 15 - CN values	17p13.1 	chr17:6726127-7961035(probes 11369:11398)      	chr17:7188892-7588604(probes 11380:11385)      	chr17:6932878-7961035(probes 11372:11398)      	0.029665	   0.029665		Actual Copy Change Given	-0.0034519	-0.0090085	-0.0056086	-0.017819	-0.012651	-0.0077497	-0.013033	-0.40254	-0.013712	-0.64513	-0.70799	-0.30861	-0.0020065	-0.45785	-0.00050773	-0.51734	0.0016423	-0.0031692	0.0079227	0.012018	-0.0080913	-0.051244	-0.039477	-0.81715	-0.68822	-0.052033	-0.58531	-0.089837	-0.069249	-0.10413	-0.090269	-0.37825	-0.11163	-0.02775	-0.039675	-0.029718	-0.0065041	-0.019572	-0.00384	-0.69233	-0.12134	-0.055391	-0.050645	-0.035655	-0.05511	-0.62934	-0.17677	-0.32158	-0.032376	-0.063733	-0.7469	-0.47238	-0.56439	-0.59547	-0.9454	-0.42606	-0.5023	-0.36682	-0.15498	-0.23674	-0.02278	-0.021781	-0.018013	-0.20526	-0.43805	-0.025035	-0.57803	-0.012953	-0.083975	-0.023841	-0.28935	-0.032578	-0.011591	-0.040815	-0.020602	-0.2782	-0.0099165	-0.022257	-0.011244	-0.0049875	-0.014896	0.006753	-0.025818	-0.016314	0.0068863	-0.0098874	-0.0033161	-0.011492	-0.0066683	-0.70759	-0.46484	-0.011658	-0.44975	-0.0094388	-0.43008	0	-0.29746	-0.014367	-0.027242	-0.025118	-0.0062942	-0.01261	-0.01856	-0.028162	-0.0040874	-0.80389	-0.80939	-0.85855	-0.75719	-0.04627	-0.030912	-0.51792	-0.012715	-0.021448	0.032155	
Deletion Peak 16 - CN values	17q21.31	chr17:41809000-42771669(probes 11620:11642)  	chr17:42536077-42582330(probes 11637:11638)  	chr17:41601511-45144586(probes 11605:11658)  	0.00015398	 0.00015398		Actual Copy Change Given	-0.0034519	-0.0090085	-0.54649	-0.0061308	-0.012651	-0.0077497	-0.77152	-0.1645	-0.77847	0.0067065	0	-0.012679	-0.0020065	0.018663	-0.00050773	-0.016595	0.0016423	-0.69945	0.0079227	-0.27061	-0.0080913	-0.08108	-0.039477	-0.013908	-0.044482	-0.052033	-0.0028237	-0.089837	-0.069249	-0.10413	-0.090269	-0.34049	-0.11163	-0.02775	-0.039675	-0.029718	-0.0065041	-0.019572	-0.00384	-0.7086	-0.11495	-0.028483	-0.050645	-0.75253	-0.05511	-0.014823	-0.11643	-0.57242	-0.032376	-0.063733	-0.10733	-0.46514	-0.059012	-0.4625	-0.079798	-0.092582	-0.071407	-0.30724	-0.086438	-0.12731	-0.5557	-0.021781	-0.018013	-0.025709	-0.030992	-0.025035	-0.35285	-0.012953	-0.083975	-0.023841	-0.29109	-0.032578	-0.011591	-0.28172	-0.020602	-0.014217	-0.0099165	-0.37783	-0.011244	-0.0049875	-0.014896	0.006753	-0.85884	-0.012965	0.003597	-0.0098874	-0.0033161	-0.011492	-0.0066683	-0.0051954	-0.42235	-0.011658	-0.0045167	-0.0094388	-0.046738	0.0025409	-0.29317	-0.008432	-0.66753	-0.025118	-0.0062942	-0.59081	-0.57585	-0.028162	-0.0040874	-0.01209	-0.27759	-0.027058	-0.03593	-0.04627	-0.030912	-0.47882	-0.012715	-0.021448	-0.79172	
Deletion Peak 17 - CN values	21q22.2 	chr21:39900175-42862782(probes 12601:12631)  	chr21:40098487-40485371(probes 12609:12612)  	chr21:39852239-42876022(probes 12569:12647)  	7.9884e-15	 7.9884e-15		Actual Copy Change Given	-0.81315	-0.00078966	-0.0038405	-0.016166	-0.38876	0.011955	-0.0075691	-0.1259	-0.79705	-0.67653	-0.69999	-0.003564	0.0036766	-0.57257	-0.75594	0.0040323	-0.0012361	-0.69707	-0.1241	-0.28854	0.093793	-0.10208	-0.028961	-0.83361	-0.73083	-0.021398	-0.61385	-0.097779	-0.062362	-0.59761	-0.46173	-0.054056	-0.50648	-0.031803	-0.032354	-0.067188	-0.00079229	-0.042874	-0.01588	-0.042765	-0.41187	-0.014654	-0.063417	-0.020105	-0.40151	-0.066401	-0.056095	-0.40321	-0.0081264	-0.037354	-0.66659	-0.62304	-0.54302	-0.64153	1.6286	-0.59771	-0.04674	-0.042873	-0.081653	-0.10225	-0.61034	0.025681	-0.0045319	-0.016568	-0.024411	-0.028107	0.00083671	-0.005325	-0.38036	-0.44145	-0.2768	-0.0070039	-0.0021452	-0.23943	0.00056009	-0.52903	0.0048056	-0.061738	-0.0031987	-0.0081787	-0.017662	0.012936	-0.83355	-0.5299	-0.5898	-0.52835	0	-0.0029204	-0.0070794	-0.69751	-0.65903	0.0023458	0.010877	-0.0094003	-0.013731	-0.0056283	0.19753	-0.014431	-0.30701	-0.053035	0	-0.01416	-0.56993	-0.015741	0.0069028	-0.017351	-0.80398	-0.028548	-0.74518	-0.67961	-0.025071	0.12902	-0.60565	-0.013683	-0.098662	
