		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.3	48 (29%)	117	0.051339	0.305	0.31622	0.617	0.01119	0.118	0.14582	0.466	0.20193	0.534	0.4054	0.683	0.41812	0.698	0.39724	0.679	0.57054	0.793	0.14986	0.468	0.92174	0.98	0.35642	0.648
amp_1q32.1	49 (30%)	116	0.10043	0.413	0.52823	0.771	0.00204	0.0355	0.21701	0.538	0.02056	0.178	0.15993	0.482	0.65793	0.849	0.89786	0.973	0.63748	0.834	0.76938	0.912	0.49972	0.752	0.24726	0.57
amp_6p21.1	54 (33%)	111	0.01249	0.128	0.13476	0.45	0.00034	0.00763	0.49531	0.752	0.18175	0.506	0.03409	0.244	0.65685	0.849	0.145	0.465	0.22516	0.541	0.38902	0.675	0.49768	0.752	0.40327	0.683
amp_8p11.23	53 (32%)	112	0.072819	0.361	0.28206	0.592	9.9999e-06	0.000535	0.16034	0.482	0.47334	0.735	0.14768	0.467	0.11247	0.415	0.072429	0.361	0.01854	0.17	0.02742	0.217	0.93341	0.983	0.13272	0.45
amp_8p11.21	70 (42%)	95	0.042	0.274	0.21215	0.538	9.9999e-06	0.000535	0.0207	0.178	0.39589	0.679	0.70457	0.874	0.45487	0.719	0.12601	0.441	0.04291	0.276	0.27474	0.592	0.21392	0.538	0.19931	0.531
amp_8q24.21	109 (66%)	56	0.04325	0.276	0.2605	0.582	9.9999e-06	0.000535	0.053969	0.306	0.93694	0.984	0.68999	0.872	0.16694	0.486	0.04696	0.29	0.25982	0.582	0.26305	0.582	0.073169	0.361	0.44736	0.714
amp_10q22.2	11 (7%)	154	0.84426	0.948	0.83816	0.948	0.3722	0.663	0.65315	0.848	0.78281	0.918	0.93617	0.984	0.20382	0.536	0.090349	0.398	0.18142	0.506	0.18986	0.516	NA	NA	NA	NA
amp_11p15.5	45 (27%)	120	0.78508	0.918	0.13504	0.45	0.1385	0.456	0.097549	0.409	0.71046	0.874	0.78929	0.919	0.12548	0.441	0.00358	0.0579	0.24208	0.567	0.53756	0.775	0.50632	0.755	0.3635	0.652
amp_11q13.3	28 (17%)	137	0.073819	0.362	0.20838	0.538	0.03564	0.251	0.02666	0.213	0.92891	0.98	0.28813	0.592	0.00411	0.0605	0.01116	0.118	0.080659	0.384	0.34014	0.635	0.04379	0.277	0.12529	0.441
amp_12p13.33	41 (25%)	124	0.20957	0.538	0.13567	0.45	0.11156	0.415	0.24603	0.57	0.054059	0.306	0.62521	0.83	0.5328	0.773	0.48616	0.749	0.84365	0.948	0.8159	0.938	0.28537	0.592	0.14807	0.467
amp_12p12.1	40 (24%)	125	0.44656	0.714	0.13567	0.45	0.062739	0.333	0.10433	0.413	0.01748	0.162	0.51535	0.76	0.42351	0.703	0.36817	0.657	1	1	0.75983	0.904	0.42657	0.707	0.21523	0.538
amp_13q12.13	126 (76%)	39	0.27913	0.592	0.18151	0.506	9.9999e-06	0.000535	0.10425	0.413	0.39928	0.681	0.12043	0.43	0.0067499	0.0839	9.9999e-06	0.000535	0.00033	0.00763	0.00414	0.0605	1	1	1	1
amp_13q12.2	125 (76%)	40	0.40441	0.683	0.28534	0.592	3e-05	0.0011	0.04589	0.288	0.45568	0.719	0.088759	0.396	0.00358	0.0579	9.9999e-05	0.0029	0.0065099	0.0824	0.02152	0.178	1	1	1	1
amp_13q22.1	120 (73%)	45	0.25465	0.581	0.052099	0.305	9.9999e-06	0.000535	0.11121	0.415	0.48475	0.749	0.27449	0.592	0.00378	0.0585	3e-05	0.0011	0.02488	0.201	0.01081	0.118	1	1	0.82939	0.943
amp_16p11.2	47 (28%)	118	0.48698	0.749	0.52842	0.771	9.9999e-06	0.000535	0.0084999	0.102	0.47535	0.737	0.26996	0.589	0.0415	0.274	0.15906	0.482	0.20829	0.538	0.8506	0.95	0.36361	0.652	0.93854	0.984
amp_17q12	46 (28%)	119	0.31667	0.617	0.079839	0.383	0.00417	0.0605	0.2836	0.592	0.30901	0.614	0.055239	0.31	0.4393	0.714	0.068849	0.358	0.58684	0.806	0.59708	0.813	0.11837	0.428	0.56239	0.791
amp_17q24.1	39 (24%)	126	0.72273	0.879	0.74014	0.89	0.00055999	0.0118	0.057669	0.316	0.66885	0.859	0.24681	0.57	0.31622	0.617	0.10034	0.413	0.65865	0.849	0.20993	0.538	0.37439	0.664	0.82485	0.942
amp_20q11.21	146 (88%)	19	0.12743	0.441	0.16509	0.486	5e-05	0.00174	0.0050699	0.0706	0.03758	0.261	0.24307	0.568	0.15472	0.478	0.00027	0.00648	0.33334	0.629	0.39664	0.679	0.32828	0.625	0.43163	0.711
amp_20q11.23	147 (89%)	18	0.12727	0.441	0.16655	0.486	7.9999e-05	0.00242	0.02319	0.19	0.03789	0.261	0.24477	0.57	0.2127	0.538	0.00021	0.00522	0.17694	0.503	0.2782	0.592	0.50051	0.752	0.69166	0.872
amp_20q13.33	146 (88%)	19	0.19924	0.531	0.21116	0.538	0.00012	0.00321	0.079319	0.383	0.1055	0.413	0.46519	0.726	0.6117	0.819	0.00065999	0.0135	0.33046	0.627	0.39533	0.679	0.17619	0.503	0.69726	0.872
amp_xp22.2	32 (19%)	133	0.167	0.486	0.50673	0.755	0.69954	0.873	0.35376	0.645	0.40348	0.683	0.37916	0.668	0.43628	0.713	0.62914	0.833	0.69239	0.872	0.86882	0.961	0.3185	0.617	0.83976	0.948
amp_xq27.3	37 (22%)	128	0.74632	0.893	0.44134	0.714	0.10169	0.413	0.03428	0.244	0.071439	0.361	0.51339	0.76	0.04043	0.273	0.2376	0.564	0.216	0.538	0.27666	0.592	0.096069	0.409	0.01961	0.175
del_1p36.11	75 (45%)	90	0.29995	0.602	0.070019	0.361	0.01629	0.153	0.13028	0.449	0.5871	0.806	0.79116	0.919	0.19245	0.52	0.01462	0.14	0.77026	0.912	0.063719	0.336	0.73592	0.888	0.79081	0.919
del_1p33	53 (32%)	112	0.36656	0.656	0.01463	0.14	0.00013	0.00335	0.11193	0.415	0.29869	0.601	0.26354	0.582	0.31056	0.615	0.18569	0.515	0.56321	0.791	0.26563	0.582	0.92389	0.98	0.4405	0.714
del_1p13.2	54 (33%)	111	0.77636	0.915	0.052719	0.305	0.00104	0.0207	0.082059	0.384	0.54397	0.782	0.58165	0.802	0.48912	0.749	0.01947	0.175	0.31201	0.615	0.21412	0.538	0.58173	0.802	0.69334	0.872
del_2p12	13 (8%)	152	0.01464	0.14	0.67182	0.861	0.02098	0.178	1	1	0.27747	0.592	0.38028	0.668	0.71588	0.876	0.14115	0.461	0.10393	0.413	0.14486	0.465	NA	NA	NA	NA
del_3p14.2	31 (19%)	134	0.94303	0.987	0.96636	1	0.83763	0.948	0.089249	0.396	0.17203	0.495	0.2936	0.596	0.55608	0.788	0.86164	0.956	0.92301	0.98	0.96105	0.998	0.2613	0.582	0.15955	0.482
del_3q26.31	18 (11%)	147	0.54986	0.783	0.92816	0.98	0.32121	0.621	0.02108	0.178	0.36044	0.652	0.61081	0.819	0.56209	0.791	0.43189	0.711	0.55059	0.783	0.03428	0.244	0.62982	0.833	0.61247	0.819
del_4p13	60 (36%)	105	0.54574	0.782	0.079059	0.383	3e-05	0.0011	0.61654	0.822	0.31122	0.615	0.22113	0.538	0.87544	0.962	0.34295	0.635	0.72071	0.878	0.21864	0.538	0.18152	0.506	0.48982	0.749
del_4q22.1	73 (44%)	92	0.55095	0.783	0.0329	0.244	6.9999e-05	0.00221	0.77955	0.917	0.1094	0.415	0.082929	0.385	0.38847	0.675	0.31753	0.617	0.83264	0.945	0.25667	0.582	0.68448	0.872	0.67362	0.862
del_4q35.1	72 (44%)	93	0.46193	0.724	0.10552	0.413	9.9999e-06	0.000535	0.9121	0.98	0.28218	0.592	0.01299	0.129	0.60318	0.815	0.04896	0.299	0.29159	0.595	0.050299	0.304	0.57057	0.793	0.86271	0.956
del_5q12.1	53 (32%)	112	0.11072	0.415	0.00431	0.0612	0.00123	0.0235	0.086129	0.39	0.4459	0.714	0.71213	0.874	0.58169	0.802	0.093539	0.405	0.2305	0.551	0.28764	0.592	0.15859	0.482	0.11931	0.428
del_5q22.2	59 (36%)	106	0.16064	0.482	0.00125	0.0235	0.0096499	0.111	0.33781	0.634	0.38853	0.675	0.89419	0.972	0.73291	0.887	0.18776	0.516	0.51268	0.76	0.23903	0.564	0.04029	0.273	0.096289	0.409
del_6p25.3	24 (15%)	141	0.44835	0.714	0.63184	0.834	0.8954	0.972	0.11905	0.428	0.57648	0.799	0.44477	0.714	0.88102	0.963	0.69658	0.872	0.8293	0.943	0.7844	0.918	0.63257	0.834	0.61289	0.819
del_6q26	30 (18%)	135	0.16995	0.491	0.95544	0.997	0.1811	0.506	0.61116	0.819	0.053059	0.305	0.14829	0.467	0.20182	0.534	0.32413	0.623	0.086779	0.39	0.33291	0.629	0.066849	0.35	0.84012	0.948
del_7q31.1	4 (2%)	161	NA	NA	NA	NA	0.03432	0.244	NA	NA	0.85046	0.95	0.64314	0.838	0.17659	0.503	0.77076	0.912	1	1	1	1	NA	NA	NA	NA
del_8p23.2	100 (61%)	65	0.18671	0.516	0.062099	0.332	9.9999e-06	0.000535	0.43876	0.714	0.9153	0.98	0.77427	0.915	0.00145	0.0266	0.0097299	0.111	0.64691	0.842	0.32884	0.625	0.4523	0.719	0.52548	0.77
del_8q11.1	17 (10%)	148	0.69132	0.872	0.28267	0.592	0.01005	0.113	0.080999	0.384	0.92435	0.98	0.70873	0.874	0.6433	0.838	0.10238	0.413	0.2082	0.538	0.086629	0.39	0.32847	0.625	0.56507	0.791
del_10q21.1	41 (25%)	124	0.10467	0.413	0.56453	0.791	0.086189	0.39	0.14169	0.461	0.24055	0.566	0.20396	0.536	0.22168	0.538	0.53673	0.775	0.39327	0.679	0.18892	0.516	0.92796	0.98	0.6954	0.872
del_10q25.2	48 (29%)	117	0.40197	0.683	0.56631	0.791	0.16192	0.482	0.32263	0.622	0.60261	0.815	0.7452	0.893	0.20597	0.538	0.03178	0.24	0.70884	0.874	0.27668	0.592	0.42878	0.709	0.5646	0.791
del_11q22.3	38 (23%)	127	0.00157	0.028	0.04219	0.274	5.9999e-05	0.00199	0.19268	0.52	0.85186	0.95	0.38814	0.675	0.0054099	0.0738	0.0076999	0.094	0.29074	0.595	0.96557	1	0.28018	0.592	0.22115	0.538
del_12q13.2	20 (12%)	145	0.31438	0.617	0.87162	0.961	0.26004	0.582	0.48858	0.749	0.3596	0.652	0.51455	0.76	0.5889	0.806	0.79854	0.925	0.70973	0.874	0.78809	0.919	0.51158	0.76	0.56923	0.793
del_14q11.2	70 (42%)	95	0.45845	0.72	0.092589	0.405	2e-05	0.000928	0.34495	0.635	0.91801	0.98	0.54624	0.782	0.29814	0.601	0.098219	0.409	0.072599	0.361	0.3422	0.635	0.60415	0.815	0.95211	0.995
del_14q31.1	72 (44%)	93	0.4585	0.72	0.1064	0.414	2e-05	0.000928	0.30337	0.605	0.97045	1	0.58973	0.806	0.21842	0.538	0.097059	0.409	0.40749	0.683	0.23826	0.564	0.45344	0.719	0.90388	0.977
del_15q21.1	79 (48%)	86	0.057519	0.316	0.14467	0.465	0.00012	0.00321	0.81673	0.938	0.093589	0.405	0.75671	0.903	0.38043	0.668	0.4139	0.692	0.43349	0.712	0.43523	0.713	0.34649	0.636	0.55122	0.783
del_15q22.33	77 (47%)	88	0.072049	0.361	0.19438	0.522	3e-05	0.0011	0.38075	0.668	0.13395	0.45	0.25153	0.578	0.34144	0.635	0.10113	0.413	0.85435	0.951	0.74445	0.893	0.67779	0.866	0.44521	0.714
del_16p13.3	14 (8%)	151	0.16151	0.482	0.73626	0.888	0.26543	0.582	0.13442	0.45	0.50131	0.752	0.69054	0.872	0.23854	0.564	0.92755	0.98	0.15469	0.478	0.46289	0.724	0.65397	0.848	0.53484	0.774
del_16q23.1	23 (14%)	142	0.02141	0.178	0.52365	0.769	0.0037	0.0585	0.5991	0.814	0.44824	0.714	0.50097	0.752	0.42196	0.703	0.73851	0.889	1	1	0.84402	0.948	0.80852	0.933	0.92519	0.98
del_17p11.2	113 (68%)	52	0.056629	0.315	0.81931	0.938	0.00229	0.0389	0.63635	0.834	0.70823	0.874	0.28853	0.592	0.22536	0.541	0.21774	0.538	0.71772	0.876	0.35396	0.645	0.88822	0.969	0.92365	0.98
del_18p11.31	125 (76%)	40	0.060759	0.328	0.50153	0.752	9.9999e-06	0.000535	0.0093099	0.11	0.2611	0.582	0.32626	0.625	0.0471	0.29	0.0056999	0.075	0.18916	0.516	0.22193	0.538	0.79971	0.925	0.34895	0.639
del_18q21.2	145 (88%)	20	0.13182	0.45	0.40739	0.683	9.9999e-06	0.000535	0.052229	0.305	1	1	0.086359	0.39	0.0060299	0.0777	0.02971	0.227	0.22269	0.538	0.12414	0.441	0.89229	0.972	0.69796	0.872
del_18q22.1	141 (85%)	24	0.1081	0.415	0.11894	0.428	9.9999e-06	0.000535	0.01295	0.129	0.91062	0.98	0.16929	0.491	0.02798	0.219	0.01157	0.12	0.1119	0.415	0.29748	0.601	0.63452	0.834	0.87944	0.963
del_18q23	141 (85%)	24	0.33574	0.632	0.25636	0.582	9.9999e-06	0.000535	0.052979	0.305	0.79234	0.919	0.14905	0.467	0.03216	0.241	0.02934	0.227	0.15515	0.478	0.532	0.773	0.6353	0.834	0.87962	0.963
del_19p13.3	36 (22%)	129	0.98828	1	0.81888	0.938	0.13886	0.456	0.16391	0.485	0.72764	0.882	0.80952	0.933	0.87399	0.962	0.91395	0.98	0.4953	0.752	0.0057099	0.075	0.46971	0.731	0.52058	0.766
del_20p12.1	49 (30%)	116	0.82548	0.942	0.30247	0.605	0.1128	0.415	0.9595	0.998	0.9033	0.977	0.86188	0.956	0.36153	0.652	0.37496	0.664	0.70229	0.874	0.25284	0.579	0.60288	0.815	0.26459	0.582
del_21q11.2	73 (44%)	92	0.61844	0.823	0.10801	0.415	0.060299	0.328	0.7577	0.903	0.34409	0.635	0.50277	0.753	0.50048	0.752	0.70869	0.874	0.082169	0.384	0.72644	0.882	0.2805	0.592	0.28726	0.592
del_22q13.31	68 (41%)	97	0.6885	0.872	0.33876	0.634	0.04089	0.274	0.91728	0.98	0.29336	0.596	0.39254	0.679	0.59393	0.811	0.27187	0.591	0.21528	0.538	0.11328	0.415	0.098249	0.409	0.01104	0.118
del_xp22.33	34 (21%)	131	0.95864	0.998	0.87114	0.961	0.26613	0.582	0.00041	0.00892	0.84702	0.949	0.87624	0.962	0.98392	1	0.53141	0.773	0.66347	0.854	1	1	0.77677	0.915	0.71553	0.876
